AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032440 MtrunA17_Chr7g0254521 93.991 466 8 2 1 447 1 465 0.0 863
Msa1032440 MtrunA17_Chr7g0254511 68.387 465 124 3 2 447 3 463 0.0 653
Msa1032440 MtrunA17_Chr7g0254531 75.798 376 72 1 91 447 1 376 0.0 563
Msa1032440 MtrunA17_Chr6g0460541 66.931 378 105 2 89 447 3 379 1.36e-174 495
Msa1032440 MtrunA17_Chr5g0412541 47.964 442 210 2 25 446 29 470 3.88e-151 438
Msa1032440 MtrunA17_Chr3g0132531 45.842 469 230 3 2 446 12 480 6.13e-144 421
Msa1032440 MtrunA17_Chr7g0254501 68.385 291 72 2 176 447 2 291 1.45e-137 397
Msa1032440 MtrunA17_Chr8g0368001 42.672 464 247 1 2 446 20 483 6.10e-136 400
Msa1032440 MtrunA17_Chr1g0202761 44.240 434 222 2 33 447 44 476 8.70e-131 387
Msa1032440 MtrunA17_Chr5g0412771 45.035 433 219 1 33 446 57 489 2.52e-127 379
Msa1032440 MtrunA17_Chr4g0024501 42.366 465 238 4 13 447 35 499 1.03e-120 362
Msa1032440 MtrunA17_Chr2g0322671 41.970 467 241 3 11 447 21 487 9.63e-120 358
Msa1032440 MtrunA17_Chr5g0412571 47.230 379 178 4 89 446 38 415 3.65e-118 352
Msa1032440 MtrunA17_Chr6g0460531 63.197 269 87 3 1 268 3 260 1.42e-115 339
Msa1032440 MtrunA17_Chr7g0248051 44.009 434 223 2 33 447 71 503 6.38e-115 347
Msa1032440 MtrunA17_Chr1g0154441 46.667 375 181 1 91 446 1 375 2.52e-113 338
Msa1032440 MtrunA17_Chr6g0468531 37.991 458 260 3 13 447 8 464 8.91e-111 335
Msa1032440 MtrunA17_Chr6g0468521 37.849 465 265 5 5 447 1 463 9.09e-109 330
Msa1032440 MtrunA17_Chr3g0132541 39.588 437 224 4 13 447 22 420 2.81e-103 314
Msa1032440 MtrunA17_Chr2g0288281 42.440 377 197 2 91 447 1 377 3.96e-103 312
Msa1032440 MtrunA17_Chr5g0442331 38.983 472 263 3 1 447 10 481 2.84e-100 308
Msa1032440 MtrunA17_Chr6g0468511 37.118 458 263 4 13 447 8 463 5.64e-98 302
Msa1032440 MtrunA17_Chr6g0483361 34.868 456 268 6 15 446 11 461 7.07e-83 263
Msa1032440 MtrunA17_Chr1g0208791 32.823 457 283 3 14 446 21 477 1.36e-80 258
Msa1032440 MtrunA17_Chr6g0483381 34.402 468 269 8 3 446 10 463 6.17e-80 255
Msa1032440 MtrunA17_Chr7g0251331 34.858 459 278 3 9 446 2 460 7.26e-77 247
Msa1032440 MtrunA17_Chr6g0477961 34.573 457 270 7 15 446 11 463 8.59e-77 247
Msa1032440 MtrunA17_Chr6g0483351 36.292 383 214 5 91 447 1 379 9.06e-73 235
Msa1032440 MtrunA17_Chr6g0483161 34.444 360 235 1 89 447 1 360 1.07e-72 233
Msa1032440 MtrunA17_Chr6g0449061 32.196 469 284 5 1 446 8 465 1.42e-72 236
Msa1032440 MtrunA17_Chr8g0392601 31.938 454 274 6 18 446 3 446 9.27e-72 234
Msa1032440 MtrunA17_Chr2g0317131 32.112 464 287 4 9 445 14 476 8.88e-70 229
Msa1032440 MtrunA17_Chr6g0483331 32.280 443 273 7 28 446 8 447 9.86e-70 228
Msa1032440 MtrunA17_Chr6g0483341 29.764 467 300 6 6 446 12 476 1.28e-68 226
Msa1032440 MtrunA17_Chr1g0208821 31.568 472 293 6 2 445 5 474 2.28e-68 226
Msa1032440 MtrunA17_Chr2g0317151 33.641 434 268 2 32 445 33 466 7.82e-67 221
Msa1032440 MtrunA17_Chr2g0317161 32.680 459 281 4 14 445 7 464 1.48e-66 221
Msa1032440 MtrunA17_Chr2g0317171 32.244 459 283 4 14 445 13 470 2.63e-65 218
Msa1032440 MtrunA17_Chr1g0208881 31.250 464 292 6 5 446 1 459 1.13e-64 215
Msa1032440 MtrunA17_Chr1g0208891 31.818 462 291 4 5 446 1 458 1.71e-64 215
Msa1032440 MtrunA17_Chr6g0460521 62.500 200 56 1 267 447 1 200 3.95e-64 206
Msa1032440 MtrunA17_Chr7g0251321 33.613 357 236 1 91 446 1 357 9.23e-63 207
Msa1032440 MtrunA17_Chr2g0317221 33.509 379 230 3 88 445 7 384 4.12e-61 204
Msa1032440 MtrunA17_Chr5g0440661 34.770 348 182 4 91 437 1 304 2.86e-54 183
Msa1032440 MtrunA17_Chr5g0397991 28.025 471 306 7 1 446 37 499 2.32e-52 184
Msa1032440 MtrunA17_Chr3g0140931 27.140 479 292 9 9 447 25 486 1.19e-51 182
Msa1032440 MtrunA17_Chr1g0203791 28.200 461 302 5 9 444 40 496 3.03e-50 178
Msa1032440 MtrunA17_Chr7g0254491 67.241 116 35 1 3 118 4 116 1.13e-49 164
Msa1032440 MtrunA17_Chr6g0473701 28.281 442 285 6 29 444 125 560 3.77e-48 174
Msa1032440 MtrunA17_Chr5g0428251 25.270 463 307 6 16 447 36 490 2.05e-46 168
Msa1032440 MtrunA17_Chr8g0364761 29.703 303 198 5 15 304 27 327 3.40e-42 152
Msa1032440 MtrunA17_Chr4g0013031 25.170 441 308 3 28 446 62 502 5.93e-42 155
Msa1032440 MtrunA17_Chr6g0467321 24.174 484 322 9 2 446 8 485 1.15e-39 149
Msa1032440 MtrunA17_Chr8g0364751 49.664 149 75 0 299 447 20 168 2.25e-37 135
Msa1032440 MtrunA17_Chr8g0389801 24.161 447 293 7 30 444 21 453 4.53e-31 124
Msa1032440 MtrunA17_Chr2g0295631 23.747 459 302 5 30 446 18 470 6.39e-30 121
