AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0631340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631340 MtrunA17_Chr4g0008791 98.222 225 4 0 1 225 1 225 6.80e-163 448
Msa0631340 MtrunA17_Chr7g0240631 62.222 225 85 0 1 225 1 225 9.10e-108 309
Msa0631340 MtrunA17_Chr7g0240681 64.706 221 77 1 1 220 1 221 1.57e-104 301
Msa0631340 MtrunA17_Chr7g0240641 61.333 225 87 0 1 225 1 225 6.46e-104 299
Msa0631340 MtrunA17_Chr7g0240561 60.987 223 87 0 1 223 1 223 2.53e-103 298
Msa0631340 MtrunA17_Chr7g0240551 63.014 219 81 0 1 219 1 219 8.18e-103 296
Msa0631340 MtrunA17_Chr7g0240581 61.435 223 86 0 1 223 1 223 2.29e-102 295
Msa0631340 MtrunA17_Chr7g0240691 62.273 220 82 1 7 225 37 256 5.05e-100 291
Msa0631340 MtrunA17_Chr7g0240541 60.829 217 85 0 1 217 1 217 7.41e-96 279
Msa0631340 MtrunA17_Chr7g0240531 60.369 217 86 0 1 217 1 217 2.45e-94 275
Msa0631340 MtrunA17_Chr4g0008781 59.624 213 84 2 4 215 5 216 1.79e-93 273
Msa0631340 MtrunA17_Chr7g0240511 58.296 223 88 1 1 223 1 218 3.45e-93 272
Msa0631340 MtrunA17_Chr7g0240611 59.556 225 87 1 1 225 1 221 4.30e-93 272
Msa0631340 MtrunA17_Chr7g0240521 59.821 224 89 1 1 223 8 231 4.07e-90 265
Msa0631340 MtrunA17_Chr7g0240671 56.522 207 86 1 8 214 5 207 1.14e-80 240
Msa0631340 MtrunA17_Chr7g0240661 60.280 214 81 1 1 214 1 210 1.23e-79 238
Msa0631340 MtrunA17_Chr7g0240651 56.000 225 95 1 1 225 1 221 6.25e-79 236
Msa0631340 MtrunA17_Chr1g0196771 47.059 221 112 3 7 224 3 221 1.62e-66 204
Msa0631340 MtrunA17_Chr6g0483141 45.714 210 112 2 5 213 1 209 1.30e-65 202
Msa0631340 MtrunA17_Chr8g0379581 45.740 223 113 3 7 225 5 223 6.09e-65 200
Msa0631340 MtrunA17_Chr3g0132581 44.889 225 120 3 1 224 1 222 2.61e-63 196
Msa0631340 MtrunA17_Chr1g0212301 47.442 215 108 3 6 216 2 215 3.64e-62 193
Msa0631340 MtrunA17_Chr8g0379561 45.000 220 119 2 7 225 6 224 7.37e-61 190
Msa0631340 MtrunA17_Chr4g0029341 44.811 212 113 2 7 215 4 214 8.43e-60 187
Msa0631340 MtrunA17_Chr5g0417011 40.991 222 123 3 1 215 1 221 3.95e-58 183
Msa0631340 MtrunA17_Chr1g0196661 41.778 225 124 3 6 224 2 225 3.95e-56 178
Msa0631340 MtrunA17_Chr1g0196691 41.892 222 126 1 6 224 27 248 1.13e-55 177
Msa0631340 MtrunA17_Chr1g0196711 42.857 210 116 2 6 212 2 210 1.53e-54 174
Msa0631340 MtrunA17_Chr1g0196721 42.180 211 118 2 8 215 3 212 6.13e-53 170
Msa0631340 MtrunA17_Chr5g0415411 41.892 222 121 2 7 220 5 226 4.59e-51 165
Msa0631340 MtrunA17_Chr2g0312771 41.346 208 117 4 7 212 4 208 2.08e-48 158
Msa0631340 MtrunA17_Chr8g0363751 40.807 223 122 5 1 215 1 221 3.32e-48 158
Msa0631340 MtrunA17_Chr2g0312751 40.670 209 119 4 7 213 4 209 8.59e-48 156
Msa0631340 MtrunA17_Chr2g0312731 43.415 205 111 5 7 209 4 205 2.80e-46 152
Msa0631340 MtrunA17_Chr2g0312791 40.796 201 115 3 7 205 4 202 2.33e-43 145
Msa0631340 MtrunA17_Chr3g0107731 38.967 213 125 4 2 212 4 213 2.37e-43 145
Msa0631340 MtrunA17_Chr2g0312811 41.429 210 116 5 7 212 4 210 1.93e-42 143
Msa0631340 MtrunA17_Chr2g0312781 39.234 209 122 4 1 207 15 220 2.48e-42 143
Msa0631340 MtrunA17_Chr2g0312721 39.524 210 120 6 7 213 4 209 9.74e-41 138
Msa0631340 MtrunA17_Chr2g0312681 38.863 211 124 4 7 215 4 211 1.62e-40 138
Msa0631340 MtrunA17_Chr8g0357241 38.462 208 123 4 7 212 4 208 1.96e-40 137
Msa0631340 MtrunA17_Chr8g0357211 39.698 199 115 4 7 203 4 199 2.09e-40 137
