Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575170 | XP_003631000.1 | 92.508 | 307 | 3 | 1 | 1 | 287 | 1 | 307 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575170 | sp|Q9LHE5|TO401_ARATH | 68.285 | 309 | 75 | 3 | 1 | 286 | 1 | 309 | 1.62e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575170 | G7LBI9 | 92.508 | 307 | 3 | 1 | 1 | 287 | 1 | 307 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0575170 | 0.816637 | 4.990661e-52 | -8.615850e-47 |
| Msa0003780 | Msa0575170 | 0.817152 | 3.824109e-52 | -8.615850e-47 |
| Msa0094470 | Msa0575170 | 0.808850 | 2.528327e-50 | -8.615850e-47 |
| Msa0146340 | Msa0575170 | 0.801005 | 1.104076e-48 | -8.615850e-47 |
| Msa0150300 | Msa0575170 | 0.814446 | 1.534737e-51 | -8.615850e-47 |
| Msa0187690 | Msa0575170 | 0.802508 | 5.428007e-49 | -8.615850e-47 |
| Msa0187930 | Msa0575170 | 0.821695 | 3.522357e-53 | -8.615850e-47 |
| Msa0194540 | Msa0575170 | 0.811899 | 5.558396e-51 | -8.615850e-47 |
| Msa0366890 | Msa0575170 | 0.802585 | 5.233140e-49 | -8.615850e-47 |
| Msa0387730 | Msa0575170 | 0.806680 | 7.314423e-50 | -8.615850e-47 |
| Msa0402650 | Msa0575170 | 0.855420 | 6.387245e-62 | -8.615850e-47 |
| Msa0449210 | Msa0575170 | 0.843681 | 1.206287e-58 | -8.615850e-47 |
| Msa0244780 | Msa0575170 | 0.831778 | 1.376402e-55 | -8.615850e-47 |
| Msa0250820 | Msa0575170 | 0.830024 | 3.706400e-55 | -8.615850e-47 |
| Msa0268130 | Msa0575170 | 0.827822 | 1.264844e-54 | -8.615850e-47 |
| Msa0280610 | Msa0575170 | 0.828064 | 1.106293e-54 | -8.615850e-47 |
| Msa0298990 | Msa0575170 | 0.836564 | 8.690466e-57 | -8.615850e-47 |
| Msa0327330 | Msa0575170 | 0.819516 | 1.114726e-52 | -8.615850e-47 |
| Msa0497490 | Msa0575170 | 0.864171 | 1.473387e-64 | -8.615850e-47 |
| Msa0518390 | Msa0575170 | 0.811706 | 6.121550e-51 | -8.615850e-47 |
| Msa0518450 | Msa0575170 | 0.802671 | 5.021533e-49 | -8.615850e-47 |
| Msa0526540 | Msa0575170 | 0.806663 | 7.372885e-50 | -8.615850e-47 |
| Msa0571920 | Msa0575170 | 0.809692 | 1.668544e-50 | -8.615850e-47 |
| Msa0575170 | Msa0576940 | 0.815251 | 1.017373e-51 | -8.615850e-47 |
| Msa0575170 | Msa0608320 | 0.811780 | 5.897841e-51 | -8.615850e-47 |
| Msa0575170 | Msa0647500 | 0.844688 | 6.474921e-59 | -8.615850e-47 |
| Msa0575170 | Msa0689260 | 0.816788 | 4.616678e-52 | -8.615850e-47 |
| Msa0575170 | Msa0690150 | 0.822894 | 1.855906e-53 | -8.615850e-47 |
| Msa0575170 | Msa0711780 | 0.811674 | 6.220814e-51 | -8.615850e-47 |
| Msa0575170 | Msa0757830 | 0.850346 | 1.801685e-60 | -8.615850e-47 |
| Msa0575170 | Msa0784200 | 0.827484 | 1.525176e-54 | -8.615850e-47 |
| Msa0575170 | Msa0788850 | 0.850805 | 1.338945e-60 | -8.615850e-47 |
| Msa0575170 | Msa0794670 | 0.819097 | 1.388632e-52 | -8.615850e-47 |
| Msa0575170 | Msa0818310 | 0.821834 | 3.270011e-53 | -8.615850e-47 |
| Msa0575170 | Msa0858770 | 0.839514 | 1.513701e-57 | -8.615850e-47 |
| Msa0575170 | Msa0902760 | 0.820951 | 5.227605e-53 | -8.615850e-47 |
| Msa0575170 | Msa0968590 | 0.816684 | 4.872062e-52 | -8.615850e-47 |
| Msa0575170 | Msa0989540 | 0.803381 | 3.582869e-49 | -8.615850e-47 |
| Msa0575170 | Msa1013400 | 0.841031 | 6.079769e-58 | -8.615850e-47 |
| Msa0575170 | Msa1043690 | 0.829927 | 3.914347e-55 | -8.615850e-47 |
| Msa0575170 | Msa1050210 | 0.834547 | 2.813806e-56 | -8.615850e-47 |
| Msa0575170 | Msa1051880 | 0.806309 | 8.755665e-50 | -8.615850e-47 |
| Msa0575170 | Msa1081150 | 0.819831 | 9.447631e-53 | -8.615850e-47 |
| Msa0575170 | Msa1093530 | 0.823317 | 1.478100e-53 | -8.615850e-47 |
| Msa0575170 | Msa1101600 | 0.803098 | 4.098594e-49 | -8.615850e-47 |
| Msa0575170 | Msa1104140 | 0.825288 | 5.087879e-54 | -8.615850e-47 |
| Msa0575170 | Msa1126510 | 0.829951 | 3.862606e-55 | -8.615850e-47 |
| Msa0575170 | Msa1165940 | 0.833470 | 5.236853e-56 | -8.615850e-47 |
| Msa0575170 | Msa1166860 | 0.839961 | 1.158039e-57 | -8.615850e-47 |
| Msa0575170 | Msa1213480 | 0.813608 | 2.348645e-51 | -8.615850e-47 |
| Msa0575170 | Msa1215820 | 0.810023 | 1.416282e-50 | -8.615850e-47 |
| Msa0575170 | Msa1218600 | 0.832040 | 1.186205e-55 | -8.615850e-47 |
| Msa0575170 | Msa1257510 | 0.835694 | 1.445802e-56 | -8.615850e-47 |
| Msa0575170 | Msa1300380 | 0.805306 | 1.422708e-49 | -8.615850e-47 |
| Msa0575170 | Msa1358250 | 0.823556 | 1.300114e-53 | -8.615850e-47 |
| Msa0575170 | Msa1361100 | 0.801946 | 7.083187e-49 | -8.615850e-47 |
| Msa0575170 | Msa1363330 | 0.811908 | 5.531732e-51 | -8.615850e-47 |
| Msa0575170 | Msa1374120 | 0.843583 | 1.282000e-58 | -8.615850e-47 |
| Msa0575170 | Msa1382620 | 0.825173 | 5.415483e-54 | -8.615850e-47 |
| Msa0575170 | Msa1386600 | 0.810976 | 8.816316e-51 | -8.615850e-47 |
| Msa0575170 | Msa1394290 | 0.815311 | 9.866650e-52 | -8.615850e-47 |
| Msa0575170 | Msa1399530 | 0.801435 | 9.015503e-49 | -8.615850e-47 |
| Msa0575170 | Msa1407460 | 0.807303 | 5.399335e-50 | -8.615850e-47 |
| Msa0575170 | Msa1418760 | 0.805484 | 1.305674e-49 | -8.615850e-47 |
| Msa0575170 | Msa1448690 | 0.842096 | 3.185497e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575170 | MtrunA17_Chr8g0392181 | 92.508 | 307 | 3 | 1 | 1 | 287 | 1 | 307 | 0.0 | 582 |
| Msa0575170 | MtrunA17_Chr8g0392211 | 86.275 | 153 | 8 | 1 | 4 | 156 | 1 | 140 | 1.64e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575170 | AT3G20000.1 | 68.285 | 309 | 75 | 3 | 1 | 286 | 1 | 309 | 1.64e-156 | 439 |
| Msa0575170 | AT1G50400.1 | 60.586 | 307 | 97 | 3 | 1 | 283 | 1 | 307 | 7.81e-131 | 374 |
| Msa0575170 | AT3G20000.2 | 68.354 | 237 | 55 | 1 | 70 | 286 | 2 | 238 | 6.45e-118 | 338 |
Find 91 sgRNAs with CRISPR-Local
Find 466 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATACTTCAAAATTTATT+TGG | 0.092128 | 4_1:-78938834 | Msa0575170:three_prime_UTR |
| CGTTGGGTGGAGAGGTATTT+TGG | 0.132290 | 4_1:-78941916 | Msa0575170:CDS |
| GAACTTCTGGTTAAGCATTT+TGG | 0.158208 | 4_1:+78945176 | None:intergenic |
| CTTGATGTCCTTGAATAATT+TGG | 0.172727 | 4_1:-78938646 | Msa0575170:three_prime_UTR |
| TCGCTACAACACTGATAAAA+TGG | 0.287276 | 4_1:-78941855 | Msa0575170:intron |
| GATGATCAACTTTGATTATA+AGG | 0.301778 | 4_1:-78944091 | Msa0575170:intron |
| AAAGACTACAAATTTGGATT+TGG | 0.302340 | 4_1:-78939046 | Msa0575170:CDS |
| ATCTCTAACAATGGCGACTA+TGG | 0.308328 | 4_1:-78945446 | Msa0575170:exon |
| AGAATTAATCAAGTTAATAA+AGG | 0.323136 | 4_1:-78938568 | Msa0575170:three_prime_UTR |
| GAAAACTTGCAAGGCTAGTC+TGG | 0.346012 | 4_1:+78938965 | None:intergenic |
| TGTGATTAAGAGAGAACTTC+TGG | 0.357348 | 4_1:+78945163 | None:intergenic |
| TTGGTGATTTGTTTATGATT+TGG | 0.377236 | 4_1:-78938627 | Msa0575170:three_prime_UTR |
| GCTAGGGGCAAGTTATATTC+AGG | 0.378150 | 4_1:-78943865 | Msa0575170:intron |
| TTATCGTCGGCGGTGGGAAT+CGG | 0.393346 | 4_1:+78945418 | None:intergenic |
| AAAACCCTTGTTTGTTTCGT+TGG | 0.399490 | 4_1:+78945502 | None:intergenic |
| TACAGAACACAGTTTCAAAT+GGG | 0.420179 | 4_1:-78943900 | Msa0575170:CDS |
| GTCACAAGCATAGCATACTT+TGG | 0.429505 | 4_1:-78945532 | Msa0575170:five_prime_UTR |
| GCTAGTCTGGCTAAAGGAAA+TGG | 0.433187 | 4_1:+78938978 | None:intergenic |
| TTACAGAACACAGTTTCAAA+TGG | 0.437411 | 4_1:-78943901 | Msa0575170:CDS |
| GACCTTCTTATCGTCGGCGG+TGG | 0.437644 | 4_1:+78945411 | None:intergenic |
| AGAGACGTCACTGCTAGCTT+TGG | 0.445106 | 4_1:-78940711 | Msa0575170:CDS |
