Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497030 | XP_024633746.1 | 95.139 | 144 | 0 | 1 | 7 | 143 | 1 | 144 | 3.82e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497030 | sp|A6QPY8|PIN4_BOVIN | 46.721 | 122 | 46 | 4 | 27 | 142 | 23 | 131 | 3.58e-25 | 96.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497030 | B7FMQ2 | 95.139 | 144 | 0 | 1 | 7 | 143 | 1 | 144 | 1.82e-91 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041620 | Msa0497030 | 0.807015 | 6.211559e-50 | -8.615850e-47 |
| Msa0061970 | Msa0497030 | 0.803704 | 3.070817e-49 | -8.615850e-47 |
| Msa0073670 | Msa0497030 | 0.822488 | 2.306472e-53 | -8.615850e-47 |
| Msa0094920 | Msa0497030 | 0.800395 | 1.470540e-48 | -8.615850e-47 |
| Msa0094950 | Msa0497030 | 0.822724 | 2.032477e-53 | -8.615850e-47 |
| Msa0149390 | Msa0497030 | 0.803814 | 2.913079e-49 | -8.615850e-47 |
| Msa0167480 | Msa0497030 | 0.802817 | 4.686576e-49 | -8.615850e-47 |
| Msa0186890 | Msa0497030 | 0.833065 | 6.603519e-56 | -8.615850e-47 |
| Msa0187930 | Msa0497030 | 0.804349 | 2.254851e-49 | -8.615850e-47 |
| Msa0194540 | Msa0497030 | 0.814801 | 1.280455e-51 | -8.615850e-47 |
| Msa0227400 | Msa0497030 | 0.803036 | 4.222181e-49 | -8.615850e-47 |
| Msa0376690 | Msa0497030 | 0.802072 | 6.673833e-49 | -8.615850e-47 |
| Msa0378980 | Msa0497030 | 0.806205 | 9.212073e-50 | -8.615850e-47 |
| Msa0392940 | Msa0497030 | 0.832401 | 9.655187e-56 | -8.615850e-47 |
| Msa0402330 | Msa0497030 | 0.807531 | 4.830631e-50 | -8.615850e-47 |
| Msa0403190 | Msa0497030 | 0.818791 | 1.630404e-52 | -8.615850e-47 |
| Msa0413450 | Msa0497030 | 0.801153 | 1.029699e-48 | -8.615850e-47 |
| Msa0416400 | Msa0497030 | 0.842673 | 2.239879e-58 | -8.615850e-47 |
| Msa0449820 | Msa0497030 | 0.832034 | 1.189930e-55 | -8.615850e-47 |
| Msa0471590 | Msa0497030 | 0.800856 | 1.184094e-48 | -8.615850e-47 |
| Msa0242680 | Msa0497030 | 0.819535 | 1.103709e-52 | -8.615850e-47 |
| Msa0260240 | Msa0497030 | 0.826127 | 3.216239e-54 | -8.615850e-47 |
| Msa0260280 | Msa0497030 | 0.830730 | 2.491183e-55 | -8.615850e-47 |
| Msa0268130 | Msa0497030 | 0.801942 | 7.094542e-49 | -8.615850e-47 |
| Msa0291520 | Msa0497030 | 0.811630 | 6.360660e-51 | -8.615850e-47 |
| Msa0304260 | Msa0497030 | 0.826103 | 3.259821e-54 | -8.615850e-47 |
| Msa0304300 | Msa0497030 | 0.825920 | 3.602727e-54 | -8.615850e-47 |
| Msa0304330 | Msa0497030 | 0.800150 | 1.649111e-48 | -8.615850e-47 |
| Msa0304590 | Msa0497030 | 0.803775 | 2.968025e-49 | -8.615850e-47 |
| Msa0304660 | Msa0497030 | 0.800220 | 1.596415e-48 | -8.615850e-47 |
