Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664560 | XP_013454579.1 | 95.062 | 243 | 5 | 1 | 39 | 274 | 1 | 243 | 3.71e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664560 | sp|Q9LHP1|RL74_ARATH | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.40e-146 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664560 | A0A072URW1 | 95.062 | 243 | 5 | 1 | 39 | 274 | 1 | 243 | 1.77e-165 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0664560 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0002790 | Msa0664560 | 0.810085 | 1.373353e-50 | -8.615850e-47 |
| Msa0032780 | Msa0664560 | 0.807372 | 5.219248e-50 | -8.615850e-47 |
| Msa0032810 | Msa0664560 | 0.814400 | 1.570614e-51 | -8.615850e-47 |
| Msa0044890 | Msa0664560 | 0.800449 | 1.433876e-48 | -8.615850e-47 |
| Msa0105370 | Msa0664560 | 0.823833 | 1.119437e-53 | -8.615850e-47 |
| Msa0120520 | Msa0664560 | 0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa0615580 | Msa0664560 | 0.808409 | 3.141676e-50 | -8.615850e-47 |
| Msa0616870 | Msa0664560 | -0.802925 | 4.450797e-49 | -8.615850e-47 |
| Msa0664560 | Msa0698780 | 0.824419 | 8.154568e-54 | -8.615850e-47 |
| Msa0664560 | Msa0806880 | 0.808961 | 2.394919e-50 | -8.615850e-47 |
| Msa0664560 | Msa0881290 | 0.805299 | 1.427286e-49 | -8.615850e-47 |
| Msa0664560 | Msa0953310 | 0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0664560 | Msa1012740 | 0.821209 | 4.560419e-53 | -8.615850e-47 |
| Msa0664560 | Msa1021520 | 0.804482 | 2.115115e-49 | -8.615850e-47 |
| Msa0664560 | Msa1060230 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
| Msa0664560 | Msa1060260 | 0.815498 | 8.965119e-52 | -8.615850e-47 |
| Msa0664560 | Msa1105460 | 0.802754 | 4.828510e-49 | -8.615850e-47 |
| Msa0664560 | Msa1105510 | 0.861947 | 7.169097e-64 | -8.615850e-47 |
| Msa0664560 | Msa1123770 | 0.832588 | 8.677495e-56 | -8.615850e-47 |
| Msa0664560 | Msa1135890 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa0664560 | Msa1148910 | 0.800886 | 1.167657e-48 | -8.615850e-47 |
| Msa0664560 | Msa1169910 | 0.825734 | 3.988363e-54 | -8.615850e-47 |
| Msa0664560 | Msa1209200 | 0.800899 | 1.160840e-48 | -8.615850e-47 |
| Msa0664560 | Msa1215820 | 0.801076 | 1.067901e-48 | -8.615850e-47 |
| Msa0664560 | Msa1265630 | 0.800106 | 1.684076e-48 | -8.615850e-47 |
| Msa0664560 | Msa1275680 | 0.825628 | 4.225541e-54 | -8.615850e-47 |
| Msa0664560 | Msa1277260 | 0.837415 | 5.267477e-57 | -8.615850e-47 |
| Msa0664560 | Msa1299590 | 0.806680 | 7.314498e-50 | -8.615850e-47 |
| Msa0664560 | Msa1315890 | 0.841419 | 4.806054e-58 | -8.615850e-47 |
| Msa0664560 | Msa1332250 | 0.823434 | 1.387925e-53 | -8.615850e-47 |
| Msa0664560 | Msa1385720 | 0.831024 | 2.110387e-55 | -8.615850e-47 |
| Msa0664560 | Msa1413500 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0664560 | Msa1434090 | 0.813763 | 2.171174e-51 | -8.615850e-47 |
| Msa0120880 | Msa0664560 | 0.803635 | 3.172780e-49 | -8.615850e-47 |
| Msa0133540 | Msa0664560 | 0.816515 | 5.315438e-52 | -8.615850e-47 |
| Msa0172930 | Msa0664560 | 0.816000 | 6.929744e-52 | -8.615850e-47 |
| Msa0189700 | Msa0664560 | 0.805969 | 1.032470e-49 | -8.615850e-47 |
| Msa0230490 | Msa0664560 | 0.823080 | 1.678841e-53 | -8.615850e-47 |
| Msa0232010 | Msa0664560 | 0.802206 | 6.262228e-49 | -8.615850e-47 |
| Msa0232080 | Msa0664560 | 0.804741 | 1.867241e-49 | -8.615850e-47 |
| Msa0375310 | Msa0664560 | 0.806875 | 6.650939e-50 | -8.615850e-47 |
| Msa0393370 | Msa0664560 | 0.822184 | 2.713872e-53 | -8.615850e-47 |
| Msa0421500 | Msa0664560 | 0.808176 | 3.521907e-50 | -8.615850e-47 |
