AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0534890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534890 MtrunA17_Chr4g0008791 99.103 223 2 0 1 223 1 223 2.07e-162 447
Msa0534890 MtrunA17_Chr7g0240631 62.332 223 84 0 1 223 1 223 6.53e-107 307
Msa0534890 MtrunA17_Chr7g0240681 65.158 221 76 1 1 220 1 221 6.00e-105 302
Msa0534890 MtrunA17_Chr7g0240561 61.435 223 86 0 1 223 1 223 6.81e-104 299
Msa0534890 MtrunA17_Chr7g0240551 63.470 219 80 0 1 219 1 219 2.59e-103 298
Msa0534890 MtrunA17_Chr7g0240641 61.435 223 86 0 1 223 1 223 3.68e-103 297
Msa0534890 MtrunA17_Chr7g0240581 61.883 223 85 0 1 223 1 223 7.99e-103 296
Msa0534890 MtrunA17_Chr7g0240691 62.385 218 81 1 7 223 37 254 3.28e-99 288
Msa0534890 MtrunA17_Chr7g0240541 61.290 217 84 0 1 217 1 217 2.04e-96 280
Msa0534890 MtrunA17_Chr7g0240531 60.829 217 85 0 1 217 1 217 1.01e-94 276
Msa0534890 MtrunA17_Chr4g0008781 60.094 213 83 2 4 215 5 216 7.46e-94 273
Msa0534890 MtrunA17_Chr7g0240511 58.744 223 87 1 1 223 1 218 1.07e-93 273
Msa0534890 MtrunA17_Chr7g0240611 59.641 223 86 1 1 223 1 219 3.83e-92 269
Msa0534890 MtrunA17_Chr7g0240521 60.268 224 88 1 1 223 8 231 9.11e-91 266
Msa0534890 MtrunA17_Chr7g0240671 57.005 207 85 1 8 214 5 207 3.62e-81 241
Msa0534890 MtrunA17_Chr7g0240661 60.748 214 80 1 1 214 1 210 5.73e-80 239
Msa0534890 MtrunA17_Chr7g0240651 56.306 222 93 1 1 222 1 218 4.05e-78 234
Msa0534890 MtrunA17_Chr1g0196771 47.887 213 106 3 7 216 3 213 1.37e-65 202
Msa0534890 MtrunA17_Chr6g0483141 45.933 209 111 2 6 213 2 209 2.35e-65 201
Msa0534890 MtrunA17_Chr8g0379581 46.544 217 108 3 7 219 5 217 3.75e-65 201
Msa0534890 MtrunA17_Chr3g0132581 44.643 224 120 3 1 223 1 221 2.34e-62 194
Msa0534890 MtrunA17_Chr1g0212301 46.977 215 109 3 6 216 2 215 2.65e-61 191
Msa0534890 MtrunA17_Chr8g0379561 44.954 218 118 2 7 223 6 222 2.15e-60 189
Msa0534890 MtrunA17_Chr4g0029341 44.340 212 114 2 7 215 4 214 1.34e-59 186
Msa0534890 MtrunA17_Chr5g0417011 41.441 222 122 3 1 215 1 221 2.93e-58 183
Msa0534890 MtrunA17_Chr1g0196661 41.629 221 125 2 6 223 2 221 9.27e-56 177
Msa0534890 MtrunA17_Chr1g0196691 41.176 221 127 1 6 223 27 247 8.95e-55 175
Msa0534890 MtrunA17_Chr1g0196711 42.381 210 117 2 6 212 2 210 2.51e-54 173
Msa0534890 MtrunA17_Chr1g0196721 42.654 211 117 2 8 215 3 212 3.67e-53 170
Msa0534890 MtrunA17_Chr5g0415411 41.892 222 121 2 7 220 5 226 3.81e-51 165
Msa0534890 MtrunA17_Chr2g0312771 42.308 208 115 4 7 212 4 208 4.13e-49 160
Msa0534890 MtrunA17_Chr2g0312751 41.627 209 117 4 7 213 4 209 1.57e-48 158
Msa0534890 MtrunA17_Chr8g0363751 41.256 223 121 5 1 215 1 221 2.50e-48 158
Msa0534890 MtrunA17_Chr2g0312731 43.415 205 111 5 7 209 4 205 1.35e-46 153
Msa0534890 MtrunA17_Chr3g0107731 38.498 213 126 4 2 212 4 213 3.54e-43 145
Msa0534890 MtrunA17_Chr2g0312791 40.299 201 116 3 7 205 4 202 4.40e-43 144
Msa0534890 MtrunA17_Chr2g0312781 39.234 209 122 4 1 207 15 220 2.64e-42 143
Msa0534890 MtrunA17_Chr2g0312811 40.952 210 117 5 7 212 4 210 9.02e-42 141
Msa0534890 MtrunA17_Chr2g0312721 39.524 210 120 6 7 213 4 209 6.34e-41 139
Msa0534890 MtrunA17_Chr8g0357241 38.942 208 122 4 7 212 4 208 6.84e-41 139
Msa0534890 MtrunA17_Chr8g0357211 40.201 199 114 4 7 203 4 199 7.45e-41 139
Msa0534890 MtrunA17_Chr2g0312681 38.863 211 124 4 7 215 4 211 2.19e-40 137
Msa0534890 MtrunA17_Chr3g0107741 36.967 211 128 4 4 212 6 213 5.63e-40 136
