Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314250 | XP_003593809.2 | 78.230 | 418 | 51 | 2 | 283 | 700 | 6 | 383 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314250 | sp|O49403|HFA4A_ARATH | 44.514 | 319 | 162 | 7 | 284 | 593 | 7 | 319 | 2.14e-67 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0314250 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005270 | Msa0314250 | 0.801408 | 9.132506e-49 | -8.615850e-47 |
| Msa0025740 | Msa0314250 | 0.867927 | 9.537516e-66 | -8.615850e-47 |
| Msa0052860 | Msa0314250 | 0.830366 | 3.058653e-55 | -8.615850e-47 |
| Msa0073460 | Msa0314250 | 0.845497 | 3.914979e-59 | -8.615850e-47 |
| Msa0089360 | Msa0314250 | 0.800097 | 1.690676e-48 | -8.615850e-47 |
| Msa0121620 | Msa0314250 | 0.866013 | 3.887613e-65 | -8.615850e-47 |
| Msa0151180 | Msa0314250 | 0.813077 | 3.072811e-51 | -8.615850e-47 |
| Msa0165970 | Msa0314250 | 0.851986 | 6.207179e-61 | -8.615850e-47 |
| Msa0202930 | Msa0314250 | 0.808562 | 2.913629e-50 | -8.615850e-47 |
| Msa0205850 | Msa0314250 | 0.808951 | 2.406734e-50 | -8.615850e-47 |
| Msa0274350 | Msa0314250 | 0.937732 | 2.145942e-98 | -8.615850e-47 |
| Msa0276920 | Msa0314250 | 0.832215 | 1.073155e-55 | -8.615850e-47 |
| Msa0280630 | Msa0314250 | 0.808178 | 3.519129e-50 | -8.615850e-47 |
| Msa0287310 | Msa0314250 | 0.804110 | 2.527658e-49 | -8.615850e-47 |
| Msa0304290 | Msa0314250 | 0.808212 | 3.460666e-50 | -8.615850e-47 |
| Msa0304330 | Msa0314250 | 0.809016 | 2.330013e-50 | -8.615850e-47 |
| Msa0305890 | Msa0314250 | 0.804123 | 2.512389e-49 | -8.615850e-47 |
| Msa0307560 | Msa0314250 | 0.820698 | 5.978132e-53 | -8.615850e-47 |
| Msa0314250 | Msa0325850 | 0.809501 | 1.834448e-50 | -8.615850e-47 |
| Msa0314250 | Msa0340810 | 0.803578 | 3.260792e-49 | -8.615850e-47 |
| Msa0314250 | Msa0365490 | 0.805969 | 1.032880e-49 | -8.615850e-47 |
| Msa0314250 | Msa0426330 | 0.826185 | 3.116562e-54 | -8.615850e-47 |
| Msa0314250 | Msa0464900 | 0.830599 | 2.681923e-55 | -8.615850e-47 |
| Msa0314250 | Msa0484780 | 0.839306 | 1.714664e-57 | -8.615850e-47 |
| Msa0314250 | Msa0530650 | 0.844668 | 6.556947e-59 | -8.615850e-47 |
| Msa0314250 | Msa0547400 | 0.803564 | 3.283270e-49 | -8.615850e-47 |
| Msa0314250 | Msa0556860 | 0.805397 | 1.361832e-49 | -8.615850e-47 |
| Msa0314250 | Msa0577220 | 0.802340 | 5.878310e-49 | -8.615850e-47 |
| Msa0314250 | Msa0587190 | 0.834777 | 2.463101e-56 | -8.615850e-47 |
| Msa0314250 | Msa0608710 | 0.810972 | 8.837265e-51 | -8.615850e-47 |
| Msa0314250 | Msa0615360 | 0.807181 | 5.730391e-50 | -8.615850e-47 |
| Msa0314250 | Msa0626990 | 0.831057 | 2.071119e-55 | -8.615850e-47 |
| Msa0314250 | Msa0627350 | 0.841196 | 5.501210e-58 | -8.615850e-47 |
| Msa0314250 | Msa0628290 | 0.806386 | 8.436677e-50 | -8.615850e-47 |
| Msa0314250 | Msa0638070 | 0.801079 | 1.066168e-48 | -8.615850e-47 |
| Msa0314250 | Msa0679550 | 0.844979 | 5.405990e-59 | -8.615850e-47 |
| Msa0314250 | Msa0682550 | 0.813151 | 2.959746e-51 | -8.615850e-47 |
| Msa0314250 | Msa0693380 | 0.819805 | 9.577255e-53 | -8.615850e-47 |
| Msa0314250 | Msa0714960 | 0.816755 | 4.695148e-52 | -8.615850e-47 |
| Msa0314250 | Msa0715110 | 0.826904 | 2.099480e-54 | -8.615850e-47 |
| Msa0314250 | Msa0715150 | 0.810306 | 1.230573e-50 | -8.615850e-47 |
| Msa0314250 | Msa0731180 | 0.828972 | 6.678597e-55 | -8.615850e-47 |
| Msa0314250 | Msa0757050 | 0.818900 | 1.540101e-52 | -8.615850e-47 |
| Msa0314250 | Msa0757080 | 0.822552 | 2.228264e-53 | -8.615850e-47 |
| Msa0314250 | Msa0771580 | 0.826380 | 2.800618e-54 | -8.615850e-47 |
| Msa0314250 | Msa0786070 | 0.805514 | 1.286926e-49 | -8.615850e-47 |
| Msa0314250 | Msa0798030 | 0.811779 | 5.902185e-51 | -8.615850e-47 |
| Msa0314250 | Msa0798070 | 0.806807 | 6.874615e-50 | -8.615850e-47 |
| Msa0314250 | Msa0827470 | 0.812154 | 4.891078e-51 | -8.615850e-47 |
| Msa0314250 | Msa0836630 | 0.800982 | 1.115942e-48 | -8.615850e-47 |
| Msa0314250 | Msa0862280 | 0.806186 | 9.293733e-50 | -8.615850e-47 |
| Msa0314250 | Msa0869120 | 0.800430 | 1.446799e-48 | -8.615850e-47 |
| Msa0314250 | Msa0899230 | 0.800574 | 1.352234e-48 | -8.615850e-47 |
| Msa0314250 | Msa0908170 | 0.820970 | 5.177354e-53 | -8.615850e-47 |
| Msa0314250 | Msa0910980 | -0.801338 | 9.438630e-49 | -8.615850e-47 |
| Msa0314250 | Msa0927670 | 0.801069 | 1.071619e-48 | -8.615850e-47 |
| Msa0314250 | Msa0960160 | 0.812374 | 4.379157e-51 | -8.615850e-47 |
| Msa0314250 | Msa0974630 | 0.816250 | 6.093587e-52 | -8.615850e-47 |
| Msa0314250 | Msa0999040 | 0.810803 | 9.613364e-51 | -8.615850e-47 |
| Msa0314250 | Msa1032170 | 0.812215 | 4.741556e-51 | -8.615850e-47 |
| Msa0314250 | Msa1032440 | 0.823286 | 1.502844e-53 | -8.615850e-47 |
| Msa0314250 | Msa1082500 | 0.811587 | 6.499372e-51 | -8.615850e-47 |
| Msa0314250 | Msa1092090 | 0.826588 | 2.498134e-54 | -8.615850e-47 |
| Msa0314250 | Msa1118110 | 0.821348 | 4.236446e-53 | -8.615850e-47 |
| Msa0314250 | Msa1151710 | 0.812009 | 5.258246e-51 | -8.615850e-47 |
| Msa0314250 | Msa1201120 | 0.813649 | 2.299716e-51 | -8.615850e-47 |
| Msa0314250 | Msa1205370 | 0.812013 | 5.249531e-51 | -8.615850e-47 |
| Msa0314250 | Msa1219520 | 0.807112 | 5.926784e-50 | -8.615850e-47 |