| Msa0331700 | Msa0497030 | 0.804397 | 2.203220e-49 | -8.615850e-47 |
| Msa0355270 | Msa0497030 | 0.816696 | 4.840670e-52 | -8.615850e-47 |
| Msa0497030 | Msa0513440 | 0.804232 | 2.384097e-49 | -8.615850e-47 |
| Msa0497030 | Msa0541860 | 0.829858 | 4.067685e-55 | -8.615850e-47 |
| Msa0497030 | Msa0552810 | 0.804517 | 2.079573e-49 | -8.615850e-47 |
| Msa0497030 | Msa0561430 | 0.807846 | 4.140674e-50 | -8.615850e-47 |
| Msa0497030 | Msa0571920 | 0.806983 | 6.310487e-50 | -8.615850e-47 |
| Msa0497030 | Msa0619070 | 0.808237 | 3.418140e-50 | -8.615850e-47 |
| Msa0497030 | Msa0654870 | 0.809789 | 1.590871e-50 | -8.615850e-47 |
| Msa0497030 | Msa0677770 | 0.809334 | 1.992026e-50 | -8.615850e-47 |
| Msa0497030 | Msa0687630 | 0.831447 | 1.661143e-55 | -8.615850e-47 |
| Msa0497030 | Msa0692080 | 0.801383 | 9.242718e-49 | -8.615850e-47 |
| Msa0497030 | Msa0703230 | 0.832395 | 9.690391e-56 | -8.615850e-47 |
| Msa0497030 | Msa0718740 | 0.804136 | 2.496715e-49 | -8.615850e-47 |
| Msa0497030 | Msa0735310 | 0.829256 | 5.699358e-55 | -8.615850e-47 |
| Msa0497030 | Msa0750920 | 0.815570 | 8.638232e-52 | -8.615850e-47 |
| Msa0497030 | Msa0778320 | 0.811278 | 7.585398e-51 | -8.615850e-47 |
| Msa0497030 | Msa0787750 | 0.805454 | 1.324627e-49 | -8.615850e-47 |
| Msa0497030 | Msa0797750 | 0.806960 | 6.380619e-50 | -8.615850e-47 |
| Msa0497030 | Msa0814250 | 0.800830 | 1.199078e-48 | -8.615850e-47 |
| Msa0497030 | Msa0814320 | 0.826227 | 3.045893e-54 | -8.615850e-47 |
| Msa0497030 | Msa0824640 | 0.828686 | 7.829852e-55 | -8.615850e-47 |
| Msa0497030 | Msa0864010 | 0.824991 | 5.978927e-54 | -8.615850e-47 |
| Msa0497030 | Msa0937670 | 0.803105 | 4.085380e-49 | -8.615850e-47 |
| Msa0497030 | Msa1083880 | 0.809008 | 2.339725e-50 | -8.615850e-47 |
| Msa0497030 | Msa1176980 | 0.814552 | 1.453399e-51 | -8.615850e-47 |
| Msa0497030 | Msa1179980 | 0.800265 | 1.562874e-48 | -8.615850e-47 |
| Msa0497030 | Msa1184370 | 0.804047 | 2.605925e-49 | -8.615850e-47 |
| Msa0497030 | Msa1201830 | 0.807653 | 4.549923e-50 | -8.615850e-47 |
| Msa0497030 | Msa1227690 | 0.832879 | 7.348912e-56 | -8.615850e-47 |
| Msa0497030 | Msa1234980 | 0.802612 | 5.164193e-49 | -8.615850e-47 |
| Msa0497030 | Msa1254710 | 0.817602 | 3.028153e-52 | -8.615850e-47 |
| Msa0497030 | Msa1294840 | 0.810643 | 1.041078e-50 | -8.615850e-47 |
| Msa0497030 | Msa1306990 | 0.807120 | 5.901778e-50 | -8.615850e-47 |
| Msa0497030 | Msa1307950 | 0.804648 | 1.952590e-49 | -8.615850e-47 |
| Msa0497030 | Msa1310690 | 0.830635 | 2.627621e-55 | -8.615850e-47 |