Msa0534890 MtrunA17_Chr5g0433801 40.580 207 118 4 8 212 7 210 6.03e-40 136
Msa0534890 MtrunA17_Chr4g0069471 44.318 176 94 4 5 177 23 197 1.06e-39 135
Msa0534890 MtrunA17_Chr2g0312691 40.758 211 120 4 7 215 4 211 1.59e-38 132
Msa0534890 MtrunA17_Chr8g0391631 43.226 155 80 4 6 152 20 174 8.48e-36 124
Msa0534890 MtrunA17_Chr2g0312711 38.710 217 127 5 6 220 3 215 3.70e-34 121
Msa0534890 MtrunA17_Chr2g0313561 50.769 65 31 1 51 114 2 66 2.19e-17 73.9
Msa0534890 MtrunA17_Chr1g0181861 27.354 223 136 7 6 217 26 233 2.80e-11 61.2
Msa0534890 MtrunA17_Chr5g0415421 39.726 73 41 1 31 100 11 83 3.30e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0534890 AT3G09270.1 50.000 218 105 4 8 222 7 223 4.75e-78 234
Msa0534890 AT2G29420.1 48.815 211 106 2 7 216 9 218 1.87e-72 220
Msa0534890 AT2G29490.1 48.804 209 104 3 1 207 1 208 5.71e-63 196
Msa0534890 AT2G29480.1 49.763 211 99 4 1 207 1 208 3.01e-62 194
Msa0534890 AT2G29460.1 44.053 227 120 4 1 223 1 224 8.47e-59 185
Msa0534890 AT2G29450.1 46.602 206 108 2 4 207 3 208 3.37e-58 184
Msa0534890 AT2G29470.1 43.810 210 114 4 1 207 1 209 9.04e-55 175
Msa0534890 AT2G29440.1 41.333 225 128 4 1 223 1 223 1.94e-54 174
Msa0534890 AT1G59670.1 43.836 219 115 3 4 214 3 221 1.86e-52 169
Msa0534890 AT1G59700.1 43.836 219 115 3 4 214 3 221 7.73e-52 167
Msa0534890 AT1G10370.1 41.014 217 121 2 5 214 3 219 2.20e-50 164
Msa0534890 AT1G69920.1 40.183 219 123 4 8 218 35 253 1.84e-48 159
Msa0534890 AT1G27130.1 38.073 218 127 3 8 217 7 224 2.67e-48 158
Msa0534890 AT1G74590.1 38.667 225 121 4 1 214 1 219 3.74e-48 158
Msa0534890 AT5G62480.1 37.557 221 127 3 5 215 6 225 1.26e-47 157
Msa0534890 AT1G78380.1 42.105 209 116 4 6 212 3 208 8.58e-47 154
Msa0534890 AT1G69930.1 36.486 222 135 2 2 217 7 228 1.33e-46 154
Msa0534890 AT1G78340.1 40.865 208 118 4 7 212 4 208 1.61e-46 154
Msa0534890 AT1G78370.1 40.976 205 116 4 10 212 7 208 5.49e-46 152
Msa0534890 AT1G78320.1 41.546 207 114 5 7 210 4 206 3.13e-45 150
Msa0534890 AT1G17170.1 41.038 212 119 5 7 216 4 211 1.39e-44 149
Msa0534890 AT1G10360.1 38.140 215 126 3 7 214 5 219 2.61e-44 148
Msa0534890 AT1G53680.1 40.097 207 119 4 1 204 1 205 3.20e-43 145
Msa0534890 AT1G27140.1 38.073 218 126 3 8 216 7 224 6.21e-43 145
Msa0534890 AT1G17180.1 39.423 208 121 4 7 212 4 208 1.29e-42 144
Msa0534890 AT1G78360.1 38.571 210 123 5 6 212 3 209 2.86e-39 135
Msa0534890 AT3G43800.1 39.216 204 115 6 7 204 5 205 6.50e-39 134
Msa0534890 AT1G17190.1 38.785 214 124 5 1 212 1 209 8.83e-38 131
Msa0534890 AT1G78320.2 35.437 206 101 5 7 210 4 179 7.68e-30 110
Msa0534890 AT5G62480.2 30.455 220 118 4 5 215 6 199 3.22e-29 108
Msa0534890 AT5G62480.3 30.455 220 117 4 5 215 6 198 5.89e-29 108

Find 68 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATAATGAGAATAATTT+TGG 0.150075 4_1:+10626763 Msa0534890:three_prime_UTR
GTTCATTCTCAAGAAATTCT+AGG 0.255826 4_1:-10626264 None:intergenic
CTTAGAAATAGACCAATTTC+AGG 0.260630 4_1:+10626530 Msa0534890:exon
TTGAACTTCTCCTTGATCTT+TGG 0.266733 4_1:-10625458 None:intergenic
CAAAATGTGGATGAGAATTT+CGG 0.268770 4_1:-10625402 None:intergenic
TGCTGCATCACTCCTGAAAT+TGG 0.274481 4_1:-10626542 None:intergenic
GAACTCAAGCACAAATTCTT+TGG 0.284917 4_1:+10626283 Msa0534890:CDS
TTGGATTAAGAGAGATAAAT+AGG 0.295255 4_1:+10626578 Msa0534890:three_prime_UTR
AGAAAGCCTTGGCTCGATTT+TGG 0.296277 4_1:+10625731 Msa0534890:CDS