| TTTGGATTTGGTTTGACCGT+TGG | 0.447555 | 4_1:-78939034 | Msa0575170:CDS |
| GTGACAAATCATTTATCGTT+GGG | 0.449646 | 4_1:-78941932 | Msa0575170:CDS |
| ATGGGGAATGGAGCCTTGCT+AGG | 0.464451 | 4_1:-78943882 | Msa0575170:CDS |
| ATGAAGTTCTTCGAAGGGAA+TGG | 0.465390 | 4_1:+78945354 | None:intergenic |
| AGTATTGTTGGGTCAATTTG+TGG | 0.466133 | 4_1:+78938849 | None:intergenic |
| GTGATTTGTTTATGATTTGG+TGG | 0.472464 | 4_1:-78938624 | Msa0575170:three_prime_UTR |
| TCACAAGCATAGCATACTTT+GGG | 0.476778 | 4_1:-78945531 | Msa0575170:five_prime_UTR |
| ACAAATCACCAAATTATTCA+AGG | 0.477499 | 4_1:+78938638 | None:intergenic |
| CAAAAGAACCATTCCAGTGC+TGG | 0.487484 | 4_1:+78940875 | None:intergenic |
| CACTTTGAAAGCCAATGCTC+AGG | 0.493817 | 4_1:-78944490 | Msa0575170:intron |
| TGAAGTTCTTCGAAGGGAAT+GGG | 0.496501 | 4_1:+78945355 | None:intergenic |
| ACAGGACAAGTTGCCAGCAC+TGG | 0.498458 | 4_1:-78940888 | Msa0575170:CDS |
| TGTGACAAATCATTTATCGT+TGG | 0.503304 | 4_1:-78941933 | Msa0575170:CDS |
| TGGGGAATGGAGCCTTGCTA+GGG | 0.504773 | 4_1:-78943881 | Msa0575170:CDS |
| TGATTTGTTTATGATTTGGT+GGG | 0.507943 | 4_1:-78938623 | Msa0575170:three_prime_UTR |
| GCTGGTCAGCATCGAAAGTC+CGG | 0.511836 | 4_1:-78941893 | Msa0575170:CDS |
| GGGAATGGGACAAGGAAGGT+TGG | 0.514697 | 4_1:+78945369 | None:intergenic |
| CTGATCGACCTTCTTATCGT+CGG | 0.517975 | 4_1:+78945405 | None:intergenic |
| ATCTGCATCCAGGTTGCCAC+AGG | 0.518788 | 4_1:-78940906 | Msa0575170:intron |
| TGGAATCAACCTTTCCCCTA+AGG | 0.518820 | 4_1:+78939301 | None:intergenic |
| TCCCACCGCCGACGATAAGA+AGG | 0.521314 | 4_1:-78945413 | Msa0575170:CDS |
| ATAGTGCCGCCTTAGGGGAA+AGG | 0.523846 | 4_1:-78939310 | Msa0575170:intron |
| AAAAGCAGCGCAAACACCAT+TGG | 0.525102 | 4_1:+78939281 | None:intergenic |
| GAATTTCATTCTTTCTGCAG+AGG | 0.535381 | 4_1:-78939232 | Msa0575170:intron |
| ACCTTCTTATCGTCGGCGGT+GGG | 0.536779 | 4_1:+78945412 | None:intergenic |
| TTTGATACTCAGTGTTTCGA+TGG | 0.538232 | 4_1:-78945038 | Msa0575170:intron |
| GTTGGAGAATAAATTAGAGC+TGG | 0.541304 | 4_1:-78939016 | Msa0575170:exon |
| TGCAAGGCTAGTCTGGCTAA+AGG | 0.543465 | 4_1:+78938972 | None:intergenic |
| TGAAAAGAAGAAAACAAAGG+AGG | 0.545593 | 4_1:-78938908 | Msa0575170:three_prime_UTR |
| AGCTCTAATTTATTCTCCAA+CGG | 0.548927 | 4_1:+78939018 | None:intergenic |
| CTCTCTCTGATCTCTAACAA+TGG | 0.550157 | 4_1:-78945455 | Msa0575170:exon |
| TTGGGGAGAGCTATGACTGA+TGG | 0.555017 | 4_1:-78944555 | Msa0575170:CDS |
| TCATTTATCGTTGGGTGGAG+AGG | 0.555729 | 4_1:-78941924 | Msa0575170:CDS |
| TTCGTAACTATATCTTCCGA+AGG | 0.557440 | 4_1:-78938544 | None:intergenic |
| ACACAGTTTCAAATGGGGAA+TGG | 0.557932 | 4_1:-78943894 | Msa0575170:CDS |
| ACACGCACACACCTGAGCAT+TGG | 0.559191 | 4_1:+78944479 | None:intergenic |
| AGGGGAAAGGTTGATTCCAA+TGG | 0.561118 | 4_1:-78939297 | Msa0575170:CDS |
| TGTTCAGAAGGTTTCTGAGA+AGG | 0.565720 | 4_1:-78940847 | Msa0575170:intron |
| TTGATACTCAGTGTTTCGAT+GGG | 0.565904 | 4_1:-78945037 | Msa0575170:intron |
| ACAAGTTGCCAGCACTGGAA+TGG | 0.569505 | 4_1:-78940883 | Msa0575170:CDS |
| TCGTCGGCGGTGGGAATCGG+TGG | 0.572496 | 4_1:+78945421 | None:intergenic |
| TTTGGAGGAGAGGTTAAACA+TGG | 0.573440 | 4_1:-78939259 | Msa0575170:CDS |
| ACGAACCAACGAAACAAACA+AGG | 0.573866 | 4_1:-78945507 | Msa0575170:five_prime_UTR |
| CAGCATCGAAAGTCCGGTGT+AGG | 0.581073 | 4_1:-78941887 | Msa0575170:CDS |
| GAGGAATATATCATTTGTGT+CGG | 0.583957 | 4_1:-78938889 | Msa0575170:three_prime_UTR |
| TTCGCGATGAAGTTCTTCGA+AGG | 0.585780 | 4_1:+78945348 | None:intergenic |
| AATATAACTTGCCCCTAGCA+AGG | 0.586184 | 4_1:+78943869 | None:intergenic |
| ATCATCCCTTGCGACATATG+TGG | 0.586885 | 4_1:+78944108 | None:intergenic |
| CGAAGGGAATGGGACAAGGA+AGG | 0.594895 | 4_1:+78945365 | None:intergenic |
| TCGCGATGAAGTTCTTCGAA+GGG | 0.595915 | 4_1:+78945349 | None:intergenic |
| AGAAGTTCTCTCTTAATCAC+AGG | 0.600557 | 4_1:-78945161 | Msa0575170:intron |
| GGAGAGCTATGACTGATGGA+AGG | 0.601209 | 4_1:-78944551 | Msa0575170:CDS |
| ACAAATCATTTATCGTTGGG+TGG | 0.604461 | 4_1:-78941929 | Msa0575170:CDS |
| GATTCCTTCTCAGTCTGCTG+AGG | 0.606124 | 4_1:-78945005 | Msa0575170:intron |
| TCTTCGAAGGGAATGGGACA+AGG | 0.607908 | 4_1:+78945361 | None:intergenic |
| AGTGAGCCACATATGTCGCA+AGG | 0.608954 | 4_1:-78944114 | Msa0575170:CDS |
| GAGAGCTATGACTGATGGAA+GGG | 0.610985 | 4_1:-78944550 | Msa0575170:CDS |
| ATAACCTCAGCAGACTGAGA+AGG | 0.616639 | 4_1:+78945001 | None:intergenic |
| AGTGCTGGCAACTTGTCCTG+TGG | 0.616700 | 4_1:+78940890 | None:intergenic |
| AAGAAGCAAGAAAACTTGCA+AGG | 0.620169 | 4_1:+78938956 | None:intergenic |
| TTATGACTACATCCTCAGAC+AGG | 0.639986 | 4_1:-78940688 | Msa0575170:intron |
| GTGAGCCACATATGTCGCAA+GGG | 0.643410 | 4_1:-78944113 | Msa0575170:CDS |
| AATCAACCTTTCCCCTAAGG+CGG | 0.646753 | 4_1:+78939304 | None:intergenic |
| ATCGACCTTCTTATCGTCGG+CGG | 0.650422 | 4_1:+78945408 | None:intergenic |
| GACTGAGAAGGAATCTCAGT+AGG | 0.652570 | 4_1:+78945013 | None:intergenic |
| GGGGAATGGAGCCTTGCTAG+GGG | 0.654668 | 4_1:-78943880 | Msa0575170:CDS |
| ACAGAACACAGTTTCAAATG+GGG | 0.668900 | 4_1:-78943899 | Msa0575170:CDS |
| TTGGAGGAGAGGTTAAACAT+GGG | 0.679861 | 4_1:-78939258 | Msa0575170:CDS |
| GCGAGCAGCATAACCTACAC+CGG | 0.690277 | 4_1:+78941874 | None:intergenic |
| CGAACCAACGAAACAAACAA+GGG | 0.743291 | 4_1:-78945506 | Msa0575170:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAACTAAAAACTAAAA+AGG | + | chr4_1:78939188-78939207 | None:intergenic | 10.0% |
| !!! | TGATTATTTTAATTAGTATT+AGG | - | chr4_1:78940355-78940374 | Msa0575170:intron | 10.0% |
| !!! | GATTTTTTTTTATTTAAAGA+TGG | - | chr4_1:78940386-78940405 | Msa0575170:intron | 10.0% |
| !! | AAACAAATATTATTATATCA+AGG | - | chr4_1:78940693-78940712 | Msa0575170:CDS | 10.0% |
| !! | AACAAATATTATTATATCAA+GGG | - | chr4_1:78940694-78940713 | Msa0575170:CDS | 10.0% |
| !!! | TTTTTTGTTACAAAAATTTA+GGG | + | chr4_1:78941370-78941389 | None:intergenic | 10.0% |
| !!! | TTGAAATATTTAATTTCATT+TGG | - | chr4_1:78941459-78941478 | Msa0575170:intron | 10.0% |
| !!! | CCAATTAAAATTTTTAAAAT+AGG | + | chr4_1:78944434-78944453 | None:intergenic | 10.0% |
| !!! | CCTATTTTAAAAATTTTAAT+TGG | - | chr4_1:78944431-78944450 | Msa0575170:intron | 10.0% |
| !!! | TCATTTTCTTAAATTATTAC+AGG | + | chr4_1:78939244-78939263 | None:intergenic | 15.0% |
| !!! | AGTTTGAAATAATTACTTAT+TGG | - | chr4_1:78939786-78939805 | Msa0575170:intron | 15.0% |
| !! | AGAAGAAGAAAAAATAAATA+TGG | + | chr4_1:78940275-78940294 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATTTGAGTGTA+CGG | - | chr4_1:78940511-78940530 | Msa0575170:intron | 15.0% |
| !! | ACAAATATTATTATATCAAG+GGG | - | chr4_1:78940695-78940714 | Msa0575170:CDS | 15.0% |
| !!! | AGATAGAAATTTTTCAATAA+TGG | - | chr4_1:78941015-78941034 | Msa0575170:intron | 15.0% |
| !!! | CTTTTTTGTTACAAAAATTT+AGG | + | chr4_1:78941371-78941390 | None:intergenic | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+TGG | - | chr4_1:78941707-78941726 | Msa0575170:intron | 15.0% |
| !! | TACATGAATATGAAATAATA+AGG | - | chr4_1:78942778-78942797 | Msa0575170:intron | 15.0% |
| !!! | AAATTCATTTTTAGTTTTCT+TGG | + | chr4_1:78942933-78942952 | None:intergenic | 15.0% |
| !!! | ATATACATTTTATGCTAAAA+AGG | + | chr4_1:78943992-78944011 | None:intergenic | 15.0% |
