AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497030 MtrunA17_Chr3g0091791 95.139 144 0 1 7 143 1 144 3.51e-95 271
Msa0497030 MtrunA17_Chr8g0372081 45.763 59 32 0 78 136 60 118 7.07e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497030 AT1G26550.1 87.402 127 9 1 24 143 16 142 1.54e-70 209

Find 61 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTCAGATAAGATAATA+TGG 0.306070 3_4:-29007983 None:intergenic
AAAGATGGCTGGCCCATTCC+AGG 0.336869 3_4:+29007426 Msa0497030:CDS
GTGTGTTGAAGGCAACTTCC+TGG 0.343784 3_4:-29007444 None:intergenic
ACCATCTTGCAGCTTCTTGT+AGG 0.370602 3_4:-29006676 None:intergenic
TTGAGCACTTAAGTGTTGTC+TGG 0.425999 3_4:+29008058 Msa0497030:three_prime_UTR
AATACCTTTGCAAACTCTGC+TGG 0.438727 3_4:-29006726 None:intergenic
GAGTATTCTGAATGCCCATC+AGG 0.445595 3_4:+29007367 Msa0497030:CDS
TCTCCACCCTTCTTTCCTGA+TGG 0.455060 3_4:-29007382 None:intergenic
CTCCACCCTTCTTTCCTGAT+GGG 0.462426 3_4:-29007381 None:intergenic
GGGAAAGCTGCTGATGGGCT+TGG 0.479109 3_4:+29006252 Msa0497030:CDS
GGAGCACTGGTAACTCCAAC+AGG 0.481302 3_4:-29007466 None:intergenic
TCAGTTATCTAAGTATTAGA+AGG 0.482130 3_4:-29008159 None:intergenic
CGCAAAGGCAAAGGAGTCAA+AGG 0.482750 3_4:+29006167 Msa0497030:CDS
GGCAAAGGAGTCAAAGGGTA+AGG 0.483433 3_4:+29006173 Msa0497030:CDS
GGAAAGAAGGGTGGAGACCT+TGG 0.487014 3_4:+29007388 Msa0497030:CDS
GTCAAAGGGTAAGGGAAAGC+AGG 0.489595 3_4:+29006182 Msa0497030:CDS
GAGAATGCTTCCAAGGGAAA+AGG 0.493127 3_4:+29006222 Msa0497030:CDS
TGAATGCCCATCAGGAAAGA+AGG 0.494243 3_4:+29007375 Msa0497030:CDS
ATGGTTTCCACGAGGAAAGA+TGG 0.495254 3_4:+29007411 Msa0497030:CDS
TGAAGGCAACTTCCTGGAAT+GGG 0.503879 3_4:-29007438 None:intergenic
AACTCCAACAGGTGTGTTGA+AGG 0.504286 3_4:-29007455 None:intergenic
AAGATGGTTGGCTTGACAAT+GGG 0.509183 3_4:+29006691 Msa0497030:CDS
CGTTGATTTGAAAGGAGCAC+TGG 0.509492 3_4:-29007479 None:intergenic
AAAGGTGGGAAAGCTGCTGA+TGG 0.525616 3_4:+29006246 Msa0497030:CDS
GAGCAATACGTTGATTTGAA+AGG 0.530210 3_4:-29007487 None:intergenic
GTGTTGTCTGGTTAAATGAT+CGG 0.534992 3_4:+29008070 Msa0497030:three_prime_UTR
CGATCAGCACACATATATGT+TGG 0.537728 3_4:-29008134 None:intergenic
TTGAAGGCAACTTCCTGGAA+TGG 0.541346 3_4:-29007439 None:intergenic
GCTTCCAAGGGAAAAGGAAA+AGG 0.563501 3_4:+29006228 Msa0497030:CDS
AAGTGATGAGAATGCTTCCA+AGG 0.564213 3_4:+29006215 Msa0497030:CDS
TGAATAGTTGTTGGAACGAT+GGG 0.564254 3_4:+29006138 Msa0497030:intron
AGAAGGGTGGAGACCTTGGA+TGG 0.573215 3_4:+29007392 Msa0497030:CDS
TCCAAGGGAAAAGGAAAAGG+TGG 0.576313 3_4:+29006231 Msa0497030:CDS
GTTGCCTTCAACACACCTGT+TGG 0.577492 3_4:+29007451 Msa0497030:CDS
AGCAACCCTAAGAACATGAA+AGG 0.580108 3_4:+29004663 None:intergenic
TACCATATTATCTTATCTGA+AGG 0.583293 3_4:+29007981 Msa0497030:CDS
GCAAAGGCAAAGGAGTCAAA+GGG 0.585236 3_4:+29006168 Msa0497030:CDS
AAGGGAAAGCAGGCTGCAAG+TGG 0.585506 3_4:+29006192 Msa0497030:CDS
CAAGATGGTTGGCTTGACAA+TGG 0.586005 3_4:+29006690 Msa0497030:CDS
