AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698860 MtrunA17_Chr4g0052401 99.080 326 2 1 1 326 463 787 0.0 668
Msa0698860 MtrunA17_Chr2g0297291 79.758 331 58 5 1 326 463 789 0.0 533
Msa0698860 MtrunA17_Chr2g0297321 78.550 331 62 5 1 326 21 347 0.0 522
Msa0698860 MtrunA17_Chr6g0461871 40.688 349 180 3 1 326 441 785 6.15e-85 271
Msa0698860 MtrunA17_Chr6g0451081 40.351 342 179 5 1 326 444 776 3.62e-82 264
Msa0698860 MtrunA17_Chr5g0429991 39.645 338 188 5 1 326 516 849 1.11e-79 259
Msa0698860 MtrunA17_Chr2g0279131 40.060 332 189 4 4 326 519 849 1.36e-78 256
Msa0698860 MtrunA17_Chr5g0413721 39.198 324 170 5 22 326 556 871 5.24e-77 252
Msa0698860 MtrunA17_Chr5g0430731 39.394 330 179 6 1 326 442 754 7.13e-76 247
Msa0698860 MtrunA17_Chr3g0128831 39.222 334 174 4 22 326 461 794 2.97e-74 243
Msa0698860 MtrunA17_Chr8g0365001 39.244 344 181 7 1 326 507 840 2.37e-72 239
Msa0698860 MtrunA17_Chr8g0387661 39.773 352 179 6 3 326 446 792 7.89e-70 231
Msa0698860 MtrunA17_Chr5g0430571 37.273 330 177 7 1 326 232 535 7.65e-67 218
Msa0698860 MtrunA17_Chr7g0268981 33.642 324 181 4 1 324 482 771 8.55e-63 212
Msa0698860 MtrunA17_Chr4g0055471 36.103 349 191 7 1 326 476 815 2.86e-62 211
Msa0698860 MtrunA17_Chr8g0393241 34.503 342 202 7 3 323 456 796 1.35e-61 209
Msa0698860 MtrunA17_Chr8g0380281 33.333 345 203 6 1 326 446 782 1.19e-54 190
Msa0698860 MtrunA17_Chr5g0413751 48.101 158 82 0 1 158 151 308 1.86e-53 177
Msa0698860 MtrunA17_Chr8g0344561 32.317 328 187 7 1 324 274 570 3.37e-53 183
Msa0698860 MtrunA17_Chr8g0365031 29.573 328 165 4 1 324 284 549 9.48e-53 182
Msa0698860 MtrunA17_Chr8g0344591 41.758 182 98 3 1 178 254 431 3.95e-43 154
Msa0698860 MtrunA17_Chr8g0375411 24.308 325 184 6 1 324 433 696 9.90e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698860 AT2G35060.2 71.515 330 82 5 1 326 472 793 4.66e-168 487
Msa0698860 AT2G35060.4 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0698860 AT2G35060.1 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0698860 AT2G35060.3 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0698860 AT1G31120.1 72.892 332 79 6 1 326 470 796 4.93e-163 474
Msa0698860 AT4G19960.4 64.286 336 103 3 5 326 254 586 4.18e-140 409
Msa0698860 AT4G19960.1 64.286 336 103 3 5 326 491 823 6.00e-137 408
Msa0698860 AT4G19960.2 64.286 336 103 3 5 326 475 807 8.16e-137 407
Msa0698860 AT4G19960.3 63.393 336 106 3 5 326 501 833 1.01e-136 408
Msa0698860 AT3G02050.1 42.614 352 172 5 1 326 442 789 1.75e-84 271
Msa0698860 AT4G33530.2 41.071 336 187 4 1 326 293 627 1.67e-83 265
Msa0698860 AT4G33530.1 41.071 336 187 4 1 326 521 855 9.68e-82 265
Msa0698860 AT5G09400.1 40.882 340 186 5 1 326 520 858 4.92e-79 258
Msa0698860 AT2G40540.1 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0698860 AT2G40540.5 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0698860 AT2G40540.4 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0698860 AT2G40540.2 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0698860 AT2G40540.3 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0698860 AT1G60160.1 37.952 332 192 4 1 326 504 827 5.23e-77 252