| Msa0437020 | Msa0664560 | 0.819918 | 9.024373e-53 | -8.615850e-47 |
| Msa0443390 | Msa0664560 | 0.804149 | 2.480792e-49 | -8.615850e-47 |
| Msa0456060 | Msa0664560 | 0.808862 | 2.513678e-50 | -8.615850e-47 |
| Msa0258390 | Msa0664560 | 0.852465 | 4.536171e-61 | -8.615850e-47 |
| Msa0289580 | Msa0664560 | 0.832925 | 7.154611e-56 | -8.615850e-47 |
| Msa0289610 | Msa0664560 | 0.828247 | 9.998483e-55 | -8.615850e-47 |
| Msa0297610 | Msa0664560 | 0.849098 | 4.020567e-60 | -8.615850e-47 |
| Msa0306690 | Msa0664560 | 0.801015 | 1.099181e-48 | -8.615850e-47 |
| Msa0335730 | Msa0664560 | 0.801633 | 8.213625e-49 | -8.615850e-47 |
| Msa0486070 | Msa0664560 | 0.801567 | 8.471082e-49 | -8.615850e-47 |
| Msa0531650 | Msa0664560 | 0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0581280 | Msa0664560 | 0.807333 | 5.321407e-50 | -8.615850e-47 |
| Msa0584260 | Msa0664560 | 0.847833 | 9.004255e-60 | -8.615850e-47 |
| Msa0586420 | Msa0664560 | 0.885996 | 5.019590e-72 | -8.615850e-47 |
| Msa0588360 | Msa0664560 | 0.832947 | 7.067462e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664560 | MtrunA17_Chr4g0002321 | 95.062 | 243 | 5 | 1 | 39 | 274 | 1 | 243 | 3.41e-169 | 467 |
| Msa0664560 | MtrunA17_Chr1g0155331 | 84.232 | 241 | 31 | 1 | 41 | 274 | 4 | 244 | 3.26e-151 | 422 |
| Msa0664560 | MtrunA17_Chr2g0298841 | 83.402 | 241 | 33 | 1 | 41 | 274 | 4 | 244 | 1.74e-149 | 417 |
| Msa0664560 | MtrunA17_Chr7g0237701 | 45.532 | 235 | 120 | 2 | 47 | 274 | 13 | 246 | 2.84e-68 | 211 |
| Msa0664560 | MtrunA17_Chr1g0155311 | 93.333 | 60 | 4 | 0 | 205 | 264 | 3 | 62 | 2.53e-37 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664560 | AT3G13580.5 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.4 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.2 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.3 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.1 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.7 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.8 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.6 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT3G13580.9 | 81.667 | 240 | 37 | 1 | 42 | 274 | 5 | 244 | 6.50e-147 | 411 |
| Msa0664560 | AT2G01250.1 | 82.500 | 240 | 35 | 1 | 42 | 274 | 3 | 242 | 1.06e-144 | 405 |
| Msa0664560 | AT2G44120.2 | 78.750 | 240 | 44 | 1 | 42 | 274 | 8 | 247 | 4.86e-139 | 392 |
| Msa0664560 | AT2G44120.1 | 78.750 | 240 | 44 | 1 | 42 | 274 | 3 | 242 | 5.18e-139 | 391 |
| Msa0664560 | AT2G01250.2 | 78.107 | 169 | 30 | 1 | 42 | 203 | 3 | 171 | 6.86e-89 | 262 |
| Msa0664560 | AT1G80750.1 | 40.486 | 247 | 131 | 5 | 41 | 274 | 4 | 247 | 3.12e-53 | 173 |
Find 71 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTATTAACTTTA+AGG | 0.075401 | 4_4:+3576676 | None:intergenic |
| TCCCTTACACTCTTCAAATT+TGG | 0.097727 | 4_4:+3576522 | None:intergenic |
| CAATTGGGTATCTGAAATTT+TGG | 0.126096 | 4_4:-3576052 | Msa0664560:three_prime_UTR |
| GTTGAGCCTTATGTGACTTA+TGG | 0.277993 | 4_4:-3576636 | Msa0664560:CDS |
| CCCTTACACTCTTCAAATTT+GGG | 0.292487 | 4_4:+3576523 | None:intergenic |
| GGCTTTAGATCAAGATCAAT+TGG | 0.333078 | 4_4:-3576068 | Msa0664560:three_prime_UTR |
| TTGAGCCTTATGTGACTTAT+GGG | 0.362158 | 4_4:-3576635 | Msa0664560:intron |
| CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4_4:-3578189 | Msa0664560:CDS |
| CCTTTGGCCGTTCAAGCTTA+AGG | 0.366667 | 4_4:-3576245 | Msa0664560:CDS |
| AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4_4:-3576261 | Msa0664560:CDS |
| GACTGTTGGACCACATTTCA+AGG | 0.408463 | 4_4:-3576281 | Msa0664560:CDS |
