AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706380 MtrunA17_Chr8g0385691 99.324 148 1 0 1 148 49 196 3.43e-107 305
Msa0706380 MtrunA17_Chr8g0385681 91.156 147 13 0 1 147 52 198 6.92e-98 282
Msa0706380 MtrunA17_Chr3g0131581 70.068 147 44 0 1 147 69 215 2.35e-78 233
Msa0706380 MtrunA17_Chr1g0161441 44.667 150 77 3 2 146 32 180 3.65e-37 127
Msa0706380 MtrunA17_Chr4g0058811 30.405 148 101 2 1 147 73 219 1.51e-21 87.4
Msa0706380 MtrunA17_Chr4g0058791 29.054 148 103 2 1 147 71 217 2.06e-21 86.7
Msa0706380 MtrunA17_Chr1g0155071 32.215 149 96 4 2 148 46 191 2.98e-21 87.0
Msa0706380 MtrunA17_Chr3g0115591 30.612 147 98 4 2 147 52 195 3.82e-17 76.3
Msa0706380 MtrunA17_Chr5g0425421 30.345 145 96 4 2 145 49 189 1.12e-14 69.7
Msa0706380 MtrunA17_Chr1g0205531 26.351 148 107 2 2 148 42 188 6.89e-14 67.4
Msa0706380 MtrunA17_Chr7g0254621 28.276 145 99 4 2 145 47 187 3.46e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706380 AT1G01630.1 62.585 147 55 0 1 147 52 198 5.22e-68 206
Msa0706380 AT1G14820.2 44.295 149 77 3 2 145 18 165 2.12e-32 115
Msa0706380 AT1G14820.1 44.295 149 77 3 2 145 18 165 2.12e-32 115
Msa0706380 AT1G14820.3 44.000 150 78 3 1 145 30 178 2.34e-32 115
Msa0706380 AT4G36640.1 33.557 149 94 4 2 148 44 189 3.08e-19 82.0
Msa0706380 AT4G36640.3 33.557 149 94 4 2 148 44 189 3.08e-19 82.0
Msa0706380 AT5G63060.2 30.872 149 101 2 1 148 39 186 3.47e-19 80.9
Msa0706380 AT5G63060.1 32.450 151 96 3 1 148 74 221 8.03e-19 80.5
Msa0706380 AT1G75170.2 30.201 149 99 4 2 148 47 192 2.59e-18 79.7
Msa0706380 AT1G75170.1 30.201 149 99 4 2 148 47 192 2.59e-18 79.7
Msa0706380 AT4G08690.2 30.345 145 97 3 2 145 46 187 3.13e-18 79.3
Msa0706380 AT4G08690.1 30.345 145 97 3 2 145 46 187 3.13e-18 79.3
Msa0706380 AT4G08690.3 30.345 145 97 3 2 145 46 187 3.13e-18 79.3
Msa0706380 AT1G22180.2 28.378 148 102 3 2 148 49 193 6.77e-13 64.7
Msa0706380 AT1G22180.4 28.378 148 102 3 2 148 49 193 6.77e-13 64.7
Msa0706380 AT4G36640.2 30.233 129 85 4 19 145 1 126 9.17e-12 60.8
Msa0706380 AT1G05370.1 26.207 145 106 1 4 148 47 190 1.73e-11 61.2

Find 65 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTCCCCAATCTTTC+AGG 0.132673 4_4:-79348769 None:intergenic
CGCAACAGCTCCTTCTCTTT+TGG 0.243312 4_4:+79349602 Msa0706380:three_prime_UTR
CTTGATTTCTAATTTCTTGT+AGG 0.255904 4_4:+79349434 Msa0706380:three_prime_UTR
ATCAACATCAATGGTTAATA+TGG 0.256203 4_4:-79349237 None:intergenic
CGACCAATACTTCTTGTCTT+TGG 0.277733 4_4:+79347800 Msa0706380:CDS
GAGTCCATTAGTAATTTAAT+TGG 0.307515 4_4:+79349544 Msa0706380:three_prime_UTR
TTGTCTTGTGCAATTTGATT+AGG 0.316642 4_4:-79347746 None:intergenic
TAATCAGCACTGGCAAATTA+AGG 0.316967 4_4:+79349103 Msa0706380:three_prime_UTR
ACTTGTTACAATGAGTTTCT+TGG 0.323539 4_4:+79349371 Msa0706380:three_prime_UTR
CTTGTTACAATGAGTTTCTT+GGG 0.334872 4_4:+79349372 Msa0706380:three_prime_UTR
TGAGCCAATTAAATTACTAA+TGG 0.348005 4_4:-79349548 None:intergenic
ATAACGATATACCTGCAAAA+TGG 0.361491 4_4:-79348656 None:intergenic
GACCAATCTTGTCATGTCCT+TGG 0.383685 4_4:-79347778 None:intergenic
AGTCAACTTCCGGAGATATA+CGG 0.395789 4_4:+79349038 Msa0706380:three_prime_UTR
CTCCTTGCAGATAGTATTTG+TGG 0.396500 4_4:+79348971 Msa0706380:intron
GGATTACTACCCTGAAAGAT+TGG 0.396743 4_4:+79348759 Msa0706380:intron
TGTTCCTCAAGTACTTGAAA+TGG 0.405903 4_4:+79347678 Msa0706380:CDS
AGACATTCATTTGTTCCAAA+TGG 0.425215 4_4:+79347701 Msa0706380:CDS
GATTACTACCCTGAAAGATT+GGG 0.426754 4_4:+79348760 Msa0706380:CDS
GATAGAGATATGGAACCATT+TGG 0.426836 4_4:-79347716 None:intergenic
CTACAAGAAATTAGAAATCA+AGG 0.434717 4_4:-79349433 None:intergenic
ACCAATCTTGTCATGTCCTT+GGG 0.434729 4_4:-79347777 None:intergenic
CCAATACTTCTTGTCTTTGG+TGG 0.439235 4_4:+79347803 Msa0706380:CDS