Msa1032440 MtrunA17_Chr6g0483221 37.162 148 93 0 300 447 8 155 8.40e-30 114
Msa1032440 MtrunA17_Chr6g0483264 33.673 196 111 1 270 446 1 196 2.57e-27 108
Msa1032440 MtrunA17_Chr6g0483241 34.783 184 113 5 89 268 1 181 3.29e-25 102
Msa1032440 MtrunA17_Chr6g0460551 58.824 85 34 1 5 88 9 93 3.59e-25 99.8
Msa1032440 MtrunA17_Chr6g0483261 36.054 147 94 0 300 446 8 154 1.26e-22 94.7
Msa1032440 MtrunA17_Chr5g0442311 33.149 181 116 3 91 268 1 179 3.72e-22 93.6
Msa1032440 MtrunA17_Chr6g0487091 23.343 347 239 4 124 446 41 384 1.73e-16 81.3
Msa1032440 MtrunA17_Chr5g0412561 41.176 85 46 1 4 88 12 92 1.86e-15 71.6
Msa1032440 MtrunA17_Chr5g0398571 27.751 209 132 2 257 446 73 281 1.96e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032440 AT1G33110.1 60.475 463 164 1 4 447 7 469 0.0 585
Msa1032440 AT1G33100.1 59.827 463 164 2 4 447 7 466 0.0 577
Msa1032440 AT1G33090.1 59.611 463 168 1 4 447 7 469 0.0 565
Msa1032440 AT1G33080.2 57.849 465 177 1 2 447 5 469 0.0 561
Msa1032440 AT1G33080.1 57.849 465 177 1 2 447 5 469 0.0 560
Msa1032440 AT1G33110.2 60.453 397 138 1 4 381 7 403 3.29e-172 489
Msa1032440 AT5G44050.1 45.011 471 233 4 2 446 3 473 1.09e-143 420
Msa1032440 AT5G65380.1 45.852 458 225 3 9 446 16 470 2.24e-140 411
Msa1032440 AT1G47530.1 44.043 470 236 3 1 446 1 467 2.48e-133 393
Msa1032440 AT5G17700.2 44.060 463 238 2 4 447 7 467 2.08e-132 391
Msa1032440 AT5G17700.1 44.060 463 238 2 4 447 7 467 2.08e-132 391
Msa1032440 AT3G26590.1 43.067 476 238 4 2 446 4 477 1.58e-131 389
Msa1032440 AT3G03620.2 43.956 455 236 1 12 447 16 470 1.58e-130 386
Msa1032440 AT3G03620.1 43.956 455 236 1 12 447 16 470 1.58e-130 386
Msa1032440 AT1G12950.1 45.497 433 217 1 33 446 67 499 4.49e-130 386
Msa1032440 AT5G10420.1 47.345 452 217 3 16 446 20 471 6.52e-130 384
Msa1032440 AT4G00350.1 44.009 434 223 2 33 447 88 520 1.70e-129 385
Msa1032440 AT1G11670.1 43.579 475 238 4 3 447 10 484 4.08e-127 378
Msa1032440 AT1G61890.1 45.011 451 224 3 21 447 31 481 1.05e-126 377
Msa1032440 AT1G61890.2 45.011 451 224 3 21 447 31 481 1.42e-126 376
Msa1032440 AT5G38030.1 43.649 433 225 1 33 446 45 477 6.94e-126 374
Msa1032440 AT1G23300.1 45.266 433 218 1 33 446 44 476 9.80e-126 375
Msa1032440 AT4G25640.1 43.991 466 238 4 4 447 2 466 1.63e-120 360
Msa1032440 AT4G25640.2 43.991 466 238 4 4 447 2 466 4.12e-120 360
Msa1032440 AT3G21690.1 44.369 444 227 2 24 447 43 486 4.21e-116 350
Msa1032440 AT1G47530.2 46.933 375 180 1 91 446 1 375 9.42e-116 345
Msa1032440 AT3G26590.2 45.600 375 185 1 91 446 1 375 1.68e-113 339
Msa1032440 AT4G21910.3 40.083 484 250 7 1 447 8 488 3.20e-113 342
Msa1032440 AT4G21910.1 40.083 484 250 7 1 447 8 488 3.20e-113 342
Msa1032440 AT4G21910.2 41.060 453 238 5 21 447 41 490 1.14e-111 338
Msa1032440 AT4G21910.4 41.060 453 238 5 21 447 41 490 1.14e-111 338
Msa1032440 AT1G61890.3 44.552 413 205 3 21 409 31 443 5.83e-111 335
Msa1032440 AT4G25640.3 43.218 435 224 4 4 416 2 435 8.10e-111 335
Msa1032440 AT5G17700.3 42.317 397 208 2 4 381 7 401 6.36e-106 320
Msa1032440 AT3G59030.1 39.636 439 242 4 30 447 49 485 1.31e-104 320
Msa1032440 AT4G21903.1 41.706 422 211 4 53 447 73 486 6.32e-104 318
Msa1032440 AT4G21903.2 41.706 422 211 4 53 447 73 486 1.01e-103 318
Msa1032440 AT4G21903.3 42.706 377 196 2 91 447 1 377 3.73e-98 300
Msa1032440 AT2G34360.1 33.693 463 267 8 15 447 3 455 3.03e-79 254
Msa1032440 AT5G52450.1 34.395 471 263 7 2 446 9 459 4.88e-77 248
Msa1032440 AT3G59030.2 36.585 369 213 3 30 378 49 416 1.49e-75 243
Msa1032440 AT2G34360.2 32.667 450 247 7 15 447 3 413 3.41e-74 239
Msa1032440 AT1G73700.1 34.615 442 261 3 29 446 20 457 2.64e-73 238
Msa1032440 AT1G15150.1 35.520 442 249 9 33 446 31 464 1.88e-71 234
Msa1032440 AT1G66760.1 32.285 477 278 9 1 447 1 462 1.38e-69 228
Msa1032440 AT1G71140.1 31.567 453 280 6 19 446 12 459 2.52e-69 228
Msa1032440 AT1G66760.2 32.143 476 278 9 1 446 1 461 5.59e-69 227
Msa1032440 AT1G66780.1 34.048 420 253 5 50 447 52 469 1.15e-68 226
Msa1032440 AT1G15160.1 33.937 442 256 9 33 446 31 464 1.73e-67 223
Msa1032440 AT1G15170.1 34.318 440 257 7 33 446 34 467 8.92e-67 221
Msa1032440 AT1G64820.1 31.713 432 265 7 40 446 36 462 4.59e-64 215
Msa1032440 AT2G04080.2 31.522 460 277 7 20 447 8 461 1.06e-63 213
Msa1032440 AT2G04080.1 31.373 459 277 7 20 446 8 460 2.07e-63 212
Msa1032440 AT3G23560.1 32.675 456 279 5 15 445 19 471 9.67e-61 205