| !!! | ATAAATTTTGAAGTATTGTT+GGG | + | chr4_1:78945257-78945276 | None:intergenic | 15.0% |
| !!! | AATAAATTTTGAAGTATTGT+TGG | + | chr4_1:78945258-78945277 | None:intergenic | 15.0% |
| !! | ACAATACTTCAAAATTTATT+TGG | - | chr4_1:78945258-78945277 | Msa0575170:intron | 15.0% |
| !! | AGAATTAATCAAGTTAATAA+AGG | - | chr4_1:78945524-78945543 | Msa0575170:five_prime_UTR | 15.0% |
| !! | ATAAAATCTAAGAGATACAT+TGG | + | chr4_1:78939718-78939737 | None:intergenic | 20.0% |
| !!! | TCTTAGATTTTATTTGATAG+TGG | - | chr4_1:78939725-78939744 | Msa0575170:intron | 20.0% |
| !! | TTGAAATAATTACTTATTGG+TGG | - | chr4_1:78939789-78939808 | Msa0575170:intron | 20.0% |
| !! | ACAAATGAAATAATCAGAAA+AGG | + | chr4_1:78940039-78940058 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGTAATTTCTTAG+TGG | - | chr4_1:78940085-78940104 | Msa0575170:intron | 20.0% |
| !! | CAATATTGAACTATAAAACA+GGG | + | chr4_1:78940153-78940172 | None:intergenic | 20.0% |
| !! | ACAATATTGAACTATAAAAC+AGG | + | chr4_1:78940154-78940173 | None:intergenic | 20.0% |
| !!! | AGTTCAATATTGTATTTTTC+AGG | - | chr4_1:78940161-78940180 | Msa0575170:intron | 20.0% |
| !!! | GTTCAATATTGTATTTTTCA+GGG | - | chr4_1:78940162-78940181 | Msa0575170:intron | 20.0% |
| !! | ATTAACAAAGAAAGTCATTA+AGG | - | chr4_1:78940314-78940333 | Msa0575170:intron | 20.0% |
| !!! | CACCTTAAGTATTTTTAAAA+TGG | + | chr4_1:78940457-78940476 | None:intergenic | 20.0% |
| !! | CAAATATTATTATATCAAGG+GGG | - | chr4_1:78940696-78940715 | Msa0575170:CDS | 20.0% |
| !! | CCGATATATTAATATAAAAG+GGG | + | chr4_1:78940887-78940906 | None:intergenic | 20.0% |
| !!! | CCCCTTTTATATTAATATAT+CGG | - | chr4_1:78940884-78940903 | Msa0575170:CDS | 20.0% |
| !! | CCCGATATATTAATATAAAA+GGG | + | chr4_1:78940888-78940907 | None:intergenic | 20.0% |
| !!! | CCCTTTTATATTAATATATC+GGG | - | chr4_1:78940885-78940904 | Msa0575170:CDS | 20.0% |
| !! | ACCCGATATATTAATATAAA+AGG | + | chr4_1:78940889-78940908 | None:intergenic | 20.0% |
| !!! | TTTTTAACTGAATAGTAGTT+TGG | - | chr4_1:78941077-78941096 | Msa0575170:intron | 20.0% |
| !! | TCGATGAAATTCAATAAATA+AGG | - | chr4_1:78941695-78941714 | Msa0575170:intron | 20.0% |
| !! | CGATGAAATTCAATAAATAA+GGG | - | chr4_1:78941696-78941715 | Msa0575170:intron | 20.0% |
| !! | AAAAATAATAAATGCTGCAT+TGG | - | chr4_1:78941732-78941751 | Msa0575170:intron | 20.0% |
| !!! | CAATTTTTTCATGTTATCTA+GGG | - | chr4_1:78941918-78941937 | Msa0575170:CDS | 20.0% |
| !!! | TGTTGTGTTGATATTTTAAT+TGG | - | chr4_1:78941954-78941973 | Msa0575170:intron | 20.0% |
| !! | AATTGGATAATATCTATTTC+AGG | - | chr4_1:78941971-78941990 | Msa0575170:intron | 20.0% |
| !! | AATTATGTCTAATGTAAACA+TGG | + | chr4_1:78943491-78943510 | None:intergenic | 20.0% |
| !!! | AAACGTTTTTAGAAAACATA+TGG | + | chr4_1:78944215-78944234 | None:intergenic | 20.0% |
| !! | CATTGAAATTGGAAAAATTA+GGG | + | chr4_1:78944304-78944323 | None:intergenic | 20.0% |
| !! | AAAATAGGCATAAAAAAATC+TGG | + | chr4_1:78944419-78944438 | None:intergenic | 20.0% |
| !! | CAGGATTATTATTAATATCA+GGG | + | chr4_1:78944599-78944618 | None:intergenic | 20.0% |
| !! | ACAGGATTATTATTAATATC+AGG | + | chr4_1:78944600-78944619 | None:intergenic | 20.0% |
| !!! | GCTTTTAAATTGGATAAAAT+CGG | + | chr4_1:78944725-78944744 | None:intergenic | 20.0% |
| !!! | AACAACAAAGAGTTTTAAAA+AGG | + | chr4_1:78944898-78944917 | None:intergenic | 20.0% |
| !!! | TTTTAAAACTCTTTGTTGTT+AGG | - | chr4_1:78944898-78944917 | Msa0575170:intron | 20.0% |
| !!! | TTTAAAACTCTTTGTTGTTA+GGG | - | chr4_1:78944899-78944918 | Msa0575170:intron | 20.0% |
| !! | TAAATATGAAAATCATGTCA+AGG | + | chr4_1:78945001-78945020 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGACTACAAATT+TGG | - | chr4_1:78945040-78945059 | Msa0575170:intron | 20.0% |
| !!! | TTTTGAAAAGAAGAAAACAA+AGG | - | chr4_1:78945181-78945200 | Msa0575170:CDS | 20.0% |
| !!! | TTTTAATGATCTATGAAACT+CGG | - | chr4_1:78945408-78945427 | Msa0575170:CDS | 20.0% |
| ! | CTAAAAACTAAAAAGGAAGA+AGG | + | chr4_1:78939181-78939200 | None:intergenic | 25.0% |
| ! | TTTCTGATTGAAATTGTGTT+TGG | + | chr4_1:78939352-78939371 | None:intergenic | 25.0% |
| ! | ACAATTTCAATCAGAAATGT+TGG | - | chr4_1:78939355-78939374 | Msa0575170:intron | 25.0% |
| !!! | AATTAGAAGTGTCGATTTTA+TGG | - | chr4_1:78939454-78939473 | Msa0575170:intron | 25.0% |
| ! | AAAGACTACGAATAAGAAAA+GGG | + | chr4_1:78939899-78939918 | None:intergenic | 25.0% |
| ! | AAAAGACTACGAATAAGAAA+AGG | + | chr4_1:78939900-78939919 | None:intergenic | 25.0% |
| ! | GATGATCAACTTTGATTATA+AGG | - | chr4_1:78940001-78940020 | Msa0575170:intron | 25.0% |
| !!! | ATATTGTATTTTTCAGGGAA+AGG | - | chr4_1:78940167-78940186 | Msa0575170:intron | 25.0% |
| ! | TCTTCTTCTTTATGAAAATC+TGG | - | chr4_1:78940286-78940305 | Msa0575170:intron | 25.0% |
| !!! | CGCCATTTTAAAAATACTTA+AGG | - | chr4_1:78940452-78940471 | Msa0575170:intron | 25.0% |
| ! | TATGAAGTCATTAGTAAGTT+CGG | - | chr4_1:78941172-78941191 | Msa0575170:intron | 25.0% |
| ! | TATATATTACTCCAAAGGTT+TGG | - | chr4_1:78941197-78941216 | Msa0575170:intron | 25.0% |
| ! | TAACATTAACTTCTCTCTAA+AGG | + | chr4_1:78941282-78941301 | None:intergenic | 25.0% |
| ! | AGATAGTAATAAGTATGCAT+GGG | + | chr4_1:78941487-78941506 | None:intergenic | 25.0% |
| !! | CTCTAAATTATTGTCGTTTA+AGG | - | chr4_1:78941564-78941583 | Msa0575170:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr4_1:78941664-78941683 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr4_1:78941665-78941684 | None:intergenic | 25.0% |
| ! | AAAAAATTGGCCATAACAAA+CGG | + | chr4_1:78941907-78941926 | None:intergenic | 25.0% |
| ! | CCTAGATAACATGAAAAAAT+TGG | + | chr4_1:78941920-78941939 | None:intergenic | 25.0% |
| !!! | CCAATTTTTTCATGTTATCT+AGG | - | chr4_1:78941917-78941936 | Msa0575170:CDS | 25.0% |
| ! | TAAAGCAGTACAATAGTATT+GGG | + | chr4_1:78942409-78942428 | None:intergenic | 25.0% |
| ! | CATAGATATTAAATACCATG+CGG | - | chr4_1:78942487-78942506 | Msa0575170:intron | 25.0% |
| ! | ATAGATATTAAATACCATGC+GGG | - | chr4_1:78942488-78942507 | Msa0575170:intron | 25.0% |
| ! | TAATAGTTACAGCTATAGAA+GGG | + | chr4_1:78942747-78942766 | None:intergenic | 25.0% |
| !! | TCATTTCACTTATTTCTTGT+TGG | - | chr4_1:78943011-78943030 | Msa0575170:intron | 25.0% |
| ! | TTGTTGGAATAAATACTCAA+GGG | - | chr4_1:78943027-78943046 | Msa0575170:intron | 25.0% |
| ! | TGAATAGATAACAACGAAAA+AGG | + | chr4_1:78943123-78943142 | None:intergenic | 25.0% |
| ! | ACATTGTTCTCATCTTATAT+GGG | - | chr4_1:78943621-78943640 | Msa0575170:intron | 25.0% |
| !!! | TGTGTTTTCTAGAGTATTTT+CGG | + | chr4_1:78943889-78943908 | None:intergenic | 25.0% |
| !! | ATACTCTAGAAAACACATAA+TGG | - | chr4_1:78943892-78943911 | Msa0575170:CDS | 25.0% |
| !! | TGCTCTGAATAAAATATGAA+AGG | + | chr4_1:78944094-78944113 | None:intergenic | 25.0% |
| !! | TTTATTCAGAGCAACATTTT+TGG | - | chr4_1:78944101-78944120 | Msa0575170:CDS | 25.0% |
| ! | CCATTGAAATTGGAAAAATT+AGG | + | chr4_1:78944305-78944324 | None:intergenic | 25.0% |
| !! | CCTAATTTTTCCAATTTCAA+TGG | - | chr4_1:78944302-78944321 | Msa0575170:intron | 25.0% |
| ! | ATATGTGTATCCATTGAAAT+TGG | + | chr4_1:78944315-78944334 | None:intergenic | 25.0% |
| ! | GATTATTATGTTGTCGAATT+TGG | - | chr4_1:78944644-78944663 | Msa0575170:intron | 25.0% |
| ! | AAATCGGTTAAATTTCATCA+CGG | + | chr4_1:78944709-78944728 | None:intergenic | 25.0% |