TATAGACGAAAGTCAACTTC+CGG 0.447855 4_4:+79349028 Msa0706380:three_prime_UTR
GATTAGTTTAATAGCTATCC+TGG 0.451945 4_4:-79349085 None:intergenic
AGGAACCTGTGATAGAGATA+TGG 0.459166 4_4:-79347726 None:intergenic
ACAACTTCCCCAATCTTTCA+GGG 0.493166 4_4:-79348768 None:intergenic
CCACACTTTCATAAAATGTA+CGG 0.506385 4_4:-79348805 None:intergenic
CCATTGATGTTGATCAGTCA+TGG 0.513185 4_4:+79349246 Msa0706380:three_prime_UTR
GTTTAATAGCTATCCTGGAT+GGG 0.515671 4_4:-79349080 None:intergenic
AGTTTAATAGCTATCCTGGA+TGG 0.519602 4_4:-79349081 None:intergenic
CTTGTCATGTCCTTGGGCGA+AGG 0.521048 4_4:-79347771 None:intergenic
AGCGATTTGCGTGGATACAT+TGG 0.523132 4_4:+79348625 Msa0706380:CDS
CCACCAAAGACAAGAAGTAT+TGG 0.525066 4_4:-79347803 None:intergenic
GCCCAAGGACATGACAAGAT+TGG 0.525216 4_4:+79347776 Msa0706380:CDS
GCTATTAAACTAATCAGCAC+TGG 0.538907 4_4:+79349093 Msa0706380:three_prime_UTR
TTCATAAAATGTACGGTGCG+TGG 0.542815 4_4:-79348798 None:intergenic
CCATGACTGATCAACATCAA+TGG 0.546840 4_4:-79349246 None:intergenic
TGACAACAAAACTAAGAAGA+AGG 0.549893 4_4:+79348848 Msa0706380:three_prime_UTR
GTCTCCATTTCAAGTACTTG+AGG 0.552376 4_4:-79347682 None:intergenic
AGTTTGCCACCGTATATCTC+CGG 0.556856 4_4:-79349047 None:intergenic
TGATGTATCAGCATGCCACC+TGG 0.557220 4_4:+79348550 Msa0706380:intron
TTTAATAGCTATCCTGGATG+GGG 0.558711 4_4:-79349079 None:intergenic
ACTGCAATTAGTCCCCATCC+AGG 0.559870 4_4:+79349067 Msa0706380:three_prime_UTR
TGGTTCCATATCTCTATCAC+AGG 0.560409 4_4:+79347721 Msa0706380:CDS
CAAGACAAGGCCTTCGCCCA+AGG 0.561144 4_4:+79347761 Msa0706380:CDS
CCAACCACCACCAAAAGAGA+AGG 0.567447 4_4:-79349612 None:intergenic
TATAGCAGAACTCAAAGGAT+GGG 0.572999 4_4:+79348591 Msa0706380:CDS
TACAAGAAATTAGAAATCAA+GGG 0.581251 4_4:-79349432 None:intergenic
TACTTAAACGAAAATAGTCA+AGG 0.594381 4_4:-79349168 None:intergenic
GTATAGCAGAACTCAAAGGA+TGG 0.600715 4_4:+79348590 Msa0706380:CDS
GATGTATCAGCATGCCACCT+GGG 0.601615 4_4:+79348551 Msa0706380:intron
TAATCAAATTGCACAAGACA+AGG 0.608427 4_4:+79347748 Msa0706380:CDS
TCGTGATTTAGATGTAGAGA+AGG 0.617213 4_4:+79347646 Msa0706380:CDS
GTTGGTATAGCAGAACTCAA+AGG 0.623693 4_4:+79348586 Msa0706380:CDS
TTCTTGATAAACTATGTGCA+AGG 0.626670 4_4:+79348457 Msa0706380:CDS
TACTCAAATAGCGATTTGCG+TGG 0.626951 4_4:+79348616 Msa0706380:CDS
ATTACTACCCTGAAAGATTG+GGG 0.630792 4_4:+79348761 Msa0706380:CDS
ATGTATCAGCATGCCACCTG+GGG 0.634138 4_4:+79348552 Msa0706380:intron
CTATTAGACTGATAGTTCAG+TGG 0.636665 4_4:+79349209 Msa0706380:three_prime_UTR
ATAGCAGAACTCAAAGGATG+GGG 0.636851 4_4:+79348592 Msa0706380:CDS
ATATACCTGCAAAATGGAGA+GGG 0.661917 4_4:-79348650 None:intergenic
GAATGATGTGTGACTGAGTG+CGG 0.676356 4_4:+79349473 Msa0706380:three_prime_UTR
GATATACCTGCAAAATGGAG+AGG 0.677136 4_4:-79348651 None:intergenic
CAACTTCCGGAGATATACGG+TGG 0.731093 4_4:+79349041 Msa0706380:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTTAAAAAAAAGTAAA+TGG - chr4_4:79348209-79348228 None:intergenic 10.0%
!! TTATGTTAAAAAAAAGTAAA+TGG - chr4_4:79348209-79348228 None:intergenic 10.0%
!! TTTAATGTTAACTAGATATA+GGG - chr4_4:79347917-79347936 None:intergenic 15.0%
!! ATTTAATGTTAACTAGATAT+AGG - chr4_4:79347918-79347937 None:intergenic 15.0%
!! GTTTAAGTAAATAAAAAGAT+AGG + chr4_4:79349182-79349201 Msa0706380:three_prime_UTR 15.0%
!! TTTAATGTTAACTAGATATA+GGG - chr4_4:79347917-79347936 None:intergenic 15.0%
!! ATTTAATGTTAACTAGATAT+AGG - chr4_4:79347918-79347937 None:intergenic 15.0%
!! GTTTAAGTAAATAAAAAGAT+AGG + chr4_4:79349182-79349201 Msa0706380:three_prime_UTR 15.0%
!! ATTATGTAATGTTTAATTCC+TGG + chr4_4:79348318-79348337 Msa0706380:intron 20.0%
!! GATTATGATTGTTAATTTCT+TGG + chr4_4:79348731-79348750 Msa0706380:intron 20.0%