Msa0698860 AT4G23640.1 38.218 348 189 5 3 326 430 775 3.83e-73 241
Msa0698860 AT5G14880.1 39.823 339 189 4 1 326 445 781 4.61e-73 240
Msa0698860 AT1G70300.1 35.988 339 203 3 1 326 445 782 1.61e-67 226
Msa0698860 AT4G13420.1 33.642 324 206 1 1 324 469 783 3.18e-62 211
Msa0698860 AT2G30070.2 50.000 182 91 0 1 182 322 503 1.66e-59 201
Msa0698860 AT2G30070.2 38.961 77 47 0 250 326 516 592 1.46e-12 68.9
Msa0698860 AT2G30070.1 50.000 182 91 0 1 182 442 623 7.28e-59 201
Msa0698860 AT2G30070.1 38.961 77 47 0 250 326 636 712 1.82e-12 68.6

Find 77 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTATCTCTCTTCTTC+CGG 0.262164 4_4:-69289266 None:intergenic
GCTGGGGTGGTTCACATATT+AGG 0.264983 4_4:+69289665 Msa0698860:CDS
ATTATATATATGCATTTCTT+AGG 0.280181 4_4:+69289744 Msa0698860:CDS
TCAGATGAATACAGTTTATA+TGG 0.316978 4_4:+69289446 Msa0698860:CDS
CTCGGGCTTGGCCCAAGTTT+AGG 0.337026 4_4:+69289095 Msa0698860:CDS
CAAGGTATCTCTCTTCTTCC+GGG 0.346404 4_4:-69289265 None:intergenic
CGAAAGATGTGGTAATTCTT+AGG 0.358981 4_4:-69289302 None:intergenic
ATTATGTTTGTCTGGCATTA+CGG 0.372759 4_4:+69289017 Msa0698860:CDS
GTCTCGATGGCATGGATTCT+CGG 0.378294 4_4:+69289077 Msa0698860:CDS
TGGGTTCCTCTTGTAATTGC+CGG 0.384804 4_4:+69288981 Msa0698860:CDS
ATGGCATGGATTCTCGGGCT+TGG 0.385857 4_4:+69289083 Msa0698860:CDS
TTAGGACTTGTTCGTGTACC+TGG 0.405042 4_4:+69289113 Msa0698860:CDS
GTGTAGACTAGTCCGATTCC+AGG 0.417435 4_4:-69289131 None:intergenic
TCTTCCGGGACGGTGTAAAC+AGG 0.434145 4_4:-69289251 None:intergenic
ACTCTTCGTCTTTCTTGTGC+AGG 0.434280 4_4:-69289352 None:intergenic
TTGAATAACTGCAGGGACGC+TGG 0.441557 4_4:+69289647 Msa0698860:CDS
TCTCGATGGCATGGATTCTC+GGG 0.451131 4_4:+69289078 Msa0698860:CDS
CTAACAGTGATATTCACATT+TGG 0.460145 4_4:-69289575 None:intergenic
CAAATGTGAATATCACTGTT+AGG 0.464701 4_4:+69289576 Msa0698860:CDS
TATTGGTGTGGCGCTGCCAC+TGG 0.464822 4_4:+69288871 Msa0698860:CDS
TGAATAACTGCAGGGACGCT+GGG 0.476846 4_4:+69289648 Msa0698860:CDS
TCAAAGTTAATCAAGGTGGA+TGG 0.480215 4_4:+69288961 Msa0698860:CDS
CTTGTTCGTGTACCTGGAAT+CGG 0.484864 4_4:+69289119 Msa0698860:CDS
AGATACCTTGTAAAGAGGAT+TGG 0.486463 4_4:+69289278 Msa0698860:CDS
TTTCGATGTGTGGCACGGTA+TGG 0.488737 4_4:+69289320 Msa0698860:CDS
CATTTCTTAGGAAAATATGC+AGG 0.492742 4_4:+69289756 Msa0698860:CDS
AAGAGAGATACCTTGTAAAG+AGG 0.504738 4_4:+69289273 Msa0698860:CDS
TAGGTCCAATCCTCTTTACA+AGG 0.508685 4_4:-69289283 None:intergenic
GTAATCTTCAAAGTTAATCA+AGG 0.509932 4_4:+69288954 Msa0698860:CDS
CACTTGCTTATCATTGATTG+TGG 0.513008 4_4:+69288911 Msa0698860:CDS
CAAGCTTAACAAACAGTGAA+AGG 0.516927 4_4:-69289397 None:intergenic
ACAGTGATATTCACATTTGG+CGG 0.519018 4_4:-69289572 None:intergenic
ACACGAACAAGTCCTAAACT+TGG 0.520151 4_4:-69289107 None:intergenic