| Msa0314250 | Msa1233500 | 0.822731 | 2.024980e-53 | -8.615850e-47 |
| Msa0314250 | Msa1276440 | 0.825032 | 5.846336e-54 | -8.615850e-47 |
| Msa0314250 | Msa1296940 | 0.803736 | 3.023623e-49 | -8.615850e-47 |
| Msa0314250 | Msa1306750 | 0.801300 | 9.608977e-49 | -8.615850e-47 |
| Msa0314250 | Msa1307550 | 0.816430 | 5.552953e-52 | -8.615850e-47 |
| Msa0314250 | Msa1314770 | 0.802843 | 4.628144e-49 | -8.615850e-47 |
| Msa0314250 | Msa1339190 | 0.806477 | 8.072741e-50 | -8.615850e-47 |
| Msa0314250 | Msa1340810 | 0.821865 | 3.217026e-53 | -8.615850e-47 |
| Msa0314250 | Msa1371240 | 0.804558 | 2.039163e-49 | -8.615850e-47 |
| Msa0314250 | Msa1409350 | 0.809188 | 2.141293e-50 | -8.615850e-47 |
| Msa0314250 | Msa1415130 | 0.808830 | 2.553979e-50 | -8.615850e-47 |
| Msa0314250 | Msa1444740 | 0.810075 | 1.380429e-50 | -8.615850e-47 |
| Msa0314250 | Msa1457430 | 0.818864 | 1.569189e-52 | -8.615850e-47 |
| Msa0314250 | Msa1463600 | 0.809161 | 2.169708e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314250 | MtrunA17_Chr2g0284481 | 78.230 | 418 | 51 | 2 | 283 | 700 | 6 | 383 | 0.0 | 633 |
| Msa0314250 | MtrunA17_Chr2g0284311 | 92.140 | 229 | 18 | 0 | 1 | 229 | 1 | 229 | 4.99e-151 | 437 |
| Msa0314250 | MtrunA17_Chr8g0379701 | 47.664 | 321 | 164 | 2 | 283 | 602 | 3 | 320 | 2.03e-96 | 303 |
| Msa0314250 | MtrunA17_Chr8g0379321 | 55.372 | 242 | 93 | 4 | 1 | 229 | 1 | 240 | 9.52e-70 | 228 |
| Msa0314250 | MtrunA17_Chr5g0410881 | 45.946 | 185 | 96 | 2 | 291 | 471 | 31 | 215 | 3.96e-50 | 182 |
| Msa0314250 | MtrunA17_Chr2g0319971 | 41.912 | 272 | 137 | 7 | 1 | 262 | 1 | 261 | 5.32e-50 | 175 |
| Msa0314250 | MtrunA17_Chr4g0039891 | 41.270 | 189 | 100 | 2 | 290 | 471 | 10 | 194 | 3.65e-45 | 168 |
| Msa0314250 | MtrunA17_Chr7g0260331 | 41.436 | 181 | 106 | 0 | 291 | 471 | 48 | 228 | 1.04e-42 | 158 |
| Msa0314250 | MtrunA17_Chr3g0135831 | 37.557 | 221 | 125 | 3 | 276 | 489 | 30 | 244 | 2.37e-42 | 157 |
| Msa0314250 | MtrunA17_Chr4g0071051 | 38.589 | 241 | 133 | 5 | 252 | 492 | 63 | 288 | 7.29e-42 | 157 |
| Msa0314250 | MtrunA17_Chr6g0467041 | 61.321 | 106 | 41 | 0 | 284 | 389 | 14 | 119 | 5.97e-41 | 152 |
| Msa0314250 | MtrunA17_Chr2g0330821 | 41.667 | 180 | 98 | 2 | 292 | 471 | 79 | 251 | 1.16e-40 | 152 |
| Msa0314250 | MtrunA17_Chr1g0204741 | 39.362 | 188 | 110 | 1 | 283 | 470 | 31 | 214 | 2.62e-40 | 150 |
| Msa0314250 | MtrunA17_Chr8g0378061 | 55.469 | 128 | 50 | 2 | 293 | 420 | 23 | 143 | 9.40e-40 | 153 |
| Msa0314250 | MtrunA17_Chr8g0392001 | 44.086 | 186 | 100 | 2 | 290 | 471 | 20 | 205 | 1.23e-39 | 150 |
| Msa0314250 | MtrunA17_Chr5g0402291 | 37.850 | 214 | 100 | 3 | 292 | 475 | 9 | 219 | 1.74e-38 | 144 |
| Msa0314250 | MtrunA17_Chr4g0041451 | 40.083 | 242 | 125 | 4 | 1 | 228 | 1 | 236 | 1.84e-38 | 142 |
| Msa0314250 | MtrunA17_Chr2g0301521 | 53.237 | 139 | 65 | 0 | 376 | 514 | 1 | 139 | 2.03e-38 | 140 |
| Msa0314250 | MtrunA17_Chr6g0485571 | 40.331 | 181 | 101 | 2 | 290 | 470 | 9 | 182 | 2.39e-38 | 145 |
| Msa0314250 | MtrunA17_Chr1g0185131 | 37.766 | 188 | 103 | 2 | 283 | 470 | 23 | 196 | 4.14e-37 | 142 |
| Msa0314250 | MtrunA17_Chr8g0375041 | 43.709 | 151 | 72 | 2 | 290 | 428 | 7 | 156 | 9.63e-37 | 138 |
| Msa0314250 | MtrunA17_Chr5g0397881 | 61.702 | 94 | 36 | 0 | 292 | 385 | 24 | 117 | 1.75e-35 | 137 |
| Msa0314250 | MtrunA17_Chr3g0134031 | 60.000 | 100 | 39 | 1 | 286 | 384 | 17 | 116 | 1.61e-34 | 135 |
| Msa0314250 | MtrunA17_Chr1g0203601 | 56.311 | 103 | 44 | 1 | 284 | 385 | 9 | 111 | 1.00e-33 | 131 |
| Msa0314250 | MtrunA17_Chr5g0441531 | 56.731 | 104 | 44 | 1 | 282 | 384 | 14 | 117 | 6.59e-33 | 127 |
| Msa0314250 | MtrunA17_Chr7g0257331 | 48.571 | 105 | 54 | 0 | 292 | 396 | 22 | 126 | 2.40e-31 | 122 |
| Msa0314250 | MtrunA17_Chr6g0472421 | 57.609 | 92 | 39 | 0 | 292 | 383 | 33 | 124 | 4.82e-31 | 124 |
| Msa0314250 | MtrunA17_Chr4g0047421 | 37.423 | 163 | 86 | 3 | 292 | 442 | 33 | 191 | 2.62e-26 | 107 |
| Msa0314250 | MtrunA17_Chr4g0023771 | 64.286 | 70 | 24 | 1 | 283 | 351 | 6 | 75 | 1.41e-24 | 99.0 |
| Msa0314250 | MtrunA17_Chr4g0023781 | 50.000 | 116 | 41 | 2 | 567 | 682 | 3 | 101 | 1.60e-23 | 95.5 |
| Msa0314250 | MtrunA17_Chr1g0179321 | 59.677 | 62 | 25 | 0 | 290 | 351 | 47 | 108 | 2.76e-22 | 92.4 |
| Msa0314250 | MtrunA17_Chr2g0316841 | 45.714 | 105 | 49 | 3 | 126 | 230 | 225 | 321 | 1.82e-15 | 78.2 |
| Msa0314250 | MtrunA17_Chr2g0330841 | 27.638 | 199 | 105 | 7 | 352 | 524 | 41 | 226 | 5.41e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314250 | AT4G18880.1 | 44.514 | 319 | 162 | 7 | 284 | 593 | 7 | 319 | 2.18e-68 | 230 |
| Msa0314250 | AT5G45710.3 | 40.979 | 327 | 148 | 6 | 284 | 610 | 7 | 288 | 2.78e-61 | 209 |
| Msa0314250 | AT5G45710.1 | 40.979 | 327 | 148 | 6 | 284 | 610 | 7 | 288 | 2.78e-61 | 209 |
| Msa0314250 | AT4G17750.1 | 44.503 | 191 | 95 | 1 | 291 | 470 | 51 | 241 | 2.44e-48 | 178 |
| Msa0314250 | AT1G32330.1 | 42.932 | 191 | 103 | 2 | 286 | 470 | 31 | 221 | 1.67e-45 | 169 |
| Msa0314250 | AT1G32330.2 | 42.932 | 191 | 103 | 2 | 286 | 470 | 31 | 221 | 1.73e-45 | 169 |
| Msa0314250 | AT2G26150.1 | 37.156 | 218 | 126 | 2 | 280 | 489 | 32 | 246 | 1.13e-44 | 164 |
| Msa0314250 | AT2G26150.4 | 37.156 | 218 | 126 | 2 | 280 | 489 | 32 | 246 | 1.13e-44 | 164 |