!! ATTATATATATCTCATTGCA+TGG + chr4_4:79348886-79348905 Msa0706380:intron 20.0%
!! TACAAGAAATTAGAAATCAA+GGG - chr4_4:79349435-79349454 None:intergenic 20.0%
!! ATTATGTAATGTTTAATTCC+TGG + chr4_4:79348318-79348337 Msa0706380:intron 20.0%
!! GATTATGATTGTTAATTTCT+TGG + chr4_4:79348731-79348750 Msa0706380:intron 20.0%
!! ATTATATATATCTCATTGCA+TGG + chr4_4:79348886-79348905 Msa0706380:intron 20.0%
!! TACAAGAAATTAGAAATCAA+GGG - chr4_4:79349435-79349454 None:intergenic 20.0%
! ATTGGTTAAGAATATGTACT+TGG + chr4_4:79347968-79347987 Msa0706380:intron 25.0%
! GAATTTGTGCAATAATCATT+TGG + chr4_4:79348113-79348132 Msa0706380:intron 25.0%
! ATCTCTATTTGAGTATTAGA+GGG + chr4_4:79348141-79348160 Msa0706380:intron 25.0%
!!! TAGTATGTAATATTGGTTTG+TGG + chr4_4:79348344-79348363 Msa0706380:intron 25.0%
! TTGAGAAAATTGTTAATGAG+TGG - chr4_4:79348395-79348414 None:intergenic 25.0%
!!! AGTTTTATAGTACTGGAATA+AGG - chr4_4:79348492-79348511 None:intergenic 25.0%
!!! ATTTCACAGTTTTATAGTAC+TGG - chr4_4:79348499-79348518 None:intergenic 25.0%
!!! TTAGTTTTGTTGTCAATGAA+CGG - chr4_4:79348843-79348862 None:intergenic 25.0%
! TACTTAAACGAAAATAGTCA+AGG - chr4_4:79349171-79349190 None:intergenic 25.0%
! ATCAACATCAATGGTTAATA+TGG - chr4_4:79349240-79349259 None:intergenic 25.0%
! CTACAAGAAATTAGAAATCA+AGG - chr4_4:79349436-79349455 None:intergenic 25.0%
! CTTGATTTCTAATTTCTTGT+AGG + chr4_4:79349434-79349453 Msa0706380:three_prime_UTR 25.0%
! GAGTCCATTAGTAATTTAAT+TGG + chr4_4:79349544-79349563 Msa0706380:three_prime_UTR 25.0%
! TGAGCCAATTAAATTACTAA+TGG - chr4_4:79349551-79349570 None:intergenic 25.0%
! ATTGGTTAAGAATATGTACT+TGG + chr4_4:79347968-79347987 Msa0706380:intron 25.0%
! GAATTTGTGCAATAATCATT+TGG + chr4_4:79348113-79348132 Msa0706380:intron 25.0%
! ATCTCTATTTGAGTATTAGA+GGG + chr4_4:79348141-79348160 Msa0706380:intron 25.0%
!!! TAGTATGTAATATTGGTTTG+TGG + chr4_4:79348344-79348363 Msa0706380:intron 25.0%
! TTGAGAAAATTGTTAATGAG+TGG - chr4_4:79348395-79348414 None:intergenic 25.0%
!!! AGTTTTATAGTACTGGAATA+AGG - chr4_4:79348492-79348511 None:intergenic 25.0%
!!! ATTTCACAGTTTTATAGTAC+TGG - chr4_4:79348499-79348518 None:intergenic 25.0%
!!! TTAGTTTTGTTGTCAATGAA+CGG - chr4_4:79348843-79348862 None:intergenic 25.0%
! TACTTAAACGAAAATAGTCA+AGG - chr4_4:79349171-79349190 None:intergenic 25.0%
! ATCAACATCAATGGTTAATA+TGG - chr4_4:79349240-79349259 None:intergenic 25.0%
! CTACAAGAAATTAGAAATCA+AGG - chr4_4:79349436-79349455 None:intergenic 25.0%
! CTTGATTTCTAATTTCTTGT+AGG + chr4_4:79349434-79349453 Msa0706380:three_prime_UTR 25.0%
! GAGTCCATTAGTAATTTAAT+TGG + chr4_4:79349544-79349563 Msa0706380:three_prime_UTR 25.0%
! TGAGCCAATTAAATTACTAA+TGG - chr4_4:79349551-79349570 None:intergenic 25.0%
AGACATTCATTTGTTCCAAA+TGG + chr4_4:79347701-79347720 Msa0706380:CDS 30.0%
TTGTCTTGTGCAATTTGATT+AGG - chr4_4:79347749-79347768 None:intergenic 30.0%
TAATCAAATTGCACAAGACA+AGG + chr4_4:79347748-79347767 Msa0706380:CDS 30.0%
! TGGAAGACATTTTCAAAAGA+AGG + chr4_4:79347823-79347842 Msa0706380:CDS 30.0%
! AGACATTTTCAAAAGAAGGA+TGG + chr4_4:79347827-79347846 Msa0706380:CDS 30.0%
TGTTAACTAGATATAGGGAT+AGG - chr4_4:79347912-79347931 None:intergenic 30.0%
!! TGAGAGATTTTAGCCATTAT+GGG - chr4_4:79348016-79348035 None:intergenic 30.0%
GATCTCTATTTGAGTATTAG+AGG + chr4_4:79348140-79348159 Msa0706380:intron 30.0%
! AAAAAGTAAATGGTAGCGAA+GGG - chr4_4:79348199-79348218 None:intergenic 30.0%
! AAAAAAGTAAATGGTAGCGA+AGG - chr4_4:79348200-79348219 None:intergenic 30.0%
! AGCAATTTTCTTTGTGATAC+AGG + chr4_4:79348420-79348439 Msa0706380:intron 30.0%
! GCAATTTTCTTTGTGATACA+GGG + chr4_4:79348421-79348440 Msa0706380:intron 30.0%
TTCTTGATAAACTATGTGCA+AGG + chr4_4:79348457-79348476 Msa0706380:CDS 30.0%