CACAGTTGTGATGGCAAGGA+GGG 0.523327 4_4:+69289691 Msa0698860:CDS
CAGTTTATATGGAGGACAGC+AGG 0.530247 4_4:+69289457 Msa0698860:CDS
CAAAGTTAATCAAGGTGGAT+GGG 0.539107 4_4:+69288962 Msa0698860:CDS
TGTTAAGCTTGAATCTATGA+TGG 0.539727 4_4:+69289409 Msa0698860:CDS
CATGAGAGTCTCTTAAATGT+TGG 0.554708 4_4:+69289806 Msa0698860:CDS
ACAACAACAGAATGGATGGC+TGG 0.560974 4_4:-69289206 None:intergenic
AGGTCCTGCGGTCAAGTAAG+TGG 0.564330 4_4:+69289596 Msa0698860:CDS
CCTTCCTGTTTACACCGTCC+CGG 0.569084 4_4:+69289247 Msa0698860:CDS
TTGGCCACTTACTTGACCGC+AGG 0.570429 4_4:-69289600 None:intergenic
CAAGTAAGTGGCCAAACCGA+GGG 0.574154 4_4:+69289608 Msa0698860:CDS
CAACAGAATGGATGGCTGGT+AGG 0.574816 4_4:-69289202 None:intergenic
TAACTGCAGGGACGCTGGGG+TGG 0.576829 4_4:+69289652 Msa0698860:CDS
GTATCTCTCTTCTTCCGGGA+CGG 0.583221 4_4:-69289261 None:intergenic
GTCTACACAGAACTTGCAAG+TGG 0.583444 4_4:+69289146 Msa0698860:CDS
AGAATGGATGGCTGGTAGGT+TGG 0.583797 4_4:-69289198 None:intergenic
ATTAGGAAACACAGTTGTGA+TGG 0.587624 4_4:+69289682 Msa0698860:CDS
GAAACACAGTTGTGATGGCA+AGG 0.591010 4_4:+69289687 Msa0698860:CDS
GTGATATTCACATTTGGCGG+CGG 0.592182 4_4:-69289569 None:intergenic
TCAAGTAAGTGGCCAAACCG+AGG 0.600769 4_4:+69289607 Msa0698860:CDS
TTACCACATCTTTCGATGTG+TGG 0.605821 4_4:+69289310 Msa0698860:CDS
CACGAACAAGTCCTAAACTT+GGG 0.614583 4_4:-69289106 None:intergenic
ATAGTAAAGTCTCGATGGCA+TGG 0.620677 4_4:+69289069 Msa0698860:CDS
AATATCACTGTTAGGTCCTG+CGG 0.624494 4_4:+69289584 Msa0698860:CDS
AAGCACGACTTCTTCGAATG+TGG 0.624780 4_4:+69289502 Msa0698860:CDS
AATCAATGATAAGCAAGTGA+AGG 0.625371 4_4:-69288907 None:intergenic
ATTTCTTAGGAAAATATGCA+GGG 0.625694 4_4:+69289757 Msa0698860:CDS
AACACTCCGGCAATTACAAG+AGG 0.633389 4_4:-69288987 None:intergenic
ATCTTCAAAGTTAATCAAGG+TGG 0.637689 4_4:+69288957 Msa0698860:CDS
AATGCATAGTAAAGTCTCGA+TGG 0.638063 4_4:+69289064 Msa0698860:CDS
AAGCTTGAATCTATGATGGA+AGG 0.641141 4_4:+69289413 Msa0698860:CDS
GAATAACTGCAGGGACGCTG+GGG 0.645282 4_4:+69289649 Msa0698860:CDS
ACATCTTTCGATGTGTGGCA+CGG 0.647935 4_4:+69289315 Msa0698860:CDS
GATGAATACAGTTTATATGG+AGG 0.656772 4_4:+69289449 Msa0698860:CDS
CCGGGACGGTGTAAACAGGA+AGG 0.657637 4_4:-69289247 None:intergenic
TTATATGGAGGACAGCAGGA+TGG 0.666470 4_4:+69289461 Msa0698860:CDS
ACACAGTTGTGATGGCAAGG+AGG 0.669872 4_4:+69289690 Msa0698860:CDS
GTGCCACACATCGAAAGATG+TGG 0.686236 4_4:-69289313 None:intergenic
GTGATGAAATGAGAAAAGAT+CGG 0.689117 4_4:-69289176 None:intergenic
AAGTAAGTGGCCAAACCGAG+GGG 0.689786 4_4:+69289609 Msa0698860:CDS
ATGAAATGAGAAAAGATCGG+TGG 0.702922 4_4:-69289173 None:intergenic
AGTAAGTGGCCAAACCGAGG+GGG 0.709182 4_4:+69289610 Msa0698860:CDS
ACATTTAAGAGACTCTCATG+AGG 0.718347 4_4:-69289803 None:intergenic
GATGGCGTGTTGAATAACAA+CGG 0.731429 4_4:+69289479 Msa0698860:CDS
AGGCGAGTACAAGAATCCAG+TGG 0.751362 4_4:-69288887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATATGCATTTCTT+AGG + chr4_4:69289744-69289763 Msa0698860:CDS 15.0%
