AlfalfaGEDB | Msa0696860

M. sativa cultivar zhongmu-4 / Msa0696860

KEGG: K11721
GO: GO:0007275 GO:0007346 GO:0008150 GO:0009292 GO:0009294 GO:0009987 GO:0022622 GO:0032501 GO:0032502 GO:0044764 GO:0045787 GO:0045931 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051704 GO:0051726 GO:0065007 GO:0099402
PFAM: PF00439.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696860	XP_003608349.1	96.998	533	16	0	1	533	1	533	0.0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696860	sp\|Q8H1D7\|GTE5_ARATH	37.995	379	194	10	55	420	49	399	2.47e-58	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696860	G7JU12	96.998	533	16	0	1	533	1	533	0.0	1055

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021210	Msa0696860	0.802759	4.816961e-49	-8.615850e-47
Msa0035120	Msa0696860	0.803417	3.520607e-49	-8.615850e-47
Msa0043500	Msa0696860	0.816381	5.694091e-52	-8.615850e-47
Msa0043650	Msa0696860	0.816667	4.913544e-52	-8.615850e-47
Msa0046560	Msa0696860	0.840425	8.765960e-58	-8.615850e-47
Msa0054820	Msa0696860	0.820588	6.336789e-53	-8.615850e-47
Msa0055070	Msa0696860	0.814903	1.215622e-51	-8.615850e-47
Msa0056450	Msa0696860	0.813658	2.289338e-51	-8.615850e-47
Msa0089980	Msa0696860	0.813632	2.320229e-51	-8.615850e-47
Msa0090010	Msa0696860	0.811073	8.402729e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696860	MtrunA17_Chr4g0049491	96.998	533	16	0	1	533	1	533	0.0	1055
Msa0696860	MtrunA17_Chr4g0049471	82.931	539	43	6	1	533	1	496	0.0	812
Msa0696860	MtrunA17_Chr2g0325391	45.763	295	132	6	131	425	283	549	3.18e-68	233
Msa0696860	MtrunA17_Chr4g0040981	45.139	288	114	8	145	425	656	906	3.12e-64	226
Msa0696860	MtrunA17_Chr2g0325411	43.878	294	119	8	141	425	304	560	5.58e-64	220
Msa0696860	MtrunA17_Chr3g0116311	28.041	485	226	15	51	487	79	488	1.05e-41	159
Msa0696860	MtrunA17_Chr7g0230041	32.277	347	163	11	145	487	183	461	2.60e-35	140
Msa0696860	MtrunA17_Chr6g0462121	27.431	401	224	12	74	460	2	349	4.10e-29	118
Msa0696860	MtrunA17_Chr2g0285151	40.571	175	91	5	95	266	29	193	9.87e-27	113
Msa0696860	MtrunA17_Chr7g0230031	51.190	84	36	1	145	228	198	276	1.27e-21	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0696860	AT1G73150.2	38.287	397	208	9	37	429	23	386	3.74e-63	213
Msa0696860	AT1G17790.1	37.995	379	194	10	55	420	49	399	2.51e-59	204
Msa0696860	AT1G73150.1	34.461	473	246	11	37	504	23	436	2.06e-55	193
Msa0696860	AT1G06230.2	42.647	272	133	6	144	414	421	670	6.89e-54	195
Msa0696860	AT1G06230.4	42.647	272	133	6	144	414	421	670	6.89e-54	195
Msa0696860	AT1G06230.1	42.647	272	133	6	144	414	421	670	6.89e-54	195
Msa0696860	AT1G06230.3	42.647	272	133	6	144	414	421	670	6.89e-54	195
Msa0696860	AT5G65630.1	58.940	151	54	1	337	487	390	532	2.22e-47	174
Msa0696860	AT5G10550.1	54.667	150	61	2	337	486	385	527	1.29e-41	158
Msa0696860	AT5G14270.2	30.543	442	218	14	77	503	64	431	3.58e-40	155