ATAACGATATACCTGCAAAA+TGG - chr4_4:79348659-79348678 None:intergenic 30.0%
ATTGTTAATTTCTTGGATGC+AGG + chr4_4:79348738-79348757 Msa0706380:intron 30.0%
CCACACTTTCATAAAATGTA+CGG - chr4_4:79348808-79348827 None:intergenic 30.0%
!!! TAGTTTTGTTGTCAATGAAC+GGG - chr4_4:79348842-79348861 None:intergenic 30.0%
TGACAACAAAACTAAGAAGA+AGG + chr4_4:79348848-79348867 Msa0706380:three_prime_UTR 30.0%
!! TAGTTTGTTTGAGATGTTGA+TGG + chr4_4:79348922-79348941 Msa0706380:intron 30.0%
!! GATTAGTTTAATAGCTATCC+TGG - chr4_4:79349088-79349107 None:intergenic 30.0%
! ACTTGTTACAATGAGTTTCT+TGG + chr4_4:79349371-79349390 Msa0706380:three_prime_UTR 30.0%
CTTGTTACAATGAGTTTCTT+GGG + chr4_4:79349372-79349391 Msa0706380:three_prime_UTR 30.0%
AGACATTCATTTGTTCCAAA+TGG + chr4_4:79347701-79347720 Msa0706380:CDS 30.0%
TTGTCTTGTGCAATTTGATT+AGG - chr4_4:79347749-79347768 None:intergenic 30.0%
TAATCAAATTGCACAAGACA+AGG + chr4_4:79347748-79347767 Msa0706380:CDS 30.0%
! TGGAAGACATTTTCAAAAGA+AGG + chr4_4:79347823-79347842 Msa0706380:CDS 30.0%
! AGACATTTTCAAAAGAAGGA+TGG + chr4_4:79347827-79347846 Msa0706380:CDS 30.0%
TGTTAACTAGATATAGGGAT+AGG - chr4_4:79347912-79347931 None:intergenic 30.0%
!! TGAGAGATTTTAGCCATTAT+GGG - chr4_4:79348016-79348035 None:intergenic 30.0%
GATCTCTATTTGAGTATTAG+AGG + chr4_4:79348140-79348159 Msa0706380:intron 30.0%
! AAAAAGTAAATGGTAGCGAA+GGG - chr4_4:79348199-79348218 None:intergenic 30.0%
! AAAAAAGTAAATGGTAGCGA+AGG - chr4_4:79348200-79348219 None:intergenic 30.0%
! AGCAATTTTCTTTGTGATAC+AGG + chr4_4:79348420-79348439 Msa0706380:intron 30.0%
! GCAATTTTCTTTGTGATACA+GGG + chr4_4:79348421-79348440 Msa0706380:intron 30.0%
TTCTTGATAAACTATGTGCA+AGG + chr4_4:79348457-79348476 Msa0706380:CDS 30.0%
ATAACGATATACCTGCAAAA+TGG - chr4_4:79348659-79348678 None:intergenic 30.0%
ATTGTTAATTTCTTGGATGC+AGG + chr4_4:79348738-79348757 Msa0706380:intron 30.0%
CCACACTTTCATAAAATGTA+CGG - chr4_4:79348808-79348827 None:intergenic 30.0%
!!! TAGTTTTGTTGTCAATGAAC+GGG - chr4_4:79348842-79348861 None:intergenic 30.0%
TGACAACAAAACTAAGAAGA+AGG + chr4_4:79348848-79348867 Msa0706380:three_prime_UTR 30.0%
!! TAGTTTGTTTGAGATGTTGA+TGG + chr4_4:79348922-79348941 Msa0706380:intron 30.0%
!! GATTAGTTTAATAGCTATCC+TGG - chr4_4:79349088-79349107 None:intergenic 30.0%
! ACTTGTTACAATGAGTTTCT+TGG + chr4_4:79349371-79349390 Msa0706380:three_prime_UTR 30.0%
CTTGTTACAATGAGTTTCTT+GGG + chr4_4:79349372-79349391 Msa0706380:three_prime_UTR 30.0%
TCGTGATTTAGATGTAGAGA+AGG + chr4_4:79347646-79347665 Msa0706380:CDS 35.0%
TGTTCCTCAAGTACTTGAAA+TGG + chr4_4:79347678-79347697 Msa0706380:CDS 35.0%
GATAGAGATATGGAACCATT+TGG - chr4_4:79347719-79347738 None:intergenic 35.0%
!! AGAGATTTTAGCCATTATGG+GGG - chr4_4:79348014-79348033 None:intergenic 35.0%
!! GAGAGATTTTAGCCATTATG+GGG - chr4_4:79348015-79348034 None:intergenic 35.0%
!! CTGAGAGATTTTAGCCATTA+TGG - chr4_4:79348017-79348036 None:intergenic 35.0%
! AACTAGTCTCTTAATGCCAA+GGG - chr4_4:79348058-79348077 None:intergenic 35.0%
! TTAGAGGGTTAGTATACCAT+TGG + chr4_4:79348156-79348175 Msa0706380:intron 35.0%
TCATAATCCTTCGTTTCGAT+CGG - chr4_4:79348263-79348282 None:intergenic 35.0%
CAATATTACATACTAGCACC+AGG - chr4_4:79348339-79348358 None:intergenic 35.0%
! CTGGTGCTAGTATGTAATAT+TGG + chr4_4:79348337-79348356 Msa0706380:intron 35.0%
TATAGCAGAACTCAAAGGAT+GGG + chr4_4:79348591-79348610 Msa0706380:CDS 35.0%
ATATACCTGCAAAATGGAGA+GGG - chr4_4:79348653-79348672 None:intergenic 35.0%
TGTGTGAATTGTGAAGTAGT+TGG + chr4_4:79348692-79348711 Msa0706380:intron 35.0%
GATTACTACCCTGAAAGATT+GGG + chr4_4:79348760-79348779 Msa0706380:CDS 35.0%
ATTACTACCCTGAAAGATTG+GGG + chr4_4:79348761-79348780 Msa0706380:CDS 35.0%