!! ATTATATATATGCATTTCTT+AGG + chr4_4:69289744-69289763 Msa0698860:CDS 15.0%
!!! TTTTTATCATTATGTTTGTC+TGG + chr4_4:69289009-69289028 Msa0698860:CDS 20.0%
!!! TTTTTATCATTATGTTTGTC+TGG + chr4_4:69289009-69289028 Msa0698860:CDS 20.0%
! GTAATCTTCAAAGTTAATCA+AGG + chr4_4:69288954-69288973 Msa0698860:CDS 25.0%
! CATAATGATAAAAAACACTC+CGG - chr4_4:69289003-69289022 None:intergenic 25.0%
! ATACAAAAACAACAACAGAA+TGG - chr4_4:69289217-69289236 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG + chr4_4:69289446-69289465 Msa0698860:CDS 25.0%
!! TTGAATTTTTGAATAACTGC+AGG + chr4_4:69289639-69289658 Msa0698860:CDS 25.0%
!! TGAATTTTTGAATAACTGCA+GGG + chr4_4:69289640-69289659 Msa0698860:CDS 25.0%
! ATTTCTTAGGAAAATATGCA+GGG + chr4_4:69289757-69289776 Msa0698860:CDS 25.0%
! GTAATCTTCAAAGTTAATCA+AGG + chr4_4:69288954-69288973 Msa0698860:CDS 25.0%
! CATAATGATAAAAAACACTC+CGG - chr4_4:69289003-69289022 None:intergenic 25.0%
! ATACAAAAACAACAACAGAA+TGG - chr4_4:69289217-69289236 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG + chr4_4:69289446-69289465 Msa0698860:CDS 25.0%
!! TTGAATTTTTGAATAACTGC+AGG + chr4_4:69289639-69289658 Msa0698860:CDS 25.0%
!! TGAATTTTTGAATAACTGCA+GGG + chr4_4:69289640-69289659 Msa0698860:CDS 25.0%
! ATTTCTTAGGAAAATATGCA+GGG + chr4_4:69289757-69289776 Msa0698860:CDS 25.0%
AATCAATGATAAGCAAGTGA+AGG - chr4_4:69288910-69288929 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG + chr4_4:69288957-69288976 Msa0698860:CDS 30.0%
ATTATGTTTGTCTGGCATTA+CGG + chr4_4:69289017-69289036 Msa0698860:CDS 30.0%
GTGATGAAATGAGAAAAGAT+CGG - chr4_4:69289179-69289198 None:intergenic 30.0%
AAAAACAACAACAGAATGGA+TGG - chr4_4:69289213-69289232 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG + chr4_4:69289409-69289428 Msa0698860:CDS 30.0%
GATGAATACAGTTTATATGG+AGG + chr4_4:69289449-69289468 Msa0698860:CDS 30.0%
CTAACAGTGATATTCACATT+TGG - chr4_4:69289578-69289597 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG + chr4_4:69289576-69289595 Msa0698860:CDS 30.0%
CATTTCTTAGGAAAATATGC+AGG + chr4_4:69289756-69289775 Msa0698860:CDS 30.0%
AATCAATGATAAGCAAGTGA+AGG - chr4_4:69288910-69288929 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG + chr4_4:69288957-69288976 Msa0698860:CDS 30.0%
ATTATGTTTGTCTGGCATTA+CGG + chr4_4:69289017-69289036 Msa0698860:CDS 30.0%
GTGATGAAATGAGAAAAGAT+CGG - chr4_4:69289179-69289198 None:intergenic 30.0%
AAAAACAACAACAGAATGGA+TGG - chr4_4:69289213-69289232 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG + chr4_4:69289409-69289428 Msa0698860:CDS 30.0%
GATGAATACAGTTTATATGG+AGG + chr4_4:69289449-69289468 Msa0698860:CDS 30.0%
CTAACAGTGATATTCACATT+TGG - chr4_4:69289578-69289597 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG + chr4_4:69289576-69289595 Msa0698860:CDS 30.0%
CATTTCTTAGGAAAATATGC+AGG + chr4_4:69289756-69289775 Msa0698860:CDS 30.0%
