Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601290 | KEH29850.1 | 98.333 | 120 | 2 | 0 | 1 | 120 | 44 | 163 | 3.98e-79 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601290 | sp|Q9ZUX4|UMP2_ARATH | 57.377 | 122 | 40 | 5 | 1 | 119 | 1 | 113 | 3.44e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0601290 | 0.804623 | 1.976693e-49 | -8.615850e-47 |
| Msa0015300 | Msa0601290 | 0.825076 | 5.708905e-54 | -8.615850e-47 |
| Msa0025730 | Msa0601290 | 0.808681 | 2.748280e-50 | -8.615850e-47 |
| Msa0073480 | Msa0601290 | 0.805958 | 1.038275e-49 | -8.615850e-47 |
| Msa0084940 | Msa0601290 | 0.812243 | 4.676622e-51 | -8.615850e-47 |
| Msa0089360 | Msa0601290 | 0.804115 | 2.521540e-49 | -8.615850e-47 |
| Msa0121620 | Msa0601290 | 0.804960 | 1.680399e-49 | -8.615850e-47 |
| Msa0149000 | Msa0601290 | 0.844340 | 8.033095e-59 | -8.615850e-47 |
| Msa0168720 | Msa0601290 | 0.808417 | 3.129421e-50 | -8.615850e-47 |
| Msa0231880 | Msa0601290 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0399340 | Msa0601290 | 0.810703 | 1.010151e-50 | -8.615850e-47 |
| Msa0402330 | Msa0601290 | 0.824956 | 6.094991e-54 | -8.615850e-47 |
| Msa0436050 | Msa0601290 | 0.812893 | 3.371813e-51 | -8.615850e-47 |
| Msa0267970 | Msa0601290 | 0.803464 | 3.442563e-49 | -8.615850e-47 |
| Msa0273900 | Msa0601290 | 0.816786 | 4.622189e-52 | -8.615850e-47 |
| Msa0279790 | Msa0601290 | 0.801754 | 7.755702e-49 | -8.615850e-47 |
| Msa0282250 | Msa0601290 | 0.802819 | 4.680490e-49 | -8.615850e-47 |
| Msa0288100 | Msa0601290 | 0.800287 | 1.546821e-48 | -8.615850e-47 |
| Msa0291500 | Msa0601290 | 0.815579 | 8.599950e-52 | -8.615850e-47 |
| Msa0329350 | Msa0601290 | 0.805045 | 1.613446e-49 | -8.615850e-47 |
| Msa0355270 | Msa0601290 | 0.825736 | 3.982879e-54 | -8.615850e-47 |
| Msa0529680 | Msa0601290 | 0.803270 | 3.776594e-49 | -8.615850e-47 |
| Msa0568820 | Msa0601290 | 0.809052 | 2.289760e-50 | -8.615850e-47 |
| Msa0593650 | Msa0601290 | 0.801664 | 8.094584e-49 | -8.615850e-47 |
| Msa0601290 | Msa0607050 | 0.800263 | 1.564257e-48 | -8.615850e-47 |
| Msa0601290 | Msa0616020 | 0.841302 | 5.160422e-58 | -8.615850e-47 |
| Msa0601290 | Msa0619070 | 0.807439 | 5.050921e-50 | -8.615850e-47 |
| Msa0601290 | Msa0623700 | 0.825907 | 3.629455e-54 | -8.615850e-47 |
| Msa0601290 | Msa0649490 | 0.813641 | 2.309099e-51 | -8.615850e-47 |
| Msa0601290 | Msa0680240 | 0.866190 | 3.416685e-65 | -8.615850e-47 |
| Msa0601290 | Msa0742380 | 0.803617 | 3.200967e-49 | -8.615850e-47 |
| Msa0601290 | Msa0743720 | 0.809384 | 1.943491e-50 | -8.615850e-47 |
| Msa0601290 | Msa0750880 | 0.803264 | 3.787606e-49 | -8.615850e-47 |
| Msa0601290 | Msa0831870 | 0.807468 | 4.980890e-50 | -8.615850e-47 |
| Msa0601290 | Msa0869120 | 0.801058 | 1.077211e-48 | -8.615850e-47 |
| Msa0601290 | Msa0876200 | 0.826066 | 3.326062e-54 | -8.615850e-47 |
| Msa0601290 | Msa0876660 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0601290 | Msa0902760 | 0.808338 | 3.252359e-50 | -8.615850e-47 |
| Msa0601290 | Msa0936270 | 0.800549 | 1.368119e-48 | -8.615850e-47 |
| Msa0601290 | Msa0979010 | 0.815152 | 1.070177e-51 | -8.615850e-47 |
| Msa0601290 | Msa1013400 | 0.820862 | 5.479602e-53 | -8.615850e-47 |
| Msa0601290 | Msa1093530 | 0.807362 | 5.244925e-50 | -8.615850e-47 |
| Msa0601290 | Msa1119540 | 0.804226 | 2.390865e-49 | -8.615850e-47 |
| Msa0601290 | Msa1126770 | 0.803126 | 4.045604e-49 | -8.615850e-47 |
| Msa0601290 | Msa1127890 | 0.811926 | 5.482511e-51 | -8.615850e-47 |
| Msa0601290 | Msa1179460 | 0.809254 | 2.072092e-50 | -8.615850e-47 |
| Msa0601290 | Msa1187840 | 0.811821 | 5.780557e-51 | -8.615850e-47 |
| Msa0601290 | Msa1199560 | 0.801125 | 1.043302e-48 | -8.615850e-47 |
| Msa0601290 | Msa1201560 | 0.810045 | 1.400786e-50 | -8.615850e-47 |
| Msa0601290 | Msa1207270 | 0.821430 | 4.053710e-53 | -8.615850e-47 |
| Msa0601290 | Msa1254700 | 0.812322 | 4.495274e-51 | -8.615850e-47 |
| Msa0601290 | Msa1267960 | 0.821578 | 3.747200e-53 | -8.615850e-47 |
| Msa0601290 | Msa1275540 | 0.806347 | 8.596680e-50 | -8.615850e-47 |
| Msa0601290 | Msa1283170 | 0.804993 | 1.654090e-49 | -8.615850e-47 |
| Msa0601290 | Msa1294480 | 0.826266 | 2.981238e-54 | -8.615850e-47 |
| Msa0601290 | Msa1316830 | 0.800582 | 1.346801e-48 | -8.615850e-47 |
| Msa0601290 | Msa1328700 | 0.800230 | 1.588832e-48 | -8.615850e-47 |
| Msa0601290 | Msa1340650 | 0.805209 | 1.491083e-49 | -8.615850e-47 |
| Msa0601290 | Msa1353060 | 0.806691 | 7.274293e-50 | -8.615850e-47 |
| Msa0601290 | Msa1361100 | 0.804449 | 2.148390e-49 | -8.615850e-47 |
| Msa0601290 | Msa1374120 | 0.804010 | 2.652588e-49 | -8.615850e-47 |
| Msa0601290 | Msa1397810 | 0.824346 | 8.483614e-54 | -8.615850e-47 |
| Msa0601290 | Msa1466300 | 0.805004 | 1.645840e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601290 | MtrunA17_Chr4g0026281 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 6.36e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0601290 | AT2G27730.2 | 57.377 | 122 | 40 | 5 | 1 | 119 | 1 | 113 | 3.50e-29 | 102 |
| Msa0601290 | AT2G27730.3 | 57.377 | 122 | 40 | 5 | 1 | 119 | 1 | 113 | 3.50e-29 | 102 |
| Msa0601290 | AT2G27730.1 | 57.377 | 122 | 40 | 5 | 1 | 119 | 1 | 113 | 3.50e-29 | 102 |
| Msa0601290 | AT2G27730.4 | 57.377 | 122 | 40 | 5 | 1 | 119 | 1 | 113 | 3.50e-29 | 102 |