Msa1032440 AT1G15180.1 34.318 440 257 7 33 446 35 468 4.90e-60 204
Msa1032440 AT2G04040.1 30.734 436 278 4 33 446 27 460 9.31e-60 202
Msa1032440 AT3G23550.1 31.797 434 276 2 32 445 30 463 1.42e-59 202
Msa1032440 AT2G04070.1 31.360 456 281 7 20 446 8 460 4.04e-59 201
Msa1032440 AT2G04050.1 30.238 463 277 8 20 446 8 460 1.96e-56 194
Msa1032440 AT1G15150.2 34.473 351 201 6 122 446 1 348 7.48e-56 189
Msa1032440 AT1G15170.2 34.188 351 202 6 122 446 1 348 6.19e-54 184
Msa1032440 AT2G04100.2 31.519 441 270 7 33 447 30 464 1.36e-53 186
Msa1032440 AT2G04100.1 31.364 440 270 7 33 446 30 463 7.09e-53 184
Msa1032440 AT2G04090.1 30.769 442 270 7 33 446 30 463 4.45e-51 180
Msa1032440 AT1G66760.3 33.235 340 195 6 134 447 1 334 4.93e-48 168
Msa1032440 AT1G66760.4 30.392 408 239 9 1 378 1 393 6.13e-45 161
Msa1032440 AT2G38510.1 25.393 445 301 6 29 447 2 441 8.56e-44 160
Msa1032440 AT3G23560.2 32.391 389 235 5 15 378 19 404 8.44e-43 156
Msa1032440 AT1G58340.1 25.740 439 298 4 32 446 57 491 3.27e-42 157
Msa1032440 AT5G19700.1 25.800 469 312 5 6 446 9 469 1.39e-37 144
Msa1032440 AT1G71870.1 22.642 477 327 8 10 446 1 475 8.69e-35 135
Msa1032440 AT4G29140.1 25.054 463 309 7 13 446 36 489 1.09e-34 135
Msa1032440 AT5G52050.1 24.124 485 305 7 3 444 8 472 2.68e-31 125
Msa1032440 AT4G23030.1 25.910 467 311 7 9 447 8 467 1.38e-30 124
Msa1032440 AT5G49130.1 25.673 483 310 10 1 446 3 473 1.46e-29 120
Msa1032440 AT1G15180.2 32.155 283 163 6 122 378 1 280 4.13e-29 118
Msa1032440 AT2G04066.1 39.167 120 73 0 327 446 36 155 4.36e-24 99.0
Msa1032440 AT4G22790.1 25.159 473 302 13 13 446 6 465 4.71e-22 99.0

Find 100 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGATTTCAACTATTT+TGG 0.128485 7_1:+67344838 Msa1032440:CDS
TTGACAATGAAATACGAATT+TGG 0.132006 7_1:+67344806 Msa1032440:CDS
AAGAGTTATCACTAGGAAAA+AGG 0.222046 7_1:+67343303 Msa1032440:CDS
CATCACAGCCACTCGGAAAA+TGG 0.235789 7_1:+67343220 Msa1032440:exon
AAGAGAAATGCATAAATAAA+AGG 0.238467 7_1:-67343163 None:intergenic
GAACACCATCATTGCATTCT+TGG 0.238540 7_1:+67344742 Msa1032440:CDS
ATTCCTGTTGGGGTTGTTCT+TGG 0.263732 7_1:+67346173 Msa1032440:CDS
ACAATAAAAGCAAACATAAT+TGG 0.272274 7_1:-67344680 None:intergenic
GAGGAATGCATGAATAATTA+TGG 0.285003 7_1:-67344774 None:intergenic
AAATAAAAGGGGAAAGAGTT+TGG 0.289149 7_1:-67343150 None:intergenic
TGACAATGAAATACGAATTT+GGG 0.314225 7_1:+67344807 Msa1032440:CDS
GCATATGGTGCAAAAGAATA+TGG 0.321833 7_1:+67344500 Msa1032440:CDS
AAATTGATGCATTATCTATA+TGG 0.322864 7_1:+67345351 Msa1032440:CDS
TGGCCTAAGAGAGTCAAAAT+TGG 0.339582 7_1:-67344608 None:intergenic
TTGCAGGAAACATCTCTCTT+TGG 0.351337 7_1:+67344651 Msa1032440:CDS
ATCTGGATGGGAATGTTGTT+TGG 0.361940 7_1:+67346429 Msa1032440:CDS
GCTATGGTACAACACAATAT+TGG 0.365741 7_1:+67345292 Msa1032440:CDS
TTATTCATGCATTCCTCTCT+TGG 0.371620 7_1:+67344780 Msa1032440:CDS
GGCCTAAGAGAGTCAAAATT+GGG 0.375165 7_1:-67344607 None:intergenic
ACATCATAGGTATTCCTGTT+GGG 0.378560 7_1:+67346162 Msa1032440:CDS
AGAGAAATGCATAAATAAAA+GGG 0.383048 7_1:-67343162 None:intergenic
ATAGGTTGTTATTACATCAT+AGG 0.385071 7_1:+67346149 Msa1032440:CDS
ACTGCGTTGGCGACCCTTTG+TGG 0.389048 7_1:+67344473 Msa1032440:CDS
TAATCACCTACAAAACCAAC+TGG 0.393658 7_1:+67346481 Msa1032440:CDS
GTCAAACTTTCCCTTTCAGC+TGG 0.399231 7_1:+67344968 Msa1032440:CDS
ATTTCAACAGGAGTGGCAAT+TGG 0.399246 7_1:+67346092 Msa1032440:intron
GAAAATCTTGTGAATATTGC+TGG 0.419464 7_1:-67343365 None:intergenic
AATAAAAGGGGAAAGAGTTT+GGG 0.433148 7_1:-67343149 None:intergenic
AAATATGAGTTGACCAATGT+TGG 0.433777 7_1:-67344873 None:intergenic
CTTCTGATATGCTTTCATCT+TGG 0.434393 7_1:-67344628 None:intergenic
TTTGTGATTGAAGGAATGTT+TGG 0.439478 7_1:-67344715 None:intergenic
ACAGGAGTGGCAATTGGAGC+AGG 0.444328 7_1:+67346098 Msa1032440:intron
CAACATTGCACCAGCTGAAA+GGG 0.447324 7_1:-67344978 None:intergenic
GAAGAAGAACAAGTGCAGTT+AGG 0.451597 7_1:-67344565 None:intergenic
ACCCTTTGTGGACAAGCATA+TGG 0.455701 7_1:+67344485 Msa1032440:CDS
CACAACGATCGAGAACTTTG+CGG 0.457054 7_1:-67345704 None:intergenic
TGTTCTTGCTTTGTGATTGA+AGG 0.457141 7_1:-67344724 None:intergenic
GAGAAACCTTGCCAAGTCTC+AGG 0.471152 7_1:-67344914 None:intergenic
TGCGGCCACCTCTTTATTCG+AGG 0.471701 7_1:-67345809 None:intergenic
GGTCACAAACGTGATGTGTT+TGG 0.471763 7_1:-67343128 None:intergenic
TTACCAAGAACAACCCCAAC+AGG 0.474968 7_1:-67346176 None:intergenic
ATGAAAATTGTAGTTGGGAA+TGG 0.482830 7_1:+67344448 Msa1032440:intron