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Find 155 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAGGCTAAACCACAA+CGG	0.749218	4_4:+66855330	Msa0696860:CDS
AAAGATATGGGTGCTACTGG+TGG	0.649739	4_4:+66856595	Msa0696860:CDS
AACAAGTAGTACAGATCATA+AGG	0.463491	4_4:+66856141	Msa0696860:CDS
AACCAGAGAGGGAAAGGGAG+AGG	0.515203	4_4:+66855841	Msa0696860:CDS
AACTGGTGACTGAGCTAATG+GGG	0.588096	4_4:-66855970	None:intergenic
AAGAAATCAAAGTCAGAGAT+TGG	0.382024	4_4:+66855429	Msa0696860:CDS
AAGGAAGAGAAATGGGCATT+TGG	0.428825	4_4:+66856160	Msa0696860:CDS
AATAATGTGCCTTCAAACAA+AGG	0.557916	4_4:+66856314	Msa0696860:CDS
AATCAGGTGAGTTTAAACCC+AGG	0.697049	4_4:+66855316	Msa0696860:CDS
AATGGGCATTTGGAGCAAGA+TGG	0.522107	4_4:+66856170	Msa0696860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATTGTGAATGATTATCGT+TGG	-	chr4_4:66855193-66855212	None:intergenic	30.0%
AAGAAATCAAAGTCAGAGAT+TGG	+	chr4_4:66855429-66855448	Msa0696860:CDS	30.0%
AGAAATCAAAGTCAGAGATT+GGG	+	chr4_4:66855430-66855449	Msa0696860:CDS	30.0%
AAGCTCATGAAAAACAAAAG+TGG	+	chr4_4:66855486-66855505	Msa0696860:CDS	30.0%
TCATGAAAAACAAAAGTGGT+TGG	+	chr4_4:66855490-66855509	Msa0696860:CDS	30.0%
TCATCAAATTTCTCGTGTAT+TGG	-	chr4_4:66855774-66855793	None:intergenic	30.0%
ACATTCATTTCCCTCTTATT+TGG	-	chr4_4:66856065-66856084	None:intergenic	30.0%
TGTTGAGGAAAAACATAAGT+TGG	+	chr4_4:66856082-66856101	Msa0696860:CDS	30.0%
GTTGAGGAAAAACATAAGTT+GGG	+	chr4_4:66856083-66856102	Msa0696860:CDS	30.0%
AACAAGTAGTACAGATCATA+AGG	+	chr4_4:66856141-66856160	Msa0696860:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	66855027	66856819	66855027	ID=Msa0696860;Name=Msa0696860
chr4_4	mRNA	66855027	66856819	66855027	ID=Msa0696860-mRNA-1;Parent=Msa0696860;Name=Msa0696860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|3\|0\|533
chr4_4	exon	66855027	66856343	66855027	ID=Msa0696860-mRNA-1:exon:19452;Parent=Msa0696860-mRNA-1
chr4_4	exon	66856451	66856676	66856451	ID=Msa0696860-mRNA-1:exon:19453;Parent=Msa0696860-mRNA-1
chr4_4	exon	66856761	66856819	66856761	ID=Msa0696860-mRNA-1:exon:19454;Parent=Msa0696860-mRNA-1
chr4_4	CDS	66855027	66856343	66855027	ID=Msa0696860-mRNA-1:cds;Parent=Msa0696860-mRNA-1
chr4_4	CDS	66856451	66856676	66856451	ID=Msa0696860-mRNA-1:cds;Parent=Msa0696860-mRNA-1
chr4_4	CDS	66856761	66856819	66856761	ID=Msa0696860-mRNA-1:cds;Parent=Msa0696860-mRNA-1