| Msa0314250 | AT3G02990.1 | 42.077 | 183 | 105 | 1 | 290 | 471 | 21 | 203 | 3.06e-44 | 166 |
| Msa0314250 | AT4G13980.1 | 39.706 | 204 | 109 | 3 | 293 | 490 | 24 | 219 | 4.09e-43 | 162 |
| Msa0314250 | AT5G16820.1 | 40.860 | 186 | 108 | 1 | 288 | 471 | 23 | 208 | 6.02e-43 | 162 |
| Msa0314250 | AT5G16820.2 | 40.860 | 186 | 108 | 1 | 288 | 471 | 23 | 208 | 6.02e-43 | 162 |
| Msa0314250 | AT5G03720.2 | 37.838 | 185 | 104 | 2 | 290 | 471 | 53 | 229 | 5.22e-41 | 155 |
| Msa0314250 | AT5G03720.1 | 37.838 | 185 | 104 | 2 | 290 | 471 | 53 | 229 | 5.22e-41 | 155 |
| Msa0314250 | AT3G22830.1 | 40.761 | 184 | 105 | 1 | 291 | 470 | 60 | 243 | 5.30e-41 | 155 |
| Msa0314250 | AT3G24520.1 | 39.227 | 181 | 84 | 2 | 290 | 470 | 15 | 169 | 3.27e-38 | 145 |
| Msa0314250 | AT1G67970.1 | 40.201 | 199 | 114 | 4 | 290 | 486 | 17 | 212 | 6.25e-38 | 145 |
| Msa0314250 | AT5G62020.1 | 52.672 | 131 | 54 | 2 | 281 | 410 | 11 | 134 | 7.16e-38 | 143 |
| Msa0314250 | AT5G43840.1 | 41.304 | 184 | 89 | 3 | 289 | 470 | 14 | 180 | 2.37e-37 | 141 |
| Msa0314250 | AT3G63350.1 | 38.710 | 186 | 93 | 3 | 292 | 470 | 28 | 199 | 1.59e-36 | 139 |
| Msa0314250 | AT3G51910.1 | 35.106 | 188 | 104 | 2 | 283 | 470 | 20 | 189 | 3.20e-36 | 137 |
| Msa0314250 | AT1G46264.1 | 61.290 | 93 | 36 | 0 | 292 | 384 | 34 | 126 | 1.22e-34 | 135 |
| Msa0314250 | AT4G36990.1 | 57.576 | 99 | 42 | 0 | 292 | 390 | 14 | 112 | 1.51e-33 | 130 |
| Msa0314250 | AT5G54070.1 | 36.765 | 204 | 108 | 5 | 290 | 491 | 69 | 253 | 1.76e-33 | 131 |
| Msa0314250 | AT2G41690.1 | 54.369 | 103 | 46 | 1 | 291 | 392 | 39 | 141 | 3.38e-33 | 128 |
| Msa0314250 | AT4G11660.1 | 59.783 | 92 | 37 | 0 | 292 | 383 | 59 | 150 | 8.60e-33 | 130 |
| Msa0314250 | AT2G42760.1 | 48.023 | 177 | 70 | 8 | 74 | 229 | 89 | 264 | 1.77e-31 | 124 |
| Msa0314250 | AT5G45710.4 | 32.766 | 235 | 115 | 5 | 376 | 610 | 1 | 192 | 4.34e-23 | 99.4 |
| Msa0314250 | AT5G45710.2 | 32.766 | 235 | 115 | 5 | 376 | 610 | 1 | 192 | 4.34e-23 | 99.4 |
| Msa0314250 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 292 | 379 | 146 | 233 | 2.75e-21 | 95.1 |
| Msa0314250 | AT4G18870.1 | 47.778 | 90 | 46 | 1 | 290 | 379 | 11 | 99 | 1.66e-20 | 93.2 |
| Msa0314250 | AT1G77570.1 | 37.778 | 90 | 53 | 2 | 293 | 379 | 27 | 116 | 6.78e-16 | 75.9 |
| Msa0314250 | AT2G26150.3 | 27.397 | 146 | 95 | 2 | 352 | 489 | 49 | 191 | 9.98e-14 | 72.8 |
| Msa0314250 | AT2G26150.2 | 27.397 | 146 | 95 | 2 | 352 | 489 | 49 | 191 | 9.98e-14 | 72.8 |
Find 125 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATTATAATAATGAATTT+TGG | 0.100021 | 2_4:+9976552 | Msa0314250:CDS |
| GTTACGACGGGTTGTTCTTC+TGG | 0.216236 | 2_4:-9976515 | None:intergenic |
| CTTGAGTTTGAGGAGGTAAA+AGG | 0.237638 | 2_4:+9973514 | Msa0314250:CDS |
| CAACTGATGACATTGTTTCT+TGG | 0.248061 | 2_4:+9974852 | Msa0314250:CDS |
| AGTTGCATACAAGATGTTAT+TGG | 0.278275 | 2_4:-9976257 | None:intergenic |
| AACTGATGACATTGTTTCTT+GGG | 0.286701 | 2_4:+9974853 | Msa0314250:CDS |
| TCTCACTAAGACTTATGATA+TGG | 0.289830 | 2_4:+9974817 | Msa0314250:CDS |
| TCTTCTGGTTCAACAAAATC+AGG | 0.301153 | 2_4:-9976500 | None:intergenic |
| TAAGGTAATTTAGACTCTTT+TGG | 0.303752 | 2_4:-9976642 | None:intergenic |
| TGAAACTTGAGAAGTTATTA+TGG | 0.310950 | 2_4:-9974949 | None:intergenic |
| ATGCTAGCTACATTACAAAA+AGG | 0.320103 | 2_4:-9976032 | None:intergenic |
| GAAAAGTTGATACACAACTA+TGG | 0.322439 | 2_4:+9975613 | Msa0314250:CDS |
| ACTCATGGACCTTGTATGTT+TGG | 0.349471 | 2_4:-9973275 | None:intergenic |
| AAGATAAACCTTTAATGAAA+TGG | 0.354709 | 2_4:+9973713 | Msa0314250:CDS |
| GGCTCAGTTGCAACCGGATT+AGG | 0.358087 | 2_4:-9976422 | None:intergenic |
| AGCTCAGTTGCATCATGATT+AGG | 0.360536 | 2_4:-9976383 | None:intergenic |
| AGCTTGGTTTCAATCATTCC+TGG | 0.362803 | 2_4:+9973583 | Msa0314250:CDS |
| TTTCTTGTGACGTTCTTGTT+AGG | 0.362919 | 2_4:-9973454 | None:intergenic |
| CGAGTCGAGTTGGCCAATAT+TGG | 0.365906 | 2_4:+9976615 | Msa0314250:CDS |
| GGCTCAGTTGCAACTGGATC+AGG | 0.370479 | 2_4:-9976344 | None:intergenic |
| AACAAGAACGTCACAAGAAA+TGG | 0.373690 | 2_4:+9973457 | Msa0314250:CDS |
| TTATTATAATCAGTAGTAAC+CGG | 0.377060 | 2_4:-9976542 | None:intergenic |
| CGGATGTCTTTGAAAATAAG+AGG | 0.384067 | 2_4:-9976195 | None:intergenic |
| AACTTGTCATGGTGTTTAAC+TGG | 0.386459 | 2_4:-9973300 | None:intergenic |
| TTTATCAGACCTTGAGTTTG+AGG | 0.393633 | 2_4:+9973504 | Msa0314250:CDS |
| TTTCTTGAATTTGATGATGT+TGG | 0.395037 | 2_4:-9973228 | None:intergenic |
| AAGAAACCTGGGAATGAGTT+AGG | 0.397323 | 2_4:+9975954 | Msa0314250:CDS |
| GTAAAAGGGTTCATGGATCT+TGG | 0.397551 | 2_4:+9973529 | Msa0314250:CDS |
| TTCATGTCAACTTCATTAGT+AGG | 0.399570 | 2_4:-9973748 | None:intergenic |
| ACAGTACTCGAAGGGTCATT+TGG | 0.400137 | 2_4:+9975878 | Msa0314250:CDS |
| TGAGGAGGTAAAAGGGTTCA+TGG | 0.400518 | 2_4:+9973522 | Msa0314250:CDS |
| GGTTGGACAAGGACAGAGTT+TGG | 0.405732 | 2_4:-9973343 | None:intergenic |
| ATTCCTGGTTTGCAAAGGTT+AGG | 0.414865 | 2_4:+9973598 | Msa0314250:CDS |
| TGTAATCGTTGTTCCTAATC+CGG | 0.417246 | 2_4:+9976409 | Msa0314250:CDS |
| TTCCCTAACCTTTGCAAACC+AGG | 0.424502 | 2_4:-9973601 | None:intergenic |
| ATGTGATGATGGAAGACAAA+AGG | 0.433322 | 2_4:+9974524 | Msa0314250:CDS |