ACAAGAAGCTGCAAGATGGT+TGG 0.586477 3_4:+29006679 Msa0497030:CDS
TTTCCACGAGGAAAGATGGC+TGG 0.587993 3_4:+29007415 Msa0497030:CDS
GGGAAAAGACGCAAAGGCAA+AGG 0.594129 3_4:+29006158 Msa0497030:CDS
ATAATATATGTGAATGTGGA+TGG 0.596312 3_4:+29008184 Msa0497030:three_prime_UTR
GAATGCCCATCAGGAAAGAA+GGG 0.596490 3_4:+29007376 Msa0497030:CDS
ATGAATAGTTGTTGGAACGA+TGG 0.598127 3_4:+29006137 Msa0497030:intron
GCCTACAAGAAGCTGCAAGA+TGG 0.599336 3_4:+29006675 Msa0497030:CDS
TTCCTCGTGGAAACCATCCA+AGG 0.602870 3_4:-29007405 None:intergenic
AAGGTGGGAAAGCTGCTGAT+GGG 0.609652 3_4:+29006247 Msa0497030:CDS
ACCTTTGCAAACTCTGCTGG+AGG 0.617263 3_4:-29006723 None:intergenic
AGAACGAAGCTGAGTTTCAG+TGG 0.620184 3_4:+29008032 Msa0497030:three_prime_UTR
TCCTCCAGCAGAGTTTGCAA+AGG 0.623533 3_4:+29006722 Msa0497030:CDS
GAGCATAATATATGTGAATG+TGG 0.625216 3_4:+29008180 Msa0497030:three_prime_UTR
GCAAAGGAGTCAAAGGGTAA+GGG 0.629245 3_4:+29006174 Msa0497030:CDS
CATATCTTATGTGAGAAACA+AGG 0.634519 3_4:+29006639 Msa0497030:CDS
AACGATGGGAAAAGACGCAA+AGG 0.635307 3_4:+29006152 Msa0497030:CDS
AGTGATGAGAATGCTTCCAA+GGG 0.642736 3_4:+29006216 Msa0497030:CDS
TGCCCATCAGGAAAGAAGGG+TGG 0.643391 3_4:+29007379 Msa0497030:CDS
CCAAGGGAAAAGGAAAAGGT+GGG 0.647496 3_4:+29006232 Msa0497030:CDS
GGGCCAGCCATCTTTCCTCG+TGG 0.659422 3_4:-29007418 None:intergenic
AGATGGTTGGCTTGACAATG+GGG 0.681394 3_4:+29006692 Msa0497030:CDS
GACCTTGGATGGTTTCCACG+AGG 0.719867 3_4:+29007403 Msa0497030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAATTTATAAAATCAC+GGG + chr3_4:29005229-29005248 Msa0497030:intron 10.0%
!!! TCAAAAATATATTGAAATTT+TGG + chr3_4:29006432-29006451 Msa0497030:intron 10.0%
!! TAACTAATCAATCAAATATA+GGG - chr3_4:29004987-29005006 None:intergenic 15.0%
!!! ATTAGTTAGCTTATAATTAT+GGG + chr3_4:29004999-29005018 Msa0497030:intron 15.0%
!!! TTTTAAAAGCAAATTTGAAA+CGG - chr3_4:29005199-29005218 None:intergenic 15.0%
!!! TCAAATTTGCTTTTAAAAAT+CGG + chr3_4:29005201-29005220 Msa0497030:intron 15.0%
!!! AAGGTATTTTTCATTTATTT+TGG + chr3_4:29006741-29006760 Msa0497030:intron 15.0%
!!! ATATTTTGATATCAACAAAT+CGG - chr3_4:29007139-29007158 None:intergenic 15.0%
!! GAAAATATGTGTATTTAATT+TGG - chr3_4:29007682-29007701 None:intergenic 15.0%
!! CTAACTAATCAATCAAATAT+AGG - chr3_4:29004988-29005007 None:intergenic 20.0%
!!! GATTAGTTAGCTTATAATTA+TGG + chr3_4:29004998-29005017 Msa0497030:intron 20.0%
!! ATCCTTATTGTTCATTTATA+TGG + chr3_4:29005382-29005401 Msa0497030:intron 20.0%
!! ATCCATATAAATGAACAATA+AGG - chr3_4:29005387-29005406 None:intergenic 20.0%
!! AGAAAACATTCAAAGTAAAT+GGG - chr3_4:29006333-29006352 None:intergenic 20.0%
!! ACTTCAACTAATAAACATAA+GGG + chr3_4:29006365-29006384 Msa0497030:intron 20.0%
!! TCAAAGAAACTTATCATATA+CGG - chr3_4:29006564-29006583 None:intergenic 20.0%
!!! TTTGAATTTACATTGATTTC+TGG + chr3_4:29006595-29006614 Msa0497030:intron 20.0%
!! TTAAATAGAAAGCCAAATAA+GGG - chr3_4:29006952-29006971 None:intergenic 20.0%
!! TTTAAATAGAAAGCCAAATA+AGG - chr3_4:29006953-29006972 None:intergenic 20.0%