AAATACGAATTTGGGATTGC+TGG 0.485502 7_1:+67344815 Msa1032440:CDS
GGAATGAAACAAAGCTTATG+TGG 0.489956 7_1:+67343330 Msa1032440:CDS
GAGTATATCTTCAAAGATCA+TGG 0.493939 7_1:+67344531 Msa1032440:CDS
TGCAAAAGAATATGGAATGA+TGG 0.495159 7_1:+67344508 Msa1032440:CDS
GAAAGGGAAAGTTTGACAAC+AGG 0.496284 7_1:-67344962 None:intergenic
TTCTTGGTAATGTTATCCAT+TGG 0.504552 7_1:+67346189 Msa1032440:CDS
TATTATGCAGTCTTGAGCTA+TGG 0.507079 7_1:+67345276 Msa1032440:intron
AATATGAGTTGACCAATGTT+GGG 0.515656 7_1:-67344872 None:intergenic
TGTGACAGTGCTTACGTCGT+TGG 0.516527 7_1:+67345723 Msa1032440:CDS
CATCATAGGTATTCCTGTTG+GGG 0.518377 7_1:+67346163 Msa1032440:CDS
TACATCATAGGTATTCCTGT+TGG 0.519474 7_1:+67346161 Msa1032440:CDS
GTATCAAATGAGCTTGGTAA+AGG 0.521672 7_1:+67345670 Msa1032440:CDS
CAAAACCAACTGGGATGAGC+AGG 0.522487 7_1:+67346491 Msa1032440:CDS
ACCATATGCTTGTCCACAAA+GGG 0.523264 7_1:-67344486 None:intergenic
TTTCGATAGGGTATCTGGAT+GGG 0.528960 7_1:+67346417 Msa1032440:intron
TTTCAGCTGGTGCAATGTTG+TGG 0.537720 7_1:+67344981 Msa1032440:CDS
CACCATATGCTTGTCCACAA+AGG 0.545263 7_1:-67344487 None:intergenic
GAAAGCATATCAGAAGTTGC+AGG 0.546308 7_1:+67344635 Msa1032440:CDS
TCATATTTGTTACATGTGGT+TGG 0.546428 7_1:+67344888 Msa1032440:CDS
TGGTGTCCTGAGACTTGGCA+AGG 0.562901 7_1:+67344908 Msa1032440:CDS
TCATACCTGCTCATCCCAGT+TGG 0.566874 7_1:-67346496 None:intergenic
GTTGGGAATGGCGACTGCGT+TGG 0.570219 7_1:+67344460 Msa1032440:intron
TAGTTAGTACCTGAGAGTAC+TGG 0.570568 7_1:-67345889 None:intergenic
GTGGTTGGTGTCCTGAGACT+TGG 0.570911 7_1:+67344903 Msa1032440:CDS
AGCTGCCAAGAATGCAATGA+TGG 0.574760 7_1:-67344747 None:intergenic
ACAACATTGCACCAGCTGAA+AGG 0.577683 7_1:-67344979 None:intergenic
AGCCTACCTTGACTTGCCAA+TGG 0.579025 7_1:-67346205 None:intergenic
AGTGTTCAACCAGTACTCTC+AGG 0.579086 7_1:+67345880 Msa1032440:CDS
GCATATTGGATTCCCAACAT+TGG 0.580747 7_1:+67344860 Msa1032440:CDS
GTGGCTGTGATGGTTAGTTA+TGG 0.582814 7_1:-67343209 None:intergenic
GAGAAATGCATAAATAAAAG+GGG 0.583294 7_1:-67343161 None:intergenic
ATGCATGAAGACCACGCCAC+TGG 0.584247 7_1:+67343096 Msa1032440:five_prime_UTR
AAAGAGGTGGCCGCAGCTGT+CGG 0.584660 7_1:+67345817 Msa1032440:CDS
GTGCTTACGTCGTTGGCCAT+CGG 0.585684 7_1:+67345730 Msa1032440:CDS
CAACTCATATTTGTTACATG+TGG 0.589602 7_1:+67344884 Msa1032440:CDS
GCAAAAGAATATGGAATGAT+GGG 0.591328 7_1:+67344509 Msa1032440:CDS
GTTCGAGTATCAAATGAGCT+TGG 0.593317 7_1:+67345664 Msa1032440:CDS
AACTAACCATCACAGCCACT+CGG 0.597158 7_1:+67343213 Msa1032440:five_prime_UTR
GTTCTCATTAGGTTCGCCAA+TGG 0.599406 7_1:+67343473 Msa1032440:CDS
ACTTTACTACATGTCAGATG+TGG 0.599530 7_1:-67343032 None:intergenic
ACAGTAGCATATGTGAACAT+AGG 0.603815 7_1:+67346131 Msa1032440:CDS
TGTTATCCATTGGCAAGTCA+AGG 0.605886 7_1:+67346199 Msa1032440:CDS
GGCATACTCGACCAGTGGCG+TGG 0.614671 7_1:-67343107 None:intergenic
CAGGAGTGGCAATTGGAGCA+GGG 0.627575 7_1:+67346099 Msa1032440:intron
GAACAAGAAGAGTTATCACT+AGG 0.631617 7_1:+67343296 Msa1032440:CDS
AGTACTCACGAGAATACCAT+TGG 0.633680 7_1:-67343489 None:intergenic
GAATGAAACAAAGCTTATGT+GGG 0.634561 7_1:+67343331 Msa1032440:CDS
TGATAATTCTCCGACAGCTG+CGG 0.638170 7_1:-67345827 None:intergenic
TCATTGTCAAAAGCCAAGAG+AGG 0.649754 7_1:-67344793 None:intergenic
TTATTAAGATATTGTTAACG+AGG 0.661940 7_1:-67346530 None:intergenic
TTTCACCTCGAATAAAGAGG+TGG 0.663498 7_1:+67345804 Msa1032440:CDS
GGGGTTGTGAAGACAAACAC+AGG 0.666387 7_1:-67344587 None:intergenic
TGTTTGGCATACTCGACCAG+TGG 0.667259 7_1:-67343112 None:intergenic
AGTATAGAGATCGATAACAA+AGG 0.668530 7_1:-67345850 None:intergenic
GCCTAAGAGAGTCAAAATTG+GGG 0.673808 7_1:-67344606 None:intergenic
AATCACCTACAAAACCAACT+GGG 0.676987 7_1:+67346482 Msa1032440:CDS
TGAAACAAAGCTTATGTGGG+TGG 0.707571 7_1:+67343334 Msa1032440:CDS
GAGTGGCAATTGGAGCAGGG+TGG 0.718007 7_1:+67346102 Msa1032440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTTTGTTTAATTAATA+AGG - chr7_1:67346399-67346418 None:intergenic 10.0%
!! AAAAAATATGTTATCCATAA+AGG - chr7_1:67345210-67345229 None:intergenic 15.0%
!!! AAGTAAATGTAAATTTTCAA+TGG - chr7_1:67345634-67345653 None:intergenic 15.0%
!! AGAGAAATGCATAAATAAAA+GGG - chr7_1:67343165-67343184 None:intergenic 20.0%
!! AAGAGAAATGCATAAATAAA+AGG - chr7_1:67343166-67343185 None:intergenic 20.0%
!! TTTAATGCAATCATATCTAT+CGG + chr7_1:67343722-67343741 Msa1032440:intron 20.0%
!!! CTCAAAACTTGTTAATTTTA+AGG + chr7_1:67343805-67343824 Msa1032440:intron 20.0%