Msa0631340 MtrunA17_Chr4g0069471 44.318 176 94 4 5 177 23 197 5.69e-40 136
Msa0631340 MtrunA17_Chr3g0107741 37.441 211 127 4 4 212 6 213 6.19e-40 136
Msa0631340 MtrunA17_Chr5g0433801 40.097 207 119 4 8 212 7 210 7.97e-40 136
Msa0631340 MtrunA17_Chr2g0312691 40.758 211 120 4 7 215 4 211 1.25e-38 133
Msa0631340 MtrunA17_Chr8g0391631 43.226 155 80 4 6 152 20 174 8.54e-36 124
Msa0631340 MtrunA17_Chr2g0312711 38.710 217 127 5 6 220 3 215 2.76e-34 122
Msa0631340 MtrunA17_Chr2g0313561 50.769 65 31 1 51 114 2 66 2.30e-17 73.9
Msa0631340 MtrunA17_Chr1g0181861 27.803 223 135 7 6 217 26 233 8.09e-12 62.8
Msa0631340 MtrunA17_Chr5g0415421 39.726 73 41 1 31 100 11 83 3.43e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0631340 AT3G09270.1 50.459 218 104 4 8 222 7 223 6.29e-78 234
Msa0631340 AT2G29420.1 47.032 219 114 2 7 224 9 226 1.27e-72 220
Msa0631340 AT2G29490.1 48.804 209 104 3 1 207 1 208 4.28e-63 196
Msa0631340 AT2G29480.1 49.763 211 99 4 1 207 1 208 2.28e-62 194
Msa0631340 AT2G29460.1 44.053 227 120 4 1 223 1 224 6.28e-59 186
Msa0631340 AT2G29450.1 46.117 206 109 2 4 207 3 208 3.98e-58 183
Msa0631340 AT2G29470.1 43.810 210 114 4 1 207 1 209 7.14e-55 175
Msa0631340 AT2G29440.1 41.333 225 128 4 1 223 1 223 1.60e-54 174
Msa0631340 AT1G59670.1 44.749 219 113 4 4 214 3 221 1.29e-52 169
Msa0631340 AT1G59700.1 43.723 231 121 4 4 225 3 233 1.37e-52 169
Msa0631340 AT1G10370.1 42.202 218 117 4 5 214 3 219 9.80e-51 164
Msa0631340 AT1G74590.1 38.559 236 127 5 1 224 1 230 1.70e-48 159
Msa0631340 AT1G27130.1 38.073 218 127 3 8 217 7 224 2.04e-48 159
Msa0631340 AT1G69920.1 39.726 219 124 4 8 218 35 253 5.86e-48 158
Msa0631340 AT5G62480.1 38.009 221 126 3 5 215 6 225 8.26e-48 157
Msa0631340 AT1G78380.1 42.584 209 115 4 6 212 3 208 3.69e-47 155
Msa0631340 AT1G69930.1 36.486 222 135 2 2 217 7 228 1.18e-46 154
Msa0631340 AT1G78340.1 40.865 208 118 4 7 212 4 208 4.05e-46 152
Msa0631340 AT1G78370.1 40.976 205 116 4 10 212 7 208 8.48e-46 152
Msa0631340 AT1G78320.1 42.029 207 113 5 7 210 4 206 1.71e-45 151
Msa0631340 AT1G17170.1 41.509 212 118 5 7 216 4 211 5.42e-45 150
Msa0631340 AT1G10360.1 38.140 215 126 3 7 214 5 219 1.83e-44 149
Msa0631340 AT1G53680.1 39.614 207 120 4 1 204 1 205 3.69e-43 145
Msa0631340 AT1G17180.1 39.904 208 120 4 7 212 4 208 6.27e-43 144
Msa0631340 AT1G27140.1 38.073 218 126 3 8 216 7 224 6.48e-43 145
Msa0631340 AT1G78360.1 39.048 210 122 5 6 212 3 209 1.40e-39 136
Msa0631340 AT3G43800.1 38.725 204 116 6 7 204 5 205 1.08e-38 134
Msa0631340 AT1G17190.1 39.252 214 123 5 1 212 1 209 6.38e-38 132
Msa0631340 AT1G78320.2 35.922 206 100 5 7 210 4 179 4.06e-30 110
Msa0631340 AT5G62480.2 30.909 220 117 4 5 215 6 199 2.07e-29 109
Msa0631340 AT5G62480.3 30.909 220 116 4 5 215 6 198 4.11e-29 108

Find 63 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTCCTACTTAGCTTTC+TGG 0.061163 4_3:+14257675 Msa0631340:CDS
AGTGAACATTGCTTTATTTC+TGG 0.116991 4_3:-14257959 None:intergenic
TCTAATAATGAGAATGATTT+TGG 0.153587 4_3:+14258103 Msa0631340:three_prime_UTR
TTGAACTTCTCCTTGATCTT+TGG 0.266733 4_3:-14256799 None:intergenic
CAAAATGTGGATGAGAATTT+CGG 0.268770 4_3:-14256743 None:intergenic
GTTCATTCTCAAGAAATTCT+AGG 0.270401 4_3:-14257604 None:intergenic
GAACTCAAGCACAAATTCTT+TGG 0.284917 4_3:+14257623 Msa0631340:CDS
AGAAAGCCTTGGCTCGATTT+TGG 0.296277 4_3:+14257072 Msa0631340:CDS
TAAGGTTGTTGAGGGAAAAT+AGG 0.325386 4_3:-14257047 None:intergenic
CAGGCACCTTCTTGTGAATA+GGG 0.332659 4_3:-14256947 None:intergenic
GTGAACATTGCTTTATTTCT+GGG 0.335093 4_3:-14257958 None:intergenic
AACCCGAGGAGTCCATCTTT+TGG 0.345813 4_3:-14257815 None:intergenic
CGAGCCAAGGCTTTCTCATA+AGG 0.351441 4_3:-14257065 None:intergenic
AATTTCCTAAGCTCTATAAA+TGG 0.358102 4_3:+14257747 Msa0631340:CDS
CAAGGAGAAGTTCAATTGTT+AGG 0.359110 4_3:+14256807 Msa0631340:CDS
ACAGGCACCTTCTTGTGAAT+AGG 0.360494 4_3:-14256948 None:intergenic
ATTTGCACCCTTCGAACAAA+TGG 0.368308 4_3:-14256843 None:intergenic
GGGAGATTCTCTTTCACAAT+AGG 0.380629 4_3:-14257791 None:intergenic
CTTACATTGAAGAAAATCTA+AGG 0.391102 4_3:+14256895 Msa0631340:CDS
CATGCAGCCTTTGATATTGC+TGG 0.393495 4_3:-14257530 None:intergenic
GATTGCACTACATATCAAAT+AGG 0.401905 4_3:-14258064 None:intergenic
ATGTTTCATCAATGTATTCA+AGG 0.424371 4_3:-14257013 None:intergenic
AGAATATCTAAACTTTGAAA+TGG 0.426500 4_3:+14256776 Msa0631340:exon
CTTTCTCATAAGGTTGTTGA+GGG 0.434221 4_3:-14257055 None:intergenic
CAAATTGCTCTAAAACTAAA+GGG 0.440385 4_3:+14256861 Msa0631340:CDS
GCAAATTGCTCTAAAACTAA+AGG 0.446586 4_3:+14256860 Msa0631340:CDS
GATGAGAATTTCGGTTCAAA+CGG 0.451991 4_3:-14256734 None:intergenic
GAAGTTCAATTGTTAGGTGT+AGG 0.453999 4_3:+14256813 Msa0631340:CDS
TGACTCCATTTATAGAGCTT+AGG 0.457524 4_3:-14257752 None:intergenic
TTCATTCTCAAGAAATTCTA+GGG 0.463279 4_3:-14257603 None:intergenic
CTTCGAAATAGACGGATTTG+AGG 0.466125 4_3:+14257870 Msa0631340:exon
GTTCAATTGTTAGGTGTAGG+AGG 0.480588 4_3:+14256816 Msa0631340:CDS
ATGAGAATTTCGGTTCAAAC+GGG 0.486751 4_3:-14256733 None:intergenic
TCTAAGTTCTTCACAAAATG+TGG 0.487003 4_3:-14256756 None:intergenic
TTTGAAATGGCCAAAGATCA+AGG 0.500048 4_3:+14256789 Msa0631340:exon
AGGAAGCCAGAAAGCTAAGT+AGG 0.500826 4_3:-14257681 None:intergenic
TTTGCACCCTTCGAACAAAT+GGG 0.505097 4_3:-14256842 None:intergenic
CCCCAAAAGATGGACTCCTC+GGG 0.511907 4_3:+14257813 Msa0631340:CDS
GATCACAAGGGACTCAGCTA+AGG 0.517350 4_3:-14256991 None:intergenic
AACAAAGAAGAACGTGAGAA+AGG 0.523741 4_3:+14257560 Msa0631340:CDS
GTGCAATCTTAATGATTGAA+AGG 0.527435 4_3:+14258079 Msa0631340:three_prime_UTR
GCTTTCTCATAAGGTTGTTG+AGG 0.531026 4_3:-14257056 None:intergenic
CTCAAGCACAAATTCTTTGG+TGG 0.534226 4_3:+14257626 Msa0631340:CDS
CTGTGATTGAAGAAGCTGTA+GGG 0.541030 4_3:+14257702 Msa0631340:CDS
CAGCCTTTGATATTGCTGGC+AGG 0.552662 4_3:-14257526 None:intergenic
GAGGAAGCCCATTTGTTCGA+AGG 0.559814 4_3:+14256835 Msa0631340:CDS
CAATGTATTCAAGGATCACA+AGG 0.561254 4_3:-14257004 None:intergenic
GTCGAGGTTCATTGATGACA+AGG 0.566263 4_3:+14257094 Msa0631340:CDS
GCTGCATGCTGCAGAGTCGT+TGG 0.569191 4_3:+14257899 Msa0631340:three_prime_UTR
TTGAATACATTGATGAAACA+TGG 0.571451 4_3:+14257015 Msa0631340:CDS
AGGAAGCCCATTTGTTCGAA+GGG 0.574450 4_3:+14256836 Msa0631340:CDS
ACAACCTTATGAGAAAGCCT+TGG 0.593342 4_3:+14257061 Msa0631340:CDS
TAGTGCTGCTTCGAAATAGA+CGG 0.596408 4_3:+14257862 Msa0631340:exon
CCTGTGATTGAAGAAGCTGT+AGG 0.598472 4_3:+14257701 Msa0631340:CDS
ATCACAAGGGACTCAGCTAA+GGG 0.601842 4_3:-14256990 None:intergenic
CAGCAATATCAAAGGCTGCA+TGG 0.606136 4_3:+14257531 Msa0631340:CDS
CCTACAGCTTCTTCAATCAC+AGG 0.610321 4_3:-14257701 None:intergenic
GTATAACCCTATTCACAAGA+AGG 0.611526 4_3:+14256941 Msa0631340:CDS
TGAATACATTGATGAAACAT+GGG 0.611722 4_3:+14257016 Msa0631340:CDS
TGGAGAAAACATTAGCATTG+TGG 0.621375 4_3:+14257646 Msa0631340:CDS
GATCCTGCCAGCAATATCAA+AGG 0.632199 4_3:+14257523 Msa0631340:intron
CCTCGACCAAAATCGAGCCA+AGG 0.642750 4_3:-14257078 None:intergenic
AATGTATTCAAGGATCACAA+GGG 0.737483 4_3:-14257003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATAATGTGAAATTTT+TGG - chr4_3:14257271-14257290 None:intergenic 10.0%
!!! AATTTCACATTATTTTTAAA+AGG + chr4_3:14257273-14257292 Msa0631340:intron 10.0%
!!! TAAAAATAATGTGAAATTTT+TGG - chr4_3:14257271-14257290 None:intergenic 10.0%
!!! AATTTCACATTATTTTTAAA+AGG + chr4_3:14257273-14257292 Msa0631340:intron 10.0%
!! AATGAAATATATTATGATGA+TGG - chr4_3:14257408-14257427 None:intergenic 15.0%
!!! TTTTTTGTTGAAAAGATATT+AGG - chr4_3:14257444-14257463 None:intergenic 15.0%
!!! TGTTGTTTCATAATATTATT+AGG - chr4_3:14257479-14257498 None:intergenic 15.0%
!! AATGAAATATATTATGATGA+TGG - chr4_3:14257408-14257427 None:intergenic 15.0%
!!! TTTTTTGTTGAAAAGATATT+AGG - chr4_3:14257444-14257463 None:intergenic 15.0%
!!! TGTTGTTTCATAATATTATT+AGG - chr4_3:14257479-14257498 None:intergenic 15.0%
!!! AGAATATCTAAACTTTGAAA+TGG + chr4_3:14256776-14256795 Msa0631340:exon 20.0%
!!! TCTAATAATGAGAATGATTT+TGG + chr4_3:14258103-14258122 Msa0631340:three_prime_UTR 20.0%
!!! AGAATATCTAAACTTTGAAA+TGG + chr4_3:14256776-14256795 Msa0631340:exon 20.0%
!!! TCTAATAATGAGAATGATTT+TGG + chr4_3:14258103-14258122 Msa0631340:three_prime_UTR 20.0%
!!! CAAATTGCTCTAAAACTAAA+GGG + chr4_3:14256861-14256880 Msa0631340:CDS 25.0%
! CTTACATTGAAGAAAATCTA+AGG + chr4_3:14256895-14256914 Msa0631340:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG - chr4_3:14257016-14257035 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_3:14257015-14257034 Msa0631340:CDS 25.0%
! TGAATACATTGATGAAACAT+GGG + chr4_3:14257016-14257035 Msa0631340:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG - chr4_3:14257384-14257403 None:intergenic 25.0%
! TTCATTCTCAAGAAATTCTA+GGG - chr4_3:14257606-14257625 None:intergenic 25.0%
! AATTTCCTAAGCTCTATAAA+TGG + chr4_3:14257747-14257766 Msa0631340:CDS 25.0%
!!! CAAATTGCTCTAAAACTAAA+GGG + chr4_3:14256861-14256880 Msa0631340:CDS 25.0%
! CTTACATTGAAGAAAATCTA+AGG + chr4_3:14256895-14256914 Msa0631340:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG - chr4_3:14257016-14257035 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG + chr4_3:14257015-14257034 Msa0631340:CDS 25.0%
! TGAATACATTGATGAAACAT+GGG + chr4_3:14257016-14257035 Msa0631340:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG - chr4_3:14257384-14257403 None:intergenic 25.0%
! TTCATTCTCAAGAAATTCTA+GGG - chr4_3:14257606-14257625 None:intergenic 25.0%
! AATTTCCTAAGCTCTATAAA+TGG + chr4_3:14257747-14257766 Msa0631340:CDS 25.0%
!!! TTCAAACGGGTTTTATTCTT+TGG - chr4_3:14256723-14256742 None:intergenic 30.0%
CAAAATGTGGATGAGAATTT+CGG - chr4_3:14256746-14256765 None:intergenic 30.0%
TCTAAGTTCTTCACAAAATG+TGG - chr4_3:14256759-14256778 None:intergenic 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG + chr4_3:14256860-14256879 Msa0631340:CDS 30.0%
TTTCCATTATGGACAAAAAC+AGG - chr4_3:14256969-14256988 None:intergenic 30.0%
AATGTATTCAAGGATCACAA+GGG - chr4_3:14257006-14257025 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG - chr4_3:14257344-14257363 None:intergenic 30.0%