!!! ATTTTCATAATTACCTGTTA+AGG + chr3_4:29007736-29007755 Msa0497030:intron 20.0%
! TAGAGATTGAAATTCAACTT+GGG - chr3_4:29004950-29004969 None:intergenic 25.0%
! TTAGCTTATAATTATGGGTT+GGG + chr3_4:29005004-29005023 Msa0497030:intron 25.0%
! AAAAAGGACTAAATCATCTA+AGG - chr3_4:29005269-29005288 None:intergenic 25.0%
!! AGATGATTTAGTCCTTTTTA+AGG + chr3_4:29005270-29005289 Msa0497030:intron 25.0%
! ACATTGCATAATATATGCAT+GGG - chr3_4:29005330-29005349 None:intergenic 25.0%
! AATAAATCAGAAACTAACTC+TGG + chr3_4:29005950-29005969 Msa0497030:intron 25.0%
! AATTTCTTCATCTTCTATGT+TGG - chr3_4:29006039-29006058 None:intergenic 25.0%
! TTGATATGATGAATAGTTGT+TGG + chr3_4:29006129-29006148 Msa0497030:intron 25.0%
! AAAATTTGTACCTTTGACAT+AGG - chr3_4:29006286-29006305 None:intergenic 25.0%
! CAGAAAACATTCAAAGTAAA+TGG - chr3_4:29006334-29006353 None:intergenic 25.0%
! CACTTCAACTAATAAACATA+AGG + chr3_4:29006364-29006383 Msa0497030:intron 25.0%
!!! ATGCTTTTAGAAAGTAAACA+AGG + chr3_4:29006529-29006548 Msa0497030:intron 25.0%
!!! TATTTTGGAAGTTATACACT+AGG + chr3_4:29006756-29006775 Msa0497030:intron 25.0%
!! TTGGCTTTCTATTTAAAATG+AGG + chr3_4:29006956-29006975 Msa0497030:intron 25.0%
! GAAACTTATTATGTGGTAAA+TGG + chr3_4:29006983-29007002 Msa0497030:intron 25.0%
!! TAATTTGGAATCCTTAAAGA+TGG - chr3_4:29007667-29007686 None:intergenic 25.0%
! AATATGTGTATTCAATGCAT+TGG - chr3_4:29007719-29007738 None:intergenic 25.0%
!! GCTGATAACTTGTATAAAAA+TGG + chr3_4:29007831-29007850 Msa0497030:intron 25.0%
! TATAAGTTGTTTATCCAAAC+AGG + chr3_4:29007919-29007938 Msa0497030:intron 25.0%
! CATCCAACCAAATATTAATA+GGG - chr3_4:29007946-29007965 None:intergenic 25.0%
! ACATCCAACCAAATATTAAT+AGG - chr3_4:29007947-29007966 None:intergenic 25.0%
! TACCATATTATCTTATCTGA+AGG + chr3_4:29007981-29008000 Msa0497030:CDS 25.0%
! TTCCTTCAGATAAGATAATA+TGG - chr3_4:29007986-29008005 None:intergenic 25.0%
! TCAGTTATCTAAGTATTAGA+AGG - chr3_4:29008162-29008181 None:intergenic 25.0%
! ATAATATATGTGAATGTGGA+TGG + chr3_4:29008184-29008203 Msa0497030:three_prime_UTR 25.0%
AAATTCAGGAAGAACAATCA+AGG - chr3_4:29004783-29004802 None:intergenic 30.0%
TTCTATTCATTTGTGCTTAG+AGG + chr3_4:29004819-29004838 Msa0497030:intron 30.0%
CTAGAGATTGAAATTCAACT+TGG - chr3_4:29004951-29004970 None:intergenic 30.0%
! CAAGTTGAATTTCAATCTCT+AGG + chr3_4:29004949-29004968 Msa0497030:intron 30.0%
! GTTAGCTTATAATTATGGGT+TGG + chr3_4:29005003-29005022 Msa0497030:intron 30.0%
GACATTGCATAATATATGCA+TGG - chr3_4:29005331-29005350 None:intergenic 30.0%
TCTTTCTGTCAAACAAATAC+TGG + chr3_4:29005422-29005441 Msa0497030:intron 30.0%
TCATTGAACAAAAGTTTACG+AGG + chr3_4:29005577-29005596 Msa0497030:intron 30.0%
!!! TTACTGATTTTGCATTTTCC+AGG + chr3_4:29005659-29005678 Msa0497030:intron 30.0%
ATAGATGTTGCTAGTCATTT+CGG + chr3_4:29005729-29005748 Msa0497030:intron 30.0%
!!! TCTATATGAGCTTGTTTTGT+TGG + chr3_4:29005811-29005830 Msa0497030:intron 30.0%