! CCGTACATTTTATGAAAGTG+TGG + chr4_4:79348805-79348824 Msa0706380:exon 35.0%
TTCCACAAATACTATCTGCA+AGG - chr4_4:79348976-79348995 None:intergenic 35.0%
TATAGACGAAAGTCAACTTC+CGG + chr4_4:79349028-79349047 Msa0706380:three_prime_UTR 35.0%
TTTAATAGCTATCCTGGATG+GGG - chr4_4:79349082-79349101 None:intergenic 35.0%
GTTTAATAGCTATCCTGGAT+GGG - chr4_4:79349083-79349102 None:intergenic 35.0%
AGTTTAATAGCTATCCTGGA+TGG - chr4_4:79349084-79349103 None:intergenic 35.0%
GCTATTAAACTAATCAGCAC+TGG + chr4_4:79349093-79349112 Msa0706380:three_prime_UTR 35.0%
!! TAATCAGCACTGGCAAATTA+AGG + chr4_4:79349103-79349122 Msa0706380:three_prime_UTR 35.0%
CTATTAGACTGATAGTTCAG+TGG + chr4_4:79349209-79349228 Msa0706380:three_prime_UTR 35.0%
TCGTGATTTAGATGTAGAGA+AGG + chr4_4:79347646-79347665 Msa0706380:CDS 35.0%
TGTTCCTCAAGTACTTGAAA+TGG + chr4_4:79347678-79347697 Msa0706380:CDS 35.0%
GATAGAGATATGGAACCATT+TGG - chr4_4:79347719-79347738 None:intergenic 35.0%
!! AGAGATTTTAGCCATTATGG+GGG - chr4_4:79348014-79348033 None:intergenic 35.0%
!! GAGAGATTTTAGCCATTATG+GGG - chr4_4:79348015-79348034 None:intergenic 35.0%
!! CTGAGAGATTTTAGCCATTA+TGG - chr4_4:79348017-79348036 None:intergenic 35.0%
! AACTAGTCTCTTAATGCCAA+GGG - chr4_4:79348058-79348077 None:intergenic 35.0%
! TTAGAGGGTTAGTATACCAT+TGG + chr4_4:79348156-79348175 Msa0706380:intron 35.0%
TCATAATCCTTCGTTTCGAT+CGG - chr4_4:79348263-79348282 None:intergenic 35.0%
CAATATTACATACTAGCACC+AGG - chr4_4:79348339-79348358 None:intergenic 35.0%
! CTGGTGCTAGTATGTAATAT+TGG + chr4_4:79348337-79348356 Msa0706380:intron 35.0%
TATAGCAGAACTCAAAGGAT+GGG + chr4_4:79348591-79348610 Msa0706380:CDS 35.0%
ATATACCTGCAAAATGGAGA+GGG - chr4_4:79348653-79348672 None:intergenic 35.0%
TGTGTGAATTGTGAAGTAGT+TGG + chr4_4:79348692-79348711 Msa0706380:intron 35.0%
GATTACTACCCTGAAAGATT+GGG + chr4_4:79348760-79348779 Msa0706380:CDS 35.0%
ATTACTACCCTGAAAGATTG+GGG + chr4_4:79348761-79348780 Msa0706380:CDS 35.0%
! CCGTACATTTTATGAAAGTG+TGG + chr4_4:79348805-79348824 Msa0706380:exon 35.0%
TTCCACAAATACTATCTGCA+AGG - chr4_4:79348976-79348995 None:intergenic 35.0%
TATAGACGAAAGTCAACTTC+CGG + chr4_4:79349028-79349047 Msa0706380:three_prime_UTR 35.0%
TTTAATAGCTATCCTGGATG+GGG - chr4_4:79349082-79349101 None:intergenic 35.0%
GTTTAATAGCTATCCTGGAT+GGG - chr4_4:79349083-79349102 None:intergenic 35.0%
AGTTTAATAGCTATCCTGGA+TGG - chr4_4:79349084-79349103 None:intergenic 35.0%
GCTATTAAACTAATCAGCAC+TGG + chr4_4:79349093-79349112 Msa0706380:three_prime_UTR 35.0%
!! TAATCAGCACTGGCAAATTA+AGG + chr4_4:79349103-79349122 Msa0706380:three_prime_UTR 35.0%
CTATTAGACTGATAGTTCAG+TGG + chr4_4:79349209-79349228 Msa0706380:three_prime_UTR 35.0%
! GTCTCCATTTCAAGTACTTG+AGG - chr4_4:79347685-79347704 None:intergenic 40.0%
TGGTTCCATATCTCTATCAC+AGG + chr4_4:79347721-79347740 Msa0706380:CDS 40.0%
AGGAACCTGTGATAGAGATA+TGG - chr4_4:79347729-79347748 None:intergenic 40.0%
ACCAATCTTGTCATGTCCTT+GGG - chr4_4:79347780-79347799 None:intergenic 40.0%
CGACCAATACTTCTTGTCTT+TGG + chr4_4:79347800-79347819 Msa0706380:CDS 40.0%
! CCACCAAAGACAAGAAGTAT+TGG - chr4_4:79347806-79347825 None:intergenic 40.0%
CCAATACTTCTTGTCTTTGG+TGG + chr4_4:79347803-79347822 Msa0706380:CDS 40.0%
CCAATTGTGCTAACTTCTGT+TGG - chr4_4:79347953-79347972 None:intergenic 40.0%
CCAACAGAAGTTAGCACAAT+TGG + chr4_4:79347950-79347969 Msa0706380:intron 40.0%
AATCTCTCAGCATTTCTGCT+CGG + chr4_4:79348027-79348046 Msa0706380:intron 40.0%
! CAACTAGTCTCTTAATGCCA+AGG - chr4_4:79348059-79348078 None:intergenic 40.0%
! ACAAATTTTTCTTCCCCAGG+TGG - chr4_4:79348568-79348587 None:intergenic 40.0%
! CCAACAAATTTTTCTTCCCC+AGG - chr4_4:79348571-79348590 None:intergenic 40.0%