TAAGGTTGTTGAGGGAAAAT+AGG 0.325386 4_1:-10625706 None:intergenic
CAGGCACCTTCTTGTGAATA+GGG 0.332659 4_1:-10625606 None:intergenic
CGAGCCAAGGCTTTCTCATA+AGG 0.351441 4_1:-10625724 None:intergenic
AAGCCGAGGAGTCCATCTTT+AGG 0.352220 4_1:-10626475 None:intergenic
AATTTCCTAAGCTCTATAAA+TGG 0.358102 4_1:+10626407 Msa0534890:CDS
CAAGGAGAAGTTCAATTGTT+AGG 0.359110 4_1:+10625466 Msa0534890:CDS
ACAGGCACCTTCTTGTGAAT+AGG 0.360494 4_1:-10625607 None:intergenic
ATTTGCACCCTTCGAACAAA+TGG 0.368308 4_1:-10625502 None:intergenic
GGGAGATTCTCTTTCACAAT+AGG 0.380629 4_1:-10626451 None:intergenic
CTTACATTGAAGAAAATCTA+AGG 0.391102 4_1:+10625554 Msa0534890:CDS
CATGCAGCCTTTGATATTGC+TGG 0.393495 4_1:-10626190 None:intergenic
CAGCACTAATCGCTGCATAT+CGG 0.395026 4_1:-10626507 None:intergenic
AGCCGAGGAGTCCATCTTTA+GGG 0.398880 4_1:-10626474 None:intergenic
GATTGCACTACATATCAAAT+AGG 0.401905 4_1:-10626724 None:intergenic
ATGTTTCATCAATGTATTCA+AGG 0.424371 4_1:-10625672 None:intergenic
AGAATATCTAAACTTTGAAA+TGG 0.426500 4_1:+10625435 Msa0534890:exon
CTTTCTCATAAGGTTGTTGA+GGG 0.434221 4_1:-10625714 None:intergenic
CAAATTGCTCTAAAACTAAA+GGG 0.440385 4_1:+10625520 Msa0534890:CDS
GCAAATTGCTCTAAAACTAA+AGG 0.446586 4_1:+10625519 Msa0534890:CDS
GATGAGAATTTCGGTTCAAA+CGG 0.451991 4_1:-10625393 None:intergenic
GAAGTTCAATTGTTAGGTGT+AGG 0.453999 4_1:+10625472 Msa0534890:CDS
TGACTCCATTTATAGAGCTT+AGG 0.457524 4_1:-10626412 None:intergenic
TTCATTCTCAAGAAATTCTA+GGG 0.459545 4_1:-10626263 None:intergenic
TGAAGAAGCTGTAGGGTTGA+AGG 0.470540 4_1:+10626369 Msa0534890:CDS
AGCACTAATCGCTGCATATC+GGG 0.470893 4_1:-10626506 None:intergenic
GTTCAATTGTTAGGTGTAGG+AGG 0.480588 4_1:+10625475 Msa0534890:CDS
ATGAGAATTTCGGTTCAAAC+GGG 0.486751 4_1:-10625392 None:intergenic
TCTAAGTTCTTCACAAAATG+TGG 0.487003 4_1:-10625415 None:intergenic
TTTGAAATGGCCAAAGATCA+AGG 0.500048 4_1:+10625448 Msa0534890:exon
TTTGCACCCTTCGAACAAAT+GGG 0.505097 4_1:-10625501 None:intergenic
GATCACAAGGGACTCAGCTA+AGG 0.517350 4_1:-10625650 None:intergenic
AACAAAGAAGAACGTGAGAA+AGG 0.523741 4_1:+10626220 Msa0534890:CDS
GCTTTCTCATAAGGTTGTTG+AGG 0.531026 4_1:-10625715 None:intergenic
CTCAAGCACAAATTCTTTGG+TGG 0.534226 4_1:+10626286 Msa0534890:CDS
ATTTATCTCTCTTAATCCAA+CGG 0.537575 4_1:-10626575 None:intergenic
CAGCCTTTGATATTGCTGGC+AGG 0.552662 4_1:-10626186 None:intergenic
GCAGCATGCTCAAGAACCGT+TGG 0.558617 4_1:+10626559 Msa0534890:three_prime_UTR
GAGGAAGCCCATTTGTTCGA+AGG 0.559814 4_1:+10625494 Msa0534890:CDS
CAATGTATTCAAGGATCACA+AGG 0.561254 4_1:-10625663 None:intergenic
CTGTGATTGAAGAAGCTGTA+GGG 0.562529 4_1:+10626362 Msa0534890:CDS
GTCGAGGTTCATTGATGACA+AGG 0.566263 4_1:+10625753 Msa0534890:CDS
CCTACAGCTTCTTCAATCAC+AGG 0.567289 4_1:-10626361 None:intergenic
TTGAATACATTGATGAAACA+TGG 0.571451 4_1:+10625674 Msa0534890:CDS
AGGAAGCCCATTTGTTCGAA+GGG 0.574450 4_1:+10625495 Msa0534890:CDS
GTGCAATCTTAATGATCGAA+AGG 0.588043 4_1:+10626739 Msa0534890:three_prime_UTR
ACAACCTTATGAGAAAGCCT+TGG 0.593342 4_1:+10625720 Msa0534890:CDS
ATCACAAGGGACTCAGCTAA+GGG 0.601842 4_1:-10625649 None:intergenic
CAGCAATATCAAAGGCTGCA+TGG 0.606136 4_1:+10626191 Msa0534890:CDS
GTATAACCCTATTCACAAGA+AGG 0.611526 4_1:+10625600 Msa0534890:CDS
TGAATACATTGATGAAACAT+GGG 0.611722 4_1:+10625675 Msa0534890:CDS
TGGAGAAAACATTAGCATTG+TGG 0.621375 4_1:+10626306 Msa0534890:CDS
CCTGTGATTGAAGAAGCTGT+AGG 0.624586 4_1:+10626361 Msa0534890:CDS