!!! AAACTTGTTAATTTTAAGGA+AGG + chr7_1:67343809-67343828 Msa1032440:intron 20.0%
!! AATACCAAAACATCATATAA+GGG - chr7_1:67343917-67343936 None:intergenic 20.0%
!! TAATACCAAAACATCATATA+AGG - chr7_1:67343918-67343937 None:intergenic 20.0%
!! CATTTCAATGATTATGATTA+TGG + chr7_1:67343997-67344016 Msa1032440:intron 20.0%
!! GTATAACTGTATATTAGTAA+AGG + chr7_1:67344021-67344040 Msa1032440:intron 20.0%
!!! TTAAAATGTTGTCACTTTAT+TGG + chr7_1:67344076-67344095 Msa1032440:intron 20.0%
!!! TTTTTAAAAGAACTATGAAC+AGG + chr7_1:67344236-67344255 Msa1032440:intron 20.0%
!! TGTAAAATGAAAATTGTAGT+TGG + chr7_1:67344442-67344461 Msa1032440:intron 20.0%
!! GTAAAATGAAAATTGTAGTT+GGG + chr7_1:67344443-67344462 Msa1032440:intron 20.0%
!! ACAATAAAAGCAAACATAAT+TGG - chr7_1:67344683-67344702 None:intergenic 20.0%
!! AAATTGATGCATTATCTATA+TGG + chr7_1:67345351-67345370 Msa1032440:CDS 20.0%
!! TAATTTCATTTCATTTCAAC+AGG + chr7_1:67346080-67346099 Msa1032440:intron 20.0%
!! CATATATATAACTTATGCAA+AGG - chr7_1:67346369-67346388 None:intergenic 20.0%
!!! ATTAAACAAACATTTTCGAT+AGG + chr7_1:67346404-67346423 Msa1032440:intron 20.0%
!!! TTAAACAAACATTTTCGATA+GGG + chr7_1:67346405-67346424 Msa1032440:intron 20.0%
!! TTATTAAGATATTGTTAACG+AGG - chr7_1:67346533-67346552 None:intergenic 20.0%
! GAGAAATGCATAAATAAAAG+GGG - chr7_1:67343164-67343183 None:intergenic 25.0%
!! TTCACAAGATTTTCAACTTT+TGG + chr7_1:67343374-67343393 Msa1032440:CDS 25.0%
!! ATTATTAGTCAAGCTTTTGT+TGG + chr7_1:67343404-67343423 Msa1032440:CDS 25.0%
!!! TTGATAAATTTTGAGAGACA+AGG - chr7_1:67343627-67343646 None:intergenic 25.0%
! ATACCAAAACATCATATAAG+GGG - chr7_1:67343916-67343935 None:intergenic 25.0%
! CCTTCAACAAAAATATACAA+AGG - chr7_1:67344116-67344135 None:intergenic 25.0%
!!! CCTTTGTATATTTTTGTTGA+AGG + chr7_1:67344113-67344132 Msa1032440:intron 25.0%
! TTGACAATGAAATACGAATT+TGG + chr7_1:67344806-67344825 Msa1032440:CDS 25.0%
! TGACAATGAAATACGAATTT+GGG + chr7_1:67344807-67344826 Msa1032440:CDS 25.0%
!! TGCAATGATTTCAACTATTT+TGG + chr7_1:67344838-67344857 Msa1032440:CDS 25.0%
!!! TTTCAACTATTTTGGCATAT+TGG + chr7_1:67344846-67344865 Msa1032440:CDS 25.0%
!! TTTTAGCATTCAAAGATCTT+TGG + chr7_1:67344939-67344958 Msa1032440:CDS 25.0%
! TTTGATGCATGTTTGAATTA+AGG + chr7_1:67345050-67345069 Msa1032440:intron 25.0%
!! TGTAGATTTTGTCAAAATCA+CGG + chr7_1:67345111-67345130 Msa1032440:intron 25.0%
! GTAAGCATATAAGATGAAAA+AGG - chr7_1:67345608-67345627 None:intergenic 25.0%
! TAAGAAGAACAAAAACAGAA+AGG - chr7_1:67345758-67345777 None:intergenic 25.0%
!! TGTGAATTAGTTTGATGAAT+TGG + chr7_1:67345933-67345952 Msa1032440:intron 25.0%
!! ATAGGTTGTTATTACATCAT+AGG + chr7_1:67346149-67346168 Msa1032440:CDS 25.0%
AATAAAAGGGGAAAGAGTTT+GGG - chr7_1:67343152-67343171 None:intergenic 30.0%
AAATAAAAGGGGAAAGAGTT+TGG - chr7_1:67343153-67343172 None:intergenic 30.0%
AAGAGTTATCACTAGGAAAA+AGG + chr7_1:67343303-67343322 Msa1032440:CDS 30.0%
AGAGTTATCACTAGGAAAAA+GGG + chr7_1:67343304-67343323 Msa1032440:CDS 30.0%
GAATGAAACAAAGCTTATGT+GGG + chr7_1:67343331-67343350 Msa1032440:CDS 30.0%
GAAAATCTTGTGAATATTGC+TGG - chr7_1:67343368-67343387 None:intergenic 30.0%
! TTGTTTTCACTGTTCTCATT+AGG + chr7_1:67343462-67343481 Msa1032440:CDS 30.0%
!!! GGTGTTCTGTTTTTTCTTTT+TGG + chr7_1:67343830-67343849 Msa1032440:intron 30.0%
!!! ATGATGTTTTGGTATTAGAG+TGG + chr7_1:67343921-67343940 Msa1032440:intron 30.0%
! GATTCTAGAGATTAGTTGAA+TGG + chr7_1:67343945-67343964 Msa1032440:intron 30.0%
! TATCCGTCATTTAACAGTTT+TGG + chr7_1:67344264-67344283 Msa1032440:intron 30.0%
! ATCCGTCATTTAACAGTTTT+GGG + chr7_1:67344265-67344284 Msa1032440:intron 30.0%
ATGAAAATTGTAGTTGGGAA+TGG + chr7_1:67344448-67344467 Msa1032440:intron 30.0%
TGCAAAAGAATATGGAATGA+TGG + chr7_1:67344508-67344527 Msa1032440:CDS 30.0%
GCAAAAGAATATGGAATGAT+GGG + chr7_1:67344509-67344528 Msa1032440:CDS 30.0%
GAGTATATCTTCAAAGATCA+TGG + chr7_1:67344531-67344550 Msa1032440:CDS 30.0%
TTTGTGATTGAAGGAATGTT+TGG - chr7_1:67344718-67344737 None:intergenic 30.0%
GAGGAATGCATGAATAATTA+TGG - chr7_1:67344777-67344796 None:intergenic 30.0%
! AATATGAGTTGACCAATGTT+GGG - chr7_1:67344875-67344894 None:intergenic 30.0%
! AAATATGAGTTGACCAATGT+TGG - chr7_1:67344876-67344895 None:intergenic 30.0%
! CAACTCATATTTGTTACATG+TGG + chr7_1:67344884-67344903 Msa1032440:CDS 30.0%
! TCATATTTGTTACATGTGGT+TGG + chr7_1:67344888-67344907 Msa1032440:CDS 30.0%