CCTGGGGAAGAAAAATTTGT+TGG + chr4_4:79348568-79348587 Msa0706380:CDS 40.0%
GTTGGTATAGCAGAACTCAA+AGG + chr4_4:79348586-79348605 Msa0706380:CDS 40.0%
GTATAGCAGAACTCAAAGGA+TGG + chr4_4:79348590-79348609 Msa0706380:CDS 40.0%
ATAGCAGAACTCAAAGGATG+GGG + chr4_4:79348592-79348611 Msa0706380:CDS 40.0%
TACTCAAATAGCGATTTGCG+TGG + chr4_4:79348616-79348635 Msa0706380:CDS 40.0%
GATATACCTGCAAAATGGAG+AGG - chr4_4:79348654-79348673 None:intergenic 40.0%
GGATTACTACCCTGAAAGAT+TGG + chr4_4:79348759-79348778 Msa0706380:intron 40.0%
ACAACTTCCCCAATCTTTCA+GGG - chr4_4:79348771-79348790 None:intergenic 40.0%
AACAACTTCCCCAATCTTTC+AGG - chr4_4:79348772-79348791 None:intergenic 40.0%
TTCATAAAATGTACGGTGCG+TGG - chr4_4:79348801-79348820 None:intergenic 40.0%
CTCCTTGCAGATAGTATTTG+TGG + chr4_4:79348971-79348990 Msa0706380:intron 40.0%
AGTCAACTTCCGGAGATATA+CGG + chr4_4:79349038-79349057 Msa0706380:three_prime_UTR 40.0%
CCATGACTGATCAACATCAA+TGG - chr4_4:79349249-79349268 None:intergenic 40.0%
CCATTGATGTTGATCAGTCA+TGG + chr4_4:79349246-79349265 Msa0706380:three_prime_UTR 40.0%
! CTAAGCAATTTTCTCGCAAC+TGG - chr4_4:79349581-79349600 None:intergenic 40.0%
! GTCTCCATTTCAAGTACTTG+AGG - chr4_4:79347685-79347704 None:intergenic 40.0%
TGGTTCCATATCTCTATCAC+AGG + chr4_4:79347721-79347740 Msa0706380:CDS 40.0%
AGGAACCTGTGATAGAGATA+TGG - chr4_4:79347729-79347748 None:intergenic 40.0%
ACCAATCTTGTCATGTCCTT+GGG - chr4_4:79347780-79347799 None:intergenic 40.0%
CGACCAATACTTCTTGTCTT+TGG + chr4_4:79347800-79347819 Msa0706380:CDS 40.0%
! CCACCAAAGACAAGAAGTAT+TGG - chr4_4:79347806-79347825 None:intergenic 40.0%
CCAATACTTCTTGTCTTTGG+TGG + chr4_4:79347803-79347822 Msa0706380:CDS 40.0%
CCAATTGTGCTAACTTCTGT+TGG - chr4_4:79347953-79347972 None:intergenic 40.0%
CCAACAGAAGTTAGCACAAT+TGG + chr4_4:79347950-79347969 Msa0706380:intron 40.0%
AATCTCTCAGCATTTCTGCT+CGG + chr4_4:79348027-79348046 Msa0706380:intron 40.0%
! CAACTAGTCTCTTAATGCCA+AGG - chr4_4:79348059-79348078 None:intergenic 40.0%
! ACAAATTTTTCTTCCCCAGG+TGG - chr4_4:79348568-79348587 None:intergenic 40.0%
! CCAACAAATTTTTCTTCCCC+AGG - chr4_4:79348571-79348590 None:intergenic 40.0%
CCTGGGGAAGAAAAATTTGT+TGG + chr4_4:79348568-79348587 Msa0706380:CDS 40.0%
GTTGGTATAGCAGAACTCAA+AGG + chr4_4:79348586-79348605 Msa0706380:CDS 40.0%
GTATAGCAGAACTCAAAGGA+TGG + chr4_4:79348590-79348609 Msa0706380:CDS 40.0%
ATAGCAGAACTCAAAGGATG+GGG + chr4_4:79348592-79348611 Msa0706380:CDS 40.0%
TACTCAAATAGCGATTTGCG+TGG + chr4_4:79348616-79348635 Msa0706380:CDS 40.0%
GATATACCTGCAAAATGGAG+AGG - chr4_4:79348654-79348673 None:intergenic 40.0%
GGATTACTACCCTGAAAGAT+TGG + chr4_4:79348759-79348778 Msa0706380:intron 40.0%
ACAACTTCCCCAATCTTTCA+GGG - chr4_4:79348771-79348790 None:intergenic 40.0%
AACAACTTCCCCAATCTTTC+AGG - chr4_4:79348772-79348791 None:intergenic 40.0%
TTCATAAAATGTACGGTGCG+TGG - chr4_4:79348801-79348820 None:intergenic 40.0%
CTCCTTGCAGATAGTATTTG+TGG + chr4_4:79348971-79348990 Msa0706380:intron 40.0%
AGTCAACTTCCGGAGATATA+CGG + chr4_4:79349038-79349057 Msa0706380:three_prime_UTR 40.0%
CCATGACTGATCAACATCAA+TGG - chr4_4:79349249-79349268 None:intergenic 40.0%
CCATTGATGTTGATCAGTCA+TGG + chr4_4:79349246-79349265 Msa0706380:three_prime_UTR 40.0%
! CTAAGCAATTTTCTCGCAAC+TGG - chr4_4:79349581-79349600 None:intergenic 40.0%
GACCAATCTTGTCATGTCCT+TGG - chr4_4:79347781-79347800 None:intergenic 45.0%
ATCTCTCAGCATTTCTGCTC+GGG + chr4_4:79348028-79348047 Msa0706380:intron 45.0%
TGATCAACCGATCGAAACGA+AGG + chr4_4:79348253-79348272 Msa0706380:intron 45.0%
AGCGATTTGCGTGGATACAT+TGG + chr4_4:79348625-79348644 Msa0706380:CDS 45.0%
TAGTTGGAAGCTTAGCACTC+AGG + chr4_4:79348708-79348727 Msa0706380:intron 45.0%