! CACTTGCTTATCATTGATTG+TGG + chr4_4:69288911-69288930 Msa0698860:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG + chr4_4:69288961-69288980 Msa0698860:CDS 35.0%
CAAAGTTAATCAAGGTGGAT+GGG + chr4_4:69288962-69288981 Msa0698860:CDS 35.0%
AATGCATAGTAAAGTCTCGA+TGG + chr4_4:69289064-69289083 Msa0698860:CDS 35.0%
ATGAAATGAGAAAAGATCGG+TGG - chr4_4:69289176-69289195 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG + chr4_4:69289273-69289292 Msa0698860:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG + chr4_4:69289278-69289297 Msa0698860:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG - chr4_4:69289305-69289324 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG - chr4_4:69289400-69289419 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG + chr4_4:69289413-69289432 Msa0698860:CDS 35.0%
ACAGTGATATTCACATTTGG+CGG - chr4_4:69289575-69289594 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG + chr4_4:69289682-69289701 Msa0698860:CDS 35.0%
ACATTTAAGAGACTCTCATG+AGG - chr4_4:69289806-69289825 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG + chr4_4:69289806-69289825 Msa0698860:CDS 35.0%
! CACTTGCTTATCATTGATTG+TGG + chr4_4:69288911-69288930 Msa0698860:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG + chr4_4:69288961-69288980 Msa0698860:CDS 35.0%
CAAAGTTAATCAAGGTGGAT+GGG + chr4_4:69288962-69288981 Msa0698860:CDS 35.0%
AATGCATAGTAAAGTCTCGA+TGG + chr4_4:69289064-69289083 Msa0698860:CDS 35.0%
ATGAAATGAGAAAAGATCGG+TGG - chr4_4:69289176-69289195 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG + chr4_4:69289273-69289292 Msa0698860:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG + chr4_4:69289278-69289297 Msa0698860:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG - chr4_4:69289305-69289324 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG - chr4_4:69289400-69289419 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG + chr4_4:69289413-69289432 Msa0698860:CDS 35.0%
ACAGTGATATTCACATTTGG+CGG - chr4_4:69289575-69289594 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG + chr4_4:69289682-69289701 Msa0698860:CDS 35.0%
ACATTTAAGAGACTCTCATG+AGG - chr4_4:69289806-69289825 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG + chr4_4:69289806-69289825 Msa0698860:CDS 35.0%
ATAGTAAAGTCTCGATGGCA+TGG + chr4_4:69289069-69289088 Msa0698860:CDS 40.0%
CACGAACAAGTCCTAAACTT+GGG - chr4_4:69289109-69289128 None:intergenic 40.0%
ACACGAACAAGTCCTAAACT+TGG - chr4_4:69289110-69289129 None:intergenic 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG - chr4_4:69289269-69289288 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG - chr4_4:69289286-69289305 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG + chr4_4:69289310-69289329 Msa0698860:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG + chr4_4:69289479-69289498 Msa0698860:CDS 40.0%
AATATCACTGTTAGGTCCTG+CGG + chr4_4:69289584-69289603 Msa0698860:CDS 40.0%
! AAATTCAAGTTCATCCCCCT+CGG - chr4_4:69289627-69289646 None:intergenic 40.0%