| ! | ACAAATGTTGAAATCAGATA+AGG | + | chr4_1:78944750-78944769 | None:intergenic | 25.0% |
| ! | AAAGACTACAAATTTGGATT+TGG | - | chr4_1:78945046-78945065 | Msa0575170:intron | 25.0% |
| ! | ACAAATCACCAAATTATTCA+AGG | + | chr4_1:78945457-78945476 | None:intergenic | 25.0% |
| !!! | TTGGTGATTTGTTTATGATT+TGG | - | chr4_1:78945465-78945484 | Msa0575170:five_prime_UTR | 25.0% |
| !!! | TGATTTGTTTATGATTTGGT+GGG | - | chr4_1:78945469-78945488 | Msa0575170:five_prime_UTR | 25.0% |
| AAAAACCGAAAGAGAAAGTA+AGG | + | chr4_1:78938959-78938978 | None:intergenic | 30.0% | |
| ! | GAACTTGAATCTTTGTTTGT+AGG | - | chr4_1:78938994-78939013 | Msa0575170:three_prime_UTR | 30.0% |
| TAACTTCATTGATCATCCTA+AGG | - | chr4_1:78939147-78939166 | Msa0575170:intron | 30.0% | |
| AAACTAAAAAGGAAGAAGGA+AGG | + | chr4_1:78939177-78939196 | None:intergenic | 30.0% | |
| !! | ATTGAAATTGTGTTTGGTGT+CGG | + | chr4_1:78939346-78939365 | None:intergenic | 30.0% |
| ATTTCAATCAGAAATGTTGG+TGG | - | chr4_1:78939358-78939377 | Msa0575170:intron | 30.0% | |
| ATGCATTATACCAGTAATGT+TGG | - | chr4_1:78939397-78939416 | Msa0575170:intron | 30.0% | |
| ! | CTTCTAATTGAAAGTGTGTT+TGG | + | chr4_1:78939443-78939462 | None:intergenic | 30.0% |
| AATAATGCATTCTTTGACCA+TGG | - | chr4_1:78939492-78939511 | Msa0575170:intron | 30.0% | |
| CTAATCAAGGAAATAGAAAC+AGG | + | chr4_1:78939692-78939711 | None:intergenic | 30.0% | |
| ! | GATACATTGGTAACTAATCA+AGG | + | chr4_1:78939705-78939724 | None:intergenic | 30.0% |
| AAAGGATAATTTATCTGCCA+TGG | - | chr4_1:78939816-78939835 | Msa0575170:intron | 30.0% | |
| TAAATTGAGTGATCATTCCA+TGG | + | chr4_1:78939836-78939855 | None:intergenic | 30.0% | |
| AAGACTACGAATAAGAAAAG+GGG | + | chr4_1:78939898-78939917 | None:intergenic | 30.0% | |
| TGAAGCTATGGTGAATAAAA+AGG | + | chr4_1:78939931-78939950 | None:intergenic | 30.0% | |
| GGCAAAAAAATATGAAGCTA+TGG | + | chr4_1:78939943-78939962 | None:intergenic | 30.0% | |
| ATATGTCAACTAGAAGATGA+GGG | + | chr4_1:78940064-78940083 | None:intergenic | 30.0% | |
| TATATGTCAACTAGAAGATG+AGG | + | chr4_1:78940065-78940084 | None:intergenic | 30.0% | |
| TTACAGAACACAGTTTCAAA+TGG | - | chr4_1:78940191-78940210 | Msa0575170:intron | 30.0% | |
| TACAGAACACAGTTTCAAAT+GGG | - | chr4_1:78940192-78940211 | Msa0575170:intron | 30.0% | |
| ! | AAAGATGGATATTTCTACTC+AGG | - | chr4_1:78940401-78940420 | Msa0575170:intron | 30.0% |
| ! | AAGATGGATATTTCTACTCA+GGG | - | chr4_1:78940402-78940421 | Msa0575170:intron | 30.0% |
| AAATACTTAAGGTGAGTGTA+CGG | - | chr4_1:78940463-78940482 | Msa0575170:intron | 30.0% | |
| AACTTCTTGTGGAAAAAACA+GGG | - | chr4_1:78940781-78940800 | Msa0575170:intron | 30.0% | |
| ATATATCGGGTATATATACG+TGG | - | chr4_1:78940898-78940917 | Msa0575170:intron | 30.0% | |
| AAGCATGAGCACTTATTAAA+TGG | + | chr4_1:78940937-78940956 | None:intergenic | 30.0% | |
| CGGATTATATATTACTCCAA+AGG | - | chr4_1:78941192-78941211 | Msa0575170:intron | 30.0% | |
| ! | TGTTACAAAAATTTAGGGTG+AGG | + | chr4_1:78941365-78941384 | None:intergenic | 30.0% |
| AATTTATGGACTTGTCTATG+CGG | - | chr4_1:78941414-78941433 | Msa0575170:intron | 30.0% | |
| ACCTGAAAAAATTAAGCTGA+TGG | + | chr4_1:78941440-78941459 | None:intergenic | 30.0% | |
| GATAGTAATAAGTATGCATG+GGG | + | chr4_1:78941486-78941505 | None:intergenic | 30.0% | |
| CAGATAGTAATAAGTATGCA+TGG | + | chr4_1:78941488-78941507 | None:intergenic | 30.0% | |
| GACAATAATTTAGAGACAGA+GGG | + | chr4_1:78941559-78941578 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr4_1:78941661-78941680 | Msa0575170:intron | 30.0% | |
| AAGAGACTATTATTGTGAGA+CGG | - | chr4_1:78941798-78941817 | Msa0575170:intron | 30.0% | |
| GGAGTAATATGAATAACTGA+TGG | - | chr4_1:78941823-78941842 | Msa0575170:intron | 30.0% | |
| ! | ATGGTAGTATTGAAGATCAT+TGG | - | chr4_1:78941842-78941861 | Msa0575170:intron | 30.0% |
| !! | TATCTATTTCAGGTCTGTTT+TGG | - | chr4_1:78941981-78942000 | Msa0575170:intron | 30.0% |
| ATTGACATGTTCAGGATTAA+GGG | + | chr4_1:78942050-78942069 | None:intergenic | 30.0% | |
| !! | CATGGTTTGGTACAATTTAT+GGG | - | chr4_1:78942085-78942104 | Msa0575170:intron | 30.0% |
| ! | ATAAATGATTTGTCACACTC+TGG | + | chr4_1:78942156-78942175 | None:intergenic | 30.0% |
| TGTGACAAATCATTTATCGT+TGG | - | chr4_1:78942159-78942178 | Msa0575170:intron | 30.0% | |
| GTGACAAATCATTTATCGTT+GGG | - | chr4_1:78942160-78942179 | Msa0575170:intron | 30.0% | |
| ACATTAGATGTATAAGCAGA+GGG | + | chr4_1:78942315-78942334 | None:intergenic | 30.0% | |
| GTAAAGCAGTACAATAGTAT+TGG | + | chr4_1:78942410-78942429 | None:intergenic | 30.0% | |
| GGAAAGACAAAACTTGAAAT+TGG | + | chr4_1:78942436-78942455 | None:intergenic | 30.0% | |
| ! | TTTTGTCTTTCCAATATTCC+TGG | - | chr4_1:78942444-78942463 | Msa0575170:intron | 30.0% |
| !! | TAGTTTTACTCCAGGAATAT+TGG | + | chr4_1:78942457-78942476 | None:intergenic | 30.0% |
| GTCAATGGAGGAATATATAA+GGG | + | chr4_1:78942661-78942680 | None:intergenic | 30.0% | |
| CTAATAGTTACAGCTATAGA+AGG | + | chr4_1:78942748-78942767 | None:intergenic | 30.0% | |
| CTTGTTGGAATAAATACTCA+AGG | - | chr4_1:78943026-78943045 | Msa0575170:intron | 30.0% | |
| TGTTGGAATAAATACTCAAG+GGG | - | chr4_1:78943028-78943047 | Msa0575170:intron | 30.0% | |
| ATCATTAATGCTAGCACTAT+TGG | - | chr4_1:78943052-78943071 | Msa0575170:intron | 30.0% | |
| TCATTAATGCTAGCACTATT+GGG | - | chr4_1:78943053-78943072 | Msa0575170:intron | 30.0% | |
| ACAAATCTACAATGTGATGA+TGG | + | chr4_1:78943276-78943295 | None:intergenic | 30.0% | |
| TTCTTCTATGAATTTAGCCA+CGG | - | chr4_1:78943434-78943453 | Msa0575170:intron | 30.0% | |
| TGGAGTTTCATACTCAATTA+GGG | + | chr4_1:78943602-78943621 | None:intergenic | 30.0% | |
| CATATAAGATGAGAACAATG+TGG | + | chr4_1:78943622-78943641 | None:intergenic | 30.0% | |
| CACATTGTTCTCATCTTATA+TGG | - | chr4_1:78943620-78943639 | Msa0575170:intron | 30.0% | |
| !!! | TAGTTGCATTTTCAAGTTTC+AGG | - | chr4_1:78943724-78943743 | Msa0575170:intron | 30.0% |
| TAATCACGTTCATTAGATTG+AGG | + | chr4_1:78943766-78943785 | None:intergenic | 30.0% | |
| ACGTGATTATAATACCATCA+AGG | - | chr4_1:78943777-78943796 | Msa0575170:intron | 30.0% | |
| GCATAAAATGTATATCTCAC+AGG | - | chr4_1:78943997-78944016 | Msa0575170:intron | 30.0% | |
| ! | GTTGCTAATTTTTACTGTAG+AGG | - | chr4_1:78944034-78944053 | Msa0575170:intron | 30.0% |
| GCAACTTTCAAAAAACACTA+TGG | + | chr4_1:78944191-78944210 | None:intergenic | 30.0% | |
| TTTCAATGGATACACATATC+TGG | - | chr4_1:78944316-78944335 | Msa0575170:intron | 30.0% | |
| TCTGCAATATCAATTTACAG+CGG | - | chr4_1:78944473-78944492 | Msa0575170:intron | 30.0% | |
| GACTTTCCCTTTAACTAAAA+AGG | - | chr4_1:78944547-78944566 | Msa0575170:CDS | 30.0% | |
| !!! | AGGGTTCCTTTTTAGTTAAA+GGG | + | chr4_1:78944556-78944575 | None:intergenic | 30.0% |
| !!! | AAGGGTTCCTTTTTAGTTAA+AGG | + | chr4_1:78944557-78944576 | None:intergenic | 30.0% |
| TATGTTGTCGAATTTGGATT+AGG | - | chr4_1:78944650-78944669 | Msa0575170:intron | 30.0% | |
| ATGTTGTCGAATTTGGATTA+GGG | - | chr4_1:78944651-78944670 | Msa0575170:intron | 30.0% | |
| AATGTTGAAATCAGATAAGG+CGG | + | chr4_1:78944747-78944766 | None:intergenic | 30.0% | |
| TCTGATTTCAACATTTGTGA+TGG | - | chr4_1:78944752-78944771 | Msa0575170:intron | 30.0% | |