| ACCCAAATTTGAAGAGTGTA+AGG | 0.411117 | 4_4:-3576524 | Msa0664560:CDS |
| ATTACATCAATGAGCTCATC+AGG | 0.421060 | 4_4:-3576153 | Msa0664560:CDS |
| CTCATCTACAAACGTGGGTA+TGG | 0.426956 | 4_4:-3576498 | Msa0664560:CDS |
| TTTCCTTGTCTTGGGGTCCA+TGG | 0.427816 | 4_4:+3576965 | None:intergenic |
| GAGAACCGTAAGCTGATCTA+TGG | 0.446007 | 4_4:-3578106 | Msa0664560:CDS |
| GTTCAAGCTTAAGGCTCCAT+TGG | 0.447908 | 4_4:-3576236 | Msa0664560:CDS |
| TTCTCAAGAGTATGAGGATA+AGG | 0.453623 | 4_4:-3578068 | Msa0664560:intron |
| TATGTTGAAGGCGGTGATGC+TGG | 0.455644 | 4_4:-3576187 | Msa0664560:CDS |
| GGAAGGTTTGTGAATAAGTA+GGG | 0.456126 | 4_4:+3578507 | None:intergenic |
| CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4_4:-3578170 | Msa0664560:CDS |
| ACCGTAAGCTGATCTATGGC+AGG | 0.465539 | 4_4:-3578102 | Msa0664560:CDS |
| GTGGGTATGGAAAGCTAGAC+AGG | 0.468462 | 4_4:-3576485 | Msa0664560:CDS |
| TTTGATGACCCTCAGGGACT+GGG | 0.469200 | 4_4:-3576349 | Msa0664560:intron |
| TTCAAGCTTAAGGCTCCATT+GGG | 0.471133 | 4_4:-3576235 | Msa0664560:CDS |
| GGGAAGGTTTGTGAATAAGT+AGG | 0.474859 | 4_4:+3578506 | None:intergenic |
| GCAACTGTTTCGATTGAGAC+AGG | 0.474956 | 4_4:-3576937 | Msa0664560:intron |
| ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4_4:+3577854 | None:intergenic |
| AATGACTCTGCAGGTGCAAA+GGG | 0.483245 | 4_4:+3578473 | None:intergenic |
| GGAAATTCATTTACACCTGC+GGG | 0.491680 | 4_4:+3575850 | None:intergenic |
| GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4_4:-3578176 | Msa0664560:CDS |
| TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4_4:+3578196 | None:intergenic |
| GCGAATAATAAACAAGAGCT+TGG | 0.498068 | 4_4:+3577847 | None:intergenic |
| GCTTTAGATCAAGATCAATT+GGG | 0.500299 | 4_4:-3576067 | Msa0664560:three_prime_UTR |
| GCAGTATTCTCAAGAGTATG+AGG | 0.504039 | 4_4:-3578074 | Msa0664560:CDS |
| CCCTGCCATAGATCAGCTTA+CGG | 0.515436 | 4_4:+3578101 | None:intergenic |
| GAGTCATTCACTTCCTCCCT+CGG | 0.515591 | 4_4:-3578458 | Msa0664560:intron |
| CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4_4:-3576659 | Msa0664560:CDS |
| AAGAGGAACCACTATGTTGA+AGG | 0.523907 | 4_4:-3576199 | Msa0664560:CDS |
| AAGCTTAAGGCTCCATTGGG+TGG | 0.532905 | 4_4:-3576232 | Msa0664560:CDS |
| ACATACCCATAAGTCACATA+AGG | 0.533172 | 4_4:+3576630 | None:intergenic |
| GAATGACTCTGCAGGTGCAA+AGG | 0.535299 | 4_4:+3578472 | None:intergenic |
| GATTTAAAGCTTATACCCGC+AGG | 0.539513 | 4_4:-3575865 | Msa0664560:three_prime_UTR |
| ATCCACGAGATCTTGACTGT+TGG | 0.544552 | 4_4:-3576295 | Msa0664560:CDS |
| TTCTTCTTTAAGCCACCCAA+TGG | 0.546850 | 4_4:+3576220 | None:intergenic |
| TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4_4:-3576445 | Msa0664560:intron |
| GAGGAAGTGAATGACTCTGC+AGG | 0.559290 | 4_4:+3578464 | None:intergenic |
| CCTCAGGGACTGGGAAAGCA+TGG | 0.559473 | 4_4:-3576340 | Msa0664560:intron |
| AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4_4:-3578177 | Msa0664560:CDS |
| TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4_4:+3576271 | None:intergenic |
| CGCGAGGCTAAGCTGAAAGG+TGG | 0.576946 | 4_4:-3577890 | Msa0664560:CDS |
| GGATAAGATCTTCAATGCAT+AGG | 0.579833 | 4_4:+3576314 | None:intergenic |
| CCTTAAGCTTGAACGGCCAA+AGG | 0.585766 | 4_4:+3576245 | None:intergenic |
| GGGAAATTCATTTACACCTG+CGG | 0.589903 | 4_4:+3575849 | None:intergenic |
| AATGGAGCCTTAAGCTTGAA+CGG | 0.593439 | 4_4:+3576238 | None:intergenic |
| AAGCGCGAGGCTAAGCTGAA+AGG | 0.593449 | 4_4:-3577893 | Msa0664560:CDS |
| GTCCAACAGTCAAGATCTCG+TGG | 0.596847 | 4_4:+3576293 | None:intergenic |
| CATCACCGCCTTCAACATAG+TGG | 0.607669 | 4_4:+3576191 | None:intergenic |
| ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4_4:+3576453 | None:intergenic |
| TGGGTGGCTTAAAGAAGAAG+AGG | 0.609725 | 4_4:-3576216 | Msa0664560:CDS |
| CCCAAATTTGAAGAGTGTAA+GGG | 0.616996 | 4_4:-3576523 | Msa0664560:CDS |
| GTTGATTAGTTTGAAGCGCG+AGG | 0.628393 | 4_4:-3577906 | Msa0664560:CDS |
| ATGCCATGGACCCCAAGACA+AGG | 0.632973 | 4_4:-3576968 | Msa0664560:CDS |
| TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4_4:-3578188 | Msa0664560:CDS |
| AACAATGAACATGTTGCACA+GGG | 0.654102 | 4_4:-3576658 | Msa0664560:CDS |
| CCGTAAGCTGATCTATGGCA+GGG | 0.654899 | 4_4:-3578101 | Msa0664560:CDS |
| TTAGGGTTACATACCGAGGG+AGG | 0.667853 | 4_4:+3578445 | None:intergenic |
| AGGGAACTCATCTACAAACG+TGG | 0.682905 | 4_4:-3576504 | Msa0664560:CDS |
| GGGAACTCATCTACAAACGT+GGG | 0.687591 | 4_4:-3576503 | Msa0664560:CDS |
| AGGAACCACTATGTTGAAGG+CGG | 0.698307 | 4_4:-3576196 | Msa0664560:CDS |
| GGGCTTGTCAGCAAATAGTG+AGG | 0.703691 | 4_4:+3578542 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCACAATATTATAGTATAA+TGG | + | chr4_4:3576091-3576110 | None:intergenic | 15.0% |
| !!! | ATAATTGCGTTTTTTTTTTT+TGG | - | chr4_4:3576136-3576155 | Msa0664560:exon | 15.0% |
| !! | GTTCTTTACAAAATTTAATA+AGG | - | chr4_4:3577094-3577113 | Msa0664560:intron | 15.0% |
| !! | TGAAATGAAAAACATACAAA+TGG | + | chr4_4:3576031-3576050 | None:intergenic | 20.0% |
| !! | AATGGAAAATCATAAGATAA+CGG | + | chr4_4:3576073-3576092 | None:intergenic | 20.0% |
| !!! | GGTTTTGTTTTTTATTTTGT+AGG | - | chr4_4:3576461-3576480 | Msa0664560:CDS | 20.0% |
| !! | TAACGAGTTTAATAGAAATA+TGG | - | chr4_4:3576935-3576954 | Msa0664560:intron | 20.0% |
| !! | TGAAAAATCAATCAATAGTA+AGG | + | chr4_4:3577403-3577422 | None:intergenic | 20.0% |
| !!! | TTGTTGCTTTATTAACTTTA+AGG | + | chr4_4:3577724-3577743 | None:intergenic | 20.0% |
| !!! | CAATTGATATTTTTTGTTGT+TGG | - | chr4_4:3578308-3578327 | Msa0664560:intron | 20.0% |
| !!! | TAAAAAACAAATTTGAGACA+AGG | + | chr4_4:3578505-3578524 | None:intergenic | 20.0% |
| ! | AAAGAGTGAAAGAGAAATTA+GGG | + | chr4_4:3575972-3575991 | None:intergenic | 25.0% |
| ! | AATGAAAAACATACAAATGG+TGG | + | chr4_4:3576028-3576047 | None:intergenic | 25.0% |
| !!! | TTGGTAATGAATAACAGATA+TGG | - | chr4_4:3576155-3576174 | Msa0664560:CDS | 25.0% |
| !! | TGGTAATGAATAACAGATAT+GGG | - | chr4_4:3576156-3576175 | Msa0664560:CDS | 25.0% |
| !!! | GTTTGGTTTTTTTAGTTGTT+CGG | - | chr4_4:3576379-3576398 | Msa0664560:intron | 25.0% |
| ! | CACTTAATTCAATTTCATGT+TGG | + | chr4_4:3576645-3576664 | None:intergenic | 25.0% |
| ! | AGTACTTATAGTAGAAAAGA+CGG | - | chr4_4:3576758-3576777 | Msa0664560:intron | 25.0% |
| ! | ATCTCTTGATCTTTCTTAAT+AGG | + | chr4_4:3576915-3576934 | None:intergenic | 25.0% |
| ! | TGGTATTTGATAGAATAGTA+TGG | - | chr4_4:3576955-3576974 | Msa0664560:CDS | 25.0% |
| ! | TTCTAAACAATAAGAGAAAC+TGG | + | chr4_4:3577240-3577259 | None:intergenic | 25.0% |
| !! | TTCTTCTTCTATAAGTGTTT+TGG | - | chr4_4:3577330-3577349 | Msa0664560:intron | 25.0% |
| !!! | ATTTTTCAGTATTAATGCCA+TGG | - | chr4_4:3577415-3577434 | Msa0664560:intron | 25.0% |
| !! | TCACCTCATTTAAATTTGTT+AGG | - | chr4_4:3577511-3577530 | Msa0664560:intron | 25.0% |
| ! | AAGCCTAACAAATTTAAATG+AGG | + | chr4_4:3577517-3577536 | None:intergenic | 25.0% |
| ! | CTTATACCAACAAAAATATC+CGG | + | chr4_4:3577649-3577668 | None:intergenic | 25.0% |
| !!! | CTTTCTTCCTATTGATTTAA+AGG | - | chr4_4:3577797-3577816 | Msa0664560:intron | 25.0% |
| ! | ATCATTGCCTTTAAATCAAT+AGG | + | chr4_4:3577807-3577826 | None:intergenic | 25.0% |
| !! | TTGCAGTGTTTAATCTTTTT+AGG | - | chr4_4:3578283-3578302 | Msa0664560:intron | 25.0% |