Find 61 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTTGCAGTGCCTTTA+AGG | 0.156432 | 4_2:+43879988 | None:intergenic |
| GCTTTAGGGTGGTACCTTAA+AGG | 0.241697 | 4_2:-43880002 | Msa0601290:CDS |
| CCTGCAGCTGGTGTTGCTTC+TGG | 0.262484 | 4_2:+43880152 | None:intergenic |
| CTTCAATCCTCCTGCACTTC+CGG | 0.285698 | 4_2:+43879966 | None:intergenic |
| AGTGACAAATACCGGAATTA+TGG | 0.295334 | 4_2:-43880056 | Msa0601290:CDS |
| CAAAATCATTTGGTATTCAT+TGG | 0.315086 | 4_2:-43879737 | Msa0601290:three_prime_UTR |
| GCAACACCAGCTGCAGGTTC+GGG | 0.326558 | 4_2:-43880146 | Msa0601290:CDS |
| TAAGTGACATTATGAATATA+CGG | 0.333382 | 4_2:+43879796 | None:intergenic |
| AGCAACACCAGCTGCAGGTT+CGG | 0.341778 | 4_2:-43880147 | Msa0601290:CDS |
| GTGAAGGATACTCAATTATA+AGG | 0.349771 | 4_2:-43879609 | Msa0601290:three_prime_UTR |
| CTTGATTGATCAAAATCATT+TGG | 0.358220 | 4_2:-43879747 | Msa0601290:three_prime_UTR |
| GCTGGTGTTGCTTCTGGTTG+AGG | 0.375661 | 4_2:+43880158 | None:intergenic |
| GAAAGCTGAGCAAGAGAAGT+TGG | 0.381787 | 4_2:-43882849 | Msa0601290:CDS |
| GTATTTGTCACTTGAAACTT+TGG | 0.390932 | 4_2:+43880067 | None:intergenic |
| AGGCTATTTAGCAGTGGCTC+TGG | 0.405468 | 4_2:-43884111 | Msa0601290:CDS |
| AGTGGCTCTGGGAAAGTTCT+TGG | 0.406187 | 4_2:-43884099 | Msa0601290:CDS |
| AGAGTGAAGGTTCGATAGAA+AGG | 0.420140 | 4_2:+43884699 | None:intergenic |
| CCTCTCCTCTCAACACAATC+TGG | 0.420178 | 4_2:-43884674 | Msa0601290:intron |
| CAGCTACAACTCCATAATTC+CGG | 0.428800 | 4_2:+43880045 | None:intergenic |
| TATTTGTCACTTGAAACTTT+GGG | 0.432133 | 4_2:+43880068 | None:intergenic |
| CGGAATTATGGAGTTGTAGC+TGG | 0.439569 | 4_2:-43880044 | Msa0601290:CDS |
| TGCAAAGAAGCCGGAAGTGC+AGG | 0.446387 | 4_2:-43879976 | Msa0601290:CDS |
| ATTCTAAACCCTTCCTTCAC+GGG | 0.455693 | 4_2:+43884764 | None:intergenic |
| TGCGGAAAATGCTTACTTCA+AGG | 0.458195 | 4_2:-43884061 | Msa0601290:intron |
| ATGTCCAGAGCTACTTGGTT+TGG | 0.462118 | 4_2:+43880106 | None:intergenic |
| TTATAATTGAGTATCCTTCA+CGG | 0.468277 | 4_2:+43879611 | None:intergenic |
| TATTCTAAACCCTTCCTTCA+CGG | 0.469888 | 4_2:+43884763 | None:intergenic |
| CAGCAAGATTTGCATCTAGA+AGG | 0.476156 | 4_2:-43884131 | Msa0601290:CDS |
| GGCTATTTAGCAGTGGCTCT+GGG | 0.480604 | 4_2:-43884110 | Msa0601290:CDS |
| GTTGGAGAAGCTTGCTCGCA+AGG | 0.496581 | 4_2:-43882831 | Msa0601290:intron |
| TCTGGACATTCTGATACATC+AGG | 0.510900 | 4_2:-43880092 | Msa0601290:CDS |
| TCAGAATGTCCAGAGCTACT+TGG | 0.513419 | 4_2:+43880101 | None:intergenic |
| AATCCATGCTAACAGTATGA+TGG | 0.517136 | 4_2:+43879853 | None:intergenic |
| AAGTTTCAAGTGACAAATAC+CGG | 0.523388 | 4_2:-43880064 | Msa0601290:CDS |
| TTAAACAATCCCGTGAAGGA+AGG | 0.527185 | 4_2:-43884773 | Msa0601290:five_prime_UTR |
| AGAGCTACTTGGTTTGGCAT+CGG | 0.527529 | 4_2:+43880112 | None:intergenic |
| TAAACAATCCCGTGAAGGAA+GGG | 0.530589 | 4_2:-43884772 | Msa0601290:five_prime_UTR |
| ATTCCATCATACTGTTAGCA+TGG | 0.530985 | 4_2:-43879856 | Msa0601290:three_prime_UTR |
| CATTTGGTATTCATTGGCAA+TGG | 0.533138 | 4_2:-43879731 | Msa0601290:three_prime_UTR |
| AGGATTGAAGATTTCAGTTG+TGG | 0.533949 | 4_2:-43879953 | Msa0601290:exon |
| GATGCCAAACCAAGTAGCTC+TGG | 0.534859 | 4_2:-43880110 | Msa0601290:CDS |
| TAAAGGCACTGCAAAGAAGC+CGG | 0.541881 | 4_2:-43879985 | Msa0601290:CDS |
| GAGAGGAGAGGTGAGAGTGA+AGG | 0.546841 | 4_2:+43884686 | None:intergenic |
| CTCTGGGAAAGTTCTTGGTG+AGG | 0.550551 | 4_2:-43884094 | Msa0601290:CDS |
| CCAGAAGCAACACCAGCTGC+AGG | 0.553579 | 4_2:-43880152 | Msa0601290:CDS |
| GAACCACCCGAACCTGCAGC+TGG | 0.565062 | 4_2:+43880140 | None:intergenic |
| AAGTGACATTATGAATATAC+GGG | 0.570964 | 4_2:+43879797 | None:intergenic |
| AACTGACAGCAATGGCAACA+CGG | 0.581700 | 4_2:-43884158 | Msa0601290:exon |
| ACTGACAGCAATGGCAACAC+GGG | 0.584119 | 4_2:-43884157 | Msa0601290:exon |
| TGGGAAAGTTCTTGGTGAGG+AGG | 0.587276 | 4_2:-43884091 | Msa0601290:CDS |
| ACACCAGCTGCAGGTTCGGG+TGG | 0.595354 | 4_2:-43880143 | Msa0601290:CDS |
| GAATCAGTGCACACTAGTGT+TGG | 0.595469 | 4_2:-43879659 | Msa0601290:three_prime_UTR |
| AATTACCAGATTGTGTTGAG+AGG | 0.596920 | 4_2:+43884669 | None:intergenic |
| CCAGATTGTGTTGAGAGGAG+AGG | 0.623744 | 4_2:+43884674 | None:intergenic |
| ATATCAAGTAAGAACCGTGA+AGG | 0.625807 | 4_2:-43879625 | Msa0601290:three_prime_UTR |
| GACAGCAATGGCAACACGGG+TGG | 0.644840 | 4_2:-43884154 | Msa0601290:exon |
| AAAGAAGCCGGAAGTGCAGG+AGG | 0.652463 | 4_2:-43879973 | Msa0601290:CDS |
| GAAAGGAAGCAAAAGAAGTG+TGG | 0.662770 | 4_2:+43884716 | None:intergenic |
| TCTAGAAGGCTATTTAGCAG+TGG | 0.663582 | 4_2:-43884117 | Msa0601290:CDS |
| GTATTTAAACAATCCCGTGA+AGG | 0.669178 | 4_2:-43884777 | None:intergenic |
| TATGATGGAATAAAGCAGAG+TGG | 0.735765 | 4_2:+43879868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAGATAAAATTAAA+GGG | - | chr4_2:43881918-43881937 | Msa0601290:intron | 10.0% |
| !! | TAAATTATAATCATCATTTA+TGG | + | chr4_2:43882878-43882897 | None:intergenic | 10.0% |
| !! | AAAATATAAACTTGAAAAAA+TGG | - | chr4_2:43883594-43883613 | Msa0601290:intron | 10.0% |
| !! | AAATAAAATTGCTAATTATT+TGG | + | chr4_2:43883830-43883849 | None:intergenic | 10.0% |
| !!! | TATTTCAAATGATTTCATTT+TGG | - | chr4_2:43880939-43880958 | Msa0601290:intron | 15.0% |
| !!! | AAATTTTTATCAGTTTTTGT+GGG | - | chr4_2:43881697-43881716 | Msa0601290:intron | 15.0% |
