AlfalfaGEDB | Msa0553510

M. sativa cultivar zhongmu-4 / Msa0553510

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009628 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0080167
PFAM: PF19055.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0553510	QMS43326.1	70.780	551	23	5	4	416	3	553	0.0	744
Msa0553510	QMS43326.1	83.333	66	11	0	407	472	624	689	6.43e-23	114

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0553510	sp\|Q8RWI9\|AB15G_ARATH	53.672	531	109	4	24	417	19	549	0.0	555

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0553510	A0A7D7KGG8	70.780	551	23	5	4	416	3	553	0.0	744
Msa0553510	A0A7D7KGG8	83.333	66	11	0	407	472	624	689	3.07e-23	114

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa0553510	0.836547	8.780049e-57	-8.615850e-47
Msa0008330	Msa0553510	0.814553	1.453157e-51	-8.615850e-47
Msa0062750	Msa0553510	0.813627	2.325411e-51	-8.615850e-47
Msa0102800	Msa0553510	0.835777	1.377444e-56	-8.615850e-47
Msa0141670	Msa0553510	0.805111	1.562805e-49	-8.615850e-47
Msa0147550	Msa0553510	0.855883	4.677431e-62	-8.615850e-47
Msa0157020	Msa0553510	0.803432	3.496300e-49	-8.615850e-47
Msa0207180	Msa0553510	0.848063	7.778763e-60	-8.615850e-47
Msa0212370	Msa0553510	0.801463	8.896723e-49	-8.615850e-47
Msa0219660	Msa0553510	0.807218	5.627338e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0553510	MtrunA17_Chr4g0039251	67.518	548	41	4	5	415	48	595	0.0	718
Msa0553510	MtrunA17_Chr4g0039251	65.152	66	22	1	407	471	667	732	2.51e-17	85.1
Msa0553510	MtrunA17_Chr4g0039261	46.715	548	152	5	7	417	11	555	9.37e-164	478
Msa0553510	MtrunA17_Chr4g0039261	56.364	55	24	0	417	471	635	689	1.48e-13	73.2
Msa0553510	MtrunA17_Chr4g0039231	78.523	298	11	1	76	320	1	298	3.90e-161	470
Msa0553510	MtrunA17_Chr4g0039231	80.909	110	1	1	327	416	404	513	8.03e-48	174
Msa0553510	MtrunA17_Chr4g0039231	83.333	66	11	0	407	472	584	649	3.85e-27	115
Msa0553510	MtrunA17_Chr6g0477811	39.048	525	176	8	30	415	47	566	1.40e-116	357
Msa0553510	MtrunA17_Chr4g0050291	33.766	539	201	11	23	417	21	547	1.38e-81	265
Msa0553510	MtrunA17_Chr4g0050251	32.781	543	208	9	15	417	43	568	3.51e-80	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0553510	AT3G21090.1	53.672	531	109	4	24	417	19	549	0.0	555
Msa0553510	AT3G21090.1	47.945	73	31	1	407	472	619	691	5.65e-11	65.5
Msa0553510	AT1G51500.1	51.970	533	117	6	24	417	18	550	0.0	531
Msa0553510	AT1G51460.1	41.978	536	164	5	29	417	9	544	2.15e-133	400
Msa0553510	AT1G51460.1	43.373	83	39	2	389	471	604	678	3.31e-12	69.3
Msa0553510	AT1G17840.1	41.366	527	165	8	30	417	50	571	8.82e-123	374
Msa0553510	AT2G28070.2	27.726	541	239	10	17	415	98	628	1.08e-50	184
Msa0553510	AT2G28070.1	27.726	541	239	10	17	415	98	628	1.08e-50	184
Msa0553510	AT2G01320.7	22.541	488	233	9	14	373	48	518	8.15e-32	128
Msa0553510	AT2G01320.6	22.541	488	233	9	14	373	48	518	8.15e-32	128

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Find 229 sgRNAs with CRISPR-Local