GATCCTGCCAGCAATATCAA+AGG 0.632199 4_1:+10626183 Msa0534890:intron
CTACAGCTTCTTCAATCACA+GGG 0.633707 4_1:-10626360 None:intergenic
CCGAGGAGTCCATCTTTAGG+GGG 0.638246 4_1:-10626472 None:intergenic
CCTCGACCAAAATCGAGCCA+AGG 0.642750 4_1:-10625737 None:intergenic
CGAGGAGTCCATCTTTAGGG+GGG 0.675615 4_1:-10626471 None:intergenic
GCCGAGGAGTCCATCTTTAG+GGG 0.696295 4_1:-10626473 None:intergenic
AATGTATTCAAGGATCACAA+GGG 0.737483 4_1:-10625662 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATAATGTGAAATTTT+TGG - chr4_1:10625930-10625949 None:intergenic 10.0%
!!! AATTTCACATTATTTTTAAA+AGG + chr4_1:10625932-10625951 Msa0534890:intron 10.0%
!!! TAAAAATAATGTGAAATTTT+TGG - chr4_1:10625930-10625949 None:intergenic 10.0%
!!! AATTTCACATTATTTTTAAA+AGG + chr4_1:10625932-10625951 Msa0534890:intron 10.0%
!! AATGAAATATATTATGATGA+TGG - chr4_1:10626067-10626086 None:intergenic 15.0%
!!! TTTTTTGTTGAAAAGATATT+AGG - chr4_1:10626103-10626122 None:intergenic 15.0%
!!! TGTTGTTTCATAATATTATT+AGG - chr4_1:10626139-10626158 None:intergenic 15.0%
!!! TCTAATAATGAGAATAATTT+TGG + chr4_1:10626763-10626782 Msa0534890:three_prime_UTR 15.0%
!! AATGAAATATATTATGATGA+TGG - chr4_1:10626067-10626086 None:intergenic 15.0%
!!! TTTTTTGTTGAAAAGATATT+AGG - chr4_1:10626103-10626122 None:intergenic 15.0%
!!! TGTTGTTTCATAATATTATT+AGG - chr4_1:10626139-10626158 None:intergenic 15.0%
!!! TCTAATAATGAGAATAATTT+TGG + chr4_1:10626763-10626782 Msa0534890:three_prime_UTR 15.0%
!!! AGAATATCTAAACTTTGAAA+TGG + chr4_1:10625435-10625454 Msa0534890:exon 20.0%
!!! AGAATATCTAAACTTTGAAA+TGG + chr4_1:10625435-10625454 Msa0534890:exon 20.0%
!!! CAAATTGCTCTAAAACTAAA+GGG + chr4_1:10625520-10625539 Msa0534890:CDS 25.0%
! CTTACATTGAAGAAAATCTA+AGG + chr4_1:10625554-10625573 Msa0534890:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG - chr4_1:10625675-10625694 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_1:10625674-10625693 Msa0534890:CDS 25.0%
! TGAATACATTGATGAAACAT+GGG + chr4_1:10625675-10625694 Msa0534890:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG - chr4_1:10626043-10626062 None:intergenic 25.0%
! TTCATTCTCAAGAAATTCTA+GGG - chr4_1:10626266-10626285 None:intergenic 25.0%
! AATTTCCTAAGCTCTATAAA+TGG + chr4_1:10626407-10626426 Msa0534890:CDS 25.0%
! ATTTATCTCTCTTAATCCAA+CGG - chr4_1:10626578-10626597 None:intergenic 25.0%
! TTGGATTAAGAGAGATAAAT+AGG + chr4_1:10626578-10626597 Msa0534890:three_prime_UTR 25.0%
!!! CAAATTGCTCTAAAACTAAA+GGG + chr4_1:10625520-10625539 Msa0534890:CDS 25.0%
! CTTACATTGAAGAAAATCTA+AGG + chr4_1:10625554-10625573 Msa0534890:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG - chr4_1:10625675-10625694 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_1:10625674-10625693 Msa0534890:CDS 25.0%
! TGAATACATTGATGAAACAT+GGG + chr4_1:10625675-10625694 Msa0534890:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG - chr4_1:10626043-10626062 None:intergenic 25.0%
! TTCATTCTCAAGAAATTCTA+GGG - chr4_1:10626266-10626285 None:intergenic 25.0%
! AATTTCCTAAGCTCTATAAA+TGG + chr4_1:10626407-10626426 Msa0534890:CDS 25.0%
! ATTTATCTCTCTTAATCCAA+CGG - chr4_1:10626578-10626597 None:intergenic 25.0%
! TTGGATTAAGAGAGATAAAT+AGG + chr4_1:10626578-10626597 Msa0534890:three_prime_UTR 25.0%
!!! TTCAAACGGGTTTTATTCTT+TGG - chr4_1:10625382-10625401 None:intergenic 30.0%
CAAAATGTGGATGAGAATTT+CGG - chr4_1:10625405-10625424 None:intergenic 30.0%