| Msa0497030 | Msa1335940 | 0.809782 | 1.595844e-50 | -8.615850e-47 |
| Msa0497030 | Msa1344850 | 0.812071 | 5.097875e-51 | -8.615850e-47 |
| Msa0497030 | Msa1365150 | 0.812932 | 3.305842e-51 | -8.615850e-47 |
| Msa0497030 | Msa1367880 | 0.801206 | 1.004481e-48 | -8.615850e-47 |
| Msa0497030 | Msa1373330 | 0.828299 | 9.709297e-55 | -8.615850e-47 |
| Msa0497030 | Msa1397050 | 0.815963 | 7.062657e-52 | -8.615850e-47 |
| Msa0497030 | Msa1404190 | 0.834033 | 3.785957e-56 | -8.615850e-47 |
| Msa0497030 | Msa1423910 | 0.801317 | 9.534684e-49 | -8.615850e-47 |
| Msa0497030 | Msa1438640 | 0.821429 | 4.057652e-53 | -8.615850e-47 |
| Msa0497030 | Msa1442850 | 0.825239 | 5.223563e-54 | -8.615850e-47 |
| Msa0497030 | Msa1461490 | 0.802109 | 6.555629e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497030 | MtrunA17_Chr3g0091791 | 95.139 | 144 | 0 | 1 | 7 | 143 | 1 | 144 | 3.51e-95 | 271 |
| Msa0497030 | MtrunA17_Chr8g0372081 | 45.763 | 59 | 32 | 0 | 78 | 136 | 60 | 118 | 7.07e-12 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0497030 | AT1G26550.1 | 87.402 | 127 | 9 | 1 | 24 | 143 | 16 | 142 | 1.54e-70 | 209 |
Find 61 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAGATAAGATAATA+TGG | 0.306070 | 3_4:-29007983 | None:intergenic |
| AAAGATGGCTGGCCCATTCC+AGG | 0.336869 | 3_4:+29007426 | Msa0497030:CDS |
| GTGTGTTGAAGGCAACTTCC+TGG | 0.343784 | 3_4:-29007444 | None:intergenic |
| ACCATCTTGCAGCTTCTTGT+AGG | 0.370602 | 3_4:-29006676 | None:intergenic |
| TTGAGCACTTAAGTGTTGTC+TGG | 0.425999 | 3_4:+29008058 | Msa0497030:three_prime_UTR |
| AATACCTTTGCAAACTCTGC+TGG | 0.438727 | 3_4:-29006726 | None:intergenic |
| GAGTATTCTGAATGCCCATC+AGG | 0.445595 | 3_4:+29007367 | Msa0497030:CDS |
| TCTCCACCCTTCTTTCCTGA+TGG | 0.455060 | 3_4:-29007382 | None:intergenic |
| CTCCACCCTTCTTTCCTGAT+GGG | 0.462426 | 3_4:-29007381 | None:intergenic |
| GGGAAAGCTGCTGATGGGCT+TGG | 0.479109 | 3_4:+29006252 | Msa0497030:CDS |
| GGAGCACTGGTAACTCCAAC+AGG | 0.481302 | 3_4:-29007466 | None:intergenic |
| TCAGTTATCTAAGTATTAGA+AGG | 0.482130 | 3_4:-29008159 | None:intergenic |
| CGCAAAGGCAAAGGAGTCAA+AGG | 0.482750 | 3_4:+29006167 | Msa0497030:CDS |
| GGCAAAGGAGTCAAAGGGTA+AGG | 0.483433 | 3_4:+29006173 | Msa0497030:CDS |
| GGAAAGAAGGGTGGAGACCT+TGG | 0.487014 | 3_4:+29007388 | Msa0497030:CDS |
| GTCAAAGGGTAAGGGAAAGC+AGG | 0.489595 | 3_4:+29006182 | Msa0497030:CDS |
| GAGAATGCTTCCAAGGGAAA+AGG | 0.493127 | 3_4:+29006222 | Msa0497030:CDS |
| TGAATGCCCATCAGGAAAGA+AGG | 0.494243 | 3_4:+29007375 | Msa0497030:CDS |
| ATGGTTTCCACGAGGAAAGA+TGG | 0.495254 | 3_4:+29007411 | Msa0497030:CDS |