| !! | GGAAAAATAGATAAAATTAA+AGG | - | chr4_2:43881917-43881936 | Msa0601290:intron | 15.0% |
| !!! | TTTATTTTTGGGATTTAAAT+GGG | + | chr4_2:43882428-43882447 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTGGGATTTAAA+TGG | + | chr4_2:43882429-43882448 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCCTAATAAA+CGG | + | chr4_2:43882530-43882549 | None:intergenic | 15.0% |
| !! | AATATAGTTTAATATGTACA+GGG | + | chr4_2:43882945-43882964 | None:intergenic | 15.0% |
| !! | TAATATAGTTTAATATGTAC+AGG | + | chr4_2:43882946-43882965 | None:intergenic | 15.0% |
| !!! | CATTTTATTATAACCTTAAA+AGG | + | chr4_2:43883761-43883780 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTAATTTCGTTT+TGG | - | chr4_2:43884442-43884461 | Msa0601290:intron | 15.0% |
| !!! | GTTTTTTTTAATTTCGTTTT+GGG | - | chr4_2:43884443-43884462 | Msa0601290:intron | 15.0% |
| !! | TAAAACATTGTAAACAAAAA+AGG | + | chr4_2:43884544-43884563 | None:intergenic | 15.0% |
| !! | AAATGAAATGAAAGTGAAAT+TGG | + | chr4_2:43879827-43879846 | None:intergenic | 20.0% |
| !! | TTAAGTATTCAAGTGTTAAA+GGG | - | chr4_2:43879939-43879958 | Msa0601290:three_prime_UTR | 20.0% |
| !!! | TTTGAAGTACATTAACAAAA+GGG | - | chr4_2:43880032-43880051 | Msa0601290:CDS | 20.0% |
| !! | TTTAAAGAACATATACAGTA+CGG | + | chr4_2:43880118-43880137 | None:intergenic | 20.0% |
| !!! | TTTATTTTCGTAATTGCTAT+CGG | - | chr4_2:43880379-43880398 | Msa0601290:intron | 20.0% |
| !!! | CAAAGATTTTAAACATGTTT+TGG | + | chr4_2:43880726-43880745 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAGGAAATGTCA+TGG | - | chr4_2:43880793-43880812 | Msa0601290:intron | 20.0% |
| !! | AAAAAAAAACTGCATCAAAA+AGG | + | chr4_2:43880886-43880905 | None:intergenic | 20.0% |
| !!! | AAATGATTTCATTTTGGATA+TGG | - | chr4_2:43880945-43880964 | Msa0601290:intron | 20.0% |
| !!! | TATTTCTTAGAATTTTTGGT+TGG | + | chr4_2:43881180-43881199 | None:intergenic | 20.0% |
| !!! | AAGCTATTTCTTAGAATTTT+TGG | + | chr4_2:43881184-43881203 | None:intergenic | 20.0% |
| !!! | GAAATTTTTATCAGTTTTTG+TGG | - | chr4_2:43881696-43881715 | Msa0601290:intron | 20.0% |
| !! | ACATTTAGTACTTATTTGAT+GGG | + | chr4_2:43881978-43881997 | None:intergenic | 20.0% |
| !! | TACATTTAGTACTTATTTGA+TGG | + | chr4_2:43881979-43881998 | None:intergenic | 20.0% |
| !!! | TTCTGAATACTATATCATTT+TGG | + | chr4_2:43882003-43882022 | None:intergenic | 20.0% |
| !! | ATATTATCTTGTTCATCATT+TGG | - | chr4_2:43882150-43882169 | Msa0601290:intron | 20.0% |
| !! | TCCCAAAAATAAAATACTAA+AGG | - | chr4_2:43882435-43882454 | Msa0601290:intron | 20.0% |
| !!! | GCCTTTAGTATTTTATTTTT+GGG | + | chr4_2:43882439-43882458 | None:intergenic | 20.0% |
| !!! | TGCCTTTAGTATTTTATTTT+TGG | + | chr4_2:43882440-43882459 | None:intergenic | 20.0% |
| !! | ATTTCAATTTCCTAATAAAC+GGG | + | chr4_2:43882529-43882548 | None:intergenic | 20.0% |
| !!! | ATTATCACTCTTTATCTTTT+GGG | + | chr4_2:43882700-43882719 | None:intergenic | 20.0% |
| !!! | TATTATCACTCTTTATCTTT+TGG | + | chr4_2:43882701-43882720 | None:intergenic | 20.0% |
| !! | ATCTATCTTGTATCATATTA+AGG | + | chr4_2:43882759-43882778 | None:intergenic | 20.0% |
| !! | AATATGATACAAGATAGATA+TGG | - | chr4_2:43882760-43882779 | Msa0601290:intron | 20.0% |
| !! | ATATGATACAAGATAGATAT+GGG | - | chr4_2:43882761-43882780 | Msa0601290:intron | 20.0% |
| !! | ATAATCATCATTTATGGATA+AGG | + | chr4_2:43882872-43882891 | None:intergenic | 20.0% |
| !! | ATATAGTTTAATATGTACAG+GGG | + | chr4_2:43882944-43882963 | None:intergenic | 20.0% |
| !!! | TTTTGCATGATATCTTTATA+GGG | + | chr4_2:43882972-43882991 | None:intergenic | 20.0% |
| !!! | ATTTTGCATGATATCTTTAT+AGG | + | chr4_2:43882973-43882992 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTAAGGAAATCAT+TGG | + | chr4_2:43883134-43883153 | None:intergenic | 20.0% |
| !!! | TACTCTTTTGATATAAATCT+TGG | - | chr4_2:43883160-43883179 | Msa0601290:intron | 20.0% |
| !! | AATAACATGGTTATTAAGAA+AGG | + | chr4_2:43883473-43883492 | None:intergenic | 20.0% |
| !! | CAATGAAATGTATTTAAGTA+AGG | - | chr4_2:43883527-43883546 | Msa0601290:intron | 20.0% |
| !!! | AAGAGATATTTTTTAGCAAT+TGG | - | chr4_2:43883564-43883583 | Msa0601290:intron | 20.0% |
| !! | ATTGACATAAATTAGAGAAA+CGG | + | chr4_2:43883933-43883952 | None:intergenic | 20.0% |
| !! | TAAGTGACATTATGAATATA+CGG | + | chr4_2:43884575-43884594 | None:intergenic | 20.0% |
| !!! | AATCAAGTAACATAATTTTG+AGG | + | chr4_2:43884608-43884627 | None:intergenic | 20.0% |
| !! | GTAAAATATGCGTGAATTTT+TGG | - | chr4_2:43879901-43879920 | Msa0601290:three_prime_UTR | 25.0% |
| ! | TAACACTTGAATACTTAACA+AGG | + | chr4_2:43879937-43879956 | None:intergenic | 25.0% |
| ! | GTTAAGTATTCAAGTGTTAA+AGG | - | chr4_2:43879938-43879957 | Msa0601290:three_prime_UTR | 25.0% |
| ! | TAAGTATTCAAGTGTTAAAG+GGG | - | chr4_2:43879940-43879959 | Msa0601290:three_prime_UTR | 25.0% |
| !! | TCAAAGTTGATTGAATAAAG+TGG | + | chr4_2:43880017-43880036 | None:intergenic | 25.0% |
| !!! | CTTTGAAGTACATTAACAAA+AGG | - | chr4_2:43880031-43880050 | Msa0601290:CDS | 25.0% |
| ! | TTGAAGTACATTAACAAAAG+GGG | - | chr4_2:43880033-43880052 | Msa0601290:CDS | 25.0% |
| !! | ATAAACTAAAGCATGTTTTG+AGG | + | chr4_2:43880336-43880355 | None:intergenic | 25.0% |