| ! | AGCTCTAATTTATTCTCCAA+CGG | + | chr4_1:78945077-78945096 | None:intergenic | 30.0% |
| ! | TCTTGCTTCTTTTTACTTGT+TGG | - | chr4_1:78945148-78945167 | Msa0575170:intron | 30.0% |
| ! | CTTGCTTCTTTTTACTTGTT+GGG | - | chr4_1:78945149-78945168 | Msa0575170:intron | 30.0% |
| TGAAAAGAAGAAAACAAAGG+AGG | - | chr4_1:78945184-78945203 | Msa0575170:CDS | 30.0% | |
| GAGGAATATATCATTTGTGT+CGG | - | chr4_1:78945203-78945222 | Msa0575170:CDS | 30.0% | |
| CTTGATGTCCTTGAATAATT+TGG | - | chr4_1:78945446-78945465 | Msa0575170:exon | 30.0% | |
| !! | GTGATTTGTTTATGATTTGG+TGG | - | chr4_1:78945468-78945487 | Msa0575170:five_prime_UTR | 30.0% |
| TCACAAGCATAGCATACTTT+GGG | - | chr4_1:78938561-78938580 | Msa0575170:three_prime_UTR | 35.0% | |
| ! | AAAACCCTTGTTTGTTTCGT+TGG | + | chr4_1:78938593-78938612 | None:intergenic | 35.0% |
| ! | TTGAAGCCTGAACTTTTTGA+AGG | - | chr4_1:78938876-78938895 | Msa0575170:three_prime_UTR | 35.0% |
| !! | GAACTTCTGGTTAAGCATTT+TGG | + | chr4_1:78938919-78938938 | None:intergenic | 35.0% |
| TGTGATTAAGAGAGAACTTC+TGG | + | chr4_1:78938932-78938951 | None:intergenic | 35.0% | |
| AGAAGTTCTCTCTTAATCAC+AGG | - | chr4_1:78938931-78938950 | Msa0575170:three_prime_UTR | 35.0% | |
| AGGTACCTTACTTTCTCTTT+CGG | - | chr4_1:78938951-78938970 | Msa0575170:three_prime_UTR | 35.0% | |
| TTTGATACTCAGTGTTTCGA+TGG | - | chr4_1:78939054-78939073 | Msa0575170:CDS | 35.0% | |
| TTGATACTCAGTGTTTCGAT+GGG | - | chr4_1:78939055-78939074 | Msa0575170:CDS | 35.0% | |
| CCAAATTCATAGTTAGCAGT+TGG | + | chr4_1:78939124-78939143 | None:intergenic | 35.0% | |
| CCAACTGCTAACTATGAATT+TGG | - | chr4_1:78939121-78939140 | Msa0575170:intron | 35.0% | |
| !!! | TAGAAGTGTCGATTTTATGG+AGG | - | chr4_1:78939457-78939476 | Msa0575170:intron | 35.0% |
| !!! | TGTTTTGTAGCTGTTGCTTT+TGG | - | chr4_1:78939518-78939537 | Msa0575170:intron | 35.0% |
| !!! | GTTTTGTAGCTGTTGCTTTT+GGG | - | chr4_1:78939519-78939538 | Msa0575170:intron | 35.0% |
| !!! | TTTTGTAGCTGTTGCTTTTG+GGG | - | chr4_1:78939520-78939539 | Msa0575170:intron | 35.0% |
| !! | TTGATAGTGGTATGAGAGTA+TGG | - | chr4_1:78939738-78939757 | Msa0575170:intron | 35.0% |
| ! | TTACTTATTGGTGGCTGAAA+AGG | - | chr4_1:78939798-78939817 | Msa0575170:intron | 35.0% |
| TACGAATAAGAAAAGGGGAA+GGG | + | chr4_1:78939893-78939912 | None:intergenic | 35.0% | |
| ! | CTCACTTGTTAGCTGTAAAA+AGG | + | chr4_1:78939964-78939983 | None:intergenic | 35.0% |
| GACAATATGCATGCATAATC+AGG | + | chr4_1:78940118-78940137 | None:intergenic | 35.0% | |
| ACAGAACACAGTTTCAAATG+GGG | - | chr4_1:78940193-78940212 | Msa0575170:intron | 35.0% | |
| GGCAAGTTATATTCAGGTAA+TGG | - | chr4_1:78940233-78940252 | Msa0575170:intron | 35.0% | |
| TAAAGTTGTTGTCACGTGAT+AGG | - | chr4_1:78940735-78940754 | Msa0575170:CDS | 35.0% | |
| ! | TAGGTCATGAGTTCAAGTTA+TGG | - | chr4_1:78940754-78940773 | Msa0575170:intron | 35.0% |
| GTTATGGAAACAACTTCTTG+TGG | - | chr4_1:78940770-78940789 | Msa0575170:intron | 35.0% | |
| CAACTTCTTGTGGAAAAAAC+AGG | - | chr4_1:78940780-78940799 | Msa0575170:intron | 35.0% | |
| CAGTGCTATGCATATGTATA+TGG | - | chr4_1:78940991-78941010 | Msa0575170:intron | 35.0% | |
| AGTAGTTTGGCCAATATTTG+AGG | - | chr4_1:78941090-78941109 | Msa0575170:intron | 35.0% | |
| TGGTCTAGTGGTTAAAAAAC+AGG | - | chr4_1:78941217-78941236 | Msa0575170:intron | 35.0% | |
| AGTGGTTAAAAAACAGGTCT+TGG | - | chr4_1:78941223-78941242 | Msa0575170:intron | 35.0% | |
| TAAAAAACAGGTCTTGGATC+CGG | - | chr4_1:78941229-78941248 | Msa0575170:intron | 35.0% | |
| ! | AAAAATTTAGGGTGAGGAGA+TGG | + | chr4_1:78941359-78941378 | None:intergenic | 35.0% |
| !!! | GCCATCAGCTTAATTTTTTC+AGG | - | chr4_1:78941436-78941455 | Msa0575170:intron | 35.0% |
| CGACAATAATTTAGAGACAG+AGG | + | chr4_1:78941560-78941579 | None:intergenic | 35.0% | |
| ! | GAGATACATTCCGTTTGTTA+TGG | - | chr4_1:78941894-78941913 | Msa0575170:CDS | 35.0% |
| GATTGACATGTTCAGGATTA+AGG | + | chr4_1:78942051-78942070 | None:intergenic | 35.0% | |
| TTGGATTGATTGACATGTTC+AGG | + | chr4_1:78942058-78942077 | None:intergenic | 35.0% | |
| !! | GCATGGTTTGGTACAATTTA+TGG | - | chr4_1:78942084-78942103 | Msa0575170:intron | 35.0% |
| ACAAATCATTTATCGTTGGG+TGG | - | chr4_1:78942163-78942182 | Msa0575170:intron | 35.0% | |
| TCGCTACAACACTGATAAAA+TGG | - | chr4_1:78942237-78942256 | Msa0575170:intron | 35.0% | |
| GACATTAGATGTATAAGCAG+AGG | + | chr4_1:78942316-78942335 | None:intergenic | 35.0% | |
| AGACAAAACTTGAAATTGGC+TGG | + | chr4_1:78942432-78942451 | None:intergenic | 35.0% | |
| !! | GTACATTGTAGTTTTACTCC+AGG | + | chr4_1:78942465-78942484 | None:intergenic | 35.0% |
| TATTAAATACCATGCGGGTA+TGG | - | chr4_1:78942493-78942512 | Msa0575170:intron | 35.0% | |
| ATCTATATTCCCACAATTCG+TGG | + | chr4_1:78942627-78942646 | None:intergenic | 35.0% | |
| GGTCAATGGAGGAATATATA+AGG | + | chr4_1:78942662-78942681 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTAGCTGTCGTTTT+TGG | - | chr4_1:78942893-78942912 | Msa0575170:intron | 35.0% |
| !!! | CCTTTTTAGCTGTCGTTTTT+GGG | - | chr4_1:78942894-78942913 | Msa0575170:intron | 35.0% |
| ! | TCTTTTGAGCTATGTTCAGA+AGG | - | chr4_1:78943233-78943252 | Msa0575170:intron | 35.0% |
| AAGAAAAAACTACCTGTCTG+AGG | + | chr4_1:78943419-78943438 | None:intergenic | 35.0% | |
| AGACATAATTGAGCCTTGAA+CGG | - | chr4_1:78943501-78943520 | Msa0575170:intron | 35.0% | |
| GTGGAGTTTCATACTCAATT+AGG | + | chr4_1:78943603-78943622 | None:intergenic | 35.0% | |
| !!! | TGTATGTGTGCTGTTTGTTT+TGG | - | chr4_1:78943837-78943856 | Msa0575170:intron | 35.0% |
| ! | TTTTCGGCATCCAAATCATT+GGG | + | chr4_1:78943873-78943892 | None:intergenic | 35.0% |
| ! | ATTTTCGGCATCCAAATCAT+TGG | + | chr4_1:78943874-78943893 | None:intergenic | 35.0% |
| GAAGTTGGACACAAAAACTA+GGG | + | chr4_1:78943966-78943985 | None:intergenic | 35.0% | |
| AGAAGTTGGACACAAAAACT+AGG | + | chr4_1:78943967-78943986 | None:intergenic | 35.0% | |
| ATGCTAAAAAGGTGAGAAGT+TGG | + | chr4_1:78943981-78944000 | None:intergenic | 35.0% | |
| !! | TTTTGGCTGTCTTCTCTATT+TGG | - | chr4_1:78944118-78944137 | Msa0575170:CDS | 35.0% |
| CACGGTAAGCAAAGTTTAAA+TGG | + | chr4_1:78944691-78944710 | None:intergenic | 35.0% | |
| ! | AGATAAGGCGGCTTTTAAAT+TGG | + | chr4_1:78944735-78944754 | None:intergenic | 35.0% |
| !! | TTATTTTATAGTGCCGCCTT+AGG | - | chr4_1:78944775-78944794 | Msa0575170:intron | 35.0% |
| ! | TATTTTATAGTGCCGCCTTA+GGG | - | chr4_1:78944776-78944795 | Msa0575170:intron | 35.0% |
| GAATTTCATTCTTTCTGCAG+AGG | - | chr4_1:78944860-78944879 | Msa0575170:intron | 35.0% | |
| TATGAAAATCATGTCAAGGC+AGG | + | chr4_1:78944997-78945016 | None:intergenic | 35.0% | |
| GTTGGAGAATAAATTAGAGC+TGG | - | chr4_1:78945076-78945095 | Msa0575170:intron | 35.0% | |
| AAGAAGCAAGAAAACTTGCA+AGG | + | chr4_1:78945139-78945158 | None:intergenic | 35.0% | |
| AGTATTGTTGGGTCAATTTG+TGG | + | chr4_1:78945246-78945265 | None:intergenic | 35.0% | |
| GTCACAAGCATAGCATACTT+TGG | - | chr4_1:78938560-78938579 | Msa0575170:three_prime_UTR | 40.0% | |
| ACGAACCAACGAAACAAACA+AGG | - | chr4_1:78938585-78938604 | Msa0575170:three_prime_UTR | 40.0% | |
| CGAACCAACGAAACAAACAA+GGG | - | chr4_1:78938586-78938605 | Msa0575170:three_prime_UTR | 40.0% | |
| CTCTCTCTGATCTCTAACAA+TGG | - | chr4_1:78938637-78938656 | Msa0575170:three_prime_UTR | 40.0% | |