| TGAAGGCAACTTCCTGGAAT+GGG | 0.503879 | 3_4:-29007438 | None:intergenic |
| AACTCCAACAGGTGTGTTGA+AGG | 0.504286 | 3_4:-29007455 | None:intergenic |
| AAGATGGTTGGCTTGACAAT+GGG | 0.509183 | 3_4:+29006691 | Msa0497030:CDS |
| CGTTGATTTGAAAGGAGCAC+TGG | 0.509492 | 3_4:-29007479 | None:intergenic |
| AAAGGTGGGAAAGCTGCTGA+TGG | 0.525616 | 3_4:+29006246 | Msa0497030:CDS |
| GAGCAATACGTTGATTTGAA+AGG | 0.530210 | 3_4:-29007487 | None:intergenic |
| GTGTTGTCTGGTTAAATGAT+CGG | 0.534992 | 3_4:+29008070 | Msa0497030:three_prime_UTR |
| CGATCAGCACACATATATGT+TGG | 0.537728 | 3_4:-29008134 | None:intergenic |
| TTGAAGGCAACTTCCTGGAA+TGG | 0.541346 | 3_4:-29007439 | None:intergenic |
| GCTTCCAAGGGAAAAGGAAA+AGG | 0.563501 | 3_4:+29006228 | Msa0497030:CDS |
| AAGTGATGAGAATGCTTCCA+AGG | 0.564213 | 3_4:+29006215 | Msa0497030:CDS |
| TGAATAGTTGTTGGAACGAT+GGG | 0.564254 | 3_4:+29006138 | Msa0497030:intron |
| AGAAGGGTGGAGACCTTGGA+TGG | 0.573215 | 3_4:+29007392 | Msa0497030:CDS |
| TCCAAGGGAAAAGGAAAAGG+TGG | 0.576313 | 3_4:+29006231 | Msa0497030:CDS |
| GTTGCCTTCAACACACCTGT+TGG | 0.577492 | 3_4:+29007451 | Msa0497030:CDS |
| AGCAACCCTAAGAACATGAA+AGG | 0.580108 | 3_4:+29004663 | None:intergenic |
| TACCATATTATCTTATCTGA+AGG | 0.583293 | 3_4:+29007981 | Msa0497030:CDS |
| GCAAAGGCAAAGGAGTCAAA+GGG | 0.585236 | 3_4:+29006168 | Msa0497030:CDS |
| AAGGGAAAGCAGGCTGCAAG+TGG | 0.585506 | 3_4:+29006192 | Msa0497030:CDS |
| CAAGATGGTTGGCTTGACAA+TGG | 0.586005 | 3_4:+29006690 | Msa0497030:CDS |
| ACAAGAAGCTGCAAGATGGT+TGG | 0.586477 | 3_4:+29006679 | Msa0497030:CDS |
| TTTCCACGAGGAAAGATGGC+TGG | 0.587993 | 3_4:+29007415 | Msa0497030:CDS |
| GGGAAAAGACGCAAAGGCAA+AGG | 0.594129 | 3_4:+29006158 | Msa0497030:CDS |
| ATAATATATGTGAATGTGGA+TGG | 0.596312 | 3_4:+29008184 | Msa0497030:three_prime_UTR |
| GAATGCCCATCAGGAAAGAA+GGG | 0.596490 | 3_4:+29007376 | Msa0497030:CDS |
| ATGAATAGTTGTTGGAACGA+TGG | 0.598127 | 3_4:+29006137 | Msa0497030:intron |
| GCCTACAAGAAGCTGCAAGA+TGG | 0.599336 | 3_4:+29006675 | Msa0497030:CDS |
| TTCCTCGTGGAAACCATCCA+AGG | 0.602870 | 3_4:-29007405 | None:intergenic |
| AAGGTGGGAAAGCTGCTGAT+GGG | 0.609652 | 3_4:+29006247 | Msa0497030:CDS |
| ACCTTTGCAAACTCTGCTGG+AGG | 0.617263 | 3_4:-29006723 | None:intergenic |
| AGAACGAAGCTGAGTTTCAG+TGG | 0.620184 | 3_4:+29008032 | Msa0497030:three_prime_UTR |
| TCCTCCAGCAGAGTTTGCAA+AGG | 0.623533 | 3_4:+29006722 | Msa0497030:CDS |
| GAGCATAATATATGTGAATG+TGG | 0.625216 | 3_4:+29008180 | Msa0497030:three_prime_UTR |
| GCAAAGGAGTCAAAGGGTAA+GGG | 0.629245 | 3_4:+29006174 | Msa0497030:CDS |