| ! | ATTATTATTAGTGTTGTGTC+CGG | - | chr4_2:43880496-43880515 | Msa0601290:intron | 25.0% |
| !!! | TGAGGTGTTTTATTTGTAAT+TGG | - | chr4_2:43880561-43880580 | Msa0601290:intron | 25.0% |
| !!! | GAGGTGTTTTATTTGTAATT+GGG | - | chr4_2:43880562-43880581 | Msa0601290:intron | 25.0% |
| !!! | AGGTGTTTTATTTGTAATTG+GGG | - | chr4_2:43880563-43880582 | Msa0601290:intron | 25.0% |
| ! | TGTCATTCTAATGGTTAAAA+AGG | - | chr4_2:43880621-43880640 | Msa0601290:intron | 25.0% |
| !!! | GATTTTAAACATGTTTTGGA+AGG | + | chr4_2:43880722-43880741 | None:intergenic | 25.0% |
| ! | ATTCTTTATAAACACTACAC+AGG | + | chr4_2:43881111-43881130 | None:intergenic | 25.0% |
| ! | TGTGTAGTGTTTATAAAGAA+TGG | - | chr4_2:43881110-43881129 | Msa0601290:intron | 25.0% |
| ! | GTGTAGTGTTTATAAAGAAT+GGG | - | chr4_2:43881111-43881130 | Msa0601290:intron | 25.0% |
| ! | TTCTTCTAATTTCTAACAAC+AGG | - | chr4_2:43881240-43881259 | Msa0601290:intron | 25.0% |
| ! | AAATAAGTAAGTACCACAAA+TGG | + | chr4_2:43881488-43881507 | None:intergenic | 25.0% |
| ! | GAATAAGAGATGAAATTTGA+GGG | + | chr4_2:43881567-43881586 | None:intergenic | 25.0% |
| ! | AGAATAAGAGATGAAATTTG+AGG | + | chr4_2:43881568-43881587 | None:intergenic | 25.0% |
| ! | TGAGTATTTATGTATCTTGT+TGG | + | chr4_2:43881892-43881911 | None:intergenic | 25.0% |
| ! | GATACATAAATACTCAAAAG+TGG | - | chr4_2:43881896-43881915 | Msa0601290:intron | 25.0% |
| !!! | CTGTCATTTTGTTTACTTTT+AGG | + | chr4_2:43882040-43882059 | None:intergenic | 25.0% |
| !!! | CTTTTAGAACTTGACTTTAA+TGG | + | chr4_2:43882064-43882083 | None:intergenic | 25.0% |
| ! | TGTAAAAATGAGACGATTAA+TGG | + | chr4_2:43882664-43882683 | None:intergenic | 25.0% |
| !!! | TTAATCGTCTCATTTTTACA+TGG | - | chr4_2:43882664-43882683 | Msa0601290:intron | 25.0% |
| ! | CATATTAAGGATAAGTATGT+GGG | + | chr4_2:43882746-43882765 | None:intergenic | 25.0% |
| ! | TCATATTAAGGATAAGTATG+TGG | + | chr4_2:43882747-43882766 | None:intergenic | 25.0% |
| !!! | TAGATGTTGATTTTGTTAAG+TGG | + | chr4_2:43883009-43883028 | None:intergenic | 25.0% |
| ! | GATTTCCTTAAAAAAACTAG+AGG | - | chr4_2:43883136-43883155 | Msa0601290:intron | 25.0% |
| !!! | AGTATCCTCTAGTTTTTTTA+AGG | + | chr4_2:43883144-43883163 | None:intergenic | 25.0% |
| ! | GTATGATATGTATATGTAAC+CGG | - | chr4_2:43883184-43883203 | Msa0601290:intron | 25.0% |
| !! | ATCTAAAATGAAAATGCTTC+AGG | + | chr4_2:43883283-43883302 | None:intergenic | 25.0% |
| ! | ATCATCTAGTTACAATAACA+TGG | + | chr4_2:43883486-43883505 | None:intergenic | 25.0% |
| ! | TACTTACAACTCTTAACTAA+AGG | - | chr4_2:43883803-43883822 | Msa0601290:intron | 25.0% |
| ! | AAGAGAGAAAGAAAAAAAGA+TGG | + | chr4_2:43884016-43884035 | None:intergenic | 25.0% |
| ! | AATGCTTAACATTAAGTTCA+AGG | + | chr4_2:43884172-43884191 | None:intergenic | 25.0% |
| ! | AAGCATTTATGTTCTAATGT+AGG | - | chr4_2:43884185-43884204 | Msa0601290:intron | 25.0% |
| ! | AGCATTTATGTTCTAATGTA+GGG | - | chr4_2:43884186-43884205 | Msa0601290:intron | 25.0% |
| !! | TATTTGTCACTTGAAACTTT+GGG | + | chr4_2:43884303-43884322 | None:intergenic | 25.0% |
| !!! | ATAACAATTTTTGCTGCTTT+AGG | - | chr4_2:43884351-43884370 | Msa0601290:intron | 25.0% |
| !!! | TAACAATTTTTGCTGCTTTA+GGG | - | chr4_2:43884352-43884371 | Msa0601290:intron | 25.0% |
| ! | AAGTGACATTATGAATATAC+GGG | + | chr4_2:43884574-43884593 | None:intergenic | 25.0% |
| ! | CTTGATTGATCAAAATCATT+TGG | - | chr4_2:43884621-43884640 | Msa0601290:intron | 25.0% |
| ! | CAAAATCATTTGGTATTCAT+TGG | - | chr4_2:43884631-43884650 | Msa0601290:intron | 25.0% |
| !! | TGATGAGAAAAATTTGAGAT+TGG | - | chr4_2:43884668-43884687 | Msa0601290:intron | 25.0% |
| ! | TTATAATTGAGTATCCTTCA+CGG | + | chr4_2:43884760-43884779 | None:intergenic | 25.0% |
| !! | TAGATCTCATCAAGTTTTAG+GGG | + | chr4_2:43879877-43879896 | None:intergenic | 30.0% |
| ! | CTAGATCTCATCAAGTTTTA+GGG | + | chr4_2:43879878-43879897 | None:intergenic | 30.0% |
| ! | ACTAGATCTCATCAAGTTTT+AGG | + | chr4_2:43879879-43879898 | None:intergenic | 30.0% |
| !! | AAATATGCGTGAATTTTTGG+TGG | - | chr4_2:43879904-43879923 | Msa0601290:three_prime_UTR | 30.0% |
| AAGTATTCAAGTGTTAAAGG+GGG | - | chr4_2:43879941-43879960 | Msa0601290:three_prime_UTR | 30.0% | |
| TGAAGTACATTAACAAAAGG+GGG | - | chr4_2:43880034-43880053 | Msa0601290:CDS | 30.0% | |
| ATTTGATGTCAGTGTAAAAC+TGG | - | chr4_2:43880083-43880102 | Msa0601290:CDS | 30.0% | |
| AAGTAAAAAACTGACAGCAA+TGG | - | chr4_2:43880202-43880221 | Msa0601290:intron | 30.0% | |
| ! | AATGGTTAAAAAGGTGCATA+TGG | - | chr4_2:43880630-43880649 | Msa0601290:intron | 30.0% |
| !!! | AAACATGTTTTGGAAGGATT+TGG | + | chr4_2:43880716-43880735 | None:intergenic | 30.0% |
| TTTGGATATGGCTAATATAC+TGG | - | chr4_2:43880957-43880976 | Msa0601290:intron | 30.0% | |
| TATGGCTAATATACTGGAAT+AGG | - | chr4_2:43880963-43880982 | Msa0601290:intron | 30.0% | |
| ATGGCTAATATACTGGAATA+GGG | - | chr4_2:43880964-43880983 | Msa0601290:intron | 30.0% | |
| AGGCCACAATTAAGAAATTA+GGG | + | chr4_2:43881022-43881041 | None:intergenic | 30.0% | |
| AAGGCCACAATTAAGAAATT+AGG | + | chr4_2:43881023-43881042 | None:intergenic | 30.0% | |
| TCCCACATTACTTATAGATA+TGG | - | chr4_2:43881085-43881104 | Msa0601290:intron | 30.0% | |
| GCCATATCTATAAGTAATGT+GGG | + | chr4_2:43881089-43881108 | None:intergenic | 30.0% | |