TTTGAATTAAGGATTCACAG+TGG + chr7_1:67345061-67345080 Msa1032440:intron 30.0%
GCTTACTATTATGTCCTTTA+TGG + chr7_1:67345193-67345212 Msa1032440:intron 30.0%
!!! ACAATATTGGTTCTTTTGAC+AGG + chr7_1:67345305-67345324 Msa1032440:CDS 30.0%
!!! CAATATTGGTTCTTTTGACA+GGG + chr7_1:67345306-67345325 Msa1032440:CDS 30.0%
TATAAAAGGCTTCTTTCACT+TGG + chr7_1:67345460-67345479 Msa1032440:intron 30.0%
ATTAACAGTCTCAACATCAA+TGG + chr7_1:67345506-67345525 Msa1032440:intron 30.0%
ATAAGATGAAAAAGGATGGA+TGG - chr7_1:67345600-67345619 None:intergenic 30.0%
GCATATAAGATGAAAAAGGA+TGG - chr7_1:67345604-67345623 None:intergenic 30.0%
! TATTTTCACCTCGAATAAAG+AGG + chr7_1:67345801-67345820 Msa1032440:CDS 30.0%
AGTATAGAGATCGATAACAA+AGG - chr7_1:67345853-67345872 None:intergenic 30.0%
CATCAAACTAATTCACATAG+TGG - chr7_1:67345930-67345949 None:intergenic 30.0%
!! TTCTTGGTAATGTTATCCAT+TGG + chr7_1:67346189-67346208 Msa1032440:CDS 30.0%
! GCAATTTGAAATCAAGAAGA+GGG - chr7_1:67346239-67346258 None:intergenic 30.0%
! TGCAATTTGAAATCAAGAAG+AGG - chr7_1:67346240-67346259 None:intergenic 30.0%
!! GAATTTTTCAGTTTCGTGTA+TGG - chr7_1:67346282-67346301 None:intergenic 30.0%
ACTTTACTACATGTCAGATG+TGG - chr7_1:67343035-67343054 None:intergenic 35.0%
GAACAAGAAGAGTTATCACT+AGG + chr7_1:67343296-67343315 Msa1032440:CDS 35.0%
TATCACTAGGAAAAAGGGTT+TGG + chr7_1:67343309-67343328 Msa1032440:CDS 35.0%
GGAATGAAACAAAGCTTATG+TGG + chr7_1:67343330-67343349 Msa1032440:CDS 35.0%
! CAAGCTTTTGTTGGTCATAT+TGG + chr7_1:67343413-67343432 Msa1032440:CDS 35.0%
! CAAGGAGAAACATAGTTTTC+AGG - chr7_1:67343609-67343628 None:intergenic 35.0%
AATGAATCACATAGACTCCT+TGG - chr7_1:67343784-67343803 None:intergenic 35.0%
! TCACCCCTTATATGATGTTT+TGG + chr7_1:67343910-67343929 Msa1032440:intron 35.0%
!! TGGAGTTTTGATGACTTTGT+AGG + chr7_1:67343965-67343984 Msa1032440:intron 35.0%
CTCCCAAAACTGTTAAATGA+CGG - chr7_1:67344270-67344289 None:intergenic 35.0%
ATTCATAGCAATGTTGTGTC+TGG + chr7_1:67344371-67344390 Msa1032440:intron 35.0%
GCATATGGTGCAAAAGAATA+TGG + chr7_1:67344500-67344519 Msa1032440:CDS 35.0%
CTTCTGATATGCTTTCATCT+TGG - chr7_1:67344631-67344650 None:intergenic 35.0%
TGTTCTTGCTTTGTGATTGA+AGG - chr7_1:67344727-67344746 None:intergenic 35.0%
TTATTCATGCATTCCTCTCT+TGG + chr7_1:67344780-67344799 Msa1032440:CDS 35.0%
! AAATACGAATTTGGGATTGC+TGG + chr7_1:67344815-67344834 Msa1032440:CDS 35.0%
! CAGATTCATTCAAGTTAGCA+AGG - chr7_1:67345252-67345271 None:intergenic 35.0%
TATTATGCAGTCTTGAGCTA+TGG + chr7_1:67345276-67345295 Msa1032440:intron 35.0%
GCTATGGTACAACACAATAT+TGG + chr7_1:67345292-67345311 Msa1032440:CDS 35.0%
CTTGCCTTGTGATGTATAAA+AGG + chr7_1:67345446-67345465 Msa1032440:intron 35.0%
! GAAGCCTTTTATACATCACA+AGG - chr7_1:67345453-67345472 None:intergenic 35.0%
TGGGAAATGATGATATCACT+TGG + chr7_1:67345530-67345549 Msa1032440:intron 35.0%
GATGATATCACTTGGTTTCA+TGG + chr7_1:67345538-67345557 Msa1032440:intron 35.0%
TGAAAAAGGATGGATGGAAA+GGG - chr7_1:67345594-67345613 None:intergenic 35.0%
ATGAAAAAGGATGGATGGAA+AGG - chr7_1:67345595-67345614 None:intergenic 35.0%
GTATCAAATGAGCTTGGTAA+AGG + chr7_1:67345670-67345689 Msa1032440:CDS 35.0%
TCATTTCATTTCAACAGGAG+TGG + chr7_1:67346085-67346104 Msa1032440:intron 35.0%
ACAGTAGCATATGTGAACAT+AGG + chr7_1:67346131-67346150 Msa1032440:CDS 35.0%
TACATCATAGGTATTCCTGT+TGG + chr7_1:67346161-67346180 Msa1032440:CDS 35.0%
ACATCATAGGTATTCCTGTT+GGG + chr7_1:67346162-67346181 Msa1032440:CDS 35.0%
!! AACATTTTCGATAGGGTATC+TGG + chr7_1:67346412-67346431 Msa1032440:intron 35.0%
TAATCACCTACAAAACCAAC+TGG + chr7_1:67346481-67346500 Msa1032440:CDS 35.0%
AATCACCTACAAAACCAACT+GGG + chr7_1:67346482-67346501 Msa1032440:CDS 35.0%
! ATCTCTTTCCATTTTCCGAG+TGG - chr7_1:67343231-67343250 None:intergenic 40.0%
TGAAACAAAGCTTATGTGGG+TGG + chr7_1:67343334-67343353 Msa1032440:CDS 40.0%
AGTACTCACGAGAATACCAT+TGG - chr7_1:67343492-67343511 None:intergenic 40.0%
ATTGAGACACACCAAATCCA+AGG + chr7_1:67343764-67343783 Msa1032440:intron 40.0%
TCACATAGACTCCTTGGATT+TGG - chr7_1:67343778-67343797 None:intergenic 40.0%
!! AGTGCTGCATAGAGTTTTAG+AGG - chr7_1:67344308-67344327 None:intergenic 40.0%
ACACATATTGAAGACGTGTG+TGG + chr7_1:67344329-67344348 Msa1032440:intron 40.0%
ACCATATGCTTGTCCACAAA+GGG - chr7_1:67344489-67344508 None:intergenic 40.0%
GAAGAAGAACAAGTGCAGTT+AGG - chr7_1:67344568-67344587 None:intergenic 40.0%
!!! ACCCCAATTTTGACTCTCTT+AGG + chr7_1:67344605-67344624 Msa1032440:CDS 40.0%