| ATCTCTAACAATGGCGACTA+TGG | - | chr4_1:78938646-78938665 | Msa0575170:three_prime_UTR | 40.0% | |
| TGAAGTTCTTCGAAGGGAAT+GGG | + | chr4_1:78938740-78938759 | None:intergenic | 40.0% | |
| ATGAAGTTCTTCGAAGGGAA+TGG | + | chr4_1:78938741-78938760 | None:intergenic | 40.0% | |
| ! | GAAGAAGGAAGGTATACCTT+AGG | + | chr4_1:78939166-78939185 | None:intergenic | 40.0% |
| CAACGACGCATGTAACTATA+TGG | + | chr4_1:78939275-78939294 | None:intergenic | 40.0% | |
| ACAGCTACAAAACATCACCA+TGG | + | chr4_1:78939512-78939531 | None:intergenic | 40.0% | |
| ACGAATAAGAAAAGGGGAAG+GGG | + | chr4_1:78939892-78939911 | None:intergenic | 40.0% | |
| CTACGAATAAGAAAAGGGGA+AGG | + | chr4_1:78939894-78939913 | None:intergenic | 40.0% | |
| ACACAGTTTCAAATGGGGAA+TGG | - | chr4_1:78940198-78940217 | Msa0575170:intron | 40.0% | |
| ! | AATATAACTTGCCCCTAGCA+AGG | + | chr4_1:78940226-78940245 | None:intergenic | 40.0% |
| ! | TGGATATTTCTACTCAGGGA+TGG | - | chr4_1:78940406-78940425 | Msa0575170:intron | 40.0% |
| ATTTCTACTCAGGGATGGTA+AGG | - | chr4_1:78940411-78940430 | Msa0575170:intron | 40.0% | |
| ATTATATCAAGGGGGAACCT+TGG | - | chr4_1:78940704-78940723 | Msa0575170:CDS | 40.0% | |
| CTAAAATTCCCGCATTCGTA+GGG | + | chr4_1:78940852-78940871 | None:intergenic | 40.0% | |
| ACTAAAATTCCCGCATTCGT+AGG | + | chr4_1:78940853-78940872 | None:intergenic | 40.0% | |
| ! | TTTGGCCAATATTTGAGGTC+AGG | - | chr4_1:78941095-78941114 | Msa0575170:intron | 40.0% |
| TAACCACTAGACCAAACCTT+TGG | + | chr4_1:78941211-78941230 | None:intergenic | 40.0% | |
| ! | TAACTTCTCTCTAAAGGCAC+TGG | + | chr4_1:78941276-78941295 | None:intergenic | 40.0% |
| ! | GGACTTAGAGCACTTACAAA+GGG | + | chr4_1:78941307-78941326 | None:intergenic | 40.0% |
| ! | AGGACTTAGAGCACTTACAA+AGG | + | chr4_1:78941308-78941327 | None:intergenic | 40.0% |
| ! | TGTAAGTGCTCTAAGTCCTA+AGG | - | chr4_1:78941309-78941328 | Msa0575170:intron | 40.0% |
| ! | TGTCGTTTAAGGTTTGTGCA+CGG | - | chr4_1:78941575-78941594 | Msa0575170:intron | 40.0% |
| AGGTTTGTGCACGGTTATTA+AGG | - | chr4_1:78941584-78941603 | Msa0575170:intron | 40.0% | |
| AGACTATTATTGTGAGACGG+AGG | - | chr4_1:78941801-78941820 | Msa0575170:intron | 40.0% | |
| GACTATTATTGTGAGACGGA+GGG | - | chr4_1:78941802-78941821 | Msa0575170:intron | 40.0% | |
| AATCAATCCAATCTGCTGCA+TGG | - | chr4_1:78942067-78942086 | Msa0575170:intron | 40.0% | |
| GACAGCTAAAAAGGAACAGA+GGG | + | chr4_1:78942888-78942907 | None:intergenic | 40.0% | |
| CCCAAAAACGACAGCTAAAA+AGG | + | chr4_1:78942897-78942916 | None:intergenic | 40.0% | |
| CAAATTGATCATCTGCATCC+AGG | - | chr4_1:78943176-78943195 | Msa0575170:intron | 40.0% | |
| ! | TGTTCAGAAGGTTTCTGAGA+AGG | - | chr4_1:78943245-78943264 | Msa0575170:intron | 40.0% |
| TTATGACTACATCCTCAGAC+AGG | - | chr4_1:78943404-78943423 | Msa0575170:intron | 40.0% | |
| ! | TCATGTCGTACTATTTTCCG+TGG | + | chr4_1:78943454-78943473 | None:intergenic | 40.0% |
| ACGACATGAATGTGAATGTG+TGG | - | chr4_1:78943465-78943484 | Msa0575170:intron | 40.0% | |
| GACATAATTGAGCCTTGAAC+GGG | - | chr4_1:78943502-78943521 | Msa0575170:intron | 40.0% | |
| CTCATCTTATATGGGTGCAT+CGG | - | chr4_1:78943629-78943648 | Msa0575170:intron | 40.0% | |
| TTTCGGCATCCAAATCATTG+GGG | + | chr4_1:78943872-78943891 | None:intergenic | 40.0% | |
| TCTCACAGGCTGTATTTCTT+TGG | - | chr4_1:78944011-78944030 | Msa0575170:intron | 40.0% | |
| CTCACAGGCTGTATTTCTTT+GGG | - | chr4_1:78944012-78944031 | Msa0575170:intron | 40.0% | |
| TTCAATGAAAGCCAGAGCAA+TGG | - | chr4_1:78944277-78944296 | Msa0575170:intron | 40.0% | |
| AAAATTAGGGTCCATTGCTC+TGG | + | chr4_1:78944291-78944310 | None:intergenic | 40.0% | |
| TTGTTTCCTCTACTAGAACC+AGG | - | chr4_1:78944354-78944373 | Msa0575170:intron | 40.0% | |
| TGTTTCCTCTACTAGAACCA+GGG | - | chr4_1:78944355-78944374 | Msa0575170:intron | 40.0% | |
| AGTGATGCTTTGTCTTTCCT+TGG | - | chr4_1:78944378-78944397 | Msa0575170:intron | 40.0% | |
| ! | TTGTCGAATTTGGATTAGGG+AGG | - | chr4_1:78944654-78944673 | Msa0575170:intron | 40.0% |
| AGCAAAGTTTAAATGGCCAC+CGG | + | chr4_1:78944684-78944703 | None:intergenic | 40.0% | |
| ! | ATTTTATAGTGCCGCCTTAG+GGG | - | chr4_1:78944777-78944796 | Msa0575170:intron | 40.0% |
| TTTGGAGGAGAGGTTAAACA+TGG | - | chr4_1:78944833-78944852 | Msa0575170:intron | 40.0% | |
| TTGGAGGAGAGGTTAAACAT+GGG | - | chr4_1:78944834-78944853 | Msa0575170:intron | 40.0% | |
| !! | TTTGGATTTGGTTTGACCGT+TGG | - | chr4_1:78945058-78945077 | Msa0575170:intron | 40.0% |
| CTGATCGACCTTCTTATCGT+CGG | + | chr4_1:78938690-78938709 | None:intergenic | 45.0% | |
| TCGCGATGAAGTTCTTCGAA+GGG | + | chr4_1:78938746-78938765 | None:intergenic | 45.0% | |
| TTCGCGATGAAGTTCTTCGA+AGG | + | chr4_1:78938747-78938766 | None:intergenic | 45.0% | |
| CGCATGCCTTCAAAAAGTTC+AGG | + | chr4_1:78938885-78938904 | None:intergenic | 45.0% | |
| GACTGAGAAGGAATCTCAGT+AGG | + | chr4_1:78939082-78939101 | None:intergenic | 45.0% | |
| ATAACCTCAGCAGACTGAGA+AGG | + | chr4_1:78939094-78939113 | None:intergenic | 45.0% | |
| ACAAAGCACAGCACTAACAC+TGG | - | chr4_1:78939210-78939229 | Msa0575170:intron | 45.0% | |
| !! | CAGAAATGTTGGTGGTAGAG+AGG | - | chr4_1:78939366-78939385 | Msa0575170:intron | 45.0% |
| GTGTCAGTCTCCAACATTAC+TGG | + | chr4_1:78939410-78939429 | None:intergenic | 45.0% | |
| TGTTGGAGACTGACACATGT+CGG | - | chr4_1:78939414-78939433 | Msa0575170:intron | 45.0% | |
| GAGAGCTATGACTGATGGAA+GGG | - | chr4_1:78939542-78939561 | Msa0575170:intron | 45.0% | |
| ! | CACTTTGAAAGCCAATGCTC+AGG | - | chr4_1:78939602-78939621 | Msa0575170:intron | 45.0% |
| ATCATCCCTTGCGACATATG+TGG | + | chr4_1:78939987-78940006 | None:intergenic | 45.0% | |
| GCTAGGGGCAAGTTATATTC+AGG | - | chr4_1:78940227-78940246 | Msa0575170:intron | 45.0% | |
| TACGGCGATAAAACACACGA+GGG | - | chr4_1:78940481-78940500 | Msa0575170:intron | 45.0% | |
| !! | ATGCGGGAATTTTAGTGCAC+TGG | - | chr4_1:78940857-78940876 | Msa0575170:CDS | 45.0% |
| !! | TGCGGGAATTTTAGTGCACT+GGG | - | chr4_1:78940858-78940877 | Msa0575170:CDS | 45.0% |
| CCACACCTGACCTCAAATAT+TGG | + | chr4_1:78941103-78941122 | None:intergenic | 45.0% | |
| ! | CCAATATTTGAGGTCAGGTG+TGG | - | chr4_1:78941100-78941119 | Msa0575170:intron | 45.0% |
| ! | ACTCCAAAGGTTTGGTCTAG+TGG | - | chr4_1:78941205-78941224 | Msa0575170:intron | 45.0% |
| !! | TTCTCTCTAAAGGCACTGGT+GGG | + | chr4_1:78941272-78941291 | None:intergenic | 45.0% |
| ATCCAATCTGCTGCATGGTT+TGG | - | chr4_1:78942072-78942091 | Msa0575170:intron | 45.0% | |
| TACCAAACCATGCAGCAGAT+TGG | + | chr4_1:78942077-78942096 | None:intergenic | 45.0% | |
| TCATTTATCGTTGGGTGGAG+AGG | - | chr4_1:78942168-78942187 | Msa0575170:intron | 45.0% | |
| !!! | GTTGGGTGGAGAGGTATTTT+GGG | - | chr4_1:78942177-78942196 | Msa0575170:intron | 45.0% |
| AAGCTGCAGATTGTGCATGT+AGG | + | chr4_1:78942284-78942303 | None:intergenic | 45.0% | |
| ATGTATAAGCAGAGGGAAGC+AGG | + | chr4_1:78942308-78942327 | None:intergenic | 45.0% | |
| ! | AAAAGCATACCATACCCGCA+TGG | + | chr4_1:78942505-78942524 | None:intergenic | 45.0% |
| CTCCATGTTCTACCCAGTAA+GGG | - | chr4_1:78942686-78942705 | Msa0575170:intron | 45.0% | |
| TCCATGTTCTACCCAGTAAG+GGG | - | chr4_1:78942687-78942706 | Msa0575170:intron | 45.0% | |
| CGACAGCTAAAAAGGAACAG+AGG | + | chr4_1:78942889-78942908 | None:intergenic | 45.0% | |