ATAGTAAAGTCTCGATGGCA+TGG + chr4_4:69289069-69289088 Msa0698860:CDS 40.0%
CACGAACAAGTCCTAAACTT+GGG - chr4_4:69289109-69289128 None:intergenic 40.0%
ACACGAACAAGTCCTAAACT+TGG - chr4_4:69289110-69289129 None:intergenic 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG - chr4_4:69289269-69289288 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG - chr4_4:69289286-69289305 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG + chr4_4:69289310-69289329 Msa0698860:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG + chr4_4:69289479-69289498 Msa0698860:CDS 40.0%
AATATCACTGTTAGGTCCTG+CGG + chr4_4:69289584-69289603 Msa0698860:CDS 40.0%
! AAATTCAAGTTCATCCCCCT+CGG - chr4_4:69289627-69289646 None:intergenic 40.0%
TGGGTTCCTCTTGTAATTGC+CGG + chr4_4:69288981-69289000 Msa0698860:CDS 45.0%
AACACTCCGGCAATTACAAG+AGG - chr4_4:69288990-69289009 None:intergenic 45.0%
! TTAGGACTTGTTCGTGTACC+TGG + chr4_4:69289113-69289132 Msa0698860:CDS 45.0%
CTTGTTCGTGTACCTGGAAT+CGG + chr4_4:69289119-69289138 Msa0698860:CDS 45.0%
GTCTACACAGAACTTGCAAG+TGG + chr4_4:69289146-69289165 Msa0698860:CDS 45.0%
ACAACAACAGAATGGATGGC+TGG - chr4_4:69289209-69289228 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG - chr4_4:69289268-69289287 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG + chr4_4:69289315-69289334 Msa0698860:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG - chr4_4:69289355-69289374 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG + chr4_4:69289457-69289476 Msa0698860:CDS 45.0%
TTATATGGAGGACAGCAGGA+TGG + chr4_4:69289461-69289480 Msa0698860:CDS 45.0%
AAGCACGACTTCTTCGAATG+TGG + chr4_4:69289502-69289521 Msa0698860:CDS 45.0%
GTGATATTCACATTTGGCGG+CGG - chr4_4:69289572-69289591 None:intergenic 45.0%
GAAACACAGTTGTGATGGCA+AGG + chr4_4:69289687-69289706 Msa0698860:CDS 45.0%
TGGGTTCCTCTTGTAATTGC+CGG + chr4_4:69288981-69289000 Msa0698860:CDS 45.0%
AACACTCCGGCAATTACAAG+AGG - chr4_4:69288990-69289009 None:intergenic 45.0%
! TTAGGACTTGTTCGTGTACC+TGG + chr4_4:69289113-69289132 Msa0698860:CDS 45.0%
CTTGTTCGTGTACCTGGAAT+CGG + chr4_4:69289119-69289138 Msa0698860:CDS 45.0%
GTCTACACAGAACTTGCAAG+TGG + chr4_4:69289146-69289165 Msa0698860:CDS 45.0%
ACAACAACAGAATGGATGGC+TGG - chr4_4:69289209-69289228 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG - chr4_4:69289268-69289287 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG + chr4_4:69289315-69289334 Msa0698860:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG - chr4_4:69289355-69289374 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG + chr4_4:69289457-69289476 Msa0698860:CDS 45.0%
TTATATGGAGGACAGCAGGA+TGG + chr4_4:69289461-69289480 Msa0698860:CDS 45.0%
AAGCACGACTTCTTCGAATG+TGG + chr4_4:69289502-69289521 Msa0698860:CDS 45.0%
GTGATATTCACATTTGGCGG+CGG - chr4_4:69289572-69289591 None:intergenic 45.0%
GAAACACAGTTGTGATGGCA+AGG + chr4_4:69289687-69289706 Msa0698860:CDS 45.0%