| CATATCTTATGTGAGAAACA+AGG | 0.634519 | 3_4:+29006639 | Msa0497030:CDS |
| AACGATGGGAAAAGACGCAA+AGG | 0.635307 | 3_4:+29006152 | Msa0497030:CDS |
| AGTGATGAGAATGCTTCCAA+GGG | 0.642736 | 3_4:+29006216 | Msa0497030:CDS |
| TGCCCATCAGGAAAGAAGGG+TGG | 0.643391 | 3_4:+29007379 | Msa0497030:CDS |
| CCAAGGGAAAAGGAAAAGGT+GGG | 0.647496 | 3_4:+29006232 | Msa0497030:CDS |
| GGGCCAGCCATCTTTCCTCG+TGG | 0.659422 | 3_4:-29007418 | None:intergenic |
| AGATGGTTGGCTTGACAATG+GGG | 0.681394 | 3_4:+29006692 | Msa0497030:CDS |
| GACCTTGGATGGTTTCCACG+AGG | 0.719867 | 3_4:+29007403 | Msa0497030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATTTATAAAATCAC+GGG | + | chr3_4:29005229-29005248 | Msa0497030:intron | 10.0% |
| !!! | TCAAAAATATATTGAAATTT+TGG | + | chr3_4:29006432-29006451 | Msa0497030:intron | 10.0% |
| !! | TAACTAATCAATCAAATATA+GGG | - | chr3_4:29004987-29005006 | None:intergenic | 15.0% |
| !!! | ATTAGTTAGCTTATAATTAT+GGG | + | chr3_4:29004999-29005018 | Msa0497030:intron | 15.0% |
| !!! | TTTTAAAAGCAAATTTGAAA+CGG | - | chr3_4:29005199-29005218 | None:intergenic | 15.0% |
| !!! | TCAAATTTGCTTTTAAAAAT+CGG | + | chr3_4:29005201-29005220 | Msa0497030:intron | 15.0% |
| !!! | AAGGTATTTTTCATTTATTT+TGG | + | chr3_4:29006741-29006760 | Msa0497030:intron | 15.0% |
| !!! | ATATTTTGATATCAACAAAT+CGG | - | chr3_4:29007139-29007158 | None:intergenic | 15.0% |
| !! | GAAAATATGTGTATTTAATT+TGG | - | chr3_4:29007682-29007701 | None:intergenic | 15.0% |
| !! | CTAACTAATCAATCAAATAT+AGG | - | chr3_4:29004988-29005007 | None:intergenic | 20.0% |
| !!! | GATTAGTTAGCTTATAATTA+TGG | + | chr3_4:29004998-29005017 | Msa0497030:intron | 20.0% |
| !! | ATCCTTATTGTTCATTTATA+TGG | + | chr3_4:29005382-29005401 | Msa0497030:intron | 20.0% |
| !! | ATCCATATAAATGAACAATA+AGG | - | chr3_4:29005387-29005406 | None:intergenic | 20.0% |
| !! | AGAAAACATTCAAAGTAAAT+GGG | - | chr3_4:29006333-29006352 | None:intergenic | 20.0% |
| !! | ACTTCAACTAATAAACATAA+GGG | + | chr3_4:29006365-29006384 | Msa0497030:intron | 20.0% |
| !! | TCAAAGAAACTTATCATATA+CGG | - | chr3_4:29006564-29006583 | None:intergenic | 20.0% |
| !!! | TTTGAATTTACATTGATTTC+TGG | + | chr3_4:29006595-29006614 | Msa0497030:intron | 20.0% |
| !! | TTAAATAGAAAGCCAAATAA+GGG | - | chr3_4:29006952-29006971 | None:intergenic | 20.0% |
| !! | TTTAAATAGAAAGCCAAATA+AGG | - | chr3_4:29006953-29006972 | None:intergenic | 20.0% |
| !!! | ATTTTCATAATTACCTGTTA+AGG | + | chr3_4:29007736-29007755 | Msa0497030:intron | 20.0% |
| ! | TAGAGATTGAAATTCAACTT+GGG | - | chr3_4:29004950-29004969 | None:intergenic | 25.0% |