GCCTAAGAGAGTCAAAATTG+GGG - chr7_1:67344609-67344628 None:intergenic 40.0%
GGCCTAAGAGAGTCAAAATT+GGG - chr7_1:67344610-67344629 None:intergenic 40.0%
TGGCCTAAGAGAGTCAAAAT+TGG - chr7_1:67344611-67344630 None:intergenic 40.0%
! GAAAGCATATCAGAAGTTGC+AGG + chr7_1:67344635-67344654 Msa1032440:CDS 40.0%
TTGCAGGAAACATCTCTCTT+TGG + chr7_1:67344651-67344670 Msa1032440:CDS 40.0%
GAACACCATCATTGCATTCT+TGG + chr7_1:67344742-67344761 Msa1032440:CDS 40.0%
TCATTGTCAAAAGCCAAGAG+AGG - chr7_1:67344796-67344815 None:intergenic 40.0%
GCATATTGGATTCCCAACAT+TGG + chr7_1:67344860-67344879 Msa1032440:CDS 40.0%
GAAAGGGAAAGTTTGACAAC+AGG - chr7_1:67344965-67344984 None:intergenic 40.0%
GAGTGCATCTGTTACATTGA+TGG - chr7_1:67345164-67345183 None:intergenic 40.0%
AGGGAACATGAAAAATGCAG+AGG + chr7_1:67345325-67345344 Msa1032440:CDS 40.0%
ACAGTCTCAACATCAATGGA+TGG + chr7_1:67345510-67345529 Msa1032440:intron 40.0%
CAGTCTCAACATCAATGGAT+GGG + chr7_1:67345511-67345530 Msa1032440:intron 40.0%
GAAAAAGGATGGATGGAAAG+GGG - chr7_1:67345593-67345612 None:intergenic 40.0%
GTTCGAGTATCAAATGAGCT+TGG + chr7_1:67345664-67345683 Msa1032440:CDS 40.0%
CAAAAACAGAAAGGATCCGA+TGG - chr7_1:67345749-67345768 None:intergenic 40.0%
TTTCACCTCGAATAAAGAGG+TGG + chr7_1:67345804-67345823 Msa1032440:CDS 40.0%
! TAGTTAGTACCTGAGAGTAC+TGG - chr7_1:67345892-67345911 None:intergenic 40.0%
ATTTCAACAGGAGTGGCAAT+TGG + chr7_1:67346092-67346111 Msa1032440:intron 40.0%
CATCATAGGTATTCCTGTTG+GGG + chr7_1:67346163-67346182 Msa1032440:CDS 40.0%
TGTTATCCATTGGCAAGTCA+AGG + chr7_1:67346199-67346218 Msa1032440:CDS 40.0%
!! TTTTCGATAGGGTATCTGGA+TGG + chr7_1:67346416-67346435 Msa1032440:intron 40.0%
! TTTCGATAGGGTATCTGGAT+GGG + chr7_1:67346417-67346436 Msa1032440:intron 40.0%
ATCTGGATGGGAATGTTGTT+TGG + chr7_1:67346429-67346448 Msa1032440:CDS 40.0%
GGTCACAAACGTGATGTGTT+TGG - chr7_1:67343131-67343150 None:intergenic 45.0%
! GTGGCTGTGATGGTTAGTTA+TGG - chr7_1:67343212-67343231 None:intergenic 45.0%
AACTAACCATCACAGCCACT+CGG + chr7_1:67343213-67343232 Msa1032440:five_prime_UTR 45.0%
GTTCTCATTAGGTTCGCCAA+TGG + chr7_1:67343473-67343492 Msa1032440:CDS 45.0%
CAAGACAAGCAAGTTCAACG+TGG - chr7_1:67343576-67343595 None:intergenic 45.0%
GTAGGTATCTGTGACGTGTT+TGG - chr7_1:67343665-67343684 None:intergenic 45.0%
!! TATCATCAGTGTCGACGTGT+AGG - chr7_1:67343683-67343702 None:intergenic 45.0%
ACCCTTTGTGGACAAGCATA+TGG + chr7_1:67344485-67344504 Msa1032440:CDS 45.0%
CACCATATGCTTGTCCACAA+AGG - chr7_1:67344490-67344509 None:intergenic 45.0%
AGCTGCCAAGAATGCAATGA+TGG - chr7_1:67344750-67344769 None:intergenic 45.0%
GTCAAACTTTCCCTTTCAGC+TGG + chr7_1:67344968-67344987 Msa1032440:CDS 45.0%
CAACATTGCACCAGCTGAAA+GGG - chr7_1:67344981-67345000 None:intergenic 45.0%
ACAACATTGCACCAGCTGAA+AGG - chr7_1:67344982-67345001 None:intergenic 45.0%
TTTCAGCTGGTGCAATGTTG+TGG + chr7_1:67344981-67345000 Msa1032440:CDS 45.0%
CACAACGATCGAGAACTTTG+CGG - chr7_1:67345707-67345726 None:intergenic 45.0%
TGATAATTCTCCGACAGCTG+CGG - chr7_1:67345830-67345849 None:intergenic 45.0%
AGTGTTCAACCAGTACTCTC+AGG + chr7_1:67345880-67345899 Msa1032440:CDS 45.0%
ATTCCTGTTGGGGTTGTTCT+TGG + chr7_1:67346173-67346192 Msa1032440:CDS 45.0%
TTACCAAGAACAACCCCAAC+AGG - chr7_1:67346179-67346198 None:intergenic 45.0%
ATCCATTGGCAAGTCAAGGT+AGG + chr7_1:67346203-67346222 Msa1032440:intron 45.0%
!! TGCAAAGGCACTTCAGTTGA+AGG - chr7_1:67346354-67346373 None:intergenic 45.0%
!!! CTCATCCCAGTTGGTTTTGT+AGG - chr7_1:67346490-67346509 None:intergenic 45.0%
!! TTATTATATTATTAAAAAGA+AGG - chr7_1:67343550-67343569 None:intergenic 5.0%
TGTTTGGCATACTCGACCAG+TGG - chr7_1:67343115-67343134 None:intergenic 50.0%
! CATTTTCCGAGTGGCTGTGA+TGG - chr7_1:67343222-67343241 None:intergenic 50.0%
CATCACAGCCACTCGGAAAA+TGG + chr7_1:67343220-67343239 Msa1032440:exon 50.0%
GGGGTTGTGAAGACAAACAC+AGG - chr7_1:67344590-67344609 None:intergenic 50.0%
GAGAAACCTTGCCAAGTCTC+AGG - chr7_1:67344917-67344936 None:intergenic 50.0%
TTGGTTTCATGGCTGCAGCA+AGG + chr7_1:67345549-67345568 Msa1032440:intron 50.0%
AGGATGGATGGAAAGGGGAT+CGG - chr7_1:67345588-67345607 None:intergenic 50.0%
TGTGACAGTGCTTACGTCGT+TGG + chr7_1:67345723-67345742 Msa1032440:CDS 50.0%
!! AGCCTACCTTGACTTGCCAA+TGG - chr7_1:67346208-67346227 None:intergenic 50.0%
CAAAACCAACTGGGATGAGC+AGG + chr7_1:67346491-67346510 Msa1032440:CDS 50.0%