| CAAAAGAACCATTCCAGTGC+TGG | + | chr4_1:78943220-78943239 | None:intergenic | 45.0% | |
| TCACATGAAATGTTCCTCGC+AGG | - | chr4_1:78943320-78943339 | Msa0575170:intron | 45.0% | |
| TGAGCCTTGAACGGGATTAT+TGG | - | chr4_1:78943510-78943529 | Msa0575170:intron | 45.0% | |
| TGAGCCAATAATCCCGTTCA+AGG | + | chr4_1:78943517-78943536 | None:intergenic | 45.0% | |
| CAGTTAGAGTTGCTGTCATG+TGG | - | chr4_1:78943538-78943557 | Msa0575170:intron | 45.0% | |
| ATCTTATATGGGTGCATCGG+AGG | - | chr4_1:78943632-78943651 | Msa0575170:intron | 45.0% | |
| TCTTATATGGGTGCATCGGA+GGG | - | chr4_1:78943633-78943652 | Msa0575170:intron | 45.0% | |
| ! | ACTTGCTGCAATTGCAAGTG+TGG | - | chr4_1:78943658-78943677 | Msa0575170:intron | 45.0% |
| TAGATTGAGGTGACCAGCAA+GGG | + | chr4_1:78943753-78943772 | None:intergenic | 45.0% | |
| TTAGATTGAGGTGACCAGCA+AGG | + | chr4_1:78943754-78943773 | None:intergenic | 45.0% | |
| TTCGGCATCCAAATCATTGG+GGG | + | chr4_1:78943871-78943890 | None:intergenic | 45.0% | |
| ! | AAAGACAAAGCATCACTCCC+TGG | + | chr4_1:78944375-78944394 | None:intergenic | 45.0% |
| GATGCTTTGTCTTTCCTTGG+CGG | - | chr4_1:78944381-78944400 | Msa0575170:intron | 45.0% | |
| GATCCTAGTCAGCTTTCGAA+GGG | + | chr4_1:78944575-78944594 | None:intergenic | 45.0% | |
| TGATCCTAGTCAGCTTTCGA+AGG | + | chr4_1:78944576-78944595 | None:intergenic | 45.0% | |
| ! | TCCTGTGTTACTGACATGAG+AGG | - | chr4_1:78944614-78944633 | Msa0575170:intron | 45.0% |
| ACCTCTCATGTCAGTAACAC+AGG | + | chr4_1:78944618-78944637 | None:intergenic | 45.0% | |
| ! | TTTGGATTAGGGAGGTCATC+CGG | - | chr4_1:78944662-78944681 | Msa0575170:intron | 45.0% |
| AATCAACCTTTCCCCTAAGG+CGG | + | chr4_1:78944791-78944810 | None:intergenic | 45.0% | |
| TGGAATCAACCTTTCCCCTA+AGG | + | chr4_1:78944794-78944813 | None:intergenic | 45.0% | |
| ! | AGGGGAAAGGTTGATTCCAA+TGG | - | chr4_1:78944795-78944814 | Msa0575170:intron | 45.0% |
| AAAAGCAGCGCAAACACCAT+TGG | + | chr4_1:78944814-78944833 | None:intergenic | 45.0% | |
| !!! | TGGTGTTTGCGCTGCTTTTT+TGG | - | chr4_1:78944815-78944834 | Msa0575170:intron | 45.0% |
| !!! | TGTTTGCGCTGCTTTTTTGG+AGG | - | chr4_1:78944818-78944837 | Msa0575170:intron | 45.0% |
| GTTGTTAGGGTGTGTGTGTT+TGG | - | chr4_1:78944912-78944931 | Msa0575170:intron | 45.0% | |
| ! | GCTAGTCTGGCTAAAGGAAA+TGG | + | chr4_1:78945117-78945136 | None:intergenic | 45.0% |
| ! | GAAAACTTGCAAGGCTAGTC+TGG | + | chr4_1:78945130-78945149 | None:intergenic | 45.0% |
| !! | TATATGTAAATATAAATTTA+TGG | - | chr4_1:78941400-78941419 | Msa0575170:intron | 5.0% |
| !!! | CTATTTTAAAAATTTTAATT+GGG | - | chr4_1:78944432-78944451 | Msa0575170:intron | 5.0% |
| ATCGACCTTCTTATCGTCGG+CGG | + | chr4_1:78938687-78938706 | None:intergenic | 50.0% | |
| TCTTCGAAGGGAATGGGACA+AGG | + | chr4_1:78938734-78938753 | None:intergenic | 50.0% | |
| GATTCCTTCTCAGTCTGCTG+AGG | - | chr4_1:78939087-78939106 | Msa0575170:intron | 50.0% | |
| TTGGGGAGAGCTATGACTGA+TGG | - | chr4_1:78939537-78939556 | Msa0575170:intron | 50.0% | |
| GGAGAGCTATGACTGATGGA+AGG | - | chr4_1:78939541-78939560 | Msa0575170:intron | 50.0% | |
| AGTGAGCCACATATGTCGCA+AGG | - | chr4_1:78939978-78939997 | Msa0575170:intron | 50.0% | |
| GTGAGCCACATATGTCGCAA+GGG | - | chr4_1:78939979-78939998 | Msa0575170:intron | 50.0% | |
| ACTCAGGGATGGTAAGGTAC+AGG | - | chr4_1:78940417-78940436 | Msa0575170:intron | 50.0% | |
| GGGATGGTAAGGTACAGGTA+CGG | - | chr4_1:78940422-78940441 | Msa0575170:intron | 50.0% | |
| GGATGGTAAGGTACAGGTAC+GGG | - | chr4_1:78940423-78940442 | Msa0575170:intron | 50.0% | |
| GTACGGCGATAAAACACACG+AGG | - | chr4_1:78940480-78940499 | Msa0575170:intron | 50.0% | |
| ACAACTTTACCGTTGCGCCA+AGG | + | chr4_1:78940724-78940743 | None:intergenic | 50.0% | |
| CTTGTGGAAAAAACAGGGCG+AGG | - | chr4_1:78940786-78940805 | Msa0575170:intron | 50.0% | |
| CTGCGTACAACACACCGAAA+CGG | - | chr4_1:78940809-78940828 | Msa0575170:intron | 50.0% | |
| GTACAACACACCGAAACGGT+GGG | - | chr4_1:78940813-78940832 | Msa0575170:intron | 50.0% | |
| GTCTTGGATCCGGAAGTTCT+GGG | - | chr4_1:78941239-78941258 | Msa0575170:intron | 50.0% | |
| !! | TCTCTCTAAAGGCACTGGTG+GGG | + | chr4_1:78941271-78941290 | None:intergenic | 50.0% |
| !! | CTTCTCTCTAAAGGCACTGG+TGG | + | chr4_1:78941273-78941292 | None:intergenic | 50.0% |
| TCCTAAGGTCTTACCTGCCT+TGG | - | chr4_1:78941324-78941343 | Msa0575170:intron | 50.0% | |
| TCCAAGGCAGGTAAGACCTT+AGG | + | chr4_1:78941328-78941347 | None:intergenic | 50.0% | |
| !!! | CGTTGGGTGGAGAGGTATTT+TGG | - | chr4_1:78942176-78942195 | Msa0575170:intron | 50.0% |
| GAACATGGAGGTTGGGTCAA+TGG | + | chr4_1:78942676-78942695 | None:intergenic | 50.0% | |
| CTGGGTAGAACATGGAGGTT+GGG | + | chr4_1:78942683-78942702 | None:intergenic | 50.0% | |
| ACTGGGTAGAACATGGAGGT+TGG | + | chr4_1:78942684-78942703 | None:intergenic | 50.0% | |
| CCTTACTGGGTAGAACATGG+AGG | + | chr4_1:78942688-78942707 | None:intergenic | 50.0% | |
| CCTCCATGTTCTACCCAGTA+AGG | - | chr4_1:78942685-78942704 | Msa0575170:intron | 50.0% | |
| CCATGTTCTACCCAGTAAGG+GGG | - | chr4_1:78942688-78942707 | Msa0575170:intron | 50.0% | |
| TTCACCATCTCCCCCTTACT+GGG | + | chr4_1:78942701-78942720 | None:intergenic | 50.0% | |
| ! | ACAAGTTGCCAGCACTGGAA+TGG | - | chr4_1:78943209-78943228 | Msa0575170:intron | 50.0% |
| ! | AGAGACGTCACTGCTAGCTT+TGG | - | chr4_1:78943381-78943400 | Msa0575170:intron | 50.0% |
| AAGTTTCAGGACTCCCTTGC+TGG | - | chr4_1:78943737-78943756 | Msa0575170:intron | 50.0% | |
| CTCAACTCTGCAAGCCTTGA+TGG | + | chr4_1:78943794-78943813 | None:intergenic | 50.0% | |
| CACTGCATCCCCCAATGATT+TGG | - | chr4_1:78943860-78943879 | Msa0575170:intron | 50.0% | |
| !! | TCACTCCCTGGTTCTAGTAG+AGG | + | chr4_1:78944363-78944382 | None:intergenic | 50.0% |
| GAACCCTTCGAAAGCTGACT+AGG | - | chr4_1:78944569-78944588 | Msa0575170:intron | 50.0% | |
| !! | TGCAAGGCTAGTCTGGCTAA+AGG | + | chr4_1:78945123-78945142 | None:intergenic | 50.0% |
| ! | TCTTGCCCTGTTTTCCCTTG+AGG | - | chr4_1:78945284-78945303 | Msa0575170:intron | 50.0% |
| ! | CTTGCCCTGTTTTCCCTTGA+GGG | - | chr4_1:78945285-78945304 | Msa0575170:intron | 50.0% |
| ! | TTGCCCTGTTTTCCCTTGAG+GGG | - | chr4_1:78945286-78945305 | Msa0575170:intron | 50.0% |
| TTCCCCCTCAAGGGAAAACA+GGG | + | chr4_1:78945292-78945311 | None:intergenic | 50.0% | |
| TCTACATCCTTCCCCCTCAA+GGG | + | chr4_1:78945301-78945320 | None:intergenic | 50.0% | |
| TTATCGTCGGCGGTGGGAAT+CGG | + | chr4_1:78938677-78938696 | None:intergenic | 55.0% | |
| ACCTTCTTATCGTCGGCGGT+GGG | + | chr4_1:78938683-78938702 | None:intergenic | 55.0% | |
| GGGAATGGGACAAGGAAGGT+TGG | + | chr4_1:78938726-78938745 | None:intergenic | 55.0% | |
| CGAAGGGAATGGGACAAGGA+AGG | + | chr4_1:78938730-78938749 | None:intergenic | 55.0% | |
| ACACGCACACACCTGAGCAT+TGG | + | chr4_1:78939616-78939635 | None:intergenic | 55.0% | |
| ATGGGGAATGGAGCCTTGCT+AGG | - | chr4_1:78940210-78940229 | Msa0575170:intron | 55.0% | |
| TGGGGAATGGAGCCTTGCTA+GGG | - | chr4_1:78940211-78940230 | Msa0575170:intron | 55.0% | |
| CGTACAACACACCGAAACGG+TGG | - | chr4_1:78940812-78940831 | Msa0575170:intron | 55.0% | |
| CATTCGTAGGGTCCGAGAAG+GGG | + | chr4_1:78940840-78940859 | None:intergenic | 55.0% | |
| GCATTCGTAGGGTCCGAGAA+GGG | + | chr4_1:78940841-78940860 | None:intergenic | 55.0% | |