TCTAAGTTCTTCACAAAATG+TGG - chr4_1:10625418-10625437 None:intergenic 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG + chr4_1:10625519-10625538 Msa0534890:CDS 30.0%
TTTCCATTATGGACAAAAAC+AGG - chr4_1:10625628-10625647 None:intergenic 30.0%
AATGTATTCAAGGATCACAA+GGG - chr4_1:10625665-10625684 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG - chr4_1:10626003-10626022 None:intergenic 30.0%
TTTCATGATGTTTCATACAC+AGG - chr4_1:10626004-10626023 None:intergenic 30.0%
GTTCATTCTCAAGAAATTCT+AGG - chr4_1:10626267-10626286 None:intergenic 30.0%
CTTAGAAATAGACCAATTTC+AGG + chr4_1:10626530-10626549 Msa0534890:exon 30.0%
GATTGCACTACATATCAAAT+AGG - chr4_1:10626727-10626746 None:intergenic 30.0%
!!! TTCAAACGGGTTTTATTCTT+TGG - chr4_1:10625382-10625401 None:intergenic 30.0%
CAAAATGTGGATGAGAATTT+CGG - chr4_1:10625405-10625424 None:intergenic 30.0%
TCTAAGTTCTTCACAAAATG+TGG - chr4_1:10625418-10625437 None:intergenic 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG + chr4_1:10625519-10625538 Msa0534890:CDS 30.0%
TTTCCATTATGGACAAAAAC+AGG - chr4_1:10625628-10625647 None:intergenic 30.0%
AATGTATTCAAGGATCACAA+GGG - chr4_1:10625665-10625684 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG - chr4_1:10626003-10626022 None:intergenic 30.0%
TTTCATGATGTTTCATACAC+AGG - chr4_1:10626004-10626023 None:intergenic 30.0%
GTTCATTCTCAAGAAATTCT+AGG - chr4_1:10626267-10626286 None:intergenic 30.0%
CTTAGAAATAGACCAATTTC+AGG + chr4_1:10626530-10626549 Msa0534890:exon 30.0%
GATTGCACTACATATCAAAT+AGG - chr4_1:10626727-10626746 None:intergenic 30.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG - chr4_1:10625376-10625395 None:intergenic 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG - chr4_1:10625377-10625396 None:intergenic 35.0%
ATGAGAATTTCGGTTCAAAC+GGG - chr4_1:10625395-10625414 None:intergenic 35.0%
GATGAGAATTTCGGTTCAAA+CGG - chr4_1:10625396-10625415 None:intergenic 35.0%
! TTTGAAATGGCCAAAGATCA+AGG + chr4_1:10625448-10625467 Msa0534890:exon 35.0%
TTGAACTTCTCCTTGATCTT+TGG - chr4_1:10625461-10625480 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG + chr4_1:10625466-10625485 Msa0534890:CDS 35.0%
GAAGTTCAATTGTTAGGTGT+AGG + chr4_1:10625472-10625491 Msa0534890:CDS 35.0%
GTATAACCCTATTCACAAGA+AGG + chr4_1:10625600-10625619 Msa0534890:CDS 35.0%
CAATGTATTCAAGGATCACA+AGG - chr4_1:10625666-10625685 None:intergenic 35.0%
TAAGGTTGTTGAGGGAAAAT+AGG - chr4_1:10625709-10625728 None:intergenic 35.0%
CTTTCTCATAAGGTTGTTGA+GGG - chr4_1:10625717-10625736 None:intergenic 35.0%
! CTCGTCTAAATTTTCGCTTT+AGG + chr4_1:10625956-10625975 Msa0534890:intron 35.0%
CTTTAGGTCTTAGCATACAT+TGG + chr4_1:10625972-10625991 Msa0534890:intron 35.0%
AACAAAGAAGAACGTGAGAA+AGG + chr4_1:10626220-10626239 Msa0534890:CDS 35.0%
GAACTCAAGCACAAATTCTT+TGG + chr4_1:10626283-10626302 Msa0534890:CDS 35.0%
TGGAGAAAACATTAGCATTG+TGG + chr4_1:10626306-10626325 Msa0534890:CDS 35.0%
!! CTGCTTCATACTTAGCTTTT+TGG + chr4_1:10626335-10626354 Msa0534890:CDS 35.0%
TGACTCCATTTATAGAGCTT+AGG - chr4_1:10626415-10626434 None:intergenic 35.0%
GTGCAATCTTAATGATCGAA+AGG + chr4_1:10626739-10626758 Msa0534890:three_prime_UTR 35.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG - chr4_1:10625376-10625395 None:intergenic 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG - chr4_1:10625377-10625396 None:intergenic 35.0%