!!! CTATATGAGCTTGTTTTGTT+GGG + chr3_4:29005812-29005831 Msa0497030:intron 30.0%
TTATCTCTACAGATATCAGA+TGG + chr3_4:29005838-29005857 Msa0497030:intron 30.0%
AGATTACAATCAGAATCAGT+TGG - chr3_4:29005928-29005947 None:intergenic 30.0%
TTGGACATTGTTAGATGATT+AGG - chr3_4:29005992-29006011 None:intergenic 30.0%
TATCACACATCAGATTACAT+TGG - chr3_4:29006011-29006030 None:intergenic 30.0%
ATCGTAAAAAGAACATAGTG+AGG - chr3_4:29006410-29006429 None:intergenic 30.0%
CATATCTTATGTGAGAAACA+AGG + chr3_4:29006639-29006658 Msa0497030:CDS 30.0%
GTAACAAATGTATAGCACTA+CGG - chr3_4:29006799-29006818 None:intergenic 30.0%
! AAAAAGAGAGTATAATTGCC+AGG + chr3_4:29006833-29006852 Msa0497030:intron 30.0%
! ATTGCCAGGAAATTTTTGAA+AGG + chr3_4:29006847-29006866 Msa0497030:intron 30.0%
!! TTGCCAGGAAATTTTTGAAA+GGG + chr3_4:29006848-29006867 Msa0497030:intron 30.0%
GTATACACTAAACCCTTATT+TGG + chr3_4:29006937-29006956 Msa0497030:intron 30.0%
AGGCTAAGAAACTTATTATG+TGG + chr3_4:29006976-29006995 Msa0497030:intron 30.0%
GCATATAATAGCAACTAGAA+GGG - chr3_4:29007518-29007537 None:intergenic 30.0%
TGCATATAATAGCAACTAGA+AGG - chr3_4:29007519-29007538 None:intergenic 30.0%
!! CTTATTTTCTTATGTTCTCG+AGG + chr3_4:29007791-29007810 Msa0497030:intron 30.0%
AATATTAATAGGGTCCTGTT+TGG - chr3_4:29007936-29007955 None:intergenic 30.0%
AACAGGACCCTATTAATATT+TGG + chr3_4:29007936-29007955 Msa0497030:intron 30.0%
!! GCTTTTTCTTTATGTGATTG+TGG + chr3_4:29008098-29008117 Msa0497030:three_prime_UTR 30.0%
GAGCATAATATATGTGAATG+TGG + chr3_4:29008180-29008199 Msa0497030:three_prime_UTR 30.0%
GTTGCAGAGTTTAGAAATTC+AGG - chr3_4:29004797-29004816 None:intergenic 35.0%
TCAACTTGGGTATCAGAAAA+TGG - chr3_4:29004937-29004956 None:intergenic 35.0%
!!! TCCTTTTTAAGGTGAATGAG+TGG + chr3_4:29005281-29005300 Msa0497030:intron 35.0%
!!! CCTTTTTAAGGTGAATGAGT+GGG + chr3_4:29005282-29005301 Msa0497030:intron 35.0%
!!! CTTTTTAAGGTGAATGAGTG+GGG + chr3_4:29005283-29005302 Msa0497030:intron 35.0%
TGCATAATATATGCATGGGT+CGG - chr3_4:29005326-29005345 None:intergenic 35.0%
CTAGCTAACCTTTGAATAAG+TGG + chr3_4:29005537-29005556 Msa0497030:intron 35.0%
TCACAACTCAATTTCAGTCA+AGG - chr3_4:29005627-29005646 None:intergenic 35.0%
! AGAAAGCATGTTTAACACTC+TGG + chr3_4:29005882-29005901 Msa0497030:intron 35.0%
CAGTAGAAGTCATTGAAAAC+AGG - chr3_4:29006068-29006087 None:intergenic 35.0%
ATGAATAGTTGTTGGAACGA+TGG + chr3_4:29006137-29006156 Msa0497030:intron 35.0%
TGAATAGTTGTTGGAACGAT+GGG + chr3_4:29006138-29006157 Msa0497030:intron 35.0%
GAACATAGTGAGGAAACTAT+TGG - chr3_4:29006400-29006419 None:intergenic 35.0%
TATACACTAGGATCAAACAG+AGG + chr3_4:29006768-29006787 Msa0497030:intron 35.0%
GGAAGGGGATAAAATAACTA+TGG - chr3_4:29007016-29007035 None:intergenic 35.0%
!! GAGCAATACGTTGATTTGAA+AGG - chr3_4:29007490-29007509 None:intergenic 35.0%
GGACCCTATTAATATTTGGT+TGG + chr3_4:29007940-29007959 Msa0497030:intron 35.0%
GTGTTGTCTGGTTAAATGAT+CGG + chr3_4:29008070-29008089 Msa0497030:three_prime_UTR 35.0%