| !! | TGCAGTGTTTAATCTTTTTA+GGG | - | chr4_4:3578284-3578303 | Msa0664560:intron | 25.0% |
| !! | AAGTAGGGTTTTGTAGATAT+GGG | + | chr4_4:3575878-3575897 | None:intergenic | 30.0% |
| !! | TAAGTAGGGTTTTGTAGATA+TGG | + | chr4_4:3575879-3575898 | None:intergenic | 30.0% |
| GAAAGAGTGAAAGAGAAATT+AGG | + | chr4_4:3575973-3575992 | None:intergenic | 30.0% | |
| TTGTTTATTATTCGCATACG+AGG | - | chr4_4:3576558-3576577 | Msa0664560:intron | 30.0% | |
| TGTTTATTATTCGCATACGA+GGG | - | chr4_4:3576559-3576578 | Msa0664560:intron | 30.0% | |
| !!! | TGTTTTGTGTTGATTCAGAT+TGG | - | chr4_4:3576594-3576613 | Msa0664560:intron | 30.0% |
| AATTAAGTGTAGTAGAGATG+AGG | - | chr4_4:3576656-3576675 | Msa0664560:CDS | 30.0% | |
| TGATAAAGACTAGACAAGAT+AGG | - | chr4_4:3576696-3576715 | Msa0664560:CDS | 30.0% | |
| GATAAAGACTAGACAAGATA+GGG | - | chr4_4:3576697-3576716 | Msa0664560:intron | 30.0% | |
| GAAACTAGACTTATGTGATT+TGG | - | chr4_4:3576783-3576802 | Msa0664560:intron | 30.0% | |
| ! | GTTTTTGATGAAGTTATACG+AGG | - | chr4_4:3577135-3577154 | Msa0664560:intron | 30.0% |
| TGAAACAATTGAGACGTAAA+TGG | - | chr4_4:3577165-3577184 | Msa0664560:intron | 30.0% | |
| AAACATCTAAGAAGACAACT+GGG | + | chr4_4:3577366-3577385 | None:intergenic | 30.0% | |
| AAAACATCTAAGAAGACAAC+TGG | + | chr4_4:3577367-3577386 | None:intergenic | 30.0% | |
| ! | AGTTGTCTTCTTAGATGTTT+TGG | - | chr4_4:3577366-3577385 | Msa0664560:intron | 30.0% |
| ! | TGCAAAATTTTCCTTGTCTT+GGG | + | chr4_4:3577443-3577462 | None:intergenic | 30.0% |
| ! | TTGCAAAATTTTCCTTGTCT+TGG | + | chr4_4:3577444-3577463 | None:intergenic | 30.0% |
| ATGAATCATAGACTTCTCAA+AGG | + | chr4_4:3577599-3577618 | None:intergenic | 30.0% | |
| !!! | ATTTTAGAGCAACTGTATAC+CGG | - | chr4_4:3577627-3577646 | Msa0664560:intron | 30.0% |
| !! | TGTATACCGGATATTTTTGT+TGG | - | chr4_4:3577640-3577659 | Msa0664560:intron | 30.0% |
| ! | TTTGCTCAACAGATTTTCAA+TGG | - | chr4_4:3577692-3577711 | Msa0664560:intron | 30.0% |
| ! | ATTTTCCTTCAACACTCAAA+AGG | - | chr4_4:3577830-3577849 | Msa0664560:intron | 30.0% |
| ! | GCTCATTGATGTAATTTTCA+CGG | + | chr4_4:3578239-3578258 | None:intergenic | 30.0% |
| ! | GCAGTGTTTAATCTTTTTAG+GGG | - | chr4_4:3578285-3578304 | Msa0664560:intron | 30.0% |
| ! | GCTTTAGATCAAGATCAATT+GGG | - | chr4_4:3578330-3578349 | Msa0664560:intron | 30.0% |
| !! | CAATTGGGTATCTGAAATTT+TGG | - | chr4_4:3578345-3578364 | Msa0664560:intron | 30.0% |
| ! | TGTTTTGCAAAGTCTGAATT+TGG | - | chr4_4:3578398-3578417 | Msa0664560:intron | 30.0% |
| !! | TATCTGTTTCGTGTTTTGTT+TGG | - | chr4_4:3578473-3578492 | Msa0664560:CDS | 30.0% |
| GGAAGGTTTGTGAATAAGTA+GGG | + | chr4_4:3575893-3575912 | None:intergenic | 35.0% | |
| AAATTAGGGTTACATACCGA+GGG | + | chr4_4:3575958-3575977 | None:intergenic | 35.0% | |
| !! | AAATGGTGGATCAAAGATTC+AGG | + | chr4_4:3576014-3576033 | None:intergenic | 35.0% |
| ! | TTCTCAAGAGTATGAGGATA+AGG | - | chr4_4:3576329-3576348 | Msa0664560:CDS | 35.0% |
| CGGATTTATAGTGATAGTTC+TGG | - | chr4_4:3576399-3576418 | Msa0664560:intron | 35.0% | |
| ! | TGGATTTTATGTTGATCCAG+AGG | - | chr4_4:3576527-3576546 | Msa0664560:CDS | 35.0% |
| GCGAATAATAAACAAGAGCT+TGG | + | chr4_4:3576553-3576572 | None:intergenic | 35.0% | |
| ! | TCAGATTGGATTAGAGTGTT+AGG | - | chr4_4:3576608-3576627 | Msa0664560:intron | 35.0% |
| AACATTAGACTAGAGAGAGT+TGG | - | chr4_4:3576731-3576750 | Msa0664560:intron | 35.0% | |
| ACATTAGACTAGAGAGAGTT+GGG | - | chr4_4:3576732-3576751 | Msa0664560:intron | 35.0% | |
| ACTTATAGTAGAAAAGACGG+TGG | - | chr4_4:3576761-3576780 | Msa0664560:intron | 35.0% | |