AGGCGAGTACAAGAATCCAG+TGG - chr4_4:69288890-69288909 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG + chr4_4:69289077-69289096 Msa0698860:CDS 50.0%
TCTCGATGGCATGGATTCTC+GGG + chr4_4:69289078-69289097 Msa0698860:CDS 50.0%
! GTGTAGACTAGTCCGATTCC+AGG - chr4_4:69289134-69289153 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG - chr4_4:69289201-69289220 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG - chr4_4:69289205-69289224 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG - chr4_4:69289264-69289283 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG - chr4_4:69289316-69289335 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG + chr4_4:69289320-69289339 Msa0698860:CDS 50.0%
TCAAGTAAGTGGCCAAACCG+AGG + chr4_4:69289607-69289626 Msa0698860:CDS 50.0%
CAAGTAAGTGGCCAAACCGA+GGG + chr4_4:69289608-69289627 Msa0698860:CDS 50.0%
AAGTAAGTGGCCAAACCGAG+GGG + chr4_4:69289609-69289628 Msa0698860:CDS 50.0%
TTGAATAACTGCAGGGACGC+TGG + chr4_4:69289647-69289666 Msa0698860:CDS 50.0%
TGAATAACTGCAGGGACGCT+GGG + chr4_4:69289648-69289667 Msa0698860:CDS 50.0%
GCTGGGGTGGTTCACATATT+AGG + chr4_4:69289665-69289684 Msa0698860:CDS 50.0%
ACACAGTTGTGATGGCAAGG+AGG + chr4_4:69289690-69289709 Msa0698860:CDS 50.0%
CACAGTTGTGATGGCAAGGA+GGG + chr4_4:69289691-69289710 Msa0698860:CDS 50.0%
AGGCGAGTACAAGAATCCAG+TGG - chr4_4:69288890-69288909 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG + chr4_4:69289077-69289096 Msa0698860:CDS 50.0%
TCTCGATGGCATGGATTCTC+GGG + chr4_4:69289078-69289097 Msa0698860:CDS 50.0%
! GTGTAGACTAGTCCGATTCC+AGG - chr4_4:69289134-69289153 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG - chr4_4:69289201-69289220 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG - chr4_4:69289205-69289224 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG - chr4_4:69289264-69289283 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG - chr4_4:69289316-69289335 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG + chr4_4:69289320-69289339 Msa0698860:CDS 50.0%
TCAAGTAAGTGGCCAAACCG+AGG + chr4_4:69289607-69289626 Msa0698860:CDS 50.0%
CAAGTAAGTGGCCAAACCGA+GGG + chr4_4:69289608-69289627 Msa0698860:CDS 50.0%
AAGTAAGTGGCCAAACCGAG+GGG + chr4_4:69289609-69289628 Msa0698860:CDS 50.0%
TTGAATAACTGCAGGGACGC+TGG + chr4_4:69289647-69289666 Msa0698860:CDS 50.0%
TGAATAACTGCAGGGACGCT+GGG + chr4_4:69289648-69289667 Msa0698860:CDS 50.0%
GCTGGGGTGGTTCACATATT+AGG + chr4_4:69289665-69289684 Msa0698860:CDS 50.0%
ACACAGTTGTGATGGCAAGG+AGG + chr4_4:69289690-69289709 Msa0698860:CDS 50.0%
CACAGTTGTGATGGCAAGGA+GGG + chr4_4:69289691-69289710 Msa0698860:CDS 50.0%
ATGGCATGGATTCTCGGGCT+TGG + chr4_4:69289083-69289102 Msa0698860:CDS 55.0%
CCTTCCTGTTTACACCGTCC+CGG + chr4_4:69289247-69289266 Msa0698860:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG - chr4_4:69289254-69289273 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG + chr4_4:69289596-69289615 Msa0698860:CDS 55.0%