AGGTTTGAATTTAGGCCCAA+TGG + chr3_4:29004683-29004702 Msa0497030:intron 40.0%
GGTTTGAATTTAGGCCCAAT+GGG + chr3_4:29004684-29004703 Msa0497030:intron 40.0%
GTTTGAATTTAGGCCCAATG+GGG + chr3_4:29004685-29004704 Msa0497030:intron 40.0%
AAGCTGAAATGCAAGTTGCT+AGG - chr3_4:29005140-29005159 None:intergenic 40.0%
CCCACTCATTCACCTTAAAA+AGG - chr3_4:29005285-29005304 None:intergenic 40.0%
CATAATATATGCATGGGTCG+GGG - chr3_4:29005324-29005343 None:intergenic 40.0%
GCATAATATATGCATGGGTC+GGG - chr3_4:29005325-29005344 None:intergenic 40.0%
CATAAGCGCCACTTATTCAA+AGG - chr3_4:29005548-29005567 None:intergenic 40.0%
ACAAAAGTTTACGAGGCCTT+AGG + chr3_4:29005584-29005603 Msa0497030:intron 40.0%
! TCAAGGTGTTTAACCAAGTG+TGG - chr3_4:29005610-29005629 None:intergenic 40.0%
TTACGAGTCATGTGTTTGTC+TGG + chr3_4:29005760-29005779 Msa0497030:intron 40.0%
AACTAACTCTGGCATAAGCT+TGG + chr3_4:29005961-29005980 Msa0497030:intron 40.0%
AAGTGATGAGAATGCTTCCA+AGG + chr3_4:29006215-29006234 Msa0497030:CDS 40.0%
AGTGATGAGAATGCTTCCAA+GGG + chr3_4:29006216-29006235 Msa0497030:CDS 40.0%
TTCAAAGTAAATGGGCCAGA+AGG - chr3_4:29006325-29006344 None:intergenic 40.0%
!! AAGATGGTTGGCTTGACAAT+GGG + chr3_4:29006691-29006710 Msa0497030:CDS 40.0%
AATACCTTTGCAAACTCTGC+TGG - chr3_4:29006729-29006748 None:intergenic 40.0%
GCACCCTTTCAAAAATTTCC+TGG - chr3_4:29006854-29006873 None:intergenic 40.0%
GCATTGAATCCATTTCTGAG+CGG - chr3_4:29007037-29007056 None:intergenic 40.0%
! AATGGATTCAATGCTGCAGT+TGG + chr3_4:29007043-29007062 Msa0497030:intron 40.0%
!! TGCGTATGTATTTTGGAGGA+GGG - chr3_4:29007229-29007248 None:intergenic 40.0%
!! ATGCGTATGTATTTTGGAGG+AGG - chr3_4:29007230-29007249 None:intergenic 40.0%
!! GACATGCGTATGTATTTTGG+AGG - chr3_4:29007233-29007252 None:intergenic 40.0%
! ACGGACATGCGTATGTATTT+TGG - chr3_4:29007236-29007255 None:intergenic 40.0%
AATACATACGCATGTCCGTT+TGG + chr3_4:29007237-29007256 Msa0497030:intron 40.0%
TTCTCATTCCTTCGACCAAA+CGG - chr3_4:29007255-29007274 None:intergenic 40.0%
TTTCTCTTCTCTCCTTAGCT+AGG + chr3_4:29007574-29007593 Msa0497030:intron 40.0%
CAATCCAAAAGACCTAGCTA+AGG - chr3_4:29007589-29007608 None:intergenic 40.0%
ACCTGTTAAGGAAAGCTTGT+AGG + chr3_4:29007748-29007767 Msa0497030:intron 40.0%
TCCTACAAGCTTTCCTTAAC+AGG - chr3_4:29007752-29007771 None:intergenic 40.0%
TATTTGGTTGGATGTCATGC+AGG + chr3_4:29007952-29007971 Msa0497030:intron 40.0%
! TTGAGCACTTAAGTGTTGTC+TGG + chr3_4:29008058-29008077 Msa0497030:three_prime_UTR 40.0%
CGATCAGCACACATATATGT+TGG - chr3_4:29008137-29008156 None:intergenic 40.0%
TACAGTAGCACCATCACTAG+CGG + chr3_4:29005159-29005178 Msa0497030:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG - chr3_4:29005353-29005372 None:intergenic 45.0%
TACCAACTGAGCTATGCTCA+CGG + chr3_4:29005353-29005372 Msa0497030:intron 45.0%
GTTTAACCAAGTGTGGCCTA+AGG - chr3_4:29005603-29005622 None:intergenic 45.0%
ACGAAGATTACACTTACGCC+TGG - chr3_4:29005680-29005699 None:intergenic 45.0%