| ACCGCTGGCTCAGTTGCAAC+CGG | 0.439728 | 2_4:-9976428 | None:intergenic |
| GTTTCTTGAACTTCAGAGAA+AGG | 0.439975 | 2_4:+9975824 | Msa0314250:CDS |
| ACATCTGGCTCAGTTGCAAC+TGG | 0.441122 | 2_4:-9976350 | None:intergenic |
| TTCCTGGTTTGCAAAGGTTA+GGG | 0.442705 | 2_4:+9973599 | Msa0314250:CDS |
| GAAATATAGTCTCAAATGTT+GGG | 0.446438 | 2_4:+9973768 | Msa0314250:CDS |
| CATGTCGACTTCTAGTGACT+TGG | 0.447575 | 2_4:-9976297 | None:intergenic |
| GAGAAAAGGAGGCACCTTAT+CGG | 0.448416 | 2_4:-9974798 | None:intergenic |
| GACCTTACCTTTCTGAAGCA+TGG | 0.450117 | 2_4:+9973668 | Msa0314250:CDS |
| TGAAATATAGTCTCAAATGT+TGG | 0.461940 | 2_4:+9973767 | Msa0314250:CDS |
| TTAGGATTAACAACTACATC+TGG | 0.472983 | 2_4:-9976365 | None:intergenic |
| CAGGAAGGACACTATCAACT+TGG | 0.473159 | 2_4:+9974433 | Msa0314250:intron |
| GATGACTCAATGAATTATGT+AGG | 0.484303 | 2_4:+9976230 | Msa0314250:CDS |
| TGTGATGATGGAAGACAAAA+GGG | 0.485841 | 2_4:+9974525 | Msa0314250:CDS |
| GTTTGGCTTTCAAAATTTGA+AGG | 0.487218 | 2_4:+9973165 | Msa0314250:CDS |
| CGAATCATCAATGACAAGTT+GGG | 0.487340 | 2_4:+9976148 | Msa0314250:CDS |
| ACAATACTTGCAGGACGAAT+CGG | 0.489021 | 2_4:+9976577 | Msa0314250:CDS |
| CATGAGCATTCTGCGAAGAA+TGG | 0.490641 | 2_4:-9975713 | None:intergenic |
| CATATACCTAACTCATTCCC+AGG | 0.495219 | 2_4:-9975960 | None:intergenic |
| GAGTCATCAAAATCTACATT+CGG | 0.497020 | 2_4:-9976215 | None:intergenic |
| TCATAAGTCTTAGTGAGAAA+AGG | 0.497418 | 2_4:-9974812 | None:intergenic |
| TGAACTTCAGAGAAAGGAAG+AGG | 0.498686 | 2_4:+9975830 | Msa0314250:CDS |
| TCGCAGAATGCTCATGGCCA+AGG | 0.501991 | 2_4:+9975720 | Msa0314250:CDS |
| ACCTTACCTTTCTGAAGCAT+GGG | 0.502044 | 2_4:+9973669 | Msa0314250:CDS |
| GGTCAAGTGCTGAAGAAACC+TGG | 0.503718 | 2_4:+9975942 | Msa0314250:CDS |
| TCGAATCATCAATGACAAGT+TGG | 0.505281 | 2_4:+9976147 | Msa0314250:CDS |
| TTATTATGGTTAAAGTATTG+AGG | 0.507346 | 2_4:-9974935 | None:intergenic |
| CGCAGAATGCTCATGGCCAA+GGG | 0.508087 | 2_4:+9975721 | Msa0314250:CDS |
| TGTCAAAGAATCGTAGTACA+TGG | 0.512266 | 2_4:+9974484 | Msa0314250:CDS |
| GAAACAATGTCATCAGTTGA+AGG | 0.519956 | 2_4:-9974848 | None:intergenic |
| TCAACTTCATTAGTAGGAGC+AGG | 0.522419 | 2_4:-9973742 | None:intergenic |
| CAATATTGGCCAACTCGACT+CGG | 0.523538 | 2_4:-9976614 | None:intergenic |
| CTAGTGGAGCAGCAACCCCT+TGG | 0.524076 | 2_4:-9975737 | None:intergenic |
| GGTGTTTAACTGGTCACTCA+TGG | 0.527991 | 2_4:-9973290 | None:intergenic |
| AAAAGTTGATACACAACTAT+GGG | 0.529213 | 2_4:+9975614 | Msa0314250:CDS |
| TTGAGTTTGAGGAGGTAAAA+GGG | 0.532051 | 2_4:+9973515 | Msa0314250:CDS |
| GAGAGGATTGTTTGAAGCTG+TGG | 0.532154 | 2_4:-9973364 | None:intergenic |
| AGAAATGGAAGAAGGAAAAG+TGG | 0.534698 | 2_4:+9973472 | Msa0314250:CDS |
| CAGCTTCAAACAATCCTCTC+AGG | 0.536712 | 2_4:+9973367 | Msa0314250:CDS |
| TCAGGGTAGTAGTTCCGATA+AGG | 0.544906 | 2_4:+9974784 | Msa0314250:intron |
| AAAGGGTTTCTGCAAAGAGA+TGG | 0.545990 | 2_4:+9974542 | Msa0314250:CDS |
| CATTCTTCGCAGAATGCTCA+TGG | 0.549403 | 2_4:+9975714 | Msa0314250:CDS |
| CAATCATTCCTGGTTTGCAA+AGG | 0.550217 | 2_4:+9973593 | Msa0314250:CDS |
| TGTCGATCGGATTCTGCTAG+TGG | 0.551922 | 2_4:-9975753 | None:intergenic |
| CAAAGTGTGCTCTCTTATGT+TGG | 0.554182 | 2_4:+9975921 | Msa0314250:CDS |
| ATGTCGACTTCTAGTGACTT+GGG | 0.560272 | 2_4:-9976296 | None:intergenic |
| GGAAGATAAAGACACAAGCT+TGG | 0.560492 | 2_4:+9973567 | Msa0314250:CDS |
| GGATTGTTTGAAGCTGTGGT+TGG | 0.563182 | 2_4:-9973360 | None:intergenic |
| TAAGACTTATGATATGGTTG+AGG | 0.565627 | 2_4:+9974823 | Msa0314250:CDS |
| ACGTCACAAGAAATGGAAGA+AGG | 0.567190 | 2_4:+9973464 | Msa0314250:CDS |
| AGCATTCAATGTCTGTCGAT+CGG | 0.568118 | 2_4:-9975766 | None:intergenic |
| AGCTAGCATTGAAGATCATG+TGG | 0.568546 | 2_4:+9976046 | Msa0314250:CDS |
| GGATCAGGAACAACTACCAC+TGG | 0.574913 | 2_4:-9976329 | None:intergenic |
| AAGAATCGTAGTACATGGGA+AGG | 0.575316 | 2_4:+9974489 | Msa0314250:CDS |
| TCCCATGCTTCAGAAAGGTA+AGG | 0.575358 | 2_4:-9973670 | None:intergenic |
| TGTCAAAGAACATGTGATGA+TGG | 0.578592 | 2_4:+9974513 | Msa0314250:CDS |
| GATAAAATTACAGTACTCGA+AGG | 0.578742 | 2_4:+9975869 | Msa0314250:CDS |
| ACTGATGACATTGTTTCTTG+GGG | 0.579964 | 2_4:+9974854 | Msa0314250:CDS |
| GTCAAGTGCTGAAGAAACCT+GGG | 0.583533 | 2_4:+9975943 | Msa0314250:CDS |
| GATCCTCCCATGCTTCAGAA+AGG | 0.586388 | 2_4:-9973675 | None:intergenic |
| TCAGGGACAACTGCAACAGT+TGG | 0.589380 | 2_4:-9976482 | None:intergenic |
| GAAGATATACCGAGTCGAGT+TGG | 0.590581 | 2_4:+9976605 | Msa0314250:CDS |
| TCAGAATCATCGATTACCGC+TGG | 0.591006 | 2_4:-9976443 | None:intergenic |
| TTACCTTTCTGAAGCATGGG+AGG | 0.592142 | 2_4:+9973672 | Msa0314250:CDS |
| TATTATAATCAGTAGTAACC+GGG | 0.593232 | 2_4:-9976541 | None:intergenic |
| TTTGAAGCTGTGGTTGGACA+AGG | 0.594695 | 2_4:-9973354 | None:intergenic |
| AGGAACAACTACCACTGGCA+TGG | 0.597086 | 2_4:-9976324 | None:intergenic |
| ATCAGACCTTGAGTTTGAGG+AGG | 0.598693 | 2_4:+9973507 | Msa0314250:CDS |
| GTATCAAAACCAAACATACA+AGG | 0.602893 | 2_4:+9973266 | Msa0314250:CDS |
| CTTCTGGTTCAACAAAATCA+GGG | 0.603287 | 2_4:-9976499 | None:intergenic |
| TCCGGTTGCAACTGAGCCAG+CGG | 0.609490 | 2_4:+9976427 | Msa0314250:CDS |
| GTCATTTGGAAACAGTGGAA+AGG | 0.611941 | 2_4:+9975892 | Msa0314250:CDS |