Gene Sequence

>Msa0696860

ATGGCATCGGCTTTATTAGACAACCGTAACGAACCAAATTGGCTGCAACACAGAGGCGGTGGAGCTGAATTCATGGGTAAAGCACCTAACCCTAACCCTAAATTTAGTAACAAAAAGAGAACTCAATCCCCATCAGATGACGCTTCCTCAATCAATCGACGATCCAACGATAATCATTCACAATACGTTACTTTCAACATCGAATCGTACACAAAGACGGAGCTATACGAGCTCAAAAATCGACTCGTATCAGAACTCGACCAAATTCGTCAGCTTAAGACTCGAATTGAATCAGGTGAGTTTAAACCCAGGCTAAACCACAACGGTGGTGGTCCCACTAAGAAATCAGGGAGCAAGAAGGTTTCCGGCAACAAACGACCTTTTCCTGCGGTGAAGGAATTGAAGAAATCAAAGTCAGAGATTGGGGATGCGATGAAGGCTTGTGGTCAGATTTTGACGAAGCTCATGAAAAACAAAAGTGGTTGGATTTTTAACACTTGGATCTTTAACACTCCTGTAAATGCAACGGCTTTGAATCTTCATGATTACTTTGATATAATTAAGCATCCTATGGATCTGGGTACTGTCAAGTCAAAACTTGCTAAGAATGCTTACTCTACGCCGGCGGATTTTGCTGCTGATGTGAAGTTAACGTTCAACAATGCATTGACATACAATCCCAAGGGCCATGATGTTAACACTGCGGCGAAGCAGCTTCTTGAAAAATTCGAGGAGCTTTATCGACCAATACACGAGAAATTTGATGAAAAAAGTTTTGATGATGAATTACAGGCTAGCTCGTGGAACCATGTTGAACCAGAGAGGGAAAGGGAGAGGGTGAAGAAGAAAGATAATCCAATTCCAATCCCTCCACCGGTAGCAAAACGCCAAGAGCCACTGCCTGAGCCTGCTAGTACTTCTAACCAGCCAAGCACTTCGAATCCCCCATTAGCTCAGTCACCAGTTCGCATACCCTCCCCAACTCGAGCACTTCCAGTGAAGCCCTTGAAGCAGCCCAAGCCAAAGGCCAGGGATCCAAATAAGAGGGAAATGAATGTTGAGGAAAAACATAAGTTGGGACTAGGGTTGCAGATTTTGCCACCAGAGAAGATGGAACAAGTAGTACAGATCATAAGGAAGAGAAATGGGCATTTGGAGCAAGATGGGGATGAGATTGAGCTTGATATGGAGGCTGTTGACACGGAGACTCTCTGGGAACTCGATCGATTGGTTACCAATTGGAAAAAGATGGTGAGCAAGATTAAGCGGCAGGCGCTAATGGATAATAATAATGTGCCTTCAAACAAAGGCAATGGGGAATTGCCTGATAGGGAGAAGGTTGATGCAACCCCTCCTTCTGAGGGGAAGAAGCAGAAGAAGATAGATACTGTTGACGAGGATGTTGACATCGGCGATGATATGCCAGCAAACAACTTCCCACCTGTGGAGATTGAGAAAGATAAAGATATGGGTGCTACTGGTGGCGGTGCCAGTAGTAGTTCCAGTGGCTCCAGCAGTTCTGGTAGTGATTCCTCGTCTAGTGATTCGGATTCAGGGAGTTCTTCAGGAAGTGACTCTGAAGCGGGCAATGGTCATTTGTAG

Protein sequence

>Msa0696860

MASALLDNRNEPNWLQHRGGGAEFMGKAPNPNPKFSNKKRTQSPSDDASSINRRSNDNHSQYVTFNIESYTKTELYELKNRLVSELDQIRQLKTRIESGEFKPRLNHNGGGPTKKSGSKKVSGNKRPFPAVKELKKSKSEIGDAMKACGQILTKLMKNKSGWIFNTWIFNTPVNATALNLHDYFDIIKHPMDLGTVKSKLAKNAYSTPADFAADVKLTFNNALTYNPKGHDVNTAAKQLLEKFEELYRPIHEKFDEKSFDDELQASSWNHVEPERERERVKKKDNPIPIPPPVAKRQEPLPEPASTSNQPSTSNPPLAQSPVRIPSPTRALPVKPLKQPKPKARDPNKREMNVEEKHKLGLGLQILPPEKMEQVVQIIRKRNGHLEQDGDEIELDMEAVDTETLWELDRLVTNWKKMVSKIKRQALMDNNNVPSNKGNGELPDREKVDATPPSEGKKQKKIDTVDEDVDIGDDMPANNFPPVEIEKDKDMGATGGGASSSSSGSSSSGSDSSSSDSDSGSSSGSDSEAGNGHL*