AACGATGGGAAAAGACGCAA+AGG + chr3_4:29006152-29006171 Msa0497030:CDS 45.0%
GCAAAGGCAAAGGAGTCAAA+GGG + chr3_4:29006168-29006187 Msa0497030:CDS 45.0%
GCAAAGGAGTCAAAGGGTAA+GGG + chr3_4:29006174-29006193 Msa0497030:CDS 45.0%
GAGAATGCTTCCAAGGGAAA+AGG + chr3_4:29006222-29006241 Msa0497030:CDS 45.0%
GCTTCCAAGGGAAAAGGAAA+AGG + chr3_4:29006228-29006247 Msa0497030:CDS 45.0%
TCCAAGGGAAAAGGAAAAGG+TGG + chr3_4:29006231-29006250 Msa0497030:CDS 45.0%
CCAAGGGAAAAGGAAAAGGT+GGG + chr3_4:29006232-29006251 Msa0497030:CDS 45.0%
GGTACTTGCACCTATGTCAA+AGG + chr3_4:29006273-29006292 Msa0497030:intron 45.0%
!! CCAGAAGGTGCTTGTAAATG+GGG - chr3_4:29006310-29006329 None:intergenic 45.0%
!! GCCAGAAGGTGCTTGTAAAT+GGG - chr3_4:29006311-29006330 None:intergenic 45.0%
ACCATCTTGCAGCTTCTTGT+AGG - chr3_4:29006679-29006698 None:intergenic 45.0%
ACAAGAAGCTGCAAGATGGT+TGG + chr3_4:29006679-29006698 Msa0497030:CDS 45.0%
!! CAAGATGGTTGGCTTGACAA+TGG + chr3_4:29006690-29006709 Msa0497030:CDS 45.0%
!! AGATGGTTGGCTTGACAATG+GGG + chr3_4:29006692-29006711 Msa0497030:CDS 45.0%
AATCCATTTCTGAGCGGAAG+GGG - chr3_4:29007031-29007050 None:intergenic 45.0%
GAATCCATTTCTGAGCGGAA+GGG - chr3_4:29007032-29007051 None:intergenic 45.0%
TGAATCCATTTCTGAGCGGA+AGG - chr3_4:29007033-29007052 None:intergenic 45.0%
GCAGTCTTGAATTCAGCTGT+AGG + chr3_4:29007073-29007092 Msa0497030:intron 45.0%
GACCGTTGACGTGTATTTAC+TGG + chr3_4:29007182-29007201 Msa0497030:intron 45.0%
GGCCAGTAAATACACGTCAA+CGG - chr3_4:29007187-29007206 None:intergenic 45.0%
!! GTATGTATTTTGGAGGAGGG+GGG - chr3_4:29007226-29007245 None:intergenic 45.0%
!! CGTATGTATTTTGGAGGAGG+GGG - chr3_4:29007227-29007246 None:intergenic 45.0%
!! GCGTATGTATTTTGGAGGAG+GGG - chr3_4:29007228-29007247 None:intergenic 45.0%
TAATATTTCGCCGACCTCAC+AGG + chr3_4:29007336-29007355 Msa0497030:intron 45.0%
ATACTCTTGAGCTACCTGTG+AGG - chr3_4:29007353-29007372 None:intergenic 45.0%
GAGTATTCTGAATGCCCATC+AGG + chr3_4:29007367-29007386 Msa0497030:CDS 45.0%
TGAATGCCCATCAGGAAAGA+AGG + chr3_4:29007375-29007394 Msa0497030:CDS 45.0%
GAATGCCCATCAGGAAAGAA+GGG + chr3_4:29007376-29007395 Msa0497030:CDS 45.0%
ATGGTTTCCACGAGGAAAGA+TGG + chr3_4:29007411-29007430 Msa0497030:CDS 45.0%
TGAAGGCAACTTCCTGGAAT+GGG - chr3_4:29007441-29007460 None:intergenic 45.0%
TTGAAGGCAACTTCCTGGAA+TGG - chr3_4:29007442-29007461 None:intergenic 45.0%
AACTCCAACAGGTGTGTTGA+AGG - chr3_4:29007458-29007477 None:intergenic 45.0%
!! CGTTGATTTGAAAGGAGCAC+TGG - chr3_4:29007482-29007501 None:intergenic 45.0%
! CTCTCCTTAGCTAGGTCTTT+TGG + chr3_4:29007582-29007601 Msa0497030:intron 45.0%
AGAACGAAGCTGAGTTTCAG+TGG + chr3_4:29008032-29008051 Msa0497030:three_prime_UTR 45.0%
!! TATTATTAATAGATAATAAT+TGG + chr3_4:29005058-29005077 Msa0497030:intron 5.0%
!! ATAAATAATTTATAAAATCA+CGG + chr3_4:29005228-29005247 Msa0497030:intron 5.0%
ATGTGATTCCTCGTCTCGAC+TGG + chr3_4:29004728-29004747 Msa0497030:intron 50.0%