| AGTCAAATCACTAGATGTAG+AGG | - | chr4_4:3576864-3576883 | Msa0664560:intron | 35.0% | |
| ! | GCAAAATTTTCCTTGTCTTG+GGG | + | chr4_4:3577442-3577461 | None:intergenic | 35.0% |
| TTGTTGGTATAAGAGCAGTT+TGG | - | chr4_4:3577656-3577675 | Msa0664560:intron | 35.0% | |
| ATCTGTTGAGCAAACACATA+AGG | + | chr4_4:3577686-3577705 | None:intergenic | 35.0% | |
| AACAATGAACATGTTGCACA+GGG | - | chr4_4:3577739-3577758 | Msa0664560:intron | 35.0% | |
| ! | TTGAGCCTTATGTGACTTAT+GGG | - | chr4_4:3577762-3577781 | Msa0664560:intron | 35.0% |
| ACATACCCATAAGTCACATA+AGG | + | chr4_4:3577770-3577789 | None:intergenic | 35.0% | |
| ! | ACCCAAATTTGAAGAGTGTA+AGG | - | chr4_4:3577873-3577892 | Msa0664560:CDS | 35.0% |
| CCCTTACACTCTTCAAATTT+GGG | + | chr4_4:3577877-3577896 | None:intergenic | 35.0% | |
| ! | CCCAAATTTGAAGAGTGTAA+GGG | - | chr4_4:3577874-3577893 | Msa0664560:CDS | 35.0% |
| TCCCTTACACTCTTCAAATT+TGG | + | chr4_4:3577878-3577897 | None:intergenic | 35.0% | |
| ! | ATAATTGAGTTGTCAGTGAG+AGG | + | chr4_4:3577947-3577966 | None:intergenic | 35.0% |
| TGACAACTCAATTATTGAGC+AGG | - | chr4_4:3577952-3577971 | Msa0664560:intron | 35.0% | |
| GGATAAGATCTTCAATGCAT+AGG | + | chr4_4:3578086-3578105 | None:intergenic | 35.0% | |
| TTGTTTGCTTCCTTGAAATG+TGG | + | chr4_4:3578129-3578148 | None:intergenic | 35.0% | |
| ATTACATCAATGAGCTCATC+AGG | - | chr4_4:3578244-3578263 | Msa0664560:intron | 35.0% | |
| !! | GGCTTTAGATCAAGATCAAT+TGG | - | chr4_4:3578329-3578348 | Msa0664560:intron | 35.0% |
| GGGAAGGTTTGTGAATAAGT+AGG | + | chr4_4:3575894-3575913 | None:intergenic | 40.0% | |
| GAAATTAGGGTTACATACCG+AGG | + | chr4_4:3575959-3575978 | None:intergenic | 40.0% | |
| TGTGTTGAAGAAGCAGAACA+GGG | - | chr4_4:3576209-3576228 | Msa0664560:CDS | 40.0% | |
| ! | GCAGTATTCTCAAGAGTATG+AGG | - | chr4_4:3576323-3576342 | Msa0664560:CDS | 40.0% |
| CTCACTAATCAGTTGTGTTG+TGG | - | chr4_4:3576440-3576459 | Msa0664560:intron | 40.0% | |
| CATTAGACTAGAGAGAGTTG+GGG | - | chr4_4:3576733-3576752 | Msa0664560:intron | 40.0% | |
| ATTAGACTAGAGAGAGTTGG+GGG | - | chr4_4:3576734-3576753 | Msa0664560:intron | 40.0% | |
| AGGAGAGTAGATTAGACAAC+AGG | - | chr4_4:3576840-3576859 | Msa0664560:intron | 40.0% | |
| GGAGAGTAGATTAGACAACA+GGG | - | chr4_4:3576841-3576860 | Msa0664560:intron | 40.0% | |
| CTTATCCCACTAAGTGAGAT+CGG | + | chr4_4:3577000-3577019 | None:intergenic | 40.0% | |
| TCACTTAGTGGGATAAGGTT+TGG | - | chr4_4:3577003-3577022 | Msa0664560:intron | 40.0% | |
| CCTAATCCAATCTGAATCGA+CGG | + | chr4_4:3577045-3577064 | None:intergenic | 40.0% | |
| !! | CGTCGATTCAGATTGGATTA+GGG | - | chr4_4:3577043-3577062 | Msa0664560:intron | 40.0% |
| !! | ATAAGGCGTTGTTAGCTTAG+CGG | - | chr4_4:3577111-3577130 | Msa0664560:intron | 40.0% |
| ! | TGCCTTGTTGTGTTTGTAGT+TGG | - | chr4_4:3577546-3577565 | Msa0664560:intron | 40.0% |
| ! | GCCTTGTTGTGTTTGTAGTT+GGG | - | chr4_4:3577547-3577566 | Msa0664560:intron | 40.0% |
| ACCCAACTACAAACACAACA+AGG | + | chr4_4:3577551-3577570 | None:intergenic | 40.0% | |
| CAACAATGAACATGTTGCAC+AGG | - | chr4_4:3577738-3577757 | Msa0664560:intron | 40.0% | |
| ! | GTTGAGCCTTATGTGACTTA+TGG | - | chr4_4:3577761-3577780 | Msa0664560:intron | 40.0% |
| !!! | GAAAGCCTTTTGAGTGTTGA+AGG | + | chr4_4:3577838-3577857 | None:intergenic | 40.0% |
| AGGAAGCAAACAACTTCCTT+TGG | - | chr4_4:3578136-3578155 | Msa0664560:CDS | 40.0% | |
| AATGGAGCCTTAAGCTTGAA+CGG | + | chr4_4:3578162-3578181 | None:intergenic | 40.0% | |
| TTCAAGCTTAAGGCTCCATT+GGG | - | chr4_4:3578162-3578181 | Msa0664560:CDS | 40.0% | |
| TTCTTCTTTAAGCCACCCAA+TGG | + | chr4_4:3578180-3578199 | None:intergenic | 40.0% | |