| ! | TTAGCTTATAATTATGGGTT+GGG | + | chr3_4:29005004-29005023 | Msa0497030:intron | 25.0% |
| ! | AAAAAGGACTAAATCATCTA+AGG | - | chr3_4:29005269-29005288 | None:intergenic | 25.0% |
| !! | AGATGATTTAGTCCTTTTTA+AGG | + | chr3_4:29005270-29005289 | Msa0497030:intron | 25.0% |
| ! | ACATTGCATAATATATGCAT+GGG | - | chr3_4:29005330-29005349 | None:intergenic | 25.0% |
| ! | AATAAATCAGAAACTAACTC+TGG | + | chr3_4:29005950-29005969 | Msa0497030:intron | 25.0% |
| ! | AATTTCTTCATCTTCTATGT+TGG | - | chr3_4:29006039-29006058 | None:intergenic | 25.0% |
| ! | TTGATATGATGAATAGTTGT+TGG | + | chr3_4:29006129-29006148 | Msa0497030:intron | 25.0% |
| ! | AAAATTTGTACCTTTGACAT+AGG | - | chr3_4:29006286-29006305 | None:intergenic | 25.0% |
| ! | CAGAAAACATTCAAAGTAAA+TGG | - | chr3_4:29006334-29006353 | None:intergenic | 25.0% |
| ! | CACTTCAACTAATAAACATA+AGG | + | chr3_4:29006364-29006383 | Msa0497030:intron | 25.0% |
| !!! | ATGCTTTTAGAAAGTAAACA+AGG | + | chr3_4:29006529-29006548 | Msa0497030:intron | 25.0% |
| !!! | TATTTTGGAAGTTATACACT+AGG | + | chr3_4:29006756-29006775 | Msa0497030:intron | 25.0% |
| !! | TTGGCTTTCTATTTAAAATG+AGG | + | chr3_4:29006956-29006975 | Msa0497030:intron | 25.0% |
| ! | GAAACTTATTATGTGGTAAA+TGG | + | chr3_4:29006983-29007002 | Msa0497030:intron | 25.0% |
| !! | TAATTTGGAATCCTTAAAGA+TGG | - | chr3_4:29007667-29007686 | None:intergenic | 25.0% |
| ! | AATATGTGTATTCAATGCAT+TGG | - | chr3_4:29007719-29007738 | None:intergenic | 25.0% |
| !! | GCTGATAACTTGTATAAAAA+TGG | + | chr3_4:29007831-29007850 | Msa0497030:intron | 25.0% |
| ! | TATAAGTTGTTTATCCAAAC+AGG | + | chr3_4:29007919-29007938 | Msa0497030:intron | 25.0% |
| ! | CATCCAACCAAATATTAATA+GGG | - | chr3_4:29007946-29007965 | None:intergenic | 25.0% |
| ! | ACATCCAACCAAATATTAAT+AGG | - | chr3_4:29007947-29007966 | None:intergenic | 25.0% |
| ! | TACCATATTATCTTATCTGA+AGG | + | chr3_4:29007981-29008000 | Msa0497030:CDS | 25.0% |
| ! | TTCCTTCAGATAAGATAATA+TGG | - | chr3_4:29007986-29008005 | None:intergenic | 25.0% |
| ! | TCAGTTATCTAAGTATTAGA+AGG | - | chr3_4:29008162-29008181 | None:intergenic | 25.0% |
| ! | ATAATATATGTGAATGTGGA+TGG | + | chr3_4:29008184-29008203 | Msa0497030:three_prime_UTR | 25.0% |
| AAATTCAGGAAGAACAATCA+AGG | - | chr3_4:29004783-29004802 | None:intergenic | 30.0% | |
| TTCTATTCATTTGTGCTTAG+AGG | + | chr3_4:29004819-29004838 | Msa0497030:intron | 30.0% | |
| CTAGAGATTGAAATTCAACT+TGG | - | chr3_4:29004951-29004970 | None:intergenic | 30.0% | |
| ! | CAAGTTGAATTTCAATCTCT+AGG | + | chr3_4:29004949-29004968 | Msa0497030:intron | 30.0% |