TATTCACACCAGTCGAGACG+AGG - chr3_4:29004739-29004758 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr3_4:29005354-29005373 None:intergenic 50.0%
ACCAACTGAGCTATGCTCAC+GGG + chr3_4:29005354-29005373 Msa0497030:intron 50.0%
GGGAAAAGACGCAAAGGCAA+AGG + chr3_4:29006158-29006177 Msa0497030:CDS 50.0%
CGCAAAGGCAAAGGAGTCAA+AGG + chr3_4:29006167-29006186 Msa0497030:CDS 50.0%
GGCAAAGGAGTCAAAGGGTA+AGG + chr3_4:29006173-29006192 Msa0497030:CDS 50.0%
GTCAAAGGGTAAGGGAAAGC+AGG + chr3_4:29006182-29006201 Msa0497030:CDS 50.0%
! CCCACCTTTTCCTTTTCCCT+TGG - chr3_4:29006235-29006254 None:intergenic 50.0%
AAAGGTGGGAAAGCTGCTGA+TGG + chr3_4:29006246-29006265 Msa0497030:CDS 50.0%
AAGGTGGGAAAGCTGCTGAT+GGG + chr3_4:29006247-29006266 Msa0497030:CDS 50.0%
CCCCATTTACAAGCACCTTC+TGG + chr3_4:29006307-29006326 Msa0497030:intron 50.0%
!! GGCCAGAAGGTGCTTGTAAA+TGG - chr3_4:29006312-29006331 None:intergenic 50.0%
GCCTACAAGAAGCTGCAAGA+TGG + chr3_4:29006675-29006694 Msa0497030:CDS 50.0%
TCCTCCAGCAGAGTTTGCAA+AGG + chr3_4:29006722-29006741 Msa0497030:CDS 50.0%
ACCTTTGCAAACTCTGCTGG+AGG - chr3_4:29006726-29006745 None:intergenic 50.0%
TATCCCCTTCCGCTCAGAAA+TGG + chr3_4:29007025-29007044 Msa0497030:intron 50.0%
GACGTGTATTTACTGGCCAC+AGG + chr3_4:29007189-29007208 Msa0497030:intron 50.0%
TCTTGAGCTACCTGTGAGGT+CGG - chr3_4:29007349-29007368 None:intergenic 50.0%
CTCCACCCTTCTTTCCTGAT+GGG - chr3_4:29007384-29007403 None:intergenic 50.0%
TCTCCACCCTTCTTTCCTGA+TGG - chr3_4:29007385-29007404 None:intergenic 50.0%
TTCCTCGTGGAAACCATCCA+AGG - chr3_4:29007408-29007427 None:intergenic 50.0%
TTTCCACGAGGAAAGATGGC+TGG + chr3_4:29007415-29007434 Msa0497030:CDS 50.0%
GTGTGTTGAAGGCAACTTCC+TGG - chr3_4:29007447-29007466 None:intergenic 50.0%
GTTGCCTTCAACACACCTGT+TGG + chr3_4:29007451-29007470 Msa0497030:CDS 50.0%
GTCTTGCTAACAAGTGCCCT+CGG + chr3_4:29007639-29007658 Msa0497030:intron 50.0%
TCTTGCTAACAAGTGCCCTC+GGG + chr3_4:29007640-29007659 Msa0497030:intron 50.0%
ATCCTTAAAGATGGCCCCGA+GGG - chr3_4:29007658-29007677 None:intergenic 50.0%
AATCCTTAAAGATGGCCCCG+AGG - chr3_4:29007659-29007678 None:intergenic 50.0%
CGTGTAGCAACAGCCCCATT+GGG - chr3_4:29004701-29004720 None:intergenic 55.0%
TCGTGTAGCAACAGCCCCAT+TGG - chr3_4:29004702-29004721 None:intergenic 55.0%
GGGGCTGTTGCTACACGAAA+TGG + chr3_4:29004704-29004723 Msa0497030:intron 55.0%
ACCATCACTAGCGGCTGCTA+CGG + chr3_4:29005168-29005187 Msa0497030:intron 55.0%
! AGGTGAATGAGTGGGGTGTC+TGG + chr3_4:29005290-29005309 Msa0497030:intron 55.0%
CCAACTGAGCTATGCTCACG+GGG + chr3_4:29005355-29005374 Msa0497030:intron 55.0%
AAGGGAAAGCAGGCTGCAAG+TGG + chr3_4:29006192-29006211 Msa0497030:CDS 55.0%
GGGGGAATCAGGATTTCCTG+TGG - chr3_4:29007208-29007227 None:intergenic 55.0%
!! TTTTGGAGGAGGGGGGAATC+AGG - chr3_4:29007219-29007238 None:intergenic 55.0%
ACGCATGTCCGTTTGGTCGA+AGG + chr3_4:29007244-29007263 Msa0497030:intron 55.0%
TGCCCATCAGGAAAGAAGGG+TGG + chr3_4:29007379-29007398 Msa0497030:CDS 55.0%