Find 1131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTAAAAGATATAAGA+AGG	0.514944	4_1:-50736320	None:intergenic
AAATGATCTCCTTGTCAGTG+TGG	0.633740	4_1:-50752306	None:intergenic
AAATGATCTCCTTGTCAGTG+TGG	0.643127	4_1:-50739416	None:intergenic
AACACATAGTGCATGAATCC+TGG	0.485334	4_1:-50739993	None:intergenic
AACACGTAGTGGATGAATCC+TGG	0.512355	4_1:-50753139	None:intergenic
AACACTAATTGATAGTTAAT+TGG	0.269187	4_1:+50736270	Msa0553510:five_prime_UTR
AACAGGTTTATAATCACGAA+AGG	0.596628	4_1:+50739850	Msa0553510:intron
AACATGGTGAAATTCAGGCC+AGG	0.575455	4_1:+50753121	Msa0553510:CDS
AACATGGTGAAATTCAGGCC+AGG	0.597364	4_1:+50739975	Msa0553510:five_prime_UTR
AACCAGAAAGAAGAATATAT+AGG	0.496013	4_1:+50742194	Msa0553510:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATAGATGGGAAGTTAATT+GGG	-	chr4_1:50736216-50736235	None:intergenic	30.0%
TGAATAGATGGGAAGTTAAT+TGG	-	chr4_1:50736217-50736236	None:intergenic	30.0%
AATGATATTTGCATGTTTCG+TGG	-	chr4_1:50737316-50737335	None:intergenic	30.0%
CTTAAATGTCTAAATGTTGC+AGG	+	chr4_1:50737629-50737648	Msa0553510:intron	30.0%
TGATGGAACAATCATTGAAA+CGG	+	chr4_1:50738041-50738060	Msa0553510:five_prime_UTR	30.0%
TCGCTGTTTAAATATGTTTC+TGG	+	chr4_1:50738440-50738459	Msa0553510:intron	30.0%
TCTGGTCTCTTCAAATATAT+AGG	+	chr4_1:50738458-50738477	Msa0553510:intron	30.0%
CTATTCCAAAAGATCCTATA+TGG	-	chr4_1:50738650-50738669	None:intergenic	30.0%
GCTAGTGATAAATGTATTAC+AGG	+	chr4_1:50739336-50739355	Msa0553510:intron	30.0%
GTGATAAATGTATTACAGGA+AGG	+	chr4_1:50739340-50739359	Msa0553510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	50736201	50755020	50736201	ID=Msa0553510;Name=Msa0553510
chr4_1	mRNA	50736201	50755020	50736201	ID=Msa0553510-mRNA-1;Parent=Msa0553510;Name=Msa0553510-mRNA-1;_AED=0.14;_eAED=0.14;_QI=2512\|0.66\|0.57\|1\|0.66\|0.57\|19\|0\|472
chr4_1	exon	50736201	50736643	50736201	ID=Msa0553510-mRNA-1:exon:14346;Parent=Msa0553510-mRNA-1
chr4_1	exon	50737651	50737730	50737651	ID=Msa0553510-mRNA-1:exon:14347;Parent=Msa0553510-mRNA-1
chr4_1	exon	50737922	50738383	50737922	ID=Msa0553510-mRNA-1:exon:14348;Parent=Msa0553510-mRNA-1
chr4_1	exon	50738500	50738622	50738500	ID=Msa0553510-mRNA-1:exon:14349;Parent=Msa0553510-mRNA-1
chr4_1	exon	50739079	50739210	50739079	ID=Msa0553510-mRNA-1:exon:14350;Parent=Msa0553510-mRNA-1
chr4_1	exon	50739358	50739642	50739358	ID=Msa0553510-mRNA-1:exon:14351;Parent=Msa0553510-mRNA-1
chr4_1	exon	50739855	50740127	50739855	ID=Msa0553510-mRNA-1:exon:14352;Parent=Msa0553510-mRNA-1
chr4_1	exon	50740219	50740326	50740219	ID=Msa0553510-mRNA-1:exon:14353;Parent=Msa0553510-mRNA-1
chr4_1	exon	50741830	50742444	50741830	ID=Msa0553510-mRNA-1:exon:14354;Parent=Msa0553510-mRNA-1
chr4_1	exon	50745993	50746185	50745993	ID=Msa0553510-mRNA-1:exon:14355;Parent=Msa0553510-mRNA-1
chr4_1	exon	50749685	50749764	50749685	ID=Msa0553510-mRNA-1:exon:14356;Parent=Msa0553510-mRNA-1
chr4_1	exon	50750792	50750955	50750792	ID=Msa0553510-mRNA-1:exon:14357;Parent=Msa0553510-mRNA-1
chr4_1	exon	50751115	50751253	50751115	ID=Msa0553510-mRNA-1:exon:14358;Parent=Msa0553510-mRNA-1
chr4_1	exon	50751365	50751487	50751365	ID=Msa0553510-mRNA-1:exon:14359;Parent=Msa0553510-mRNA-1
chr4_1	exon	50751950	50752081	50751950	ID=Msa0553510-mRNA-1:exon:14360;Parent=Msa0553510-mRNA-1
chr4_1	exon	50752248	50752385	50752248	ID=Msa0553510-mRNA-1:exon:14361;Parent=Msa0553510-mRNA-1
chr4_1	exon	50753001	50753213	50753001	ID=Msa0553510-mRNA-1:exon:14362;Parent=Msa0553510-mRNA-1
chr4_1	exon	50753365	50753421	50753365	ID=Msa0553510-mRNA-1:exon:14363;Parent=Msa0553510-mRNA-1
chr4_1	exon	50754850	50755020	50754850	ID=Msa0553510-mRNA-1:exon:14364;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50736201	50736643	50736201	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50737651	50737730	50737651	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50737922	50738383	50737922	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50738500	50738622	50738500	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50739079	50739210	50739079	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50739358	50739642	50739358	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50739855	50740127	50739855	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50740219	50740326	50740219	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	five_prime_UTR	50741830	50742435	50741830	ID=Msa0553510-mRNA-1:five_prime_utr;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50742436	50742444	50742436	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50745993	50746185	50745993	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50749685	50749764	50749685	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50750792	50750955	50750792	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50751115	50751253	50751115	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50751365	50751487	50751365	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50751950	50752081	50751950	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50752248	50752385	50752248	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50753001	50753213	50753001	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50753365	50753421	50753365	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1
chr4_1	CDS	50754850	50755020	50754850	ID=Msa0553510-mRNA-1:cds;Parent=Msa0553510-mRNA-1