| !! | ATAGCTTTAGCCAAAGTATT+TGG | - | chr4_2:43881197-43881216 | Msa0601290:intron | 30.0% |
| !! | TAGCTTTAGCCAAAGTATTT+GGG | - | chr4_2:43881198-43881217 | Msa0601290:intron | 30.0% |
| TTAGAAATTAGAAGAACCCA+AGG | + | chr4_2:43881236-43881255 | None:intergenic | 30.0% | |
| !! | TCTGTTAGTTTGTTAGTACA+CGG | - | chr4_2:43881288-43881307 | Msa0601290:intron | 30.0% |
| ACATGCTTGTATAAATACGA+AGG | - | chr4_2:43881350-43881369 | Msa0601290:intron | 30.0% | |
| !!! | AATCTTTTTCAATTGCACTG+TGG | - | chr4_2:43881591-43881610 | Msa0601290:intron | 30.0% |
| !! | ACTTGAAAGTACTTAACCTT+TGG | - | chr4_2:43881624-43881643 | Msa0601290:intron | 30.0% |
| !! | CTTGAAAGTACTTAACCTTT+GGG | - | chr4_2:43881625-43881644 | Msa0601290:intron | 30.0% |
| ACTATGTGTAGGATGATATT+GGG | + | chr4_2:43881665-43881684 | None:intergenic | 30.0% | |
| AACTATGTGTAGGATGATAT+TGG | + | chr4_2:43881666-43881685 | None:intergenic | 30.0% | |
| TCAATCAGAAAACTATGTGT+AGG | + | chr4_2:43881676-43881695 | None:intergenic | 30.0% | |
| ! | TTTTTATCAGTTTTTGTGGG+TGG | - | chr4_2:43881700-43881719 | Msa0601290:intron | 30.0% |
| ! | CTATCTAGGATTAACAACAT+AGG | + | chr4_2:43881765-43881784 | None:intergenic | 30.0% |
| ATGTTGTTAATCCTAGATAG+TGG | - | chr4_2:43881765-43881784 | Msa0601290:intron | 30.0% | |
| CAAGATAATATTGATGCATG+TGG | + | chr4_2:43882141-43882160 | None:intergenic | 30.0% | |
| AATTGTGATCTCTTAGTGTT+AGG | - | chr4_2:43882572-43882591 | Msa0601290:intron | 30.0% | |
| TGAAGTTTGTACACAGTTAA+CGG | - | chr4_2:43882597-43882616 | Msa0601290:intron | 30.0% | |
| !! | ACTCTTTATCTTTTGGGAAA+TGG | + | chr4_2:43882694-43882713 | None:intergenic | 30.0% |
| ! | TTTTTGTAACAATGTACCCA+TGG | + | chr4_2:43882811-43882830 | None:intergenic | 30.0% |
| ! | TTGATTTTGTTAAGTGGTTC+GGG | + | chr4_2:43883003-43883022 | None:intergenic | 30.0% |
| !! | GTTGATTTTGTTAAGTGGTT+CGG | + | chr4_2:43883004-43883023 | None:intergenic | 30.0% |
| ! | TCACAATATGATGATGAACT+TGG | - | chr4_2:43883041-43883060 | Msa0601290:intron | 30.0% |
| GAATCGTATTCCAAACATAT+GGG | - | chr4_2:43883108-43883127 | Msa0601290:intron | 30.0% | |
| TATGTATATGTAACCGGATA+TGG | - | chr4_2:43883190-43883209 | Msa0601290:intron | 30.0% | |
| ATGTATATGTAACCGGATAT+GGG | - | chr4_2:43883191-43883210 | Msa0601290:intron | 30.0% | |
| ! | ACATGACAAAAGCATATTTC+GGG | + | chr4_2:43883399-43883418 | None:intergenic | 30.0% |
| ! | CACATGACAAAAGCATATTT+CGG | + | chr4_2:43883400-43883419 | None:intergenic | 30.0% |
| ! | AAATATGCTTTTGTCATGTG+TGG | - | chr4_2:43883400-43883419 | Msa0601290:intron | 30.0% |
| TATTGTAACTAGATGATGCT+TGG | - | chr4_2:43883489-43883508 | Msa0601290:intron | 30.0% | |
| TATTTAAGTAAGGTGACACA+AGG | - | chr4_2:43883537-43883556 | Msa0601290:intron | 30.0% | |
| GTCTTTCGTTTAGTAGAAAT+AGG | + | chr4_2:43883871-43883890 | None:intergenic | 30.0% | |
| CTACTAAACGAAAGACTTAT+AGG | - | chr4_2:43883875-43883894 | Msa0601290:intron | 30.0% | |
| ! | ATGTGACAAAAAGAAAGTGT+CGG | + | chr4_2:43883982-43884001 | None:intergenic | 30.0% |
| GATAGAAAGAGAAGAGAAAT+GGG | + | chr4_2:43884078-43884097 | None:intergenic | 30.0% | |
| AGATAGAAAGAGAAGAGAAA+TGG | + | chr4_2:43884079-43884098 | None:intergenic | 30.0% | |
| CATACTACAAGAAATAACAG+TGG | + | chr4_2:43884129-43884148 | None:intergenic | 30.0% | |
| ! | GTATTTGTCACTTGAAACTT+TGG | + | chr4_2:43884304-43884323 | None:intergenic | 30.0% |
| ! | AAGTTTCAAGTGACAAATAC+CGG | - | chr4_2:43884304-43884323 | Msa0601290:intron | 30.0% |
| GTGAAGGATACTCAATTATA+AGG | - | chr4_2:43884759-43884778 | Msa0601290:five_prime_UTR | 30.0% | |
| TATTCTAAACCCTTCCTTCA+CGG | + | chr4_2:43879608-43879627 | None:intergenic | 35.0% | |
| AATTACCAGATTGTGTTGAG+AGG | + | chr4_2:43879702-43879721 | None:intergenic | 35.0% | |
| GGAGGATATGGTAAATTAGT+AGG | - | chr4_2:43880055-43880074 | Msa0601290:CDS | 35.0% | |
| ATTGACATAGACACAGATAC+CGG | + | chr4_2:43880518-43880537 | None:intergenic | 35.0% | |
| ACAAGTGTGTGTTATACTTG+AGG | - | chr4_2:43880543-43880562 | Msa0601290:intron | 35.0% | |
| ATACATACCATTGCATGTTC+CGG | - | chr4_2:43880592-43880611 | Msa0601290:intron | 35.0% | |
| CATTAGAATGACAGAGAATC+CGG | + | chr4_2:43880614-43880633 | None:intergenic | 35.0% | |
| TGCAATATTTGCACAAGCAA+TGG | + | chr4_2:43880762-43880781 | None:intergenic | 35.0% | |
| TGCCCCTAATTTCTTAATTG+TGG | - | chr4_2:43881016-43881035 | Msa0601290:intron | 35.0% | |
| GGCCACAATTAAGAAATTAG+GGG | + | chr4_2:43881021-43881040 | None:intergenic | 35.0% | |
| TTCATTGTGTTGGGTTTGAA+GGG | - | chr4_2:43881052-43881071 | Msa0601290:intron | 35.0% | |
| GGCCATATCTATAAGTAATG+TGG | + | chr4_2:43881090-43881109 | None:intergenic | 35.0% | |
| GACTTATGACCCAAATACTT+TGG | + | chr4_2:43881210-43881229 | None:intergenic | 35.0% | |
| GAGTTTGTCTACATCAGTTA+AGG | - | chr4_2:43881446-43881465 | Msa0601290:intron | 35.0% | |
| GTTAACAAATGACAACCCAA+AGG | + | chr4_2:43881643-43881662 | None:intergenic | 35.0% | |
| ! | TATACCGCTATAGCGTTTTT+GGG | + | chr4_2:43881806-43881825 | None:intergenic | 35.0% |
| GGAACTTAGAATTGAAGATG+AGG | + | chr4_2:43882117-43882136 | None:intergenic | 35.0% | |
| GATAATATTGATGCATGTGG+TGG | + | chr4_2:43882138-43882157 | None:intergenic | 35.0% | |
| AGATTGCTATAGCGAATATC+AGG | - | chr4_2:43882237-43882256 | Msa0601290:intron | 35.0% | |