ATGAGAATTTCGGTTCAAAC+GGG - chr4_1:10625395-10625414 None:intergenic 35.0%
GATGAGAATTTCGGTTCAAA+CGG - chr4_1:10625396-10625415 None:intergenic 35.0%
! TTTGAAATGGCCAAAGATCA+AGG + chr4_1:10625448-10625467 Msa0534890:exon 35.0%
TTGAACTTCTCCTTGATCTT+TGG - chr4_1:10625461-10625480 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG + chr4_1:10625466-10625485 Msa0534890:CDS 35.0%
GAAGTTCAATTGTTAGGTGT+AGG + chr4_1:10625472-10625491 Msa0534890:CDS 35.0%
GTATAACCCTATTCACAAGA+AGG + chr4_1:10625600-10625619 Msa0534890:CDS 35.0%
CAATGTATTCAAGGATCACA+AGG - chr4_1:10625666-10625685 None:intergenic 35.0%
TAAGGTTGTTGAGGGAAAAT+AGG - chr4_1:10625709-10625728 None:intergenic 35.0%
CTTTCTCATAAGGTTGTTGA+GGG - chr4_1:10625717-10625736 None:intergenic 35.0%
! CTCGTCTAAATTTTCGCTTT+AGG + chr4_1:10625956-10625975 Msa0534890:intron 35.0%
CTTTAGGTCTTAGCATACAT+TGG + chr4_1:10625972-10625991 Msa0534890:intron 35.0%
AACAAAGAAGAACGTGAGAA+AGG + chr4_1:10626220-10626239 Msa0534890:CDS 35.0%
GAACTCAAGCACAAATTCTT+TGG + chr4_1:10626283-10626302 Msa0534890:CDS 35.0%
TGGAGAAAACATTAGCATTG+TGG + chr4_1:10626306-10626325 Msa0534890:CDS 35.0%
!! CTGCTTCATACTTAGCTTTT+TGG + chr4_1:10626335-10626354 Msa0534890:CDS 35.0%
TGACTCCATTTATAGAGCTT+AGG - chr4_1:10626415-10626434 None:intergenic 35.0%
GTGCAATCTTAATGATCGAA+AGG + chr4_1:10626739-10626758 Msa0534890:three_prime_UTR 35.0%
GTTCAATTGTTAGGTGTAGG+AGG + chr4_1:10625475-10625494 Msa0534890:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG - chr4_1:10625504-10625523 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG - chr4_1:10625505-10625524 None:intergenic 40.0%
!!! GTGCCTGTTTTTGTCCATAA+TGG + chr4_1:10625622-10625641 Msa0534890:CDS 40.0%
! CAGCTAAGGGTTTTCCATTA+TGG - chr4_1:10625639-10625658 None:intergenic 40.0%
GCTTTCTCATAAGGTTGTTG+AGG - chr4_1:10625718-10625737 None:intergenic 40.0%
ACAACCTTATGAGAAAGCCT+TGG + chr4_1:10625720-10625739 Msa0534890:CDS 40.0%
TGTATCTACCAGAGTCATAG+TGG + chr4_1:10625827-10625846 Msa0534890:intron 40.0%
ACGATAAACCACTATGACTC+TGG - chr4_1:10625838-10625857 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG + chr4_1:10626286-10626305 Msa0534890:CDS 40.0%
CTACAGCTTCTTCAATCACA+GGG - chr4_1:10626363-10626382 None:intergenic 40.0%
CTGTGATTGAAGAAGCTGTA+GGG + chr4_1:10626362-10626381 Msa0534890:CDS 40.0%
GGGAGATTCTCTTTCACAAT+AGG - chr4_1:10626454-10626473 None:intergenic 40.0%
GTTCAATTGTTAGGTGTAGG+AGG + chr4_1:10625475-10625494 Msa0534890:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG - chr4_1:10625504-10625523 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG - chr4_1:10625505-10625524 None:intergenic 40.0%
!!! GTGCCTGTTTTTGTCCATAA+TGG + chr4_1:10625622-10625641 Msa0534890:CDS 40.0%
! CAGCTAAGGGTTTTCCATTA+TGG - chr4_1:10625639-10625658 None:intergenic 40.0%
GCTTTCTCATAAGGTTGTTG+AGG - chr4_1:10625718-10625737 None:intergenic 40.0%
ACAACCTTATGAGAAAGCCT+TGG + chr4_1:10625720-10625739 Msa0534890:CDS 40.0%
TGTATCTACCAGAGTCATAG+TGG + chr4_1:10625827-10625846 Msa0534890:intron 40.0%
ACGATAAACCACTATGACTC+TGG - chr4_1:10625838-10625857 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG + chr4_1:10626286-10626305 Msa0534890:CDS 40.0%
CTACAGCTTCTTCAATCACA+GGG - chr4_1:10626363-10626382 None:intergenic 40.0%
CTGTGATTGAAGAAGCTGTA+GGG + chr4_1:10626362-10626381 Msa0534890:CDS 40.0%
GGGAGATTCTCTTTCACAAT+AGG - chr4_1:10626454-10626473 None:intergenic 40.0%