TTGGCCACTTACTTGACCGC+AGG - chr4_4:69289603-69289622 None:intergenic 55.0%
AGTAAGTGGCCAAACCGAGG+GGG + chr4_4:69289610-69289629 Msa0698860:CDS 55.0%
CAAGTTCATCCCCCTCGGTT+TGG - chr4_4:69289622-69289641 None:intergenic 55.0%
GAATAACTGCAGGGACGCTG+GGG + chr4_4:69289649-69289668 Msa0698860:CDS 55.0%
ATGGCATGGATTCTCGGGCT+TGG + chr4_4:69289083-69289102 Msa0698860:CDS 55.0%
CCTTCCTGTTTACACCGTCC+CGG + chr4_4:69289247-69289266 Msa0698860:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG - chr4_4:69289254-69289273 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG + chr4_4:69289596-69289615 Msa0698860:CDS 55.0%
TTGGCCACTTACTTGACCGC+AGG - chr4_4:69289603-69289622 None:intergenic 55.0%
AGTAAGTGGCCAAACCGAGG+GGG + chr4_4:69289610-69289629 Msa0698860:CDS 55.0%
CAAGTTCATCCCCCTCGGTT+TGG - chr4_4:69289622-69289641 None:intergenic 55.0%
GAATAACTGCAGGGACGCTG+GGG + chr4_4:69289649-69289668 Msa0698860:CDS 55.0%
TATTGGTGTGGCGCTGCCAC+TGG + chr4_4:69288871-69288890 Msa0698860:CDS 60.0%
CTCGGGCTTGGCCCAAGTTT+AGG + chr4_4:69289095-69289114 Msa0698860:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG - chr4_4:69289250-69289269 None:intergenic 60.0%
TATTGGTGTGGCGCTGCCAC+TGG + chr4_4:69288871-69288890 Msa0698860:CDS 60.0%
CTCGGGCTTGGCCCAAGTTT+AGG + chr4_4:69289095-69289114 Msa0698860:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG - chr4_4:69289250-69289269 None:intergenic 60.0%
TAACTGCAGGGACGCTGGGG+TGG + chr4_4:69289652-69289671 Msa0698860:CDS 65.0%
TAACTGCAGGGACGCTGGGG+TGG + chr4_4:69289652-69289671 Msa0698860:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 69288867 69289847 69288867 ID=Msa0698860;Name=Msa0698860
chr4_4 mRNA 69288867 69289847 69288867 ID=Msa0698860-mRNA-1;Parent=Msa0698860;Name=Msa0698860-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|326
chr4_4 exon 69288867 69289847 69288867 ID=Msa0698860-mRNA-1:exon:20758;Parent=Msa0698860-mRNA-1
chr4_4 CDS 69288867 69289847 69288867 ID=Msa0698860-mRNA-1:cds;Parent=Msa0698860-mRNA-1
Gene Sequence

>Msa0698860

ATGATATTGGTGTGGCGCTGCCACTGGATTCTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTTAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATCATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAATTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCTGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTTGTATGCGTCAAATACCTTCCTGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAGAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGATGAATACAGTTTATATGGAGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATGTGAATATCACTGTTAGGTCCTGCGGTCAAGTAAGTGGCCAAACCGAGGGGGATGAACTTGAATTTTTGAATAACTGCAGGGACGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG

Protein sequence

>Msa0698860

MILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSDEYSLYGGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNVNITVRSCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*