GGAAAGAAGGGTGGAGACCT+TGG + chr3_4:29007388-29007407 Msa0497030:CDS 55.0%
AGAAGGGTGGAGACCTTGGA+TGG + chr3_4:29007392-29007411 Msa0497030:CDS 55.0%
GACCTTGGATGGTTTCCACG+AGG + chr3_4:29007403-29007422 Msa0497030:CDS 55.0%
! AAAGATGGCTGGCCCATTCC+AGG + chr3_4:29007426-29007445 Msa0497030:CDS 55.0%
!! GGAGCACTGGTAACTCCAAC+AGG - chr3_4:29007469-29007488 None:intergenic 55.0%
CTTGCTAACAAGTGCCCTCG+GGG + chr3_4:29007641-29007660 Msa0497030:intron 55.0%
GGTTGGATGTCATGCAGGCA+TGG + chr3_4:29007957-29007976 Msa0497030:intron 55.0%
ACCGTAGCAGCCGCTAGTGA+TGG - chr3_4:29005172-29005191 None:intergenic 60.0%
CCCCGTGAGCATAGCTCAGT+TGG - chr3_4:29005358-29005377 None:intergenic 60.0%
ACGAGGCCTTAGGCCACACT+TGG + chr3_4:29005594-29005613 Msa0497030:intron 60.0%
!! GGGAAAGCTGCTGATGGGCT+TGG + chr3_4:29006252-29006271 Msa0497030:CDS 60.0%
TGCCCTCGGGGCCATCTTTA+AGG + chr3_4:29007653-29007672 Msa0497030:intron 60.0%
GGGCCAGCCATCTTTCCTCG+TGG - chr3_4:29007421-29007440 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 29004678 29008244 29004678 ID=Msa0497030;Name=Msa0497030
chr3_4 mRNA 29004678 29008244 29004678 ID=Msa0497030-mRNA-1;Parent=Msa0497030;Name=Msa0497030-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.5|0.6|1|0.25|0.4|5|228|143
chr3_4 exon 29004678 29004684 29004678 ID=Msa0497030-mRNA-1:exon:6679;Parent=Msa0497030-mRNA-1
chr3_4 exon 29006145 29006273 29006145 ID=Msa0497030-mRNA-1:exon:6680;Parent=Msa0497030-mRNA-1
chr3_4 exon 29006634 29006743 29006634 ID=Msa0497030-mRNA-1:exon:6681;Parent=Msa0497030-mRNA-1
chr3_4 exon 29007358 29007500 29007358 ID=Msa0497030-mRNA-1:exon:6682;Parent=Msa0497030-mRNA-1
chr3_4 exon 29007974 29008244 29007974 ID=Msa0497030-mRNA-1:exon:6683;Parent=Msa0497030-mRNA-1
chr3_4 CDS 29004678 29004684 29004678 ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1
chr3_4 CDS 29006145 29006273 29006145 ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1
chr3_4 CDS 29006634 29006743 29006634 ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1
chr3_4 CDS 29007358 29007500 29007358 ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1
chr3_4 CDS 29007974 29008016 29007974 ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1
chr3_4 three_prime_UTR 29008017 29008244 29008017 ID=Msa0497030-mRNA-1:three_prime_utr;Parent=Msa0497030-mRNA-1
Gene Sequence

>Msa0497030

ATGAAAGTTGTTGGAACGATGGGAAAAGACGCAAAGGCAAAGGAGTCAAAGGGTAAGGGAAAGCAGGCTGCAAGTGGAAGTGATGAGAATGCTTCCAAGGGAAAAGGAAAAGGTGGGAAAGCTGCTGATGGGCTTGCAAGACATATCTTATGTGAGAAACAAGGTAAGATTAATGAAGCCTACAAGAAGCTGCAAGATGGTTGGCTTGACAATGGGGATAAAGTTCCTCCAGCAGAGTTTGCAAAGGTAGCTCAAGAGTATTCTGAATGCCCATCAGGAAAGAAGGGTGGAGACCTTGGATGGTTTCCACGAGGAAAGATGGCTGGCCCATTCCAGGAAGTTGCCTTCAACACACCTGTTGGAGTTACCAGTGCTCCTTTCAAATCAACGCATGGCTACCATATTATCTTATCTGAAGGAAGAAAGAACTGA

Protein sequence

>Msa0497030

MKVVGTMGKDAKAKESKGKGKQAASGSDENASKGKGKGGKAADGLARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILSEGRKN*