AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370510 MtrunA17_Chr3g0115591 84.663 326 16 2 1 293 1 325 0.0 555
Msa0370510 MtrunA17_Chr5g0425421 59.609 307 88 2 1 274 1 304 3.92e-124 357
Msa0370510 MtrunA17_Chr7g0254621 41.176 255 117 1 23 244 18 272 4.10e-69 217
Msa0370510 MtrunA17_Chr8g0373391 40.945 254 116 1 18 237 12 265 4.29e-64 203
Msa0370510 MtrunA17_Chr1g0155071 38.618 246 117 1 26 237 20 265 4.06e-60 193
Msa0370510 MtrunA17_Chr8g0385691 26.316 228 128 8 20 211 19 242 3.30e-12 65.1
Msa0370510 MtrunA17_Chr1g0205531 29.655 145 92 4 21 159 8 148 7.33e-12 65.5
Msa0370510 MtrunA17_Chr4g0058811 24.841 157 83 2 55 176 77 233 5.25e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370510 AT4G08690.2 46.304 257 102 2 9 232 6 259 2.64e-79 243
Msa0370510 AT4G08690.1 46.304 257 102 2 9 232 6 259 2.64e-79 243
Msa0370510 AT4G08690.3 46.304 257 102 2 9 232 6 259 2.64e-79 243
Msa0370510 AT1G22180.2 45.098 306 120 6 12 278 12 308 3.09e-77 238
Msa0370510 AT1G22180.4 45.098 306 120 6 12 278 12 308 3.09e-77 238
Msa0370510 AT1G75170.2 36.822 258 129 1 25 248 20 277 2.43e-61 196
Msa0370510 AT1G75170.1 36.822 258 129 1 25 248 20 277 2.43e-61 196
Msa0370510 AT1G22180.3 44.177 249 94 5 69 278 1 243 4.98e-59 189
Msa0370510 AT1G22180.1 44.177 249 94 5 69 278 1 243 4.98e-59 189
Msa0370510 AT4G36640.1 35.206 267 139 1 24 256 16 282 6.93e-56 182
Msa0370510 AT4G36640.3 35.206 267 139 1 24 256 16 282 6.93e-56 182
Msa0370510 AT4G36640.2 33.333 222 114 1 69 256 1 222 1.20e-39 139
Msa0370510 AT1G75170.3 31.088 193 99 1 90 248 2 194 1.89e-30 114
Msa0370510 AT5G63060.1 26.923 156 79 2 55 175 78 233 7.35e-12 64.7
Msa0370510 AT5G63060.2 27.044 159 81 2 52 175 40 198 9.23e-12 63.9

Find 78 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTCCTGTCTCCATTTA+AGG 0.158580 3_1:+68318159 None:intergenic
GGTATTTAAAATCACAAAAT+TGG 0.173573 3_1:-68318217 Msa0370510:CDS
CCATAATCTTCTTTGTGTTT+TGG 0.230567 3_1:+68317269 None:intergenic
TATGGAGGGTTTATTTGATA+TGG 0.234312 3_1:-68317251 Msa0370510:CDS
CCATCCTTGGCACAATAATT+TGG 0.234391 3_1:+68317905 None:intergenic
TTAACACAGTTTAATTAATT+AGG 0.261578 3_1:+68318785 None:intergenic
GTAGCAAGCTTGAAGGCTTT+TGG 0.270886 3_1:-68316803 Msa0370510:three_prime_UTR
ATAACAAGATGCACTCCTTT+TGG 0.282527 3_1:-68317147 Msa0370510:CDS
CTTTATCTTATTATAATTCT+CGG 0.306203 3_1:+68317309 None:intergenic
CTTACCCAGGTAATCTCTTC+AGG 0.306944 3_1:+68318134 None:intergenic
CCAAAACACAAAGAAGATTA+TGG 0.309315 3_1:-68317269 Msa0370510:CDS
GTTTGGTTCTCTCAAAAGTT+TGG 0.315765 3_1:-68318668 Msa0370510:five_prime_UTR
GAGATATATTGATCAGGTTT+AGG 0.320441 3_1:+68317010 None:intergenic
TATATCTCTTAAATTCAGTT+TGG 0.368340 3_1:-68318685 Msa0370510:five_prime_UTR
TTACCTTGTAGCAAGCTTGA+AGG 0.401442 3_1:-68316810 Msa0370510:three_prime_UTR
TTTGTTCTCATTATAAGTAC+TGG 0.408192 3_1:+68317878 None:intergenic
GTTCTGATGCATCCATTTCA+AGG 0.412879 3_1:-68318238 Msa0370510:CDS
ACCTTTAGCAACACTGATGC+AGG 0.444132 3_1:+68318641 None:intergenic
GATCAACTTGAACCTGCATT+TGG 0.447521 3_1:-68317229 Msa0370510:CDS
TAATTAATTAAACTGTGTTA+AGG 0.451523 3_1:-68318783 Msa0370510:five_prime_UTR
AGATCACCTGCTCCTGGTGA+GGG 0.468118 3_1:+68317664 None:intergenic
CAGATCACCTGCTCCTGGTG+AGG 0.469356 3_1:+68317663 None:intergenic
AAGTACTGGTCTTCCATCCT+TGG 0.473632 3_1:+68317892 None:intergenic
ACAGAGGTCATGGCATAGAA+TGG 0.477385 3_1:-68316971 Msa0370510:exon
GTTGCTAATGAAGCAGAGAC+AGG 0.477872 3_1:-68317941 Msa0370510:CDS
TATTTCGTTACCGAGAAGAA+TGG 0.481590 3_1:+68317504 None:intergenic
ATTGAGGTGAGAAAGTTGAT+AGG 0.483915 3_1:-68318290 Msa0370510:CDS
CAAAGTGGTTATAAAATGAA+TGG 0.485251 3_1:-68318737 Msa0370510:five_prime_UTR
ATATCATATCTCTTAAGTCT+AGG 0.493692 3_1:+68316870 None:intergenic
AACAACATAAATCCAACATA+AGG 0.498756 3_1:+68316844 None:intergenic
GTAACTGAGATATATTGATC+AGG 0.500083 3_1:+68317004 None:intergenic
ATGAGCTATGATATTCTAGT+TGG 0.501726 3_1:-68316896 Msa0370510:three_prime_UTR
CCAAATTATTGTGCCAAGGA+TGG 0.506258 3_1:-68317905 Msa0370510:CDS
TCATTATTCCCACCAAATGC+AGG 0.506468 3_1:+68317217 None:intergenic
CAACTTGAACCTGCATTTGG+TGG 0.510649 3_1:-68317226 Msa0370510:CDS
GTCACTATCACAAGAACAGC+AGG 0.515426 3_1:-68318424 Msa0370510:CDS
AGAGTTTGCATGTGTCCAAA+AGG 0.518082 3_1:+68317132 None:intergenic
CAGAGGTCATGGCATAGAAT+GGG 0.525288 3_1:-68316970 Msa0370510:exon
CTGAAGAAAACTGCCTCTGA+TGG 0.531528 3_1:-68318468 Msa0370510:CDS
TTCCTCCTTCAGATTTGACC+AGG 0.531700 3_1:-68317087 Msa0370510:CDS
CCAGCCAGATCACCTGCTCC+TGG 0.532714 3_1:+68317658 None:intergenic
ATAAACCTGAAGAGATTACC+TGG 0.535260 3_1:-68318139 Msa0370510:CDS
GAAGAATGGTTGGAAAATCC+CGG 0.535429 3_1:+68317518 None:intergenic
TTATCCACAGCGCCTCGGAT+TGG 0.536069 3_1:-68317559 Msa0370510:intron
GATAGGAACATTATCAGATA+AGG 0.538137 3_1:-68318273 Msa0370510:CDS
ATATGATATAAACCTTATGT+TGG 0.538419 3_1:-68316856 Msa0370510:three_prime_UTR
GCCTGCATCAGTGTTGCTAA+AGG 0.544160 3_1:-68318642 Msa0370510:intron
ATCACCTGCTCCTGGTGAGG+GGG 0.548989 3_1:+68317666 None:intergenic
ATATGCTAAGAGAATGAGAG+AGG 0.549993 3_1:-68317173 Msa0370510:CDS
AACTTGAACCTGCATTTGGT+GGG 0.550189 3_1:-68317225 Msa0370510:CDS
TATAATGAGAACAAATCGCC+AGG 0.555150 3_1:-68317870 Msa0370510:intron
TCGCGGGGACACAGAGGTCA+TGG 0.559457 3_1:-68316981 Msa0370510:CDS
AATATATCTCAGTTACTCGC+GGG 0.560385 3_1:-68316997 Msa0370510:CDS
ATCAGAATCTGCTACTAACC+TGG 0.564891 3_1:+68317069 None:intergenic
AAGCCTTCAAGCTTGCTACA+AGG 0.571287 3_1:+68316807 None:intergenic
GATCACCTGCTCCTGGTGAG+GGG 0.576919 3_1:+68317665 None:intergenic
GCAATCATGTATGATGCACC+CGG 0.576986 3_1:-68317537 Msa0370510:CDS
AAATATTATCCACAGCGCCT+CGG 0.585906 3_1:-68317564 Msa0370510:intron
TGGTGCATTCCAGATCATTG+AGG 0.589779 3_1:-68318306 Msa0370510:intron
TCGTTACCGAGAAGAATGGT+TGG 0.590066 3_1:+68317508 None:intergenic
AACACAAAGAAGATTATGGA+GGG 0.591841 3_1:-68317265 Msa0370510:CDS
ATCACAAGAACAGCAGGCTA+AGG 0.594560 3_1:-68318418 Msa0370510:intron
ACATTGTGTGAGACTGATGA+TGG 0.595579 3_1:+68317109 None:intergenic
AAGAATGGTTGGAAAATCCC+GGG 0.597907 3_1:+68317519 None:intergenic
ACTAACCTGGTCAAATCTGA+AGG 0.603314 3_1:+68317082 None:intergenic
TGAATTGTTGCAGATGGTGA+AGG 0.607257 3_1:-68317344 Msa0370510:intron
TAGACCAAATTATTGTGCCA+AGG 0.612792 3_1:-68317909 Msa0370510:CDS
AAACACAAAGAAGATTATGG+AGG 0.618726 3_1:-68317266 Msa0370510:CDS
CAATATATCTCAGTTACTCG+CGG 0.625172 3_1:-68316998 Msa0370510:CDS
TGTTCTTGTGATAGTGACAC+TGG 0.627385 3_1:+68318429 None:intergenic
GTAATAAGTAATAACCAAAG+TGG 0.630082 3_1:-68318752 Msa0370510:five_prime_UTR
CATACATGATTGCCAATCCG+AGG 0.632178 3_1:+68317547 None:intergenic
AACCTGGTCAAATCTGAAGG+AGG 0.655670 3_1:+68317085 None:intergenic
TTGCTAATGAAGCAGAGACA+GGG 0.659274 3_1:-68317940 Msa0370510:CDS
CAATCATGTATGATGCACCC+GGG 0.666450 3_1:-68317536 Msa0370510:CDS
TAAACCTGAAGAGATTACCT+GGG 0.681766 3_1:-68318138 Msa0370510:intron
ATATATCTCAGTTACTCGCG+GGG 0.688008 3_1:-68316996 Msa0370510:CDS
AGTTACTCGCGGGGACACAG+AGG 0.703466 3_1:-68316987 Msa0370510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAATATTTTTGTAATATA+TGG + chr3_1:68317989-68318008 None:intergenic 10.0%
!!! ATTTAAATATCAACATTTTA+CGG + chr3_1:68318137-68318156 None:intergenic 10.0%
!!! GATAATATTTTTGTAATATA+TGG + chr3_1:68317989-68318008 None:intergenic 10.0%
!!! ATTTAAATATCAACATTTTA+CGG + chr3_1:68318137-68318156 None:intergenic 10.0%
!! TTAACACAGTTTAATTAATT+AGG + chr3_1:68316781-68316800 None:intergenic 15.0%
!! TAATTAATTAAACTGTGTTA+AGG - chr3_1:68316780-68316799 Msa0370510:three_prime_UTR 15.0%
!!! TTAAGAGATATATTTTAGTT+TGG + chr3_1:68316870-68316889 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG + chr3_1:68318257-68318276 None:intergenic 15.0%
!! TTAACACAGTTTAATTAATT+AGG + chr3_1:68316781-68316800 None:intergenic 15.0%
!! TAATTAATTAAACTGTGTTA+AGG - chr3_1:68316780-68316799 Msa0370510:three_prime_UTR 15.0%
!!! TTAAGAGATATATTTTAGTT+TGG + chr3_1:68316870-68316889 None:intergenic 15.0%
!! CTTTATCTTATTATAATTCT+CGG + chr3_1:68318257-68318276 None:intergenic 15.0%
!! TATATCTCTTAAATTCAGTT+TGG - chr3_1:68316878-68316897 Msa0370510:three_prime_UTR 20.0%
!! TAGCTGATAATAGTTTAATT+TGG - chr3_1:68317237-68317256 Msa0370510:CDS 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG + chr3_1:68317340-68317359 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG - chr3_1:68317346-68317365 Msa0370510:intron 20.0%
!!! TTAACAAGTATGTTTTTTCT+TGG - chr3_1:68317588-68317607 Msa0370510:intron 20.0%
!! ATATGATATAAACCTTATGT+TGG - chr3_1:68318707-68318726 Msa0370510:five_prime_UTR 20.0%
!! TATATCTCTTAAATTCAGTT+TGG - chr3_1:68316878-68316897 Msa0370510:three_prime_UTR 20.0%
!! TAGCTGATAATAGTTTAATT+TGG - chr3_1:68317237-68317256 Msa0370510:CDS 20.0%
!!! TGATTTTAAATACCTTGAAA+TGG + chr3_1:68317340-68317359 None:intergenic 20.0%
!!! GGTATTTAAAATCACAAAAT+TGG - chr3_1:68317346-68317365 Msa0370510:intron 20.0%
!!! TTAACAAGTATGTTTTTTCT+TGG - chr3_1:68317588-68317607 Msa0370510:intron 20.0%
!! ATATGATATAAACCTTATGT+TGG - chr3_1:68318707-68318726 Msa0370510:five_prime_UTR 20.0%
! GTAATAAGTAATAACCAAAG+TGG - chr3_1:68316811-68316830 Msa0370510:three_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG + chr3_1:68316828-68316847 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG - chr3_1:68316826-68316845 Msa0370510:three_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG + chr3_1:68316951-68316970 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG - chr3_1:68317169-68317188 Msa0370510:CDS 25.0%
!!! AACAACAATATTTTGAGTGA+AGG - chr3_1:68317208-68317227 Msa0370510:CDS 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG - chr3_1:68317391-68317410 Msa0370510:intron 25.0%
! AACAAAGCCTAAAATTGTTA+TGG - chr3_1:68317494-68317513 Msa0370510:intron 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG - chr3_1:68317594-68317613 Msa0370510:intron 25.0%
! TTTGTTCTCATTATAAGTAC+TGG + chr3_1:68317688-68317707 None:intergenic 25.0%
!!! TTTTTTTTTACAGCAGAAGT+TGG - chr3_1:68318109-68318128 Msa0370510:intron 25.0%
! AGAACATTGATCAAACTTAT+CGG + chr3_1:68318174-68318193 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG + chr3_1:68318696-68318715 None:intergenic 25.0%
! AACAACATAAATCCAACATA+AGG + chr3_1:68318722-68318741 None:intergenic 25.0%
! GTAATAAGTAATAACCAAAG+TGG - chr3_1:68316811-68316830 Msa0370510:three_prime_UTR 25.0%
!! CATTCATTTTATAACCACTT+TGG + chr3_1:68316828-68316847 None:intergenic 25.0%
! CAAAGTGGTTATAAAATGAA+TGG - chr3_1:68316826-68316845 Msa0370510:three_prime_UTR 25.0%
! TACAAACCATAATCATATCT+AGG + chr3_1:68316951-68316970 None:intergenic 25.0%
! ATGTCCAATAATTGAAATCT+TGG - chr3_1:68317169-68317188 Msa0370510:CDS 25.0%
!!! AACAACAATATTTTGAGTGA+AGG - chr3_1:68317208-68317227 Msa0370510:CDS 25.0%
! TGTTGAAAAAAAGCCTTAAA+TGG - chr3_1:68317391-68317410 Msa0370510:intron 25.0%
! AACAAAGCCTAAAATTGTTA+TGG - chr3_1:68317494-68317513 Msa0370510:intron 25.0%
!!! AGTATGTTTTTTCTTGGTTA+AGG - chr3_1:68317594-68317613 Msa0370510:intron 25.0%
! TTTGTTCTCATTATAAGTAC+TGG + chr3_1:68317688-68317707 None:intergenic 25.0%
!!! TTTTTTTTTACAGCAGAAGT+TGG - chr3_1:68318109-68318128 Msa0370510:intron 25.0%
! AGAACATTGATCAAACTTAT+CGG + chr3_1:68318174-68318193 None:intergenic 25.0%
! ATATCATATCTCTTAAGTCT+AGG + chr3_1:68318696-68318715 None:intergenic 25.0%
! AACAACATAAATCCAACATA+AGG + chr3_1:68318722-68318741 None:intergenic 25.0%
GGTAAACCTAGATATGATTA+TGG - chr3_1:68316942-68316961 Msa0370510:three_prime_UTR 30.0%
TGCTCCAAGATTTCAATTAT+TGG + chr3_1:68317176-68317195 None:intergenic 30.0%
!! AATATTTTGAGTGAAGGATG+AGG - chr3_1:68317214-68317233 Msa0370510:CDS 30.0%
GATAGGAACATTATCAGATA+AGG - chr3_1:68317290-68317309 Msa0370510:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG + chr3_1:68317407-68317426 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG + chr3_1:68317504-68317523 None:intergenic 30.0%
TCAGATTGAATTGAAAGATG+AGG - chr3_1:68317534-68317553 Msa0370510:CDS 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG - chr3_1:68317854-68317873 Msa0370510:intron 30.0%
AAAGAATGAATTGTTGCAGA+TGG - chr3_1:68318213-68318232 Msa0370510:CDS 30.0%
! CCATAATCTTCTTTGTGTTT+TGG + chr3_1:68318297-68318316 None:intergenic 30.0%
CCAAAACACAAAGAAGATTA+TGG - chr3_1:68318294-68318313 Msa0370510:CDS 30.0%
AAACACAAAGAAGATTATGG+AGG - chr3_1:68318297-68318316 Msa0370510:intron 30.0%
AACACAAAGAAGATTATGGA+GGG - chr3_1:68318298-68318317 Msa0370510:intron 30.0%
TATGGAGGGTTTATTTGATA+TGG - chr3_1:68318312-68318331 Msa0370510:intron 30.0%
GAGATATATTGATCAGGTTT+AGG + chr3_1:68318556-68318575 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG + chr3_1:68318562-68318581 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG - chr3_1:68318667-68318686 Msa0370510:five_prime_UTR 30.0%
GGTAAACCTAGATATGATTA+TGG - chr3_1:68316942-68316961 Msa0370510:three_prime_UTR 30.0%
TGCTCCAAGATTTCAATTAT+TGG + chr3_1:68317176-68317195 None:intergenic 30.0%
!! AATATTTTGAGTGAAGGATG+AGG - chr3_1:68317214-68317233 Msa0370510:CDS 30.0%
GATAGGAACATTATCAGATA+AGG - chr3_1:68317290-68317309 Msa0370510:CDS 30.0%
TATATTCCTGTCTCCATTTA+AGG + chr3_1:68317407-68317426 None:intergenic 30.0%
! AACACAGCCATAACAATTTT+AGG + chr3_1:68317504-68317523 None:intergenic 30.0%
TCAGATTGAATTGAAAGATG+AGG - chr3_1:68317534-68317553 Msa0370510:CDS 30.0%
!! TAAGCATTTTGTTTACTGCA+TGG - chr3_1:68317854-68317873 Msa0370510:intron 30.0%
AAAGAATGAATTGTTGCAGA+TGG - chr3_1:68318213-68318232 Msa0370510:CDS 30.0%
! CCATAATCTTCTTTGTGTTT+TGG + chr3_1:68318297-68318316 None:intergenic 30.0%
CCAAAACACAAAGAAGATTA+TGG - chr3_1:68318294-68318313 Msa0370510:CDS 30.0%
AAACACAAAGAAGATTATGG+AGG - chr3_1:68318297-68318316 Msa0370510:intron 30.0%
AACACAAAGAAGATTATGGA+GGG - chr3_1:68318298-68318317 Msa0370510:intron 30.0%
TATGGAGGGTTTATTTGATA+TGG - chr3_1:68318312-68318331 Msa0370510:intron 30.0%
GAGATATATTGATCAGGTTT+AGG + chr3_1:68318556-68318575 None:intergenic 30.0%
GTAACTGAGATATATTGATC+AGG + chr3_1:68318562-68318581 None:intergenic 30.0%
ATGAGCTATGATATTCTAGT+TGG - chr3_1:68318667-68318686 Msa0370510:five_prime_UTR 30.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG - chr3_1:68316895-68316914 Msa0370510:three_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG + chr3_1:68317121-68317140 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG - chr3_1:68317273-68317292 Msa0370510:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG - chr3_1:68317398-68317417 Msa0370510:intron 35.0%
ATAAACCTGAAGAGATTACC+TGG - chr3_1:68317424-68317443 Msa0370510:intron 35.0%
TAAACCTGAAGAGATTACCT+GGG - chr3_1:68317425-68317444 Msa0370510:intron 35.0%
TAGACCAAATTATTGTGCCA+AGG - chr3_1:68317654-68317673 Msa0370510:intron 35.0%
TATAATGAGAACAAATCGCC+AGG - chr3_1:68317693-68317712 Msa0370510:CDS 35.0%
! AGTGATTTTCAGAAGAAACC+TGG + chr3_1:68317714-68317733 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG - chr3_1:68317755-68317774 Msa0370510:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG - chr3_1:68318049-68318068 Msa0370510:intron 35.0%
TATTTCGTTACCGAGAAGAA+TGG + chr3_1:68318062-68318081 None:intergenic 35.0%
ATATGCTAAGAGAATGAGAG+AGG - chr3_1:68318390-68318409 Msa0370510:intron 35.0%
! ATAACAAGATGCACTCCTTT+TGG - chr3_1:68318416-68318435 Msa0370510:intron 35.0%
! ATCAACTATTTTCTCGTCGT+TGG + chr3_1:68318524-68318543 None:intergenic 35.0%
CAATATATCTCAGTTACTCG+CGG - chr3_1:68318565-68318584 Msa0370510:intron 35.0%
AATATATCTCAGTTACTCGC+GGG - chr3_1:68318566-68318585 Msa0370510:intron 35.0%
!! GTTTGGTTCTCTCAAAAGTT+TGG - chr3_1:68316895-68316914 Msa0370510:three_prime_UTR 35.0%
! ACACTGGTAACATTTTCTCA+TGG + chr3_1:68317121-68317140 None:intergenic 35.0%
! ATTGAGGTGAGAAAGTTGAT+AGG - chr3_1:68317273-68317292 Msa0370510:CDS 35.0%
AAAAAGCCTTAAATGGAGAC+AGG - chr3_1:68317398-68317417 Msa0370510:intron 35.0%
ATAAACCTGAAGAGATTACC+TGG - chr3_1:68317424-68317443 Msa0370510:intron 35.0%
TAAACCTGAAGAGATTACCT+GGG - chr3_1:68317425-68317444 Msa0370510:intron 35.0%
TAGACCAAATTATTGTGCCA+AGG - chr3_1:68317654-68317673 Msa0370510:intron 35.0%
TATAATGAGAACAAATCGCC+AGG - chr3_1:68317693-68317712 Msa0370510:CDS 35.0%
! AGTGATTTTCAGAAGAAACC+TGG + chr3_1:68317714-68317733 None:intergenic 35.0%
ACTTCAGCATGAGTGAAAAA+TGG - chr3_1:68317755-68317774 Msa0370510:intron 35.0%
! GATTTTCCAACCATTCTTCT+CGG - chr3_1:68318049-68318068 Msa0370510:intron 35.0%
TATTTCGTTACCGAGAAGAA+TGG + chr3_1:68318062-68318081 None:intergenic 35.0%
ATATGCTAAGAGAATGAGAG+AGG - chr3_1:68318390-68318409 Msa0370510:intron 35.0%
! ATAACAAGATGCACTCCTTT+TGG - chr3_1:68318416-68318435 Msa0370510:intron 35.0%
! ATCAACTATTTTCTCGTCGT+TGG + chr3_1:68318524-68318543 None:intergenic 35.0%
CAATATATCTCAGTTACTCG+CGG - chr3_1:68318565-68318584 Msa0370510:intron 35.0%
AATATATCTCAGTTACTCGC+GGG - chr3_1:68318566-68318585 Msa0370510:intron 35.0%
! TGTTCTTGTGATAGTGACAC+TGG + chr3_1:68317137-68317156 None:intergenic 40.0%
ACTTTCTCACCTCAATGATC+TGG + chr3_1:68317269-68317288 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG - chr3_1:68317325-68317344 Msa0370510:CDS 40.0%
TTGCTAATGAAGCAGAGACA+GGG - chr3_1:68317623-68317642 Msa0370510:intron 40.0%
CCATCCTTGGCACAATAATT+TGG + chr3_1:68317661-68317680 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG - chr3_1:68317658-68317677 Msa0370510:intron 40.0%
CACTTGACAAACTGAAACCA+TGG + chr3_1:68317938-68317957 None:intergenic 40.0%
AAATATTATCCACAGCGCCT+CGG - chr3_1:68317999-68318018 Msa0370510:intron 40.0%
AAGAATGGTTGGAAAATCCC+GGG + chr3_1:68318047-68318066 None:intergenic 40.0%
GAAGAATGGTTGGAAAATCC+CGG + chr3_1:68318048-68318067 None:intergenic 40.0%
TGAATTGTTGCAGATGGTGA+AGG - chr3_1:68318219-68318238 Msa0370510:CDS 40.0%
GATCAACTTGAACCTGCATT+TGG - chr3_1:68318334-68318353 Msa0370510:intron 40.0%
AACTTGAACCTGCATTTGGT+GGG - chr3_1:68318338-68318357 Msa0370510:intron 40.0%
TCATTATTCCCACCAAATGC+AGG + chr3_1:68318349-68318368 None:intergenic 40.0%
AGAGTTTGCATGTGTCCAAA+AGG + chr3_1:68318434-68318453 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG + chr3_1:68318457-68318476 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG + chr3_1:68318484-68318503 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG + chr3_1:68318497-68318516 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG - chr3_1:68318567-68318586 Msa0370510:intron 40.0%
TTACCTTGTAGCAAGCTTGA+AGG - chr3_1:68318753-68318772 Msa0370510:five_prime_UTR 40.0%
! TGTTCTTGTGATAGTGACAC+TGG + chr3_1:68317137-68317156 None:intergenic 40.0%
ACTTTCTCACCTCAATGATC+TGG + chr3_1:68317269-68317288 None:intergenic 40.0%
GTTCTGATGCATCCATTTCA+AGG - chr3_1:68317325-68317344 Msa0370510:CDS 40.0%
TTGCTAATGAAGCAGAGACA+GGG - chr3_1:68317623-68317642 Msa0370510:intron 40.0%
CCATCCTTGGCACAATAATT+TGG + chr3_1:68317661-68317680 None:intergenic 40.0%
CCAAATTATTGTGCCAAGGA+TGG - chr3_1:68317658-68317677 Msa0370510:intron 40.0%
CACTTGACAAACTGAAACCA+TGG + chr3_1:68317938-68317957 None:intergenic 40.0%
AAATATTATCCACAGCGCCT+CGG - chr3_1:68317999-68318018 Msa0370510:intron 40.0%
AAGAATGGTTGGAAAATCCC+GGG + chr3_1:68318047-68318066 None:intergenic 40.0%
GAAGAATGGTTGGAAAATCC+CGG + chr3_1:68318048-68318067 None:intergenic 40.0%
TGAATTGTTGCAGATGGTGA+AGG - chr3_1:68318219-68318238 Msa0370510:CDS 40.0%
GATCAACTTGAACCTGCATT+TGG - chr3_1:68318334-68318353 Msa0370510:intron 40.0%
AACTTGAACCTGCATTTGGT+GGG - chr3_1:68318338-68318357 Msa0370510:intron 40.0%
TCATTATTCCCACCAAATGC+AGG + chr3_1:68318349-68318368 None:intergenic 40.0%
AGAGTTTGCATGTGTCCAAA+AGG + chr3_1:68318434-68318453 None:intergenic 40.0%
ACATTGTGTGAGACTGATGA+TGG + chr3_1:68318457-68318476 None:intergenic 40.0%
ACTAACCTGGTCAAATCTGA+AGG + chr3_1:68318484-68318503 None:intergenic 40.0%
ATCAGAATCTGCTACTAACC+TGG + chr3_1:68318497-68318516 None:intergenic 40.0%
ATATATCTCAGTTACTCGCG+GGG - chr3_1:68318567-68318586 Msa0370510:intron 40.0%
TTACCTTGTAGCAAGCTTGA+AGG - chr3_1:68318753-68318772 Msa0370510:five_prime_UTR 40.0%
ACCTTTAGCAACACTGATGC+AGG + chr3_1:68316925-68316944 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG - chr3_1:68317095-68317114 Msa0370510:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG + chr3_1:68317111-68317130 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG - chr3_1:68317139-68317158 Msa0370510:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG - chr3_1:68317145-68317164 Msa0370510:CDS 45.0%
TGGTGCATTCCAGATCATTG+AGG - chr3_1:68317257-68317276 Msa0370510:CDS 45.0%
CTTACCCAGGTAATCTCTTC+AGG + chr3_1:68317432-68317451 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG + chr3_1:68317445-68317464 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG - chr3_1:68317622-68317641 Msa0370510:intron 45.0%
!! AAGTACTGGTCTTCCATCCT+TGG + chr3_1:68317674-68317693 None:intergenic 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG - chr3_1:68317918-68317937 Msa0370510:CDS 45.0%
CATACATGATTGCCAATCCG+AGG + chr3_1:68318019-68318038 None:intergenic 45.0%
GCAATCATGTATGATGCACC+CGG - chr3_1:68318026-68318045 Msa0370510:intron 45.0%
CAATCATGTATGATGCACCC+GGG - chr3_1:68318027-68318046 Msa0370510:intron 45.0%
TCGTTACCGAGAAGAATGGT+TGG + chr3_1:68318058-68318077 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG - chr3_1:68318337-68318356 Msa0370510:intron 45.0%
TTCCTCCTTCAGATTTGACC+AGG - chr3_1:68318476-68318495 Msa0370510:CDS 45.0%
AACCTGGTCAAATCTGAAGG+AGG + chr3_1:68318481-68318500 None:intergenic 45.0%
ACAGAGGTCATGGCATAGAA+TGG - chr3_1:68318592-68318611 Msa0370510:intron 45.0%
CAGAGGTCATGGCATAGAAT+GGG - chr3_1:68318593-68318612 Msa0370510:intron 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG + chr3_1:68318759-68318778 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG - chr3_1:68318760-68318779 Msa0370510:five_prime_UTR 45.0%
ACCTTTAGCAACACTGATGC+AGG + chr3_1:68316925-68316944 None:intergenic 45.0%
CTGAAGAAAACTGCCTCTGA+TGG - chr3_1:68317095-68317114 Msa0370510:CDS 45.0%
! CATTTTCTCATGGCCATCAG+AGG + chr3_1:68317111-68317130 None:intergenic 45.0%
GTCACTATCACAAGAACAGC+AGG - chr3_1:68317139-68317158 Msa0370510:CDS 45.0%
ATCACAAGAACAGCAGGCTA+AGG - chr3_1:68317145-68317164 Msa0370510:CDS 45.0%
TGGTGCATTCCAGATCATTG+AGG - chr3_1:68317257-68317276 Msa0370510:CDS 45.0%
CTTACCCAGGTAATCTCTTC+AGG + chr3_1:68317432-68317451 None:intergenic 45.0%
AAGCAAGCAGTAACTTACCC+AGG + chr3_1:68317445-68317464 None:intergenic 45.0%
GTTGCTAATGAAGCAGAGAC+AGG - chr3_1:68317622-68317641 Msa0370510:intron 45.0%
!! AAGTACTGGTCTTCCATCCT+TGG + chr3_1:68317674-68317693 None:intergenic 45.0%
! ATCTGGCTGGTTGATTTCCA+TGG - chr3_1:68317918-68317937 Msa0370510:CDS 45.0%
CATACATGATTGCCAATCCG+AGG + chr3_1:68318019-68318038 None:intergenic 45.0%
GCAATCATGTATGATGCACC+CGG - chr3_1:68318026-68318045 Msa0370510:intron 45.0%
CAATCATGTATGATGCACCC+GGG - chr3_1:68318027-68318046 Msa0370510:intron 45.0%
TCGTTACCGAGAAGAATGGT+TGG + chr3_1:68318058-68318077 None:intergenic 45.0%
CAACTTGAACCTGCATTTGG+TGG - chr3_1:68318337-68318356 Msa0370510:intron 45.0%
TTCCTCCTTCAGATTTGACC+AGG - chr3_1:68318476-68318495 Msa0370510:CDS 45.0%
AACCTGGTCAAATCTGAAGG+AGG + chr3_1:68318481-68318500 None:intergenic 45.0%
ACAGAGGTCATGGCATAGAA+TGG - chr3_1:68318592-68318611 Msa0370510:intron 45.0%
CAGAGGTCATGGCATAGAAT+GGG - chr3_1:68318593-68318612 Msa0370510:intron 45.0%
!! AAGCCTTCAAGCTTGCTACA+AGG + chr3_1:68318759-68318778 None:intergenic 45.0%
! GTAGCAAGCTTGAAGGCTTT+TGG - chr3_1:68318760-68318779 Msa0370510:five_prime_UTR 45.0%
!!! AATTATTTTAAATAAAAATG+AGG - chr3_1:68316991-68317010 Msa0370510:CDS 5.0%
!!! TATGTTTTTATTTATTTTAA+AGG + chr3_1:68318786-68318805 None:intergenic 5.0%
!!! AATTATTTTAAATAAAAATG+AGG - chr3_1:68316991-68317010 Msa0370510:CDS 5.0%
!!! TATGTTTTTATTTATTTTAA+AGG + chr3_1:68318786-68318805 None:intergenic 5.0%
! GCCTGCATCAGTGTTGCTAA+AGG - chr3_1:68316921-68316940 Msa0370510:three_prime_UTR 50.0%
TCTAAATCTTCCCCCTCACC+AGG - chr3_1:68317887-68317906 Msa0370510:CDS 50.0%
! GCCTGCATCAGTGTTGCTAA+AGG - chr3_1:68316921-68316940 Msa0370510:three_prime_UTR 50.0%
TCTAAATCTTCCCCCTCACC+AGG - chr3_1:68317887-68317906 Msa0370510:CDS 50.0%
AGATCACCTGCTCCTGGTGA+GGG + chr3_1:68317902-68317921 None:intergenic 55.0%
TTATCCACAGCGCCTCGGAT+TGG - chr3_1:68318004-68318023 Msa0370510:intron 55.0%
AGATCACCTGCTCCTGGTGA+GGG + chr3_1:68317902-68317921 None:intergenic 55.0%
TTATCCACAGCGCCTCGGAT+TGG - chr3_1:68318004-68318023 Msa0370510:intron 55.0%
ATCACCTGCTCCTGGTGAGG+GGG + chr3_1:68317900-68317919 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG + chr3_1:68317901-68317920 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG + chr3_1:68317903-68317922 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG - chr3_1:68317901-68317920 Msa0370510:CDS 60.0%
!! ATTGCCAATCCGAGGCGCTG+TGG + chr3_1:68318011-68318030 None:intergenic 60.0%
AGTTACTCGCGGGGACACAG+AGG - chr3_1:68318576-68318595 Msa0370510:intron 60.0%
ATCACCTGCTCCTGGTGAGG+GGG + chr3_1:68317900-68317919 None:intergenic 60.0%
GATCACCTGCTCCTGGTGAG+GGG + chr3_1:68317901-68317920 None:intergenic 60.0%
CAGATCACCTGCTCCTGGTG+AGG + chr3_1:68317903-68317922 None:intergenic 60.0%
CTCACCAGGAGCAGGTGATC+TGG - chr3_1:68317901-68317920 Msa0370510:CDS 60.0%
!! ATTGCCAATCCGAGGCGCTG+TGG + chr3_1:68318011-68318030 None:intergenic 60.0%
AGTTACTCGCGGGGACACAG+AGG - chr3_1:68318576-68318595 Msa0370510:intron 60.0%
TCTTCCCCCTCACCAGGAGC+AGG - chr3_1:68317893-68317912 Msa0370510:CDS 65.0%
CCAGCCAGATCACCTGCTCC+TGG + chr3_1:68317908-68317927 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG - chr3_1:68317905-68317924 Msa0370510:CDS 65.0%
TCGCGGGGACACAGAGGTCA+TGG - chr3_1:68318582-68318601 Msa0370510:intron 65.0%
TCTTCCCCCTCACCAGGAGC+AGG - chr3_1:68317893-68317912 Msa0370510:CDS 65.0%
CCAGCCAGATCACCTGCTCC+TGG + chr3_1:68317908-68317927 None:intergenic 65.0%
CCAGGAGCAGGTGATCTGGC+TGG - chr3_1:68317905-68317924 Msa0370510:CDS 65.0%
TCGCGGGGACACAGAGGTCA+TGG - chr3_1:68318582-68318601 Msa0370510:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68316757 68318828 68316757 ID=Msa0370510;Name=Msa0370510
chr3_1 mRNA 68316757 68318828 68316757 ID=Msa0370510-mRNA-1;Parent=Msa0370510;Name=Msa0370510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=206|0.83|0.71|1|0.83|0.85|7|219|293
chr3_1 exon 68316757 68317353 68316757 ID=Msa0370510-mRNA-1:exon:14346;Parent=Msa0370510-mRNA-1
chr3_1 exon 68317515 68317571 68317515 ID=Msa0370510-mRNA-1:exon:14345;Parent=Msa0370510-mRNA-1
chr3_1 exon 68317671 68317757 68317671 ID=Msa0370510-mRNA-1:exon:14344;Parent=Msa0370510-mRNA-1
chr3_1 exon 68317871 68317969 68317871 ID=Msa0370510-mRNA-1:exon:14343;Parent=Msa0370510-mRNA-1
chr3_1 exon 68318139 68318315 68318139 ID=Msa0370510-mRNA-1:exon:14342;Parent=Msa0370510-mRNA-1
chr3_1 exon 68318419 68318522 68318419 ID=Msa0370510-mRNA-1:exon:14341;Parent=Msa0370510-mRNA-1
chr3_1 exon 68318643 68318828 68318643 ID=Msa0370510-mRNA-1:exon:14340;Parent=Msa0370510-mRNA-1
chr3_1 five_prime_UTR 68318643 68318828 68318643 ID=Msa0370510-mRNA-1:five_prime_utr;Parent=Msa0370510-mRNA-1
chr3_1 five_prime_UTR 68318503 68318522 68318503 ID=Msa0370510-mRNA-1:five_prime_utr;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68318419 68318502 68318419 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68318139 68318315 68318139 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68317871 68317969 68317871 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68317671 68317757 68317671 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68317515 68317571 68317515 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 CDS 68316976 68317353 68316976 ID=Msa0370510-mRNA-1:cds;Parent=Msa0370510-mRNA-1
chr3_1 three_prime_UTR 68316757 68316975 68316757 ID=Msa0370510-mRNA-1:three_prime_utr;Parent=Msa0370510-mRNA-1
Gene Sequence

>Msa0370510

ATGAGTGAGAATCTGAAGAAAACTGCCTCTGATGGCCATGAGAAAATGTTACCAGTGTCACTATCACAAGAACAGCAGGCTAAGATCATTGAGGTGAGAAAGTTGATAGGAACATTATCAGATAAGGAATCTGTGTACTGTTCTGATGCATCCATTTCAAGGTATTTAAAATCACAAAATTGGAATGTTAAGAAAGCTTCTCAAATGTTGAAAAAAAGCCTTAAATGGAGACAGGAATATAAACCTGAAGAGATTACCTGGGATGATGTTGCTAATGAAGCAGAGACAGGGAAAATGTATAGACCAAATTATTGTGCCAAGGATGGAAGACCAGTACTTATAATGAGAACAAATCGCCAGAAGTCGAAGACATTAGTAGAAGAGATTAAGCATTTTGTTTACTGCATGGAGAATGCAATTCTAAATCTTCCCCCTCACCAGGAGCAGCGCCTCGGATTGGCAATCATGTATGATGCACCCGGGATTTTCCAACCATTCTTCTCGATGGTGAAGGTTCTGCTTGAGACCGAGAATTATAATAAGATAAAGTTTGTTTATTCTAACGACCAAAACACAAAGAAGATTATGGAGGGTTTATTTGATATGGATCAACTTGAACCTGCATTTGGTGGGAATAATGACACAGAATTTGATATGAATAAATATGCTAAGAGAATGAGAGAGGAAGATAACAAGATGCACTCCTTTTGGACACATGCAAACTCTCCATCATCAGTCTCACACAATGTTCCTCCTTCAGATTTGACCAGGTTAGTAGCAGATTCTGATGCTTCCAACGACGAGAAAATAGTTGATTCGTCAGTTCCTAAACCTGATCAATATATCTCAGTTACTCGCGGGGACACAGAGGTCATGGCATAG

Protein sequence

>Msa0370510

MSENLKKTASDGHEKMLPVSLSQEQQAKIIEVRKLIGTLSDKESVYCSDASISRYLKSQNWNVKKASQMLKKSLKWRQEYKPEEITWDDVANEAETGKMYRPNYCAKDGRPVLIMRTNRQKSKTLVEEIKHFVYCMENAILNLPPHQEQRLGLAIMYDAPGIFQPFFSMVKVLLETENYNKIKFVYSNDQNTKKIMEGLFDMDQLEPAFGGNNDTEFDMNKYAKRMREEDNKMHSFWTHANSPSSVSHNVPPSDLTRLVADSDASNDEKIVDSSVPKPDQYISVTRGDTEVMA*