TTTCATGATGTTTCATACAC+AGG - chr4_3:14257345-14257364 None:intergenic 30.0%
GTTCATTCTCAAGAAATTCT+AGG - chr4_3:14257607-14257626 None:intergenic 30.0%
!! GTGAACATTGCTTTATTTCT+GGG - chr4_3:14257961-14257980 None:intergenic 30.0%
!! AGTGAACATTGCTTTATTTC+TGG - chr4_3:14257962-14257981 None:intergenic 30.0%
GATTGCACTACATATCAAAT+AGG - chr4_3:14258067-14258086 None:intergenic 30.0%
GTGCAATCTTAATGATTGAA+AGG + chr4_3:14258079-14258098 Msa0631340:three_prime_UTR 30.0%
!!! TTCAAACGGGTTTTATTCTT+TGG - chr4_3:14256723-14256742 None:intergenic 30.0%
CAAAATGTGGATGAGAATTT+CGG - chr4_3:14256746-14256765 None:intergenic 30.0%
TCTAAGTTCTTCACAAAATG+TGG - chr4_3:14256759-14256778 None:intergenic 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG + chr4_3:14256860-14256879 Msa0631340:CDS 30.0%
TTTCCATTATGGACAAAAAC+AGG - chr4_3:14256969-14256988 None:intergenic 30.0%
AATGTATTCAAGGATCACAA+GGG - chr4_3:14257006-14257025 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG - chr4_3:14257344-14257363 None:intergenic 30.0%
TTTCATGATGTTTCATACAC+AGG - chr4_3:14257345-14257364 None:intergenic 30.0%
GTTCATTCTCAAGAAATTCT+AGG - chr4_3:14257607-14257626 None:intergenic 30.0%
!! GTGAACATTGCTTTATTTCT+GGG - chr4_3:14257961-14257980 None:intergenic 30.0%
!! AGTGAACATTGCTTTATTTC+TGG - chr4_3:14257962-14257981 None:intergenic 30.0%
GATTGCACTACATATCAAAT+AGG - chr4_3:14258067-14258086 None:intergenic 30.0%
GTGCAATCTTAATGATTGAA+AGG + chr4_3:14258079-14258098 Msa0631340:three_prime_UTR 30.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG - chr4_3:14256717-14256736 None:intergenic 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG - chr4_3:14256718-14256737 None:intergenic 35.0%
ATGAGAATTTCGGTTCAAAC+GGG - chr4_3:14256736-14256755 None:intergenic 35.0%
GATGAGAATTTCGGTTCAAA+CGG - chr4_3:14256737-14256756 None:intergenic 35.0%
! TTTGAAATGGCCAAAGATCA+AGG + chr4_3:14256789-14256808 Msa0631340:exon 35.0%
TTGAACTTCTCCTTGATCTT+TGG - chr4_3:14256802-14256821 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG + chr4_3:14256807-14256826 Msa0631340:CDS 35.0%
GAAGTTCAATTGTTAGGTGT+AGG + chr4_3:14256813-14256832 Msa0631340:CDS 35.0%
GTATAACCCTATTCACAAGA+AGG + chr4_3:14256941-14256960 Msa0631340:CDS 35.0%
CAATGTATTCAAGGATCACA+AGG - chr4_3:14257007-14257026 None:intergenic 35.0%
TAAGGTTGTTGAGGGAAAAT+AGG - chr4_3:14257050-14257069 None:intergenic 35.0%
CTTTCTCATAAGGTTGTTGA+GGG - chr4_3:14257058-14257077 None:intergenic 35.0%
! CTCGTCTAAATTTTCGCTTT+AGG + chr4_3:14257297-14257316 Msa0631340:intron 35.0%
CTTTAGGTCTTAGCATACAT+TGG + chr4_3:14257313-14257332 Msa0631340:intron 35.0%
AACAAAGAAGAACGTGAGAA+AGG + chr4_3:14257560-14257579 Msa0631340:CDS 35.0%
GAACTCAAGCACAAATTCTT+TGG + chr4_3:14257623-14257642 Msa0631340:CDS 35.0%
TGGAGAAAACATTAGCATTG+TGG + chr4_3:14257646-14257665 Msa0631340:CDS 35.0%
TGACTCCATTTATAGAGCTT+AGG - chr4_3:14257755-14257774 None:intergenic 35.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG - chr4_3:14256717-14256736 None:intergenic 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG - chr4_3:14256718-14256737 None:intergenic 35.0%
ATGAGAATTTCGGTTCAAAC+GGG - chr4_3:14256736-14256755 None:intergenic 35.0%
GATGAGAATTTCGGTTCAAA+CGG - chr4_3:14256737-14256756 None:intergenic 35.0%
! TTTGAAATGGCCAAAGATCA+AGG + chr4_3:14256789-14256808 Msa0631340:exon 35.0%
TTGAACTTCTCCTTGATCTT+TGG - chr4_3:14256802-14256821 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG + chr4_3:14256807-14256826 Msa0631340:CDS 35.0%
GAAGTTCAATTGTTAGGTGT+AGG + chr4_3:14256813-14256832 Msa0631340:CDS 35.0%
GTATAACCCTATTCACAAGA+AGG + chr4_3:14256941-14256960 Msa0631340:CDS 35.0%
CAATGTATTCAAGGATCACA+AGG - chr4_3:14257007-14257026 None:intergenic 35.0%
TAAGGTTGTTGAGGGAAAAT+AGG - chr4_3:14257050-14257069 None:intergenic 35.0%
CTTTCTCATAAGGTTGTTGA+GGG - chr4_3:14257058-14257077 None:intergenic 35.0%
! CTCGTCTAAATTTTCGCTTT+AGG + chr4_3:14257297-14257316 Msa0631340:intron 35.0%
CTTTAGGTCTTAGCATACAT+TGG + chr4_3:14257313-14257332 Msa0631340:intron 35.0%
AACAAAGAAGAACGTGAGAA+AGG + chr4_3:14257560-14257579 Msa0631340:CDS 35.0%
GAACTCAAGCACAAATTCTT+TGG + chr4_3:14257623-14257642 Msa0631340:CDS 35.0%
TGGAGAAAACATTAGCATTG+TGG + chr4_3:14257646-14257665 Msa0631340:CDS 35.0%
TGACTCCATTTATAGAGCTT+AGG - chr4_3:14257755-14257774 None:intergenic 35.0%
GTTCAATTGTTAGGTGTAGG+AGG + chr4_3:14256816-14256835 Msa0631340:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG - chr4_3:14256845-14256864 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG - chr4_3:14256846-14256865 None:intergenic 40.0%
!!! GTGCCTGTTTTTGTCCATAA+TGG + chr4_3:14256963-14256982 Msa0631340:CDS 40.0%
! CAGCTAAGGGTTTTCCATTA+TGG - chr4_3:14256980-14256999 None:intergenic 40.0%
GCTTTCTCATAAGGTTGTTG+AGG - chr4_3:14257059-14257078 None:intergenic 40.0%
ACAACCTTATGAGAAAGCCT+TGG + chr4_3:14257061-14257080 Msa0631340:CDS 40.0%
TGTATCTACCAGAGTCATAG+TGG + chr4_3:14257168-14257187 Msa0631340:intron 40.0%
ACGATAAACCACTATGACTC+TGG - chr4_3:14257179-14257198 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG + chr4_3:14257626-14257645 Msa0631340:CDS 40.0%
CTGTGATTGAAGAAGCTGTA+GGG + chr4_3:14257702-14257721 Msa0631340:CDS 40.0%
GGGAGATTCTCTTTCACAAT+AGG - chr4_3:14257794-14257813 None:intergenic 40.0%
ATCGAGATTTGAAAAACCCG+AGG - chr4_3:14257832-14257851 None:intergenic 40.0%
!! TAGTGCTGCTTCGAAATAGA+CGG + chr4_3:14257862-14257881 Msa0631340:exon 40.0%
! CTTCGAAATAGACGGATTTG+AGG + chr4_3:14257870-14257889 Msa0631340:exon 40.0%
GTTCAATTGTTAGGTGTAGG+AGG + chr4_3:14256816-14256835 Msa0631340:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG - chr4_3:14256845-14256864 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG - chr4_3:14256846-14256865 None:intergenic 40.0%
!!! GTGCCTGTTTTTGTCCATAA+TGG + chr4_3:14256963-14256982 Msa0631340:CDS 40.0%
! CAGCTAAGGGTTTTCCATTA+TGG - chr4_3:14256980-14256999 None:intergenic 40.0%
GCTTTCTCATAAGGTTGTTG+AGG - chr4_3:14257059-14257078 None:intergenic 40.0%
ACAACCTTATGAGAAAGCCT+TGG + chr4_3:14257061-14257080 Msa0631340:CDS 40.0%
TGTATCTACCAGAGTCATAG+TGG + chr4_3:14257168-14257187 Msa0631340:intron 40.0%
ACGATAAACCACTATGACTC+TGG - chr4_3:14257179-14257198 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG + chr4_3:14257626-14257645 Msa0631340:CDS 40.0%
CTGTGATTGAAGAAGCTGTA+GGG + chr4_3:14257702-14257721 Msa0631340:CDS 40.0%
GGGAGATTCTCTTTCACAAT+AGG - chr4_3:14257794-14257813 None:intergenic 40.0%
ATCGAGATTTGAAAAACCCG+AGG - chr4_3:14257832-14257851 None:intergenic 40.0%
!! TAGTGCTGCTTCGAAATAGA+CGG + chr4_3:14257862-14257881 Msa0631340:exon 40.0%
! CTTCGAAATAGACGGATTTG+AGG + chr4_3:14257870-14257889 Msa0631340:exon 40.0%
AGGAAGCCCATTTGTTCGAA+GGG + chr4_3:14256836-14256855 Msa0631340:CDS 45.0%
CAGGCACCTTCTTGTGAATA+GGG - chr4_3:14256950-14256969 None:intergenic 45.0%
ACAGGCACCTTCTTGTGAAT+AGG - chr4_3:14256951-14256970 None:intergenic 45.0%
ATCACAAGGGACTCAGCTAA+GGG - chr4_3:14256993-14257012 None:intergenic 45.0%
!! AGAAAGCCTTGGCTCGATTT+TGG + chr4_3:14257072-14257091 Msa0631340:CDS 45.0%
! GTCGAGGTTCATTGATGACA+AGG + chr4_3:14257094-14257113 Msa0631340:CDS 45.0%
GGTCTTAGCATACATTGGAC+CGG + chr4_3:14257318-14257337 Msa0631340:intron 45.0%
TGATGTTTCATACACAGGGC+CGG - chr4_3:14257340-14257359 None:intergenic 45.0%
GATCCTGCCAGCAATATCAA+AGG + chr4_3:14257523-14257542 Msa0631340:intron 45.0%
CATGCAGCCTTTGATATTGC+TGG - chr4_3:14257533-14257552 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG + chr4_3:14257531-14257550 Msa0631340:CDS 45.0%
! CTGCTTCCTACTTAGCTTTC+TGG + chr4_3:14257675-14257694 Msa0631340:CDS 45.0%
AGGAAGCCAGAAAGCTAAGT+AGG - chr4_3:14257684-14257703 None:intergenic 45.0%
CCTACAGCTTCTTCAATCAC+AGG - chr4_3:14257704-14257723 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG + chr4_3:14257701-14257720 Msa0631340:CDS 45.0%
AGGAAGCCCATTTGTTCGAA+GGG + chr4_3:14256836-14256855 Msa0631340:CDS 45.0%
CAGGCACCTTCTTGTGAATA+GGG - chr4_3:14256950-14256969 None:intergenic 45.0%
ACAGGCACCTTCTTGTGAAT+AGG - chr4_3:14256951-14256970 None:intergenic 45.0%
ATCACAAGGGACTCAGCTAA+GGG - chr4_3:14256993-14257012 None:intergenic 45.0%
!! AGAAAGCCTTGGCTCGATTT+TGG + chr4_3:14257072-14257091 Msa0631340:CDS 45.0%
! GTCGAGGTTCATTGATGACA+AGG + chr4_3:14257094-14257113 Msa0631340:CDS 45.0%
GGTCTTAGCATACATTGGAC+CGG + chr4_3:14257318-14257337 Msa0631340:intron 45.0%
TGATGTTTCATACACAGGGC+CGG - chr4_3:14257340-14257359 None:intergenic 45.0%
GATCCTGCCAGCAATATCAA+AGG + chr4_3:14257523-14257542 Msa0631340:intron 45.0%
CATGCAGCCTTTGATATTGC+TGG - chr4_3:14257533-14257552 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG + chr4_3:14257531-14257550 Msa0631340:CDS 45.0%
! CTGCTTCCTACTTAGCTTTC+TGG + chr4_3:14257675-14257694 Msa0631340:CDS 45.0%
AGGAAGCCAGAAAGCTAAGT+AGG - chr4_3:14257684-14257703 None:intergenic 45.0%
CCTACAGCTTCTTCAATCAC+AGG - chr4_3:14257704-14257723 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG + chr4_3:14257701-14257720 Msa0631340:CDS 45.0%
GAGGAAGCCCATTTGTTCGA+AGG + chr4_3:14256835-14256854 Msa0631340:CDS 50.0%
GATCACAAGGGACTCAGCTA+AGG - chr4_3:14256994-14257013 None:intergenic 50.0%
CGAGCCAAGGCTTTCTCATA+AGG - chr4_3:14257068-14257087 None:intergenic 50.0%
CAGCCTTTGATATTGCTGGC+AGG - chr4_3:14257529-14257548 None:intergenic 50.0%
GAGAATCTCCCCCCAAAAGA+TGG + chr4_3:14257803-14257822 Msa0631340:CDS 50.0%
! ACCCGAGGAGTCCATCTTTT+GGG - chr4_3:14257817-14257836 None:intergenic 50.0%
! AACCCGAGGAGTCCATCTTT+TGG - chr4_3:14257818-14257837 None:intergenic 50.0%
GAGGAAGCCCATTTGTTCGA+AGG + chr4_3:14256835-14256854 Msa0631340:CDS 50.0%
GATCACAAGGGACTCAGCTA+AGG - chr4_3:14256994-14257013 None:intergenic 50.0%
CGAGCCAAGGCTTTCTCATA+AGG - chr4_3:14257068-14257087 None:intergenic 50.0%
CAGCCTTTGATATTGCTGGC+AGG - chr4_3:14257529-14257548 None:intergenic 50.0%
GAGAATCTCCCCCCAAAAGA+TGG + chr4_3:14257803-14257822 Msa0631340:CDS 50.0%
! ACCCGAGGAGTCCATCTTTT+GGG - chr4_3:14257817-14257836 None:intergenic 50.0%
! AACCCGAGGAGTCCATCTTT+TGG - chr4_3:14257818-14257837 None:intergenic 50.0%
CCTCGACCAAAATCGAGCCA+AGG - chr4_3:14257081-14257100 None:intergenic 55.0%
!! CCTTGGCTCGATTTTGGTCG+AGG + chr4_3:14257078-14257097 Msa0631340:CDS 55.0%
! CGAGGAGTCCATCTTTTGGG+GGG - chr4_3:14257814-14257833 None:intergenic 55.0%
! CCGAGGAGTCCATCTTTTGG+GGG - chr4_3:14257815-14257834 None:intergenic 55.0%
! CCCCCAAAAGATGGACTCCT+CGG + chr4_3:14257812-14257831 Msa0631340:CDS 55.0%
! CCCGAGGAGTCCATCTTTTG+GGG - chr4_3:14257816-14257835 None:intergenic 55.0%
! CCCCAAAAGATGGACTCCTC+GGG + chr4_3:14257813-14257832 Msa0631340:CDS 55.0%
CCTCGACCAAAATCGAGCCA+AGG - chr4_3:14257081-14257100 None:intergenic 55.0%
!! CCTTGGCTCGATTTTGGTCG+AGG + chr4_3:14257078-14257097 Msa0631340:CDS 55.0%
! CGAGGAGTCCATCTTTTGGG+GGG - chr4_3:14257814-14257833 None:intergenic 55.0%
! CCGAGGAGTCCATCTTTTGG+GGG - chr4_3:14257815-14257834 None:intergenic 55.0%
! CCCCCAAAAGATGGACTCCT+CGG + chr4_3:14257812-14257831 Msa0631340:CDS 55.0%
! CCCGAGGAGTCCATCTTTTG+GGG - chr4_3:14257816-14257835 None:intergenic 55.0%
! CCCCAAAAGATGGACTCCTC+GGG + chr4_3:14257813-14257832 Msa0631340:CDS 55.0%
GCTGCATGCTGCAGAGTCGT+TGG + chr4_3:14257899-14257918 Msa0631340:three_prime_UTR 60.0%
GCTGCATGCTGCAGAGTCGT+TGG + chr4_3:14257899-14257918 Msa0631340:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 14256712 14258129 14256712 ID=Msa0631340;Name=Msa0631340
chr4_3 mRNA 14256712 14258129 14256712 ID=Msa0631340-mRNA-1;Parent=Msa0631340;Name=Msa0631340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=83|1|1|1|1|1|2|249|225
chr4_3 exon 14256712 14257115 14256712 ID=Msa0631340-mRNA-1:exon:3948;Parent=Msa0631340-mRNA-1
chr4_3 exon 14257524 14258129 14257524 ID=Msa0631340-mRNA-1:exon:3949;Parent=Msa0631340-mRNA-1
chr4_3 five_prime_UTR 14256712 14256794 14256712 ID=Msa0631340-mRNA-1:five_prime_utr;Parent=Msa0631340-mRNA-1
chr4_3 CDS 14256795 14257115 14256795 ID=Msa0631340-mRNA-1:cds;Parent=Msa0631340-mRNA-1
chr4_3 CDS 14257524 14257880 14257524 ID=Msa0631340-mRNA-1:cds;Parent=Msa0631340-mRNA-1
chr4_3 three_prime_UTR 14257881 14258129 14257881 ID=Msa0631340-mRNA-1:three_prime_utr;Parent=Msa0631340-mRNA-1
Gene Sequence

>Msa0631340

ATGGCCAAAGATCAAGGAGAAGTTCAATTGTTAGGTGTAGGAGGAAGCCCATTTGTTCGAAGGGTGCAAATTGCTCTAAAACTAAAGGGTATTGAATACACTTACATTGAAGAAAATCTAAGGAACAAAAGTGATCTTCTTCTTAAGTATAACCCTATTCACAAGAAGGTGCCTGTTTTTGTCCATAATGGAAAACCCTTAGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAAACATGGGAGAATTATCCTATTTTCCCTCAACAACCTTATGAGAAAGCCTTGGCTCGATTTTGGTCGAGGTTCATTGATGACAAGATCCTGCCAGCAATATCAAAGGCTGCATGGACAGTGAACAAAGAAGAACGTGAGAAAGGCATTGAAGAATCATTGCAAACCCTAGAATTTCTTGAGAATGAACTCAAGCACAAATTCTTTGGTGGAGAAAACATTAGCATTGTGGACATTGCTGCTTCCTACTTAGCTTTCTGGCTTCCTGTGATTGAAGAAGCTGTAGGGTTGAAGATTCTTAGCAGTGACAAATTTCCTAAGCTCTATAAATGGAGTCAAGAATTCAACAATCATCCTATTGTGAAAGAGAATCTCCCCCCAAAAGATGGACTCCTCGGGTTTTTCAAATCTCGATATGCAGCGATTAGTGCTGCTTCGAAATAG

Protein sequence

>Msa0631340

MAKDQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPLAESLVILEYIDETWENYPIFPQQPYEKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQTLEFLENELKHKFFGGENISIVDIAASYLAFWLPVIEEAVGLKILSSDKFPKLYKWSQEFNNHPIVKENLPPKDGLLGFFKSRYAAISAASK*