| TTGGTGTGTTCACATGATAT+AGG | - | chr4_2:43882389-43882408 | Msa0601290:intron | 35.0% | |
| TACTAAAGGCAGACACTTTA+TGG | - | chr4_2:43882449-43882468 | Msa0601290:intron | 35.0% | |
| ATAAGTACCACCCGTTTATT+AGG | - | chr4_2:43882516-43882535 | Msa0601290:intron | 35.0% | |
| TCAATTTCCTAATAAACGGG+TGG | + | chr4_2:43882526-43882545 | None:intergenic | 35.0% | |
| TATGAAGTAACATAGAGCCA+TGG | - | chr4_2:43882791-43882810 | Msa0601290:intron | 35.0% | |
| ATGAAGTAACATAGAGCCAT+GGG | - | chr4_2:43882792-43882811 | Msa0601290:intron | 35.0% | |
| GTTCATCATCATATTGTGAG+AGG | + | chr4_2:43883040-43883059 | None:intergenic | 35.0% | |
| CGAATCGTATTCCAAACATA+TGG | - | chr4_2:43883107-43883126 | Msa0601290:intron | 35.0% | |
| AAATCATTGGCCCATATGTT+TGG | + | chr4_2:43883121-43883140 | None:intergenic | 35.0% | |
| ATTAGTGTTAGACCCATATC+CGG | + | chr4_2:43883206-43883225 | None:intergenic | 35.0% | |
| AGTTCAAACACATTCTGCTA+TGG | - | chr4_2:43883345-43883364 | Msa0601290:intron | 35.0% | |
| AACACATTCTGCTATGGTTA+TGG | - | chr4_2:43883351-43883370 | Msa0601290:intron | 35.0% | |
| ! | ACAAAAGCATATTTCGGGAT+GGG | + | chr4_2:43883394-43883413 | None:intergenic | 35.0% |
| ! | AAAAGGTATATAACCCCCAA+AGG | + | chr4_2:43883744-43883763 | None:intergenic | 35.0% |
| ! | TGGGGGTTATATACCTTTTA+AGG | - | chr4_2:43883745-43883764 | Msa0601290:intron | 35.0% |
| CGTTTAGTAGAAATAGGAAG+TGG | + | chr4_2:43883865-43883884 | None:intergenic | 35.0% | |
| !! | TGTGACAAAAAGAAAGTGTC+GGG | + | chr4_2:43883981-43884000 | None:intergenic | 35.0% |
| ! | TAAAAGTGTGTGATAGTTGC+AGG | + | chr4_2:43884102-43884121 | None:intergenic | 35.0% |
| AGTGACAAATACCGGAATTA+TGG | - | chr4_2:43884312-43884331 | Msa0601290:intron | 35.0% | |
| AGGATTGAAGATTTCAGTTG+TGG | - | chr4_2:43884415-43884434 | Msa0601290:intron | 35.0% | |
| ! | TATGATGGAATAAAGCAGAG+TGG | + | chr4_2:43884503-43884522 | None:intergenic | 35.0% |
| ATTCCATCATACTGTTAGCA+TGG | - | chr4_2:43884512-43884531 | Msa0601290:intron | 35.0% | |
| AATCCATGCTAACAGTATGA+TGG | + | chr4_2:43884518-43884537 | None:intergenic | 35.0% | |
| CATTTGGTATTCATTGGCAA+TGG | - | chr4_2:43884637-43884656 | Msa0601290:intron | 35.0% | |
| ATATCAAGTAAGAACCGTGA+AGG | - | chr4_2:43884743-43884762 | Msa0601290:five_prime_UTR | 35.0% | |
| ATTCTAAACCCTTCCTTCAC+GGG | + | chr4_2:43879607-43879626 | None:intergenic | 40.0% | |
| GAAAGGAAGCAAAAGAAGTG+TGG | + | chr4_2:43879655-43879674 | None:intergenic | 40.0% | |
| AGAGTGAAGGTTCGATAGAA+AGG | + | chr4_2:43879672-43879691 | None:intergenic | 40.0% | |
| AGTACATTAACAAAAGGGGG+AGG | - | chr4_2:43880037-43880056 | Msa0601290:CDS | 40.0% | |
| TTAACAAAAGGGGGAGGATA+TGG | - | chr4_2:43880043-43880062 | Msa0601290:CDS | 40.0% | |
| CAGCAAGATTTGCATCTAGA+AGG | - | chr4_2:43880237-43880256 | Msa0601290:intron | 40.0% | |
| TCTAGAAGGCTATTTAGCAG+TGG | - | chr4_2:43880251-43880270 | Msa0601290:intron | 40.0% | |
| TGCGGAAAATGCTTACTTCA+AGG | - | chr4_2:43880307-43880326 | Msa0601290:intron | 40.0% | |
| ! | TCGTAATTGCTATCGGTTGA+AGG | - | chr4_2:43880386-43880405 | Msa0601290:intron | 40.0% |
| CGGATTCTCTGTCATTCTAA+TGG | - | chr4_2:43880612-43880631 | Msa0601290:intron | 40.0% | |
| TGAGCTGTATGTATGATCTC+TGG | - | chr4_2:43880662-43880681 | Msa0601290:intron | 40.0% | |
| ACACAATGAAGGCAACTCAA+AGG | + | chr4_2:43881042-43881061 | None:intergenic | 40.0% | |
| ! | TTGAGTTGCCTTCATTGTGT+TGG | - | chr4_2:43881042-43881061 | Msa0601290:intron | 40.0% |
| TGAGTTGCCTTCATTGTGTT+GGG | - | chr4_2:43881043-43881062 | Msa0601290:intron | 40.0% | |
| CTTCAAACCCAACACAATGA+AGG | + | chr4_2:43881053-43881072 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTTTGA+AGG | - | chr4_2:43881051-43881070 | Msa0601290:intron | 40.0% | |
| TCATTGTGTTGGGTTTGAAG+GGG | - | chr4_2:43881053-43881072 | Msa0601290:intron | 40.0% | |
| CTAACACATCCCTACAAAAC+CGG | + | chr4_2:43881155-43881174 | None:intergenic | 40.0% | |
| TGAGCAGCAATCTACTTTCT+AGG | + | chr4_2:43881318-43881337 | None:intergenic | 40.0% | |
| GTAAGTACCACAAATGGAAC+CGG | + | chr4_2:43881482-43881501 | None:intergenic | 40.0% | |
| GGGTGGAAAAATGATGAATC+AGG | - | chr4_2:43881717-43881736 | Msa0601290:intron | 40.0% | |
| AAACCCCAAAAACGCTATAG+CGG | - | chr4_2:43881799-43881818 | Msa0601290:intron | 40.0% | |
| ! | ATACCGCTATAGCGTTTTTG+GGG | + | chr4_2:43881805-43881824 | None:intergenic | 40.0% |
| ! | CTATACCGCTATAGCGTTTT+TGG | + | chr4_2:43881807-43881826 | None:intergenic | 40.0% |
| AAAACGCTATAGCGGTATAG+AGG | - | chr4_2:43881807-43881826 | Msa0601290:intron | 40.0% | |
| TATAGCGGTATAGAGGATTG+TGG | - | chr4_2:43881814-43881833 | Msa0601290:intron | 40.0% | |
| ATAGCGGTATAGAGGATTGT+GGG | - | chr4_2:43881815-43881834 | Msa0601290:intron | 40.0% | |
| TAGAATTGAAGATGAGGCAG+CGG | + | chr4_2:43882111-43882130 | None:intergenic | 40.0% | |
| AGCAGAATGTGTTTGAACTG+TGG | + | chr4_2:43883344-43883363 | None:intergenic | 40.0% | |
| ! | GACAAAAGCATATTTCGGGA+TGG | + | chr4_2:43883395-43883414 | None:intergenic | 40.0% |
| AAATGTGATAAGTGGTGTGG+TGG | + | chr4_2:43884043-43884062 | None:intergenic | 40.0% | |
| GTGAAATGTGATAAGTGGTG+TGG | + | chr4_2:43884046-43884065 | None:intergenic | 40.0% | |
| AGAGCGTGAAATGTGATAAG+TGG | + | chr4_2:43884051-43884070 | None:intergenic | 40.0% | |
| TCTGGACATTCTGATACATC+AGG | - | chr4_2:43884276-43884295 | Msa0601290:intron | 40.0% | |
| CAGCTACAACTCCATAATTC+CGG | + | chr4_2:43884326-43884345 | None:intergenic | 40.0% | |
| !!! | CAATTTTTGCTGCTTTAGGG+TGG | - | chr4_2:43884355-43884374 | Msa0601290:intron | 40.0% |
| !!! | ATGCGTGAATTTTTGGTGGC+TGG | - | chr4_2:43879908-43879927 | Msa0601290:three_prime_UTR | 45.0% |
| AACTGACAGCAATGGCAACA+CGG | - | chr4_2:43880210-43880229 | Msa0601290:intron | 45.0% | |
| GTCCTGACACCTCTAATCAA+AGG | - | chr4_2:43880413-43880432 | Msa0601290:intron | 45.0% | |
| !! | TGCCTTTGATTAGAGGTGTC+AGG | + | chr4_2:43880418-43880437 | None:intergenic | 45.0% |
| CTGGACATGCCTTTGATTAG+AGG | + | chr4_2:43880425-43880444 | None:intergenic | 45.0% | |
| GTCCAGTGTTCAACATGTGT+CGG | - | chr4_2:43880439-43880458 | Msa0601290:intron | 45.0% | |
| AGAGAATCCGGAACATGCAA+TGG | + | chr4_2:43880602-43880621 | None:intergenic | 45.0% | |
| TTTCTCCTCAACATGCACAG+AGG | + | chr4_2:43880849-43880868 | None:intergenic | 45.0% | |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | + | chr4_2:43881140-43881159 | None:intergenic | 45.0% |
| !! | ACCTTACAAGCCGGTTTTGT+AGG | - | chr4_2:43881142-43881161 | Msa0601290:intron | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+GGG | - | chr4_2:43881143-43881162 | Msa0601290:intron | 45.0% |
| !! | CGGTTTTGTAGGGATGTGTT+AGG | - | chr4_2:43881153-43881172 | Msa0601290:intron | 45.0% |
| TTGGGTCATAAGTCTTGCCT+TGG | - | chr4_2:43881216-43881235 | Msa0601290:intron | 45.0% | |
| TGGGTCATAAGTCTTGCCTT+GGG | - | chr4_2:43881217-43881236 | Msa0601290:intron | 45.0% | |
| GAAAGCTGAGCAAGAGAAGT+TGG | - | chr4_2:43881519-43881538 | Msa0601290:intron | 45.0% | |
| !!! | GCTATAGCGTTTTTGGGGTT+TGG | + | chr4_2:43881800-43881819 | None:intergenic | 45.0% |
| AAATGGAGATGAGGAGTTGG+AGG | + | chr4_2:43882197-43882216 | None:intergenic | 45.0% | |
| TCCAACTCCTCATCTCCATT+TGG | - | chr4_2:43882196-43882215 | Msa0601290:intron | 45.0% | |
| !! | AGCGGTGCTATTGACTACAT+TGG | - | chr4_2:43882370-43882389 | Msa0601290:intron | 45.0% |
| TATCATCAGACTGCAGCTGA+GGG | + | chr4_2:43882626-43882645 | None:intergenic | 45.0% | |
| ATATCATCAGACTGCAGCTG+AGG | + | chr4_2:43882627-43882646 | None:intergenic | 45.0% | |
| GTGGAGATTGCATAACTTCG+TGG | - | chr4_2:43883419-43883438 | Msa0601290:intron | 45.0% | |
| AACCACTCTCCTTTGACTGT+TGG | - | chr4_2:43883686-43883705 | Msa0601290:intron | 45.0% | |
| ATCCAACAGTCAAAGGAGAG+TGG | + | chr4_2:43883691-43883710 | None:intergenic | 45.0% | |
| CTGCAAGATCCAACAGTCAA+AGG | + | chr4_2:43883698-43883717 | None:intergenic | 45.0% | |
| AGGTATATAACCCCCAAAGG+TGG | + | chr4_2:43883741-43883760 | None:intergenic | 45.0% | |
| !! | AGAGCTACTTGGTTTGGCAT+CGG | + | chr4_2:43884259-43884278 | None:intergenic | 45.0% |
| ATGTCCAGAGCTACTTGGTT+TGG | + | chr4_2:43884265-43884284 | None:intergenic | 45.0% | |
| TCAGAATGTCCAGAGCTACT+TGG | + | chr4_2:43884270-43884289 | None:intergenic | 45.0% | |
| CGGAATTATGGAGTTGTAGC+TGG | - | chr4_2:43884324-43884343 | Msa0601290:intron | 45.0% | |
| !! | GCTTTAGGGTGGTACCTTAA+AGG | - | chr4_2:43884366-43884385 | Msa0601290:intron | 45.0% |
| GCTTCTTTGCAGTGCCTTTA+AGG | + | chr4_2:43884383-43884402 | None:intergenic | 45.0% | |
| !! | TAAAGGCACTGCAAAGAAGC+CGG | - | chr4_2:43884383-43884402 | Msa0601290:intron | 45.0% |
| GAATCAGTGCACACTAGTGT+TGG | - | chr4_2:43884709-43884728 | Msa0601290:five_prime_UTR | 45.0% | |
| !!! | AATAACAATATTTTTTAAAA+AGG | - | chr4_2:43880782-43880801 | Msa0601290:intron | 5.0% |
| CCAGATTGTGTTGAGAGGAG+AGG | + | chr4_2:43879697-43879716 | None:intergenic | 50.0% | |
| CCTCTCCTCTCAACACAATC+TGG | - | chr4_2:43879694-43879713 | Msa0601290:three_prime_UTR | 50.0% | |
| ACTGACAGCAATGGCAACAC+GGG | - | chr4_2:43880211-43880230 | Msa0601290:intron | 50.0% | |
| AGGCTATTTAGCAGTGGCTC+TGG | - | chr4_2:43880257-43880276 | Msa0601290:intron | 50.0% | |
| GGCTATTTAGCAGTGGCTCT+GGG | - | chr4_2:43880258-43880277 | Msa0601290:intron | 50.0% | |
| !! | AGTGGCTCTGGGAAAGTTCT+TGG | - | chr4_2:43880269-43880288 | Msa0601290:intron | 50.0% |
| ! | CTCTGGGAAAGTTCTTGGTG+AGG | - | chr4_2:43880274-43880293 | Msa0601290:intron | 50.0% |
| TGGGAAAGTTCTTGGTGAGG+AGG | - | chr4_2:43880277-43880296 | Msa0601290:intron | 50.0% | |
| TGGTGAGGAGGAAAAAGCTG+CGG | - | chr4_2:43880289-43880308 | Msa0601290:intron | 50.0% | |
| CACCGACACATGTTGAACAC+TGG | + | chr4_2:43880444-43880463 | None:intergenic | 50.0% | |
| TGCATCCTCTGTGCATGTTG+AGG | - | chr4_2:43880841-43880860 | Msa0601290:intron | 50.0% | |
| TTGTGTTGGGTTTGAAGGGG+TGG | - | chr4_2:43881056-43881075 | Msa0601290:intron | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr4_2:43881141-43881160 | None:intergenic | 50.0% |
| !! | CCCTACAAAACCGGCTTGTA+AGG | + | chr4_2:43881146-43881165 | None:intergenic | 50.0% |
| CAGTTAAGGTCTGTGCTTGC+CGG | - | chr4_2:43881460-43881479 | Msa0601290:intron | 50.0% | |
| GCCAAATGGAGATGAGGAGT+TGG | + | chr4_2:43882200-43882219 | None:intergenic | 50.0% | |
| AGCTGTGCCAAATGGAGATG+AGG | + | chr4_2:43882206-43882225 | None:intergenic | 50.0% | |
| GTCACTACAGCTGTGCCAAA+TGG | + | chr4_2:43882214-43882233 | None:intergenic | 50.0% | |
| GTTGTCACGGCTGCAAATTG+CGG | + | chr4_2:43882267-43882286 | None:intergenic | 50.0% | |
| TTCAGCAGTGGCAGTTGTCA+CGG | + | chr4_2:43882280-43882299 | None:intergenic | 50.0% | |