AGTTGGAAGCTTAGCACTCA+GGG + chr4_4:79348709-79348728 Msa0706380:intron 45.0%
AGTTTGCCACCGTATATCTC+CGG - chr4_4:79349050-79349069 None:intergenic 45.0%
GAATGATGTGTGACTGAGTG+CGG + chr4_4:79349473-79349492 Msa0706380:three_prime_UTR 45.0%
! AACAGCTCCTTCTCTTTTGG+TGG + chr4_4:79349605-79349624 Msa0706380:three_prime_UTR 45.0%
!!! CTTCTCTTTTGGTGGTGGTT+GGG + chr4_4:79349613-79349632 Msa0706380:three_prime_UTR 45.0%
!!! TTCTCTTTTGGTGGTGGTTG+GGG + chr4_4:79349614-79349633 Msa0706380:three_prime_UTR 45.0%
GACCAATCTTGTCATGTCCT+TGG - chr4_4:79347781-79347800 None:intergenic 45.0%
ATCTCTCAGCATTTCTGCTC+GGG + chr4_4:79348028-79348047 Msa0706380:intron 45.0%
TGATCAACCGATCGAAACGA+AGG + chr4_4:79348253-79348272 Msa0706380:intron 45.0%
AGCGATTTGCGTGGATACAT+TGG + chr4_4:79348625-79348644 Msa0706380:CDS 45.0%
TAGTTGGAAGCTTAGCACTC+AGG + chr4_4:79348708-79348727 Msa0706380:intron 45.0%
AGTTGGAAGCTTAGCACTCA+GGG + chr4_4:79348709-79348728 Msa0706380:intron 45.0%
AGTTTGCCACCGTATATCTC+CGG - chr4_4:79349050-79349069 None:intergenic 45.0%
GAATGATGTGTGACTGAGTG+CGG + chr4_4:79349473-79349492 Msa0706380:three_prime_UTR 45.0%
! AACAGCTCCTTCTCTTTTGG+TGG + chr4_4:79349605-79349624 Msa0706380:three_prime_UTR 45.0%
!!! CTTCTCTTTTGGTGGTGGTT+GGG + chr4_4:79349613-79349632 Msa0706380:three_prime_UTR 45.0%
!!! TTCTCTTTTGGTGGTGGTTG+GGG + chr4_4:79349614-79349633 Msa0706380:three_prime_UTR 45.0%
GCCCAAGGACATGACAAGAT+TGG + chr4_4:79347776-79347795 Msa0706380:CDS 50.0%
GCCATTATGGGGGATTCACA+GGG - chr4_4:79348004-79348023 None:intergenic 50.0%
AGCCATTATGGGGGATTCAC+AGG - chr4_4:79348005-79348024 None:intergenic 50.0%
! TATACCATTGGTGCCCCACT+CGG + chr4_4:79348168-79348187 Msa0706380:intron 50.0%
TGATGTATCAGCATGCCACC+TGG + chr4_4:79348550-79348569 Msa0706380:intron 50.0%
GATGTATCAGCATGCCACCT+GGG + chr4_4:79348551-79348570 Msa0706380:intron 50.0%
ATGTATCAGCATGCCACCTG+GGG + chr4_4:79348552-79348571 Msa0706380:intron 50.0%
CAACTTCCGGAGATATACGG+TGG + chr4_4:79349041-79349060 Msa0706380:three_prime_UTR 50.0%
ACTGCAATTAGTCCCCATCC+AGG + chr4_4:79349067-79349086 Msa0706380:three_prime_UTR 50.0%
! CGCAACAGCTCCTTCTCTTT+TGG + chr4_4:79349602-79349621 Msa0706380:three_prime_UTR 50.0%
! AGCTCCTTCTCTTTTGGTGG+TGG + chr4_4:79349608-79349627 Msa0706380:three_prime_UTR 50.0%
CCAACCACCACCAAAAGAGA+AGG - chr4_4:79349615-79349634 None:intergenic 50.0%
!!! CCTTCTCTTTTGGTGGTGGT+TGG + chr4_4:79349612-79349631 Msa0706380:three_prime_UTR 50.0%
GCCCAAGGACATGACAAGAT+TGG + chr4_4:79347776-79347795 Msa0706380:CDS 50.0%
GCCATTATGGGGGATTCACA+GGG - chr4_4:79348004-79348023 None:intergenic 50.0%
AGCCATTATGGGGGATTCAC+AGG - chr4_4:79348005-79348024 None:intergenic 50.0%
! TATACCATTGGTGCCCCACT+CGG + chr4_4:79348168-79348187 Msa0706380:intron 50.0%
TGATGTATCAGCATGCCACC+TGG + chr4_4:79348550-79348569 Msa0706380:intron 50.0%
GATGTATCAGCATGCCACCT+GGG + chr4_4:79348551-79348570 Msa0706380:intron 50.0%
ATGTATCAGCATGCCACCTG+GGG + chr4_4:79348552-79348571 Msa0706380:intron 50.0%
CAACTTCCGGAGATATACGG+TGG + chr4_4:79349041-79349060 Msa0706380:three_prime_UTR 50.0%
ACTGCAATTAGTCCCCATCC+AGG + chr4_4:79349067-79349086 Msa0706380:three_prime_UTR 50.0%
! CGCAACAGCTCCTTCTCTTT+TGG + chr4_4:79349602-79349621 Msa0706380:three_prime_UTR 50.0%
! AGCTCCTTCTCTTTTGGTGG+TGG + chr4_4:79349608-79349627 Msa0706380:three_prime_UTR 50.0%
CCAACCACCACCAAAAGAGA+AGG - chr4_4:79349615-79349634 None:intergenic 50.0%
!!! CCTTCTCTTTTGGTGGTGGT+TGG + chr4_4:79349612-79349631 Msa0706380:three_prime_UTR 50.0%
CTTGTCATGTCCTTGGGCGA+AGG - chr4_4:79347774-79347793 None:intergenic 55.0%
ATGGGGGATTCACAGGGCAT+TGG - chr4_4:79347998-79348017 None:intergenic 55.0%
GCCCTGTGAATCCCCCATAA+TGG + chr4_4:79348000-79348019 Msa0706380:intron 55.0%