| TAAGTCTTAGTGAGAAAAGG+AGG | 0.624943 | 2_4:-9974809 | None:intergenic |
| ATCTTATGAAGAATATCCAA+AGG | 0.635890 | 2_4:+9975673 | Msa0314250:CDS |
| GTCAAAGAATCGTAGTACAT+GGG | 0.636000 | 2_4:+9974485 | Msa0314250:CDS |
| ATAAAATTACAGTACTCGAA+GGG | 0.640506 | 2_4:+9975870 | Msa0314250:CDS |
| GTCTCTTGTATCATTAAACG+TGG | 0.643044 | 2_4:+9976109 | Msa0314250:CDS |
| GTAACCGGGGATGTTACGAC+GGG | 0.648034 | 2_4:-9976527 | None:intergenic |
| ACAACCCGTCGTAACATCCC+CGG | 0.648155 | 2_4:+9976523 | Msa0314250:CDS |
| ATCATGTTTGAAACTTGTCA+TGG | 0.648612 | 2_4:-9973311 | None:intergenic |
| ATCATCAATGACAAGTTGGG+AGG | 0.652244 | 2_4:+9976151 | Msa0314250:CDS |
| AGAATCGTAGTACATGGGAA+GGG | 0.674077 | 2_4:+9974490 | Msa0314250:CDS |
| CGACATGAACTCCATGCCAG+TGG | 0.675176 | 2_4:+9976313 | Msa0314250:CDS |
| GCTAGCATTGAAGATCATGT+GGG | 0.675912 | 2_4:+9976047 | Msa0314250:CDS |
| AATGATACAAGAGACACACT+CGG | 0.677326 | 2_4:-9976101 | None:intergenic |
| AGTAACCGGGGATGTTACGA+CGG | 0.681684 | 2_4:-9976528 | None:intergenic |
| GAAGGGTCATTTGGAAACAG+TGG | 0.685082 | 2_4:+9975887 | Msa0314250:CDS |
| ATGATACAAGAGACACACTC+GGG | 0.691023 | 2_4:-9976100 | None:intergenic |
| ATTATAATCAGTAGTAACCG+GGG | 0.692233 | 2_4:-9976540 | None:intergenic |
| GCAGAATGCTCATGGCCAAG+GGG | 0.714345 | 2_4:+9975722 | Msa0314250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGTTTTTTTATTAAGT+TGG | - | chr2_4:9975420-9975439 | None:intergenic | 10.0% |
| !!! | TGATTATAATAATGAATTTT+GGG | + | chr2_4:9976553-9976572 | Msa0314250:CDS | 10.0% |
| !!! | TTTTTTAAATCATTCCATTA+AGG | + | chr2_4:9975091-9975110 | Msa0314250:intron | 15.0% |
| !!! | CTGATTATAATAATGAATTT+TGG | + | chr2_4:9976552-9976571 | Msa0314250:CDS | 15.0% |
| !!! | GATTATAATAATGAATTTTG+GGG | + | chr2_4:9976554-9976573 | Msa0314250:CDS | 15.0% |
| !! | AAGATAAACCTTTAATGAAA+TGG | + | chr2_4:9973713-9973732 | Msa0314250:CDS | 20.0% |
| !! | CAACAAATTTCAGAAAATAA+TGG | - | chr2_4:9973922-9973941 | None:intergenic | 20.0% |
| !!! | CATTATTTTCTGAAATTTGT+TGG | + | chr2_4:9973920-9973939 | Msa0314250:intron | 20.0% |
| !!! | TAATCTTAGACTAAAAGTAT+GGG | + | chr2_4:9973971-9973990 | Msa0314250:intron | 20.0% |
| !! | NNNNNNNNNNAAGAAGCTCA+GGG | + | chr2_4:9974767-9974786 | Msa0314250:intron | 20.0% |
| !!! | TTATTATGGTTAAAGTATTG+AGG | - | chr2_4:9974938-9974957 | None:intergenic | 20.0% |
| !! | AAGCAATAAAAAAACCTTAA+TGG | - | chr2_4:9975108-9975127 | None:intergenic | 20.0% |
| !!! | TTAAGCTTATGTATTTTCAT+AGG | + | chr2_4:9975224-9975243 | Msa0314250:intron | 20.0% |
| !! | ATAAAAGAACAAAGCTTAAT+TGG | - | chr2_4:9975375-9975394 | None:intergenic | 20.0% |
| !! | TTATTATAATCAGTAGTAAC+CGG | - | chr2_4:9976545-9976564 | None:intergenic | 20.0% |
| !!! | TTTCTTGAATTTGATGATGT+TGG | - | chr2_4:9973231-9973250 | None:intergenic | 25.0% |
| !! | GGAATTTTCCATTTCATTAA+AGG | - | chr2_4:9973724-9973743 | None:intergenic | 25.0% |
| ! | TGAAATATAGTCTCAAATGT+TGG | + | chr2_4:9973767-9973786 | Msa0314250:CDS | 25.0% |
| ! | GAAATATAGTCTCAAATGTT+GGG | + | chr2_4:9973768-9973787 | Msa0314250:CDS | 25.0% |
| !! | TTGAGGTTGTATTTGAATTT+TGG | + | chr2_4:9973860-9973879 | Msa0314250:intron | 25.0% |
| ! | GTAATCTTAGACTAAAAGTA+TGG | + | chr2_4:9973970-9973989 | Msa0314250:intron | 25.0% |
| ! | AATTGGATTACAAATAGTTC+AGG | + | chr2_4:9974084-9974103 | Msa0314250:intron | 25.0% |
| !! | CATATACAATTTGTTTGTCA+AGG | - | chr2_4:9974229-9974248 | None:intergenic | 25.0% |
| ! | GACAAACAAATTGTATATGT+AGG | + | chr2_4:9974230-9974249 | Msa0314250:intron | 25.0% |
| ! | ACAAATTGTATATGTAGGAA+AGG | + | chr2_4:9974235-9974254 | Msa0314250:intron | 25.0% |
| ! | TAAAAGCAGAAAAACATTTC+AGG | + | chr2_4:9974576-9974595 | Msa0314250:CDS | 25.0% |
| !!! | CTGATGAAAGTTTTATTGTT+TGG | + | chr2_4:9974882-9974901 | Msa0314250:CDS | 25.0% |
| ! | TGAAACTTGAGAAGTTATTA+TGG | - | chr2_4:9974952-9974971 | None:intergenic | 25.0% |
| ! | CTTTAATGTACTTCATTTCA+TGG | + | chr2_4:9975000-9975019 | Msa0314250:intron | 25.0% |
| ! | AGCAATCAATAAACCTTAAT+GGG | - | chr2_4:9975555-9975574 | None:intergenic | 25.0% |
| ! | AAGCAATCAATAAACCTTAA+TGG | - | chr2_4:9975556-9975575 | None:intergenic | 25.0% |
| !!! | AAAAGTTGATACACAACTAT+GGG | + | chr2_4:9975614-9975633 | Msa0314250:CDS | 25.0% |
| ! | ATCTTATGAAGAATATCCAA+AGG | + | chr2_4:9975673-9975692 | Msa0314250:CDS | 25.0% |
| ! | ATAAAATTACAGTACTCGAA+GGG | + | chr2_4:9975870-9975889 | Msa0314250:CDS | 25.0% |
| !! | TTACAAAAAGGATTGTTTCT+CGG | - | chr2_4:9976023-9976042 | None:intergenic | 25.0% |
| ! | GAGGAGATTAAAAATTATCT+TGG | + | chr2_4:9976170-9976189 | Msa0314250:CDS | 25.0% |
| ! | TATTATAATCAGTAGTAACC+GGG | - | chr2_4:9976544-9976563 | None:intergenic | 25.0% |
| ! | TGAAGCTTTTTGATACTTGT+TGG | + | chr2_4:9973143-9973162 | Msa0314250:CDS | 30.0% |
| !! | CTTTTTGATACTTGTTGGTT+TGG | + | chr2_4:9973148-9973167 | Msa0314250:CDS | 30.0% |
| !! | GTTTGGCTTTCAAAATTTGA+AGG | + | chr2_4:9973165-9973184 | Msa0314250:CDS | 30.0% |
| GTATCAAAACCAAACATACA+AGG | + | chr2_4:9973266-9973285 | Msa0314250:CDS | 30.0% | |
| ! | ATCATGTTTGAAACTTGTCA+TGG | - | chr2_4:9973314-9973333 | None:intergenic | 30.0% |
| TTCATGTCAACTTCATTAGT+AGG | - | chr2_4:9973751-9973770 | None:intergenic | 30.0% | |