AGGAAGCCCATTTGTTCGAA+GGG + chr4_1:10625495-10625514 Msa0534890:CDS 45.0%
CAGGCACCTTCTTGTGAATA+GGG - chr4_1:10625609-10625628 None:intergenic 45.0%
ACAGGCACCTTCTTGTGAAT+AGG - chr4_1:10625610-10625629 None:intergenic 45.0%
ATCACAAGGGACTCAGCTAA+GGG - chr4_1:10625652-10625671 None:intergenic 45.0%
!! AGAAAGCCTTGGCTCGATTT+TGG + chr4_1:10625731-10625750 Msa0534890:CDS 45.0%
! GTCGAGGTTCATTGATGACA+AGG + chr4_1:10625753-10625772 Msa0534890:CDS 45.0%
GGTCTTAGCATACATTGGAC+CGG + chr4_1:10625977-10625996 Msa0534890:intron 45.0%
TGATGTTTCATACACAGGGC+CGG - chr4_1:10625999-10626018 None:intergenic 45.0%
GATCCTGCCAGCAATATCAA+AGG + chr4_1:10626183-10626202 Msa0534890:intron 45.0%
CATGCAGCCTTTGATATTGC+TGG - chr4_1:10626193-10626212 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG + chr4_1:10626191-10626210 Msa0534890:CDS 45.0%
CCTACAGCTTCTTCAATCAC+AGG - chr4_1:10626364-10626383 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG + chr4_1:10626361-10626380 Msa0534890:CDS 45.0%
TGAAGAAGCTGTAGGGTTGA+AGG + chr4_1:10626369-10626388 Msa0534890:CDS 45.0%
ATCGGGATTTGAAAAAGCCG+AGG - chr4_1:10626492-10626511 None:intergenic 45.0%
AGCACTAATCGCTGCATATC+GGG - chr4_1:10626509-10626528 None:intergenic 45.0%
CAGCACTAATCGCTGCATAT+CGG - chr4_1:10626510-10626529 None:intergenic 45.0%
TGCTGCATCACTCCTGAAAT+TGG - chr4_1:10626545-10626564 None:intergenic 45.0%
AGGAAGCCCATTTGTTCGAA+GGG + chr4_1:10625495-10625514 Msa0534890:CDS 45.0%
CAGGCACCTTCTTGTGAATA+GGG - chr4_1:10625609-10625628 None:intergenic 45.0%
ACAGGCACCTTCTTGTGAAT+AGG - chr4_1:10625610-10625629 None:intergenic 45.0%
ATCACAAGGGACTCAGCTAA+GGG - chr4_1:10625652-10625671 None:intergenic 45.0%
!! AGAAAGCCTTGGCTCGATTT+TGG + chr4_1:10625731-10625750 Msa0534890:CDS 45.0%
! GTCGAGGTTCATTGATGACA+AGG + chr4_1:10625753-10625772 Msa0534890:CDS 45.0%
GGTCTTAGCATACATTGGAC+CGG + chr4_1:10625977-10625996 Msa0534890:intron 45.0%
TGATGTTTCATACACAGGGC+CGG - chr4_1:10625999-10626018 None:intergenic 45.0%
GATCCTGCCAGCAATATCAA+AGG + chr4_1:10626183-10626202 Msa0534890:intron 45.0%
CATGCAGCCTTTGATATTGC+TGG - chr4_1:10626193-10626212 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG + chr4_1:10626191-10626210 Msa0534890:CDS 45.0%
CCTACAGCTTCTTCAATCAC+AGG - chr4_1:10626364-10626383 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG + chr4_1:10626361-10626380 Msa0534890:CDS 45.0%
TGAAGAAGCTGTAGGGTTGA+AGG + chr4_1:10626369-10626388 Msa0534890:CDS 45.0%
ATCGGGATTTGAAAAAGCCG+AGG - chr4_1:10626492-10626511 None:intergenic 45.0%
AGCACTAATCGCTGCATATC+GGG - chr4_1:10626509-10626528 None:intergenic 45.0%
CAGCACTAATCGCTGCATAT+CGG - chr4_1:10626510-10626529 None:intergenic 45.0%
TGCTGCATCACTCCTGAAAT+TGG - chr4_1:10626545-10626564 None:intergenic 45.0%
GAGGAAGCCCATTTGTTCGA+AGG + chr4_1:10625494-10625513 Msa0534890:CDS 50.0%
GATCACAAGGGACTCAGCTA+AGG - chr4_1:10625653-10625672 None:intergenic 50.0%
CGAGCCAAGGCTTTCTCATA+AGG - chr4_1:10625727-10625746 None:intergenic 50.0%
CAGCCTTTGATATTGCTGGC+AGG - chr4_1:10626189-10626208 None:intergenic 50.0%
GAGAATCTCCCCCCTAAAGA+TGG + chr4_1:10626463-10626482 Msa0534890:CDS 50.0%
AGCCGAGGAGTCCATCTTTA+GGG - chr4_1:10626477-10626496 None:intergenic 50.0%
AAGCCGAGGAGTCCATCTTT+AGG - chr4_1:10626478-10626497 None:intergenic 50.0%
GAGGAAGCCCATTTGTTCGA+AGG + chr4_1:10625494-10625513 Msa0534890:CDS 50.0%