TCATACCTGCTCATCCCAGT+TGG - chr7_1:67346499-67346518 None:intergenic 50.0%
ATGCATGAAGACCACGCCAC+TGG + chr7_1:67343096-67343115 Msa1032440:five_prime_UTR 55.0%
! GTGGTTGGTGTCCTGAGACT+TGG + chr7_1:67344903-67344922 Msa1032440:CDS 55.0%
TGGTGTCCTGAGACTTGGCA+AGG + chr7_1:67344908-67344927 Msa1032440:CDS 55.0%
GTGCTTACGTCGTTGGCCAT+CGG + chr7_1:67345730-67345749 Msa1032440:CDS 55.0%
TGCGGCCACCTCTTTATTCG+AGG - chr7_1:67345812-67345831 None:intergenic 55.0%
ACAGGAGTGGCAATTGGAGC+AGG + chr7_1:67346098-67346117 Msa1032440:intron 55.0%
CAGGAGTGGCAATTGGAGCA+GGG + chr7_1:67346099-67346118 Msa1032440:intron 55.0%
GTTGGGAATGGCGACTGCGT+TGG + chr7_1:67344460-67344479 Msa1032440:intron 60.0%
! ACTGCGTTGGCGACCCTTTG+TGG + chr7_1:67344473-67344492 Msa1032440:CDS 60.0%
AAAGAGGTGGCCGCAGCTGT+CGG + chr7_1:67345817-67345836 Msa1032440:CDS 60.0%
GAGTGGCAATTGGAGCAGGG+TGG + chr7_1:67346102-67346121 Msa1032440:CDS 60.0%
GGCATACTCGACCAGTGGCG+TGG - chr7_1:67343110-67343129 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67343026 67346552 67343026 ID=Msa1032440;Name=Msa1032440
chr7_1 mRNA 67343026 67346552 67343026 ID=Msa1032440-mRNA-1;Parent=Msa1032440;Name=Msa1032440-mRNA-1;_AED=0.36;_eAED=0.36;_QI=213|0.8|1|1|1|1|6|34|447
chr7_1 exon 67343026 67343502 67343026 ID=Msa1032440-mRNA-1:exon:15463;Parent=Msa1032440-mRNA-1
chr7_1 exon 67344461 67345002 67344461 ID=Msa1032440-mRNA-1:exon:15464;Parent=Msa1032440-mRNA-1
chr7_1 exon 67345286 67345372 67345286 ID=Msa1032440-mRNA-1:exon:15465;Parent=Msa1032440-mRNA-1
chr7_1 exon 67345663 67345901 67345663 ID=Msa1032440-mRNA-1:exon:15466;Parent=Msa1032440-mRNA-1
chr7_1 exon 67346102 67346220 67346102 ID=Msa1032440-mRNA-1:exon:15467;Parent=Msa1032440-mRNA-1
chr7_1 exon 67346426 67346552 67346426 ID=Msa1032440-mRNA-1:exon:15468;Parent=Msa1032440-mRNA-1
chr7_1 five_prime_UTR 67343026 67343238 67343026 ID=Msa1032440-mRNA-1:five_prime_utr;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67343239 67343502 67343239 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67344461 67345002 67344461 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67345286 67345372 67345286 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67345663 67345901 67345663 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67346102 67346220 67346102 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 CDS 67346426 67346518 67346426 ID=Msa1032440-mRNA-1:cds;Parent=Msa1032440-mRNA-1
chr7_1 three_prime_UTR 67346519 67346552 67346519 ID=Msa1032440-mRNA-1:three_prime_utr;Parent=Msa1032440-mRNA-1
Gene Sequence

>Msa1032440

ATGGAAAGAGATCTAAAACAGAATCTACTACAGAAAAAATCAGAAGAAGAAGAAAATGAACAAGAAGAGTTATCACTAGGAAAAAGGGTTTGGAATGAAACAAAGCTTATGTGGGTGGTTGCAGCACCAGCAATATTCACAAGATTTTCAACTTTTGGTATTCAAATTATTAGTCAAGCTTTTGTTGGTCATATTGGTTCAAGAGAACTCGCTGCTTTTGCTCTTGTTTTCACTGTTCTCATTAGGTTCGCCAATGGTATTCTCTTGGGAATGGCGACTGCGTTGGCGACCCTTTGTGGACAAGCATATGGTGCAAAAGAATATGGAATGATGGGAGTATATCTTCAAAGATCATGGATAGTTTTATTCCTAACTGCACTTGTTCTTCTTCCTGTGTTTGTCTTCACAACCCCAATTTTGACTCTCTTAGGCCAAGATGAAAGCATATCAGAAGTTGCAGGAAACATCTCTCTTTGGTCAATTCCAATTATGTTTGCTTTTATTGTCTCATTCACTTGCCAAACATTCCTTCAATCACAAAGCAAGAACACCATCATTGCATTCTTGGCAGCTTTTTCCATAATTATTCATGCATTCCTCTCTTGGCTTTTGACAATGAAATACGAATTTGGGATTGCTGGTGCAATGATTTCAACTATTTTGGCATATTGGATTCCCAACATTGGTCAACTCATATTTGTTACATGTGGTTGGTGTCCTGAGACTTGGCAAGGTTTCTCATTTTTAGCATTCAAAGATCTTTGGCCTGTTGTCAAACTTTCCCTTTCAGCTGGTGCAATGTTGTGTCTTGAGCTATGGTACAACACAATATTGGTTCTTTTGACAGGGAACATGAAAAATGCAGAGGTTGAAATTGATGCATTATCTATATGTGTTCGAGTATCAAATGAGCTTGGTAAAGGAAGCGCGAAAGCCGCAAAGTTCTCGATCGTTGTGACAGTGCTTACGTCGTTGGCCATCGGATCCTTTCTGTTTTTGTTCTTCTTATTTTTTAGAGAAAGACTTGCTTATATTTTCACCTCGAATAAAGAGGTGGCCGCAGCTGTCGGAGAATTATCACCTTTGTTATCGATCTCTATACTATTAAACAGTGTTCAACCAGTACTCTCAGGAGTGGCAATTGGAGCAGGGTGGCAAAGCACAGTAGCATATGTGAACATAGGTTGTTATTACATCATAGGTATTCCTGTTGGGGTTGTTCTTGGTAATGTTATCCATTGGCAAGTCAAGGGTATCTGGATGGGAATGTTGTTTGGAACATTGATTCAAACTATAGTTCTACTTATAATCACCTACAAAACCAACTGGGATGAGCAGGTATGA

Protein sequence

>Msa1032440

MERDLKQNLLQKKSEEEENEQEELSLGKRVWNETKLMWVVAAPAIFTRFSTFGIQIISQAFVGHIGSRELAAFALVFTVLIRFANGILLGMATALATLCGQAYGAKEYGMMGVYLQRSWIVLFLTALVLLPVFVFTTPILTLLGQDESISEVAGNISLWSIPIMFAFIVSFTCQTFLQSQSKNTIIAFLAAFSIIIHAFLSWLLTMKYEFGIAGAMISTILAYWIPNIGQLIFVTCGWCPETWQGFSFLAFKDLWPVVKLSLSAGAMLCLELWYNTILVLLTGNMKNAEVEIDALSICVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIGIPVGVVLGNVIHWQVKGIWMGMLFGTLIQTIVLLIITYKTNWDEQV*