| CAAAGTACGTAATGAAAAGA+GGG | - | chr2_4:9973888-9973907 | None:intergenic | 30.0% | |
| ACAAAGTACGTAATGAAAAG+AGG | - | chr2_4:9973889-9973908 | None:intergenic | 30.0% | |
| ACCAGAAAACATGAACAAAT+TGG | + | chr2_4:9974067-9974086 | Msa0314250:intron | 30.0% | |
| !! | TCCAATTTGTTCATGTTTTC+TGG | - | chr2_4:9974071-9974090 | None:intergenic | 30.0% |
| ATCAGATTGAACGTTATAAG+AGG | + | chr2_4:9974610-9974629 | Msa0314250:intron | 30.0% | |
| TCAGATTGAACGTTATAAGA+GGG | + | chr2_4:9974611-9974630 | Msa0314250:intron | 30.0% | |
| TCATAAGTCTTAGTGAGAAA+AGG | - | chr2_4:9974815-9974834 | None:intergenic | 30.0% | |
| TCTCACTAAGACTTATGATA+TGG | + | chr2_4:9974817-9974836 | Msa0314250:CDS | 30.0% | |
| TAAGACTTATGATATGGTTG+AGG | + | chr2_4:9974823-9974842 | Msa0314250:CDS | 30.0% | |
| ! | AACTGATGACATTGTTTCTT+GGG | + | chr2_4:9974853-9974872 | Msa0314250:CDS | 30.0% |
| GTTAGCAAAATTGATCATTG+TGG | + | chr2_4:9975161-9975180 | Msa0314250:intron | 30.0% | |
| !!! | TTTTTATTAAGTTGGCAGTG+AGG | - | chr2_4:9975412-9975431 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTATCACCCATTA+AGG | + | chr2_4:9975539-9975558 | Msa0314250:intron | 30.0% |
| ! | TTGAACTGTCTTATGGTTTT+TGG | + | chr2_4:9975574-9975593 | Msa0314250:intron | 30.0% |
| !!! | TTATGGTTTTTGGTTTGATC+AGG | + | chr2_4:9975584-9975603 | Msa0314250:intron | 30.0% |
| !!! | TATGGTTTTTGGTTTGATCA+GGG | + | chr2_4:9975585-9975604 | Msa0314250:intron | 30.0% |
| !! | GAAAAGTTGATACACAACTA+TGG | + | chr2_4:9975613-9975632 | Msa0314250:CDS | 30.0% |
| GATAAAATTACAGTACTCGA+AGG | + | chr2_4:9975869-9975888 | Msa0314250:CDS | 30.0% | |
| CAAAAACTACAAAGCGAAAA+AGG | + | chr2_4:9975991-9976010 | Msa0314250:CDS | 30.0% | |
| ATGCTAGCTACATTACAAAA+AGG | - | chr2_4:9976035-9976054 | None:intergenic | 30.0% | |
| GAGTCATCAAAATCTACATT+CGG | - | chr2_4:9976218-9976237 | None:intergenic | 30.0% | |
| GATGACTCAATGAATTATGT+AGG | + | chr2_4:9976230-9976249 | Msa0314250:CDS | 30.0% | |
| AGTTGCATACAAGATGTTAT+TGG | - | chr2_4:9976260-9976279 | None:intergenic | 30.0% | |
| TTAGGATTAACAACTACATC+TGG | - | chr2_4:9976368-9976387 | None:intergenic | 30.0% | |
| ATTATAATCAGTAGTAACCG+GGG | - | chr2_4:9976543-9976562 | None:intergenic | 30.0% | |
| !! | GTTTTGATACGAGAAAGCAT+TGG | - | chr2_4:9973256-9973275 | None:intergenic | 35.0% |
| AACTTGTCATGGTGTTTAAC+TGG | - | chr2_4:9973303-9973322 | None:intergenic | 35.0% | |
| TTTCTTGTGACGTTCTTGTT+AGG | - | chr2_4:9973457-9973476 | None:intergenic | 35.0% | |
| AACAAGAACGTCACAAGAAA+TGG | + | chr2_4:9973457-9973476 | Msa0314250:CDS | 35.0% | |
| AGAAATGGAAGAAGGAAAAG+TGG | + | chr2_4:9973472-9973491 | Msa0314250:CDS | 35.0% | |
| TTTATCAGACCTTGAGTTTG+AGG | + | chr2_4:9973504-9973523 | Msa0314250:CDS | 35.0% | |
| TTGAGTTTGAGGAGGTAAAA+GGG | + | chr2_4:9973515-9973534 | Msa0314250:CDS | 35.0% | |
| !!! | TCTTGGTTTTGTTTTCTCAG+AGG | + | chr2_4:9973546-9973565 | Msa0314250:CDS | 35.0% |
| TTGCAAAGGTTAGGGAAAAA+TGG | + | chr2_4:9973607-9973626 | Msa0314250:CDS | 35.0% | |
| CTGTTAGATGATGAAGTTCA+TGG | + | chr2_4:9973809-9973828 | Msa0314250:intron | 35.0% | |
| ATGATGAAGTTCATGGTTCA+AGG | + | chr2_4:9973816-9973835 | Msa0314250:intron | 35.0% | |
| GAACTAACAGATCCAATAAC+CGG | - | chr2_4:9974006-9974025 | None:intergenic | 35.0% | |
| GATCTGTTAGTTCAGTTTGT+AGG | + | chr2_4:9974013-9974032 | Msa0314250:intron | 35.0% | |
| TACAAATAGTTCAGGCATTC+AGG | + | chr2_4:9974092-9974111 | Msa0314250:intron | 35.0% | |
| ACAAATAGTTCAGGCATTCA+GGG | + | chr2_4:9974093-9974112 | Msa0314250:intron | 35.0% | |
| TGTAACCTTACAACTCTACT+TGG | + | chr2_4:9974126-9974145 | Msa0314250:intron | 35.0% | |
| ! | GATGTAGTAGCTGTTTGTTT+TGG | + | chr2_4:9974272-9974291 | Msa0314250:intron | 35.0% |
| CACAAGTGTTTGTAGAAGTT+AGG | - | chr2_4:9974399-9974418 | None:intergenic | 35.0% | |
| TTGTGACTACTCTTATCAAC+AGG | + | chr2_4:9974414-9974433 | Msa0314250:intron | 35.0% | |
| TGTCAAAGAATCGTAGTACA+TGG | + | chr2_4:9974484-9974503 | Msa0314250:CDS | 35.0% | |
| GTCAAAGAATCGTAGTACAT+GGG | + | chr2_4:9974485-9974504 | Msa0314250:CDS | 35.0% | |
| TGTCAAAGAACATGTGATGA+TGG | + | chr2_4:9974513-9974532 | Msa0314250:CDS | 35.0% | |
| !! | ATGTGATGATGGAAGACAAA+AGG | + | chr2_4:9974524-9974543 | Msa0314250:CDS | 35.0% |
| !! | TGTGATGATGGAAGACAAAA+GGG | + | chr2_4:9974525-9974544 | Msa0314250:CDS | 35.0% |
| ATTGAACGTTATAAGAGGGA+GGG | + | chr2_4:9974615-9974634 | Msa0314250:intron | 35.0% | |
| ! | CAATGCTTTTCTGATTGCAT+TGG | - | chr2_4:9974646-9974665 | None:intergenic | 35.0% |
| ! | CAATGCAATCAGAAAAGCAT+TGG | + | chr2_4:9974644-9974663 | Msa0314250:intron | 35.0% |
| TAAGTCTTAGTGAGAAAAGG+AGG | - | chr2_4:9974812-9974831 | None:intergenic | 35.0% | |
| GAAACAATGTCATCAGTTGA+AGG | - | chr2_4:9974851-9974870 | None:intergenic | 35.0% | |
| ! | CAACTGATGACATTGTTTCT+TGG | + | chr2_4:9974852-9974871 | Msa0314250:CDS | 35.0% |
| ! | ACTGATGACATTGTTTCTTG+GGG | + | chr2_4:9974854-9974873 | Msa0314250:CDS | 35.0% |
| CAGCTTAATACCTATGTAAG+CGG | + | chr2_4:9974977-9974996 | Msa0314250:intron | 35.0% | |
| TACATTAAAGCCGCTTACAT+AGG | - | chr2_4:9974990-9975009 | None:intergenic | 35.0% | |
| TGATTGCTTGAACTGTCTTA+TGG | + | chr2_4:9975567-9975586 | Msa0314250:intron | 35.0% | |