| AAGAGGAACCACTATGTTGA+AGG | - | chr4_4:3578198-3578217 | Msa0664560:CDS | 40.0% | |
| ! | GATTTAAAGCTTATACCCGC+AGG | - | chr4_4:3578532-3578551 | Msa0664560:CDS | 40.0% |
| GGAAATTCATTTACACCTGC+GGG | + | chr4_4:3578550-3578569 | None:intergenic | 40.0% | |
| GGGAAATTCATTTACACCTG+CGG | + | chr4_4:3578551-3578570 | None:intergenic | 40.0% | |
| AATGACTCTGCAGGTGCAAA+GGG | + | chr4_4:3575927-3575946 | None:intergenic | 45.0% | |
| TGCTTCTTCAACACAGACTC+AGG | + | chr4_4:3576204-3576223 | None:intergenic | 45.0% | |
| CTGTGTTGAAGAAGCAGAAC+AGG | - | chr4_4:3576208-3576227 | Msa0664560:CDS | 45.0% | |
| AGCAGAACAGGGAAGAACAA+TGG | - | chr4_4:3576220-3576239 | Msa0664560:CDS | 45.0% | |
| GCAGAACAGGGAAGAACAAT+GGG | - | chr4_4:3576221-3576240 | Msa0664560:CDS | 45.0% | |
| GAGAACCGTAAGCTGATCTA+TGG | - | chr4_4:3576291-3576310 | Msa0664560:CDS | 45.0% | |
| !! | GTTGATTAGTTTGAAGCGCG+AGG | - | chr4_4:3576491-3576510 | Msa0664560:CDS | 45.0% |
| ATAAACAAGAGCTTGGCCTC+TGG | + | chr4_4:3576546-3576565 | None:intergenic | 45.0% | |
| ACATGTAGAGTGAAGACCTG+TGG | - | chr4_4:3576806-3576825 | Msa0664560:intron | 45.0% | |
| ! | GACCTGTGGATTTTGTAGCA+AGG | - | chr4_4:3576820-3576839 | Msa0664560:intron | 45.0% |
| CTCCTTGCTACAAAATCCAC+AGG | + | chr4_4:3576825-3576844 | None:intergenic | 45.0% | |
| ACTAAGTGAGATCGGCTACA+TGG | + | chr4_4:3576992-3577011 | None:intergenic | 45.0% | |
| ATGTAGCCGATCTCACTTAG+TGG | - | chr4_4:3576991-3577010 | Msa0664560:intron | 45.0% | |
| TGTAGCCGATCTCACTTAGT+GGG | - | chr4_4:3576992-3577011 | Msa0664560:intron | 45.0% | |
| CGATCTCACTTAGTGGGATA+AGG | - | chr4_4:3576998-3577017 | Msa0664560:intron | 45.0% | |
| !! | TGTTGTCCGTCGATTCAGAT+TGG | - | chr4_4:3577036-3577055 | Msa0664560:intron | 45.0% |
| !! | CCGTCGATTCAGATTGGATT+AGG | - | chr4_4:3577042-3577061 | Msa0664560:intron | 45.0% |
| GCAACTGTTTCGATTGAGAC+AGG | - | chr4_4:3577460-3577479 | Msa0664560:intron | 45.0% | |
| AGGGAACTCATCTACAAACG+TGG | - | chr4_4:3577893-3577912 | Msa0664560:CDS | 45.0% | |
| GGGAACTCATCTACAAACGT+GGG | - | chr4_4:3577894-3577913 | Msa0664560:CDS | 45.0% | |
| CTCATCTACAAACGTGGGTA+TGG | - | chr4_4:3577899-3577918 | Msa0664560:CDS | 45.0% | |
| ! | ACTTGCTTTGATGACCCTCA+GGG | - | chr4_4:3578042-3578061 | Msa0664560:intron | 45.0% |
| ATCCACGAGATCTTGACTGT+TGG | - | chr4_4:3578102-3578121 | Msa0664560:CDS | 45.0% | |
| GACTGTTGGACCACATTTCA+AGG | - | chr4_4:3578116-3578135 | Msa0664560:CDS | 45.0% | |
| GTTCAAGCTTAAGGCTCCAT+TGG | - | chr4_4:3578161-3578180 | Msa0664560:CDS | 45.0% | |
| TGGGTGGCTTAAAGAAGAAG+AGG | - | chr4_4:3578181-3578200 | Msa0664560:CDS | 45.0% | |
| AGGAACCACTATGTTGAAGG+CGG | - | chr4_4:3578201-3578220 | Msa0664560:CDS | 45.0% | |
| GGGCTTGTCAGCAAATAGTG+AGG | + | chr4_4:3575858-3575877 | None:intergenic | 50.0% | |
| GAATGACTCTGCAGGTGCAA+AGG | + | chr4_4:3575928-3575947 | None:intergenic | 50.0% | |
| GAGGAAGTGAATGACTCTGC+AGG | + | chr4_4:3575936-3575955 | None:intergenic | 50.0% | |
| GAGTCATTCACTTCCTCCCT+CGG | - | chr4_4:3575939-3575958 | Msa0664560:three_prime_UTR | 50.0% | |
| TTAGGGTTACATACCGAGGG+AGG | + | chr4_4:3575955-3575974 | None:intergenic | 50.0% | |
| ! | CAGGGAAGAACAATGGGCTT+TGG | - | chr4_4:3576227-3576246 | Msa0664560:CDS | 50.0% |
| ACCGTAAGCTGATCTATGGC+AGG | - | chr4_4:3576295-3576314 | Msa0664560:CDS | 50.0% | |
| CCCTGCCATAGATCAGCTTA+CGG | + | chr4_4:3576299-3576318 | None:intergenic | 50.0% | |
| CCGTAAGCTGATCTATGGCA+GGG | - | chr4_4:3576296-3576315 | Msa0664560:CDS | 50.0% | |
| GTCACTGCAGTGCTCTTGTT+TGG | - | chr4_4:3576362-3576381 | Msa0664560:intron | 50.0% | |