| ATAGCGCGCTAGAGTGGAAT+AGG | + | chr4_2:43882350-43882369 | None:intergenic | 50.0% | |
| ! | TCCCTTTTCTTCGCCACCTT+TGG | - | chr4_2:43883725-43883744 | Msa0601290:intron | 50.0% |
| CCCAAAGGTGGCGAAGAAAA+GGG | + | chr4_2:43883729-43883748 | None:intergenic | 50.0% | |
| ! | CCCTTTTCTTCGCCACCTTT+GGG | - | chr4_2:43883726-43883745 | Msa0601290:intron | 50.0% |
| ! | CCTTTTCTTCGCCACCTTTG+GGG | - | chr4_2:43883727-43883746 | Msa0601290:intron | 50.0% |
| ! | CTTTTCTTCGCCACCTTTGG+GGG | - | chr4_2:43883728-43883747 | Msa0601290:intron | 50.0% |
| GATGCCAAACCAAGTAGCTC+TGG | - | chr4_2:43884258-43884277 | Msa0601290:intron | 50.0% | |
| CTTCAATCCTCCTGCACTTC+CGG | + | chr4_2:43884405-43884424 | None:intergenic | 50.0% | |
| GAGAGGAGAGGTGAGAGTGA+AGG | + | chr4_2:43879685-43879704 | None:intergenic | 55.0% | |
| CATGCACAGAGGATGCAGAG+TGG | + | chr4_2:43880838-43880857 | None:intergenic | 55.0% | |
| GCAACCCTCACCTTACAAGC+CGG | - | chr4_2:43881133-43881152 | Msa0601290:intron | 55.0% | |
| !! | GTGCTTGCCGGTTCCATTTG+TGG | - | chr4_2:43881472-43881491 | Msa0601290:intron | 55.0% |
| ! | GTTGGAGAAGCTTGCTCGCA+AGG | - | chr4_2:43881537-43881556 | Msa0601290:intron | 55.0% |
| GGCGCTATGCACCACTATCT+AGG | + | chr4_2:43881779-43881798 | None:intergenic | 55.0% | |
| TGGAGATGAGGAGTTGGAGG+TGG | + | chr4_2:43882194-43882213 | None:intergenic | 55.0% | |
| GTGACAACTGCCACTGCTGA+AGG | - | chr4_2:43882279-43882298 | Msa0601290:intron | 55.0% | |
| ACAACTGCCACTGCTGAAGG+TGG | - | chr4_2:43882282-43882301 | Msa0601290:intron | 55.0% | |
| GGAATAGGAGGGCAGTGGTA+GGG | + | chr4_2:43882335-43882354 | None:intergenic | 55.0% | |
| TGGAATAGGAGGGCAGTGGT+AGG | + | chr4_2:43882336-43882355 | None:intergenic | 55.0% | |
| AGAGTGGAATAGGAGGGCAG+TGG | + | chr4_2:43882340-43882359 | None:intergenic | 55.0% | |
| CGCGCTAGAGTGGAATAGGA+GGG | + | chr4_2:43882346-43882365 | None:intergenic | 55.0% | |
| TCCACTCTAGCGCGCTATAG+CGG | - | chr4_2:43882352-43882371 | Msa0601290:intron | 55.0% | |
| CCCCAAAGGTGGCGAAGAAA+AGG | + | chr4_2:43883730-43883749 | None:intergenic | 55.0% | |
| !! | GCTGGTGTTGCTTCTGGTTG+AGG | + | chr4_2:43884213-43884232 | None:intergenic | 55.0% |
| AGCAACACCAGCTGCAGGTT+CGG | - | chr4_2:43884221-43884240 | Msa0601290:intron | 55.0% | |
| ! | TGCAAAGAAGCCGGAAGTGC+AGG | - | chr4_2:43884392-43884411 | Msa0601290:intron | 55.0% |
| ! | AAAGAAGCCGGAAGTGCAGG+AGG | - | chr4_2:43884395-43884414 | Msa0601290:intron | 55.0% |
| GACAGCAATGGCAACACGGG+TGG | - | chr4_2:43880214-43880233 | Msa0601290:intron | 60.0% | |
| GAAGATGAGGCAGCGGCATG+CGG | + | chr4_2:43882104-43882123 | None:intergenic | 60.0% | |
| ACTGCTGAAGGTGGCTCGCA+GGG | - | chr4_2:43882291-43882310 | Msa0601290:intron | 60.0% | |
| AGGAGGGCAGTGGTAGGGTT+TGG | + | chr4_2:43882330-43882349 | None:intergenic | 60.0% | |
| GCGCGCTAGAGTGGAATAGG+AGG | + | chr4_2:43882347-43882366 | None:intergenic | 60.0% | |
| ACCGCTATAGCGCGCTAGAG+TGG | + | chr4_2:43882356-43882375 | None:intergenic | 60.0% | |
| !! | CCTGCAGCTGGTGTTGCTTC+TGG | + | chr4_2:43884219-43884238 | None:intergenic | 60.0% |
| CCAGAAGCAACACCAGCTGC+AGG | - | chr4_2:43884216-43884235 | Msa0601290:intron | 60.0% | |
| GCAACACCAGCTGCAGGTTC+GGG | - | chr4_2:43884222-43884241 | Msa0601290:intron | 60.0% | |
| CTGCGAGCCACCTTCAGCAG+TGG | + | chr4_2:43882292-43882311 | None:intergenic | 65.0% | |
| CACTGCTGAAGGTGGCTCGC+AGG | - | chr4_2:43882290-43882309 | Msa0601290:intron | 65.0% | |
| GAAGGTGGCTCGCAGGGAGA+TGG | - | chr4_2:43882297-43882316 | Msa0601290:intron | 65.0% | |
| GGCAGTGGTAGGGTTTGGCG+CGG | + | chr4_2:43882325-43882344 | None:intergenic | 65.0% | |
| ACACCAGCTGCAGGTTCGGG+TGG | - | chr4_2:43884225-43884244 | Msa0601290:intron | 65.0% | |
| GAACCACCCGAACCTGCAGC+TGG | + | chr4_2:43884231-43884250 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 43879597 | 43884793 | 43879597 | ID=Msa0601290;Name=Msa0601290 |
| chr4_2 | mRNA | 43879597 | 43884793 | 43879597 | ID=Msa0601290-mRNA-1;Parent=Msa0601290;Name=Msa0601290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=147|1|1|1|0.66|0.5|4|371|120 |
| chr4_2 | exon | 43879597 | 43880183 | 43879597 | ID=Msa0601290-mRNA-1:exon:9598;Parent=Msa0601290-mRNA-1 |
| chr4_2 | exon | 43882832 | 43882870 | 43882832 | ID=Msa0601290-mRNA-1:exon:9597;Parent=Msa0601290-mRNA-1 |
| chr4_2 | exon | 43884062 | 43884197 | 43884062 | ID=Msa0601290-mRNA-1:exon:9596;Parent=Msa0601290-mRNA-1 |
| chr4_2 | exon | 43884675 | 43884793 | 43884675 | ID=Msa0601290-mRNA-1:exon:9595;Parent=Msa0601290-mRNA-1 |
| chr4_2 | five_prime_UTR | 43884675 | 43884793 | 43884675 | ID=Msa0601290-mRNA-1:five_prime_utr;Parent=Msa0601290-mRNA-1 |
| chr4_2 | five_prime_UTR | 43884170 | 43884197 | 43884170 | ID=Msa0601290-mRNA-1:five_prime_utr;Parent=Msa0601290-mRNA-1 |
| chr4_2 | CDS | 43884062 | 43884169 | 43884062 | ID=Msa0601290-mRNA-1:cds;Parent=Msa0601290-mRNA-1 |
| chr4_2 | CDS | 43882832 | 43882870 | 43882832 | ID=Msa0601290-mRNA-1:cds;Parent=Msa0601290-mRNA-1 |
| chr4_2 | CDS | 43879968 | 43880183 | 43879968 | ID=Msa0601290-mRNA-1:cds;Parent=Msa0601290-mRNA-1 |
| chr4_2 | three_prime_UTR | 43879597 | 43879967 | 43879597 | ID=Msa0601290-mRNA-1:three_prime_utr;Parent=Msa0601290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