| ! | TATAAACTGTTTTGCGCCTT+TGG | - | chr2_4:9975692-9975711 | None:intergenic | 35.0% |
| GTTTCTTGAACTTCAGAGAA+AGG | + | chr2_4:9975824-9975843 | Msa0314250:CDS | 35.0% | |
| AAACTACAAAGCGAAAAAGG+AGG | + | chr2_4:9975994-9976013 | Msa0314250:CDS | 35.0% | |
| AATGATACAAGAGACACACT+CGG | - | chr2_4:9976104-9976123 | None:intergenic | 35.0% | |
| GTCTCTTGTATCATTAAACG+TGG | + | chr2_4:9976109-9976128 | Msa0314250:CDS | 35.0% | |
| TCGAATCATCAATGACAAGT+TGG | + | chr2_4:9976147-9976166 | Msa0314250:CDS | 35.0% | |
| CGAATCATCAATGACAAGTT+GGG | + | chr2_4:9976148-9976167 | Msa0314250:CDS | 35.0% | |
| ! | CGGATGTCTTTGAAAATAAG+AGG | - | chr2_4:9976198-9976217 | None:intergenic | 35.0% |
| TGTAATCGTTGTTCCTAATC+CGG | + | chr2_4:9976409-9976428 | Msa0314250:CDS | 35.0% | |
| !! | CTTCTGGTTCAACAAAATCA+GGG | - | chr2_4:9976502-9976521 | None:intergenic | 35.0% |
| !! | TCTTCTGGTTCAACAAAATC+AGG | - | chr2_4:9976503-9976522 | None:intergenic | 35.0% |
| ACTCATGGACCTTGTATGTT+TGG | - | chr2_4:9973278-9973297 | None:intergenic | 40.0% | |
| ACGTCACAAGAAATGGAAGA+AGG | + | chr2_4:9973464-9973483 | Msa0314250:CDS | 40.0% | |
| ! | CTTTTACCTCCTCAAACTCA+AGG | - | chr2_4:9973516-9973535 | None:intergenic | 40.0% |
| CTTGAGTTTGAGGAGGTAAA+AGG | + | chr2_4:9973514-9973533 | Msa0314250:CDS | 40.0% | |
| GTAAAAGGGTTCATGGATCT+TGG | + | chr2_4:9973529-9973548 | Msa0314250:CDS | 40.0% | |
| GGAAGATAAAGACACAAGCT+TGG | + | chr2_4:9973567-9973586 | Msa0314250:CDS | 40.0% | |
| AGCTTGGTTTCAATCATTCC+TGG | + | chr2_4:9973583-9973602 | Msa0314250:CDS | 40.0% | |
| ! | CAATCATTCCTGGTTTGCAA+AGG | + | chr2_4:9973593-9973612 | Msa0314250:CDS | 40.0% |
| ! | ATTCCTGGTTTGCAAAGGTT+AGG | + | chr2_4:9973598-9973617 | Msa0314250:CDS | 40.0% |
| ! | TTCCTGGTTTGCAAAGGTTA+GGG | + | chr2_4:9973599-9973618 | Msa0314250:CDS | 40.0% |
| !! | ACCTTACCTTTCTGAAGCAT+GGG | + | chr2_4:9973669-9973688 | Msa0314250:CDS | 40.0% |
| TCAACTTCATTAGTAGGAGC+AGG | - | chr2_4:9973745-9973764 | None:intergenic | 40.0% | |
| ! | GTTCATGGTTCAAGGTTTTC+TGG | + | chr2_4:9973824-9973843 | Msa0314250:intron | 40.0% |
| !! | CTGGTTTGCTTGTATCATTG+AGG | + | chr2_4:9973843-9973862 | Msa0314250:intron | 40.0% |
| !!! | GTAGTAGCTGTTTGTTTTGG+CGG | + | chr2_4:9974275-9974294 | Msa0314250:intron | 40.0% |
| ! | TTTTGGCGGTGTATGAAAAG+TGG | + | chr2_4:9974289-9974308 | Msa0314250:intron | 40.0% |
| CTACATTCCTCTTGAATGCA+CGG | + | chr2_4:9974360-9974379 | Msa0314250:intron | 40.0% | |
| GACTACTCTTATCAACAGGA+AGG | + | chr2_4:9974418-9974437 | Msa0314250:intron | 40.0% | |
| AAGAATCGTAGTACATGGGA+AGG | + | chr2_4:9974489-9974508 | Msa0314250:CDS | 40.0% | |
| AGAATCGTAGTACATGGGAA+GGG | + | chr2_4:9974490-9974509 | Msa0314250:CDS | 40.0% | |
| AAAGGGTTTCTGCAAAGAGA+TGG | + | chr2_4:9974542-9974561 | Msa0314250:CDS | 40.0% | |
| GATTGAACGTTATAAGAGGG+AGG | + | chr2_4:9974614-9974633 | Msa0314250:intron | 40.0% | |
| AGCATTCAATGTCTGTCGAT+CGG | - | chr2_4:9975769-9975788 | None:intergenic | 40.0% | |
| TGAACTTCAGAGAAAGGAAG+AGG | + | chr2_4:9975830-9975849 | Msa0314250:CDS | 40.0% | |
| GTCATTTGGAAACAGTGGAA+AGG | + | chr2_4:9975892-9975911 | Msa0314250:CDS | 40.0% | |
| CAAAGTGTGCTCTCTTATGT+TGG | + | chr2_4:9975921-9975940 | Msa0314250:CDS | 40.0% | |
| AAGAAACCTGGGAATGAGTT+AGG | + | chr2_4:9975954-9975973 | Msa0314250:CDS | 40.0% | |
| CATATACCTAACTCATTCCC+AGG | - | chr2_4:9975963-9975982 | None:intergenic | 40.0% | |
| ! | CGCTTTGTAGTTTTTGTCAG+TGG | - | chr2_4:9975987-9976006 | None:intergenic | 40.0% |
| ! | AGCTAGCATTGAAGATCATG+TGG | + | chr2_4:9976046-9976065 | Msa0314250:CDS | 40.0% |
| ! | GCTAGCATTGAAGATCATGT+GGG | + | chr2_4:9976047-9976066 | Msa0314250:CDS | 40.0% |
| ATGATACAAGAGACACACTC+GGG | - | chr2_4:9976103-9976122 | None:intergenic | 40.0% | |
| ! | ATCATCAATGACAAGTTGGG+AGG | + | chr2_4:9976151-9976170 | Msa0314250:CDS | 40.0% |
| !! | ATGTCGACTTCTAGTGACTT+GGG | - | chr2_4:9976299-9976318 | None:intergenic | 40.0% |
| AGCTCAGTTGCATCATGATT+AGG | - | chr2_4:9976386-9976405 | None:intergenic | 40.0% | |
| !! | ATTTTGGGGACAATACTTGC+AGG | + | chr2_4:9976568-9976587 | Msa0314250:CDS | 40.0% |
| ACAATACTTGCAGGACGAAT+CGG | + | chr2_4:9976577-9976596 | Msa0314250:CDS | 40.0% | |
| ! | CTCTTTTGGTACGCCAATAT+TGG | - | chr2_4:9976631-9976650 | None:intergenic | 40.0% |
| GGTGTTTAACTGGTCACTCA+TGG | - | chr2_4:9973293-9973312 | None:intergenic | 45.0% | |
| ! | TTTGAAGCTGTGGTTGGACA+AGG | - | chr2_4:9973357-9973376 | None:intergenic | 45.0% |
| ! | GGATTGTTTGAAGCTGTGGT+TGG | - | chr2_4:9973363-9973382 | None:intergenic | 45.0% |
| ! | GAGAGGATTGTTTGAAGCTG+TGG | - | chr2_4:9973367-9973386 | None:intergenic | 45.0% |
| CAGCTTCAAACAATCCTCTC+AGG | + | chr2_4:9973367-9973386 | Msa0314250:CDS | 45.0% | |
| ! | CTGTGACATCTTTTCCTGAG+AGG | - | chr2_4:9973384-9973403 | None:intergenic | 45.0% |
| ATCAGACCTTGAGTTTGAGG+AGG | + | chr2_4:9973507-9973526 | Msa0314250:CDS | 45.0% | |
| TGAGGAGGTAAAAGGGTTCA+TGG | + | chr2_4:9973522-9973541 | Msa0314250:CDS | 45.0% | |
| TTCCCTAACCTTTGCAAACC+AGG | - | chr2_4:9973604-9973623 | None:intergenic | 45.0% | |
| !! | GACCTTACCTTTCTGAAGCA+TGG | + | chr2_4:9973668-9973687 | Msa0314250:CDS | 45.0% |
| TCCCATGCTTCAGAAAGGTA+AGG | - | chr2_4:9973673-9973692 | None:intergenic | 45.0% | |