| TTTCCTTGTCTTGGGGTCCA+TGG | + | chr4_4:3577435-3577454 | None:intergenic | 50.0% | |
| GTGGGTATGGAAAGCTAGAC+AGG | - | chr4_4:3577912-3577931 | Msa0664560:CDS | 50.0% | |
| ! | GACTTGCTTTGATGACCCTC+AGG | - | chr4_4:3578041-3578060 | Msa0664560:intron | 50.0% |
| ! | TTTGATGACCCTCAGGGACT+GGG | - | chr4_4:3578048-3578067 | Msa0664560:intron | 50.0% |
| GTCCAACAGTCAAGATCTCG+TGG | + | chr4_4:3578107-3578126 | None:intergenic | 50.0% | |
| CCTTAAGCTTGAACGGCCAA+AGG | + | chr4_4:3578155-3578174 | None:intergenic | 50.0% | |
| CCTTTGGCCGTTCAAGCTTA+AGG | - | chr4_4:3578152-3578171 | Msa0664560:CDS | 50.0% | |
| AAGCTTAAGGCTCCATTGGG+TGG | - | chr4_4:3578165-3578184 | Msa0664560:CDS | 50.0% | |
| CATCACCGCCTTCAACATAG+TGG | + | chr4_4:3578209-3578228 | None:intergenic | 50.0% | |
| TATGTTGAAGGCGGTGATGC+TGG | - | chr4_4:3578210-3578229 | Msa0664560:CDS | 50.0% | |
| ! | AAAGGGTTTTCGCTGCGGGA+AGG | + | chr4_4:3575910-3575929 | None:intergenic | 55.0% |
| ! | GTGCAAAGGGTTTTCGCTGC+GGG | + | chr4_4:3575914-3575933 | None:intergenic | 55.0% |
| ! | GGTGCAAAGGGTTTTCGCTG+CGG | + | chr4_4:3575915-3575934 | None:intergenic | 55.0% |
| AAGCGCGAGGCTAAGCTGAA+AGG | - | chr4_4:3576504-3576523 | Msa0664560:CDS | 55.0% | |
| ATGCCATGGACCCCAAGACA+AGG | - | chr4_4:3577429-3577448 | Msa0664560:intron | 55.0% | |
| ! | CTTTGATGACCCTCAGGGAC+TGG | - | chr4_4:3578047-3578066 | Msa0664560:intron | 55.0% |
| CATGCTTTCCCAGTCCCTGA+GGG | + | chr4_4:3578059-3578078 | None:intergenic | 55.0% | |
| CGCGAGGCTAAGCTGAAAGG+TGG | - | chr4_4:3576507-3576526 | Msa0664560:CDS | 60.0% | |
| CCATGCTTTCCCAGTCCCTG+AGG | + | chr4_4:3578060-3578079 | None:intergenic | 60.0% | |
| CCTCAGGGACTGGGAAAGCA+TGG | - | chr4_4:3578057-3578076 | Msa0664560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3575849 | 3578570 | 3575849 | ID=Msa0664560;Name=Msa0664560 |
| chr4_4 | mRNA | 3575849 | 3578570 | 3575849 | ID=Msa0664560-mRNA-1;Parent=Msa0664560;Name=Msa0664560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.83|0.71|1|0.83|0.85|7|292|274 |
| chr4_4 | exon | 3575849 | 3576356 | 3575849 | ID=Msa0664560-mRNA-1:exon:1183;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3576446 | 3576548 | 3576446 | ID=Msa0664560-mRNA-1:exon:1182;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3576636 | 3576715 | 3576636 | ID=Msa0664560-mRNA-1:exon:1181;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3576938 | 3576995 | 3576938 | ID=Msa0664560-mRNA-1:exon:1180;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3577860 | 3577936 | 3577860 | ID=Msa0664560-mRNA-1:exon:1179;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3578069 | 3578247 | 3578069 | ID=Msa0664560-mRNA-1:exon:1178;Parent=Msa0664560-mRNA-1 |
| chr4_4 | exon | 3578459 | 3578570 | 3578459 | ID=Msa0664560-mRNA-1:exon:1177;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3578459 | 3578570 | 3578459 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3578069 | 3578247 | 3578069 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3577860 | 3577936 | 3577860 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3576938 | 3576995 | 3576938 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3576636 | 3576715 | 3576636 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3576446 | 3576548 | 3576446 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | CDS | 3576141 | 3576356 | 3576141 | ID=Msa0664560-mRNA-1:cds;Parent=Msa0664560-mRNA-1 |
| chr4_4 | three_prime_UTR | 3575849 | 3576140 | 3575849 | ID=Msa0664560-mRNA-1:three_prime_utr;Parent=Msa0664560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