GATCACAAGGGACTCAGCTA+AGG - chr4_1:10625653-10625672 None:intergenic 50.0%
CGAGCCAAGGCTTTCTCATA+AGG - chr4_1:10625727-10625746 None:intergenic 50.0%
CAGCCTTTGATATTGCTGGC+AGG - chr4_1:10626189-10626208 None:intergenic 50.0%
GAGAATCTCCCCCCTAAAGA+TGG + chr4_1:10626463-10626482 Msa0534890:CDS 50.0%
AGCCGAGGAGTCCATCTTTA+GGG - chr4_1:10626477-10626496 None:intergenic 50.0%
AAGCCGAGGAGTCCATCTTT+AGG - chr4_1:10626478-10626497 None:intergenic 50.0%
CCTCGACCAAAATCGAGCCA+AGG - chr4_1:10625740-10625759 None:intergenic 55.0%
!! CCTTGGCTCGATTTTGGTCG+AGG + chr4_1:10625737-10625756 Msa0534890:CDS 55.0%
! CGAGGAGTCCATCTTTAGGG+GGG - chr4_1:10626474-10626493 None:intergenic 55.0%
CCGAGGAGTCCATCTTTAGG+GGG - chr4_1:10626475-10626494 None:intergenic 55.0%
! CCCCCTAAAGATGGACTCCT+CGG + chr4_1:10626472-10626491 Msa0534890:CDS 55.0%
GCCGAGGAGTCCATCTTTAG+GGG - chr4_1:10626476-10626495 None:intergenic 55.0%
GCAGCATGCTCAAGAACCGT+TGG + chr4_1:10626559-10626578 Msa0534890:three_prime_UTR 55.0%
CCTCGACCAAAATCGAGCCA+AGG - chr4_1:10625740-10625759 None:intergenic 55.0%
!! CCTTGGCTCGATTTTGGTCG+AGG + chr4_1:10625737-10625756 Msa0534890:CDS 55.0%
! CGAGGAGTCCATCTTTAGGG+GGG - chr4_1:10626474-10626493 None:intergenic 55.0%
CCGAGGAGTCCATCTTTAGG+GGG - chr4_1:10626475-10626494 None:intergenic 55.0%
! CCCCCTAAAGATGGACTCCT+CGG + chr4_1:10626472-10626491 Msa0534890:CDS 55.0%
GCCGAGGAGTCCATCTTTAG+GGG - chr4_1:10626476-10626495 None:intergenic 55.0%
GCAGCATGCTCAAGAACCGT+TGG + chr4_1:10626559-10626578 Msa0534890:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10625371 10626789 10625371 ID=Msa0534890;Name=Msa0534890
chr4_1 mRNA 10625371 10626789 10625371 ID=Msa0534890-mRNA-1;Parent=Msa0534890;Name=Msa0534890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83|1|1|1|1|1|2|255|223
chr4_1 exon 10625371 10625774 10625371 ID=Msa0534890-mRNA-1:exon:3382;Parent=Msa0534890-mRNA-1
chr4_1 exon 10626184 10626789 10626184 ID=Msa0534890-mRNA-1:exon:3383;Parent=Msa0534890-mRNA-1
chr4_1 five_prime_UTR 10625371 10625453 10625371 ID=Msa0534890-mRNA-1:five_prime_utr;Parent=Msa0534890-mRNA-1
chr4_1 CDS 10625454 10625774 10625454 ID=Msa0534890-mRNA-1:cds;Parent=Msa0534890-mRNA-1
chr4_1 CDS 10626184 10626534 10626184 ID=Msa0534890-mRNA-1:cds;Parent=Msa0534890-mRNA-1
chr4_1 three_prime_UTR 10626535 10626789 10626535 ID=Msa0534890-mRNA-1:three_prime_utr;Parent=Msa0534890-mRNA-1
Gene Sequence

>Msa0534890

ATGGCCAAAGATCAAGGAGAAGTTCAATTGTTAGGTGTAGGAGGAAGCCCATTTGTTCGAAGGGTGCAAATTGCTCTAAAACTAAAGGGTATTGAATACACTTACATTGAAGAAAATCTAAGGAACAAAAGTGATCTTCTTCTTAAGTATAACCCTATTCACAAGAAGGTGCCTGTTTTTGTCCATAATGGAAAACCCTTAGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAAACATGGGAGAATTATCCTATTTTCCCTCAACAACCTTATGAGAAAGCCTTGGCTCGATTTTGGTCGAGGTTCATTGATGACAAGATCCTGCCAGCAATATCAAAGGCTGCATGGACAGTGAACAAAGAAGAACGTGAGAAAGGCATTGAAGAATCATTGCAAGCCCTAGAATTTCTTGAGAATGAACTCAAGCACAAATTCTTTGGTGGAGAAAACATTAGCATTGTGGACATTGCTGCTTCATACTTAGCTTTTTGGCTCCCTGTGATTGAAGAAGCTGTAGGGTTGAAGGTTCTTAGCAGTGACAAATTTCCTAAGCTCTATAAATGGAGTCAAGAATTCAACAATCATCCTATTGTGAAAGAGAATCTCCCCCCTAAAGATGGACTCCTCGGCTTTTTCAAATCCCGATATGCAGCGATTAGTGCTGCTTAG

Protein sequence

>Msa0534890

MAKDQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPLAESLVILEYIDETWENYPIFPQQPYEKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQALEFLENELKHKFFGGENISIVDIAASYLAFWLPVIEEAVGLKVLSSDKFPKLYKWSQEFNNHPIVKENLPPKDGLLGFFKSRYAAISAA*