Gene Sequence

>Msa0553510

ATGGTAATTATTGGTAGCAACAACAAAGGATGCAACATGGATGAGAGCGAGGATGAAGCATATTGTGGTCTTAATAGAGGAAGCTTTTTAGCATGGGAAGATGTAAGAGTTATGTTGCCAAATTTTGGGAAAGGACCAACCAAAAGGTTACTTAATGGGTTAAATGGTTTTGCTGAGCCTGGTAGAATCATGGCTATCATGGGTAGACTTCCAAAAAATGTGGTGATGACGGGAAATGTTCTTCTCAATGGAAAGAAAAAAATTCCGAACTATGGTTTTGTTGCATACGTAACACAAGAAGATGTGTTGTTAGGAACTCTTACAGTGAAAGAAACGATAACATATTCAGCACATTTACGTCTTCCATCAACAATGTCCAAAGAAGAAGTCAACAGCATAATCGATGGAACAATCATAGAAATGGGTCTCCAAGACTGTGCAGATAGAAATATCGCTCATGATGGAAGGACTGTTATTTCTTCTATTCATCAACCTAACAGTGAAGTCTTTGCACTTTTTGATGACCTTTTCTTGCTCGCTCGTGGTGAAACTGTTTATTTTGGTGAAGCCAAAATGGCAATTGAGTTTTTTGCTGAAGCTGGTTTCCCTTGTCCGCGTAAAAGAAATCCTTCTGATCACTTCCTAAGATGTATCAATTCTGATTTCGACGTTGTAACAGCTACAATAAAGGGGTCTCAAAGAATTCATGATGTTCCAAATTCAGCAGATCCTTTCATGAATTTGGCTACAGCACAGATTAAGTCAATGCTAGTTGAGAGATTTAAGCGTTCAACGTATGCCAGAAGGGTAAAAGACAAGATTCAAGAACAATCAACCAATAAAGGGCTTGAAACTGCGATAAACTATGGAAGCCAAGCTAGTTGGTGGAAGCAATTCTCCACACTGACAAGGAGATCATTTGTGAACATGTGTCGAGATATTGGTTACTACTGGTTGAGAATTATAATCAACATCATTGTATTTTATAGAGAAAGGATGAATGGATACTACGGAGTAGCAGCCTATATTTTAGCAAACTTTATTTCATCATTCCCATTCCTGGTTGTTATTGCTCTTACTTCTTGCACAATCACATATAACATGGTGAAATTCAGGCCAGGATTCATCCACTACGTGTTTTTCACTCTTAACGTCTATGGATGCCTCTCAGTGATCGAGAGTATCATGATGGGAATCATGATGATGGCCTCTGGATTCTTTAGGTTGCTATCTGATCTTCCAAAAGTGTTCAAGGAAAGAGCTTTACCATTATTTCAAGCACTCTATGCAAAAAGAACCTTACATCAGCTTGAGAAAAGGCCTTCTTTAAAGAAAATGCCATCGTTTCCTTCCATGAGGCGTCAACCACTTCATTCACTATCTTCTCAAGAGGATCTTGATTCTCCACTCCACTACTAG

Protein sequence

>Msa0553510

MVIIGSNNKGCNMDESEDEAYCGLNRGSFLAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGRLPKNVVMTGNVLLNGKKKIPNYGFVAYVTQEDVLLGTLTVKETITYSAHLRLPSTMSKEEVNSIIDGTIIEMGLQDCADRNIAHDGRTVISSIHQPNSEVFALFDDLFLLARGETVYFGEAKMAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDVVTATIKGSQRIHDVPNSADPFMNLATAQIKSMLVERFKRSTYARRVKDKIQEQSTNKGLETAINYGSQASWWKQFSTLTRRSFVNMCRDIGYYWLRIIINIIVFYRERMNGYYGVAAYILANFISSFPFLVVIALTSCTITYNMVKFRPGFIHYVFFTLNVYGCLSVIESIMMGIMMMASGFFRLLSDLPKVFKERALPLFQALYAKRTLHQLEKRPSLKKMPSFPSMRRQPLHSLSSQEDLDSPLHY*