| CTTCTCGGACCCTACGAATG+CGG | - | chr4_1:78940840-78940859 | Msa0575170:intron | 55.0% | |
| TTCTCGGACCCTACGAATGC+GGG | - | chr4_1:78940841-78940860 | Msa0575170:intron | 55.0% | |
| GGTCTTGGATCCGGAAGTTC+TGG | - | chr4_1:78941238-78941257 | Msa0575170:intron | 55.0% | |
| GGGTTCGAACCCAGAACTTC+CGG | + | chr4_1:78941251-78941270 | None:intergenic | 55.0% | |
| AGGTCTTACCTGCCTTGGAC+TGG | - | chr4_1:78941329-78941348 | Msa0575170:intron | 55.0% | |
| GGTCTTACCTGCCTTGGACT+GGG | - | chr4_1:78941330-78941349 | Msa0575170:intron | 55.0% | |
| GTCTTACCTGCCTTGGACTG+GGG | - | chr4_1:78941331-78941350 | Msa0575170:intron | 55.0% | |
| !!! | GGTGGAGAGGTATTTTGGGC+TGG | - | chr4_1:78942181-78942200 | Msa0575170:intron | 55.0% |
| ! | GCTGGTCAGCATCGAAAGTC+CGG | - | chr4_1:78942199-78942218 | Msa0575170:intron | 55.0% |
| ! | CAGCATCGAAAGTCCGGTGT+AGG | - | chr4_1:78942205-78942224 | Msa0575170:intron | 55.0% |
| GCGAGCAGCATAACCTACAC+CGG | + | chr4_1:78942221-78942240 | None:intergenic | 55.0% | |
| CCTATAGCGCTGTCACGTTG+CGG | - | chr4_1:78942567-78942586 | Msa0575170:intron | 55.0% | |
| CATGGAGGTTGGGTCAATGG+AGG | + | chr4_1:78942673-78942692 | None:intergenic | 55.0% | |
| CCCCCTTACTGGGTAGAACA+TGG | + | chr4_1:78942691-78942710 | None:intergenic | 55.0% | |
| TCTACCCAGTAAGGGGGAGA+TGG | - | chr4_1:78942694-78942713 | Msa0575170:intron | 55.0% | |
| CTTCACCATCTCCCCCTTAC+TGG | + | chr4_1:78942702-78942721 | None:intergenic | 55.0% | |
| ATCTGCATCCAGGTTGCCAC+AGG | - | chr4_1:78943186-78943205 | Msa0575170:intron | 55.0% | |
| CAACTTGTCCTGTGGCAACC+TGG | + | chr4_1:78943197-78943216 | None:intergenic | 55.0% | |
| !! | AGTGCTGGCAACTTGTCCTG+TGG | + | chr4_1:78943205-78943224 | None:intergenic | 55.0% |
| ACAGGACAAGTTGCCAGCAC+TGG | - | chr4_1:78943204-78943223 | Msa0575170:intron | 55.0% | |
| AGCAGCTAGAGAAACCTGCG+AGG | + | chr4_1:78943337-78943356 | None:intergenic | 55.0% | |
| ATAGTGCCGCCTTAGGGGAA+AGG | - | chr4_1:78944782-78944801 | Msa0575170:intron | 55.0% | |
| !!! | GCGCTGCTTTTTTGGAGGAG+AGG | - | chr4_1:78944823-78944842 | Msa0575170:intron | 55.0% |
| ! | TGCCCTGTTTTCCCTTGAGG+GGG | - | chr4_1:78945287-78945306 | Msa0575170:intron | 55.0% |
| CTTCCCCCTCAAGGGAAAAC+AGG | + | chr4_1:78945293-78945312 | None:intergenic | 55.0% | |
| ! | CTGTTTTCCCTTGAGGGGGA+AGG | - | chr4_1:78945291-78945310 | Msa0575170:intron | 55.0% |
| CTCTACATCCTTCCCCCTCA+AGG | + | chr4_1:78945302-78945321 | None:intergenic | 55.0% | |
| TCCCACCGCCGACGATAAGA+AGG | - | chr4_1:78938679-78938698 | Msa0575170:three_prime_UTR | 60.0% | |
| GACCTTCTTATCGTCGGCGG+TGG | + | chr4_1:78938684-78938703 | None:intergenic | 60.0% | |
| GGGGAATGGAGCCTTGCTAG+GGG | - | chr4_1:78940212-78940231 | Msa0575170:intron | 60.0% | |
| AAGGGGGAACCTTGGCGCAA+CGG | - | chr4_1:78940712-78940731 | Msa0575170:CDS | 60.0% | |
| GAGAAGGGGTCCCACCGTTT+CGG | + | chr4_1:78940826-78940845 | None:intergenic | 60.0% | |
| GAAACGGTGGGACCCCTTCT+CGG | - | chr4_1:78940825-78940844 | Msa0575170:intron | 60.0% | |
| CGCATTCGTAGGGTCCGAGA+AGG | + | chr4_1:78940842-78940861 | None:intergenic | 60.0% | |
| CCGCAACGTGACAGCGCTAT+AGG | + | chr4_1:78942570-78942589 | None:intergenic | 60.0% | |
| ATAGCGCTGTCACGTTGCGG+AGG | - | chr4_1:78942570-78942589 | Msa0575170:intron | 60.0% | |
| TAGCGCTGTCACGTTGCGGA+GGG | - | chr4_1:78942571-78942590 | Msa0575170:intron | 60.0% | |
| TGACTGCTGCCGTACTTGCC+TGG | - | chr4_1:78942599-78942618 | Msa0575170:intron | 60.0% | |
| GACTGCTGCCGTACTTGCCT+GGG | - | chr4_1:78942600-78942619 | Msa0575170:intron | 60.0% | |
| ACTGCTGCCGTACTTGCCTG+GGG | - | chr4_1:78942601-78942620 | Msa0575170:intron | 60.0% | |
| TTCGTGGCCCCAGGCAAGTA+CGG | + | chr4_1:78942611-78942630 | None:intergenic | 60.0% | |
| TTGCCTGGGGCCACGAATTG+TGG | - | chr4_1:78942614-78942633 | Msa0575170:intron | 60.0% | |
| TGCCTGGGGCCACGAATTGT+GGG | - | chr4_1:78942615-78942634 | Msa0575170:intron | 60.0% | |
| TTCCCACAATTCGTGGCCCC+AGG | + | chr4_1:78942620-78942639 | None:intergenic | 60.0% | |
| GGCGTCACTGAAATCCGCCA+AGG | + | chr4_1:78944398-78944417 | None:intergenic | 60.0% | |
| GGATTAGGGAGGTCATCCGG+TGG | - | chr4_1:78944665-78944684 | Msa0575170:intron | 60.0% | |
| ATGGCACCCCAGTCCAAGGC+AGG | + | chr4_1:78941340-78941359 | None:intergenic | 65.0% | |
| GGAGATGGCACCCCAGTCCA+AGG | + | chr4_1:78941344-78941363 | None:intergenic | 65.0% | |
| TCGTCGGCGGTGGGAATCGG+TGG | + | chr4_1:78938674-78938693 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78938545 | 78945569 | 78938545 | ID=Msa0575170;Name=Msa0575170 |
| chr4_1 | mRNA | 78938545 | 78945569 | 78938545 | ID=Msa0575170-mRNA-1;Parent=Msa0575170;Name=Msa0575170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=111|0.9|0.90|1|1|1|11|482|287 |
| chr4_1 | exon | 78938545 | 78939083 | 78938545 | ID=Msa0575170-mRNA-1:exon:28087;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78939233 | 78939328 | 78939233 | ID=Msa0575170-mRNA-1:exon:28086;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78940689 | 78940772 | 78940689 | ID=Msa0575170-mRNA-1:exon:28085;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78940848 | 78940916 | 78940848 | ID=Msa0575170-mRNA-1:exon:28084;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78941856 | 78941957 | 78941856 | ID=Msa0575170-mRNA-1:exon:28083;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78943866 | 78943931 | 78943866 | ID=Msa0575170-mRNA-1:exon:28082;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78944092 | 78944142 | 78944092 | ID=Msa0575170-mRNA-1:exon:28081;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78944491 | 78944586 | 78944491 | ID=Msa0575170-mRNA-1:exon:28080;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78945006 | 78945048 | 78945006 | ID=Msa0575170-mRNA-1:exon:28079;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78945162 | 78945243 | 78945162 | ID=Msa0575170-mRNA-1:exon:28078;Parent=Msa0575170-mRNA-1 |
| chr4_1 | exon | 78945341 | 78945569 | 78945341 | ID=Msa0575170-mRNA-1:exon:28077;Parent=Msa0575170-mRNA-1 |
| chr4_1 | five_prime_UTR | 78945459 | 78945569 | 78945459 | ID=Msa0575170-mRNA-1:five_prime_utr;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78945341 | 78945458 | 78945341 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78945162 | 78945243 | 78945162 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78945006 | 78945048 | 78945006 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78944491 | 78944586 | 78944491 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78944092 | 78944142 | 78944092 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78943866 | 78943931 | 78943866 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78941856 | 78941957 | 78941856 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78940848 | 78940916 | 78940848 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78940689 | 78940772 | 78940689 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78939233 | 78939328 | 78939233 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | CDS | 78939027 | 78939083 | 78939027 | ID=Msa0575170-mRNA-1:cds;Parent=Msa0575170-mRNA-1 |
| chr4_1 | three_prime_UTR | 78938545 | 78939026 | 78938545 | ID=Msa0575170-mRNA-1:three_prime_utr;Parent=Msa0575170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