| !! | TTACCTTTCTGAAGCATGGG+AGG | + | chr2_4:9973672-9973691 | Msa0314250:CDS | 45.0% |
| AAAGTATGGGAATGTCGCTC+CGG | + | chr2_4:9973984-9974003 | Msa0314250:intron | 45.0% | |
| GAAGGCCAAGTAGAGTTGTA+AGG | - | chr2_4:9974134-9974153 | None:intergenic | 45.0% | |
| GACTTGATACATCACCTCGA+AGG | - | chr2_4:9974152-9974171 | None:intergenic | 45.0% | |
| CGAGGTGATGTATCAAGTCA+TGG | + | chr2_4:9974153-9974172 | Msa0314250:intron | 45.0% | |
| CAGGAAGGACACTATCAACT+TGG | + | chr2_4:9974433-9974452 | Msa0314250:intron | 45.0% | |
| TCAGGGTAGTAGTTCCGATA+AGG | + | chr2_4:9974784-9974803 | Msa0314250:intron | 45.0% | |
| !! | GAGAAAAGGAGGCACCTTAT+CGG | - | chr2_4:9974801-9974820 | None:intergenic | 45.0% |
| CATGAGCATTCTGCGAAGAA+TGG | - | chr2_4:9975716-9975735 | None:intergenic | 45.0% | |
| CATTCTTCGCAGAATGCTCA+TGG | + | chr2_4:9975714-9975733 | Msa0314250:CDS | 45.0% | |
| ACAGTACTCGAAGGGTCATT+TGG | + | chr2_4:9975878-9975897 | Msa0314250:CDS | 45.0% | |
| GAAGGGTCATTTGGAAACAG+TGG | + | chr2_4:9975887-9975906 | Msa0314250:CDS | 45.0% | |
| !! | GTCAAGTGCTGAAGAAACCT+GGG | + | chr2_4:9975943-9975962 | Msa0314250:CDS | 45.0% |
| !! | CATGTCGACTTCTAGTGACT+TGG | - | chr2_4:9976300-9976319 | None:intergenic | 45.0% |
| ! | TCAGAATCATCGATTACCGC+TGG | - | chr2_4:9976446-9976465 | None:intergenic | 45.0% |
| GAAGATATACCGAGTCGAGT+TGG | + | chr2_4:9976605-9976624 | Msa0314250:CDS | 45.0% | |
| CAATATTGGCCAACTCGACT+CGG | - | chr2_4:9976617-9976636 | None:intergenic | 45.0% | |
| GGTTGGACAAGGACAGAGTT+TGG | - | chr2_4:9973346-9973365 | None:intergenic | 50.0% | |
| GATCCTCCCATGCTTCAGAA+AGG | - | chr2_4:9973678-9973697 | None:intergenic | 50.0% | |
| TAGTTCAGGCATTCAGGGAG+AGG | + | chr2_4:9974098-9974117 | Msa0314250:intron | 50.0% | |
| AGTTCAGGCATTCAGGGAGA+GGG | + | chr2_4:9974099-9974118 | Msa0314250:intron | 50.0% | |
| ! | ACAACTCTACTTGGCCTTCG+AGG | + | chr2_4:9974135-9974154 | Msa0314250:intron | 50.0% |
| CATTCCTCTTGAATGCACGG+TGG | + | chr2_4:9974363-9974382 | Msa0314250:intron | 50.0% | |
| TGTCGATCGGATTCTGCTAG+TGG | - | chr2_4:9975756-9975775 | None:intergenic | 50.0% | |
| !! | GGTCAAGTGCTGAAGAAACC+TGG | + | chr2_4:9975942-9975961 | Msa0314250:CDS | 50.0% |
| AGGAACAACTACCACTGGCA+TGG | - | chr2_4:9976327-9976346 | None:intergenic | 50.0% | |
| GGATCAGGAACAACTACCAC+TGG | - | chr2_4:9976332-9976351 | None:intergenic | 50.0% | |
| ! | ACATCTGGCTCAGTTGCAAC+TGG | - | chr2_4:9976353-9976372 | None:intergenic | 50.0% |
| TCAGGGACAACTGCAACAGT+TGG | - | chr2_4:9976485-9976504 | None:intergenic | 50.0% | |
| !! | GTTACGACGGGTTGTTCTTC+TGG | - | chr2_4:9976518-9976537 | None:intergenic | 50.0% |
| AGTAACCGGGGATGTTACGA+CGG | - | chr2_4:9976531-9976550 | None:intergenic | 50.0% | |
| !! | CGAGTCGAGTTGGCCAATAT+TGG | + | chr2_4:9976615-9976634 | Msa0314250:CDS | 50.0% |
| GGGAATGTCGCTCCGGTTAT+TGG | + | chr2_4:9973991-9974010 | Msa0314250:intron | 55.0% | |
| TCCTCTTGAATGCACGGTGG+CGG | + | chr2_4:9974366-9974385 | Msa0314250:intron | 55.0% | |
| TCGCAGAATGCTCATGGCCA+AGG | + | chr2_4:9975720-9975739 | Msa0314250:CDS | 55.0% | |
| CGCAGAATGCTCATGGCCAA+GGG | + | chr2_4:9975721-9975740 | Msa0314250:CDS | 55.0% | |
| GCAGAATGCTCATGGCCAAG+GGG | + | chr2_4:9975722-9975741 | Msa0314250:CDS | 55.0% | |
| CGACATGAACTCCATGCCAG+TGG | + | chr2_4:9976313-9976332 | Msa0314250:CDS | 55.0% | |
| GGCTCAGTTGCAACTGGATC+AGG | - | chr2_4:9976347-9976366 | None:intergenic | 55.0% | |
| GGCTCAGTTGCAACCGGATT+AGG | - | chr2_4:9976425-9976444 | None:intergenic | 55.0% | |
| ACAACCCGTCGTAACATCCC+CGG | + | chr2_4:9976523-9976542 | Msa0314250:CDS | 55.0% | |
| GTAACCGGGGATGTTACGAC+GGG | - | chr2_4:9976530-9976549 | None:intergenic | 55.0% | |
| ACCGCCACCGTGCATTCAAG+AGG | - | chr2_4:9974370-9974389 | None:intergenic | 60.0% | |
| CTAGTGGAGCAGCAACCCCT+TGG | - | chr2_4:9975740-9975759 | None:intergenic | 60.0% | |
| TCCGGTTGCAACTGAGCCAG+CGG | + | chr2_4:9976427-9976446 | Msa0314250:CDS | 60.0% | |
| !! | ACCGCTGGCTCAGTTGCAAC+CGG | - | chr2_4:9976431-9976450 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9973124 | 9976655 | 9973124 | ID=Msa0314250;Name=Msa0314250 |
| chr2_4 | mRNA | 9973124 | 9976655 | 9973124 | ID=Msa0314250-mRNA-1;Parent=Msa0314250;Name=Msa0314250-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|700 |
| chr2_4 | exon | 9973124 | 9973810 | 9973124 | ID=Msa0314250-mRNA-1:exon:3825;Parent=Msa0314250-mRNA-1 |
| chr2_4 | exon | 9974436 | 9974597 | 9974436 | ID=Msa0314250-mRNA-1:exon:3826;Parent=Msa0314250-mRNA-1 |
| chr2_4 | exon | 9974788 | 9974991 | 9974788 | ID=Msa0314250-mRNA-1:exon:3827;Parent=Msa0314250-mRNA-1 |
| chr2_4 | exon | 9975606 | 9976655 | 9975606 | ID=Msa0314250-mRNA-1:exon:3828;Parent=Msa0314250-mRNA-1 |
| chr2_4 | CDS | 9973124 | 9973810 | 9973124 | ID=Msa0314250-mRNA-1:cds;Parent=Msa0314250-mRNA-1 |
| chr2_4 | CDS | 9974436 | 9974597 | 9974436 | ID=Msa0314250-mRNA-1:cds;Parent=Msa0314250-mRNA-1 |
| chr2_4 | CDS | 9974788 | 9974991 | 9974788 | ID=Msa0314250-mRNA-1:cds;Parent=Msa0314250-mRNA-1 |
| chr2_4 | CDS | 9975606 | 9976655 | 9975606 | ID=Msa0314250-mRNA-1:cds;Parent=Msa0314250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