TTTCTGCTCGGGAGATCCCT+TGG + chr4_4:79348039-79348058 Msa0706380:intron 55.0%
! ATACCATTGGTGCCCCACTC+GGG + chr4_4:79348169-79348188 Msa0706380:intron 55.0%
! TGGTGCCCTCTCCATTTTGC+AGG + chr4_4:79348645-79348664 Msa0706380:CDS 55.0%
!! TGGTGGTGGTTGGGGTTTGA+AGG + chr4_4:79349622-79349641 Msa0706380:three_prime_UTR 55.0%
CTTGTCATGTCCTTGGGCGA+AGG - chr4_4:79347774-79347793 None:intergenic 55.0%
ATGGGGGATTCACAGGGCAT+TGG - chr4_4:79347998-79348017 None:intergenic 55.0%
GCCCTGTGAATCCCCCATAA+TGG + chr4_4:79348000-79348019 Msa0706380:intron 55.0%
TTTCTGCTCGGGAGATCCCT+TGG + chr4_4:79348039-79348058 Msa0706380:intron 55.0%
! ATACCATTGGTGCCCCACTC+GGG + chr4_4:79348169-79348188 Msa0706380:intron 55.0%
! TGGTGCCCTCTCCATTTTGC+AGG + chr4_4:79348645-79348664 Msa0706380:CDS 55.0%
CAAGACAAGGCCTTCGCCCA+AGG + chr4_4:79347761-79347780 Msa0706380:CDS 60.0%
CAAGACAAGGCCTTCGCCCA+AGG + chr4_4:79347761-79347780 Msa0706380:CDS 60.0%
!! AGCGAAGGGAGCACCCGAGT+GGG - chr4_4:79348185-79348204 None:intergenic 65.0%
!! TAGCGAAGGGAGCACCCGAG+TGG - chr4_4:79348186-79348205 None:intergenic 65.0%
!! AGCGAAGGGAGCACCCGAGT+GGG - chr4_4:79348185-79348204 None:intergenic 65.0%
!! TAGCGAAGGGAGCACCCGAG+TGG - chr4_4:79348186-79348205 None:intergenic 65.0%
! GCACCCGAGTGGGGCACCAA+TGG - chr4_4:79348175-79348194 None:intergenic 70.0%
!! GCGAAGGGAGCACCCGAGTG+GGG - chr4_4:79348184-79348203 None:intergenic 70.0%
! GCACCCGAGTGGGGCACCAA+TGG - chr4_4:79348175-79348194 None:intergenic 70.0%
!! GCGAAGGGAGCACCCGAGTG+GGG - chr4_4:79348184-79348203 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79347606 79349641 79347606 ID=Msa0706380;Name=Msa0706380
chr4_4 mRNA 79347606 79349641 79347606 ID=Msa0706380-mRNA-1;Parent=Msa0706380;Name=Msa0706380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=17|1|1|1|0.75|0.6|5|711|148
chr4_4 exon 79347606 79347866 79347606 ID=Msa0706380-mRNA-1:exon:25495;Parent=Msa0706380-mRNA-1
chr4_4 exon 79348442 79348478 79348442 ID=Msa0706380-mRNA-1:exon:25496;Parent=Msa0706380-mRNA-1
chr4_4 exon 79348561 79348666 79348561 ID=Msa0706380-mRNA-1:exon:25497;Parent=Msa0706380-mRNA-1
chr4_4 exon 79348760 79348869 79348760 ID=Msa0706380-mRNA-1:exon:25498;Parent=Msa0706380-mRNA-1
chr4_4 exon 79348981 79349641 79348981 ID=Msa0706380-mRNA-1:exon:25499;Parent=Msa0706380-mRNA-1
chr4_4 five_prime_UTR 79347606 79347622 79347606 ID=Msa0706380-mRNA-1:five_prime_utr;Parent=Msa0706380-mRNA-1
chr4_4 CDS 79347623 79347866 79347623 ID=Msa0706380-mRNA-1:cds;Parent=Msa0706380-mRNA-1
chr4_4 CDS 79348442 79348478 79348442 ID=Msa0706380-mRNA-1:cds;Parent=Msa0706380-mRNA-1
chr4_4 CDS 79348561 79348666 79348561 ID=Msa0706380-mRNA-1:cds;Parent=Msa0706380-mRNA-1
chr4_4 CDS 79348760 79348819 79348760 ID=Msa0706380-mRNA-1:cds;Parent=Msa0706380-mRNA-1
chr4_4 three_prime_UTR 79348820 79348869 79348820 ID=Msa0706380-mRNA-1:three_prime_utr;Parent=Msa0706380-mRNA-1
chr4_4 three_prime_UTR 79348981 79349641 79348981 ID=Msa0706380-mRNA-1:three_prime_utr;Parent=Msa0706380-mRNA-1
Gene Sequence

>Msa0706380

ATGATCAGAAGATTTCTACGTGCTCGTGATTTAGATGTAGAGAAGGCTTCAGCAATGTTCCTCAAGTACTTGAAATGGAGACATTCATTTGTTCCAAATGGTTCCATATCTCTATCACAGGTTCCTAATCAAATTGCACAAGACAAGGCCTTCGCCCAAGGACATGACAAGATTGGTCGACCAATACTTCTTGTCTTTGGTGGAAGACATTTTCAAAAGAAGGATGGTCTAGATGAATTCAAACGGTTTGCAGTTTATATTCTTGATAAACTATGTGCAAGCATGCCACCTGGGGAAGAAAAATTTGTTGGTATAGCAGAACTCAAAGGATGGGGTTACTCAAATAGCGATTTGCGTGGATACATTGGTGCCCTCTCCATTTTGCAGGATTACTACCCTGAAAGATTGGGGAAGTTGTTTATTCTCCACGCACCGTACATTTTATGA

Protein sequence

>Msa0706380

MIRRFLRARDLDVEKASAMFLKYLKWRHSFVPNGSISLSQVPNQIAQDKAFAQGHDKIGRPILLVFGGRHFQKKDGLDEFKRFAVYILDKLCASMPPGEEKFVGIAELKGWGYSNSDLRGYIGALSILQDYYPERLGKLFILHAPYIL*