| ! | GTTAGCTTATAATTATGGGT+TGG | + | chr3_4:29005003-29005022 | Msa0497030:intron | 30.0% |
| GACATTGCATAATATATGCA+TGG | - | chr3_4:29005331-29005350 | None:intergenic | 30.0% | |
| TCTTTCTGTCAAACAAATAC+TGG | + | chr3_4:29005422-29005441 | Msa0497030:intron | 30.0% | |
| TCATTGAACAAAAGTTTACG+AGG | + | chr3_4:29005577-29005596 | Msa0497030:intron | 30.0% | |
| !!! | TTACTGATTTTGCATTTTCC+AGG | + | chr3_4:29005659-29005678 | Msa0497030:intron | 30.0% |
| ATAGATGTTGCTAGTCATTT+CGG | + | chr3_4:29005729-29005748 | Msa0497030:intron | 30.0% | |
| !!! | TCTATATGAGCTTGTTTTGT+TGG | + | chr3_4:29005811-29005830 | Msa0497030:intron | 30.0% |
| !!! | CTATATGAGCTTGTTTTGTT+GGG | + | chr3_4:29005812-29005831 | Msa0497030:intron | 30.0% |
| TTATCTCTACAGATATCAGA+TGG | + | chr3_4:29005838-29005857 | Msa0497030:intron | 30.0% | |
| AGATTACAATCAGAATCAGT+TGG | - | chr3_4:29005928-29005947 | None:intergenic | 30.0% | |
| TTGGACATTGTTAGATGATT+AGG | - | chr3_4:29005992-29006011 | None:intergenic | 30.0% | |
| TATCACACATCAGATTACAT+TGG | - | chr3_4:29006011-29006030 | None:intergenic | 30.0% | |
| ATCGTAAAAAGAACATAGTG+AGG | - | chr3_4:29006410-29006429 | None:intergenic | 30.0% | |
| CATATCTTATGTGAGAAACA+AGG | + | chr3_4:29006639-29006658 | Msa0497030:CDS | 30.0% | |
| GTAACAAATGTATAGCACTA+CGG | - | chr3_4:29006799-29006818 | None:intergenic | 30.0% | |
| ! | AAAAAGAGAGTATAATTGCC+AGG | + | chr3_4:29006833-29006852 | Msa0497030:intron | 30.0% |
| ! | ATTGCCAGGAAATTTTTGAA+AGG | + | chr3_4:29006847-29006866 | Msa0497030:intron | 30.0% |
| !! | TTGCCAGGAAATTTTTGAAA+GGG | + | chr3_4:29006848-29006867 | Msa0497030:intron | 30.0% |
| GTATACACTAAACCCTTATT+TGG | + | chr3_4:29006937-29006956 | Msa0497030:intron | 30.0% | |
| AGGCTAAGAAACTTATTATG+TGG | + | chr3_4:29006976-29006995 | Msa0497030:intron | 30.0% | |
| GCATATAATAGCAACTAGAA+GGG | - | chr3_4:29007518-29007537 | None:intergenic | 30.0% | |
| TGCATATAATAGCAACTAGA+AGG | - | chr3_4:29007519-29007538 | None:intergenic | 30.0% | |
| !! | CTTATTTTCTTATGTTCTCG+AGG | + | chr3_4:29007791-29007810 | Msa0497030:intron | 30.0% |
| AATATTAATAGGGTCCTGTT+TGG | - | chr3_4:29007936-29007955 | None:intergenic | 30.0% | |
| AACAGGACCCTATTAATATT+TGG | + | chr3_4:29007936-29007955 | Msa0497030:intron | 30.0% | |
| !! | GCTTTTTCTTTATGTGATTG+TGG | + | chr3_4:29008098-29008117 | Msa0497030:three_prime_UTR | 30.0% |
| GAGCATAATATATGTGAATG+TGG | + | chr3_4:29008180-29008199 | Msa0497030:three_prime_UTR | 30.0% | |
| GTTGCAGAGTTTAGAAATTC+AGG | - | chr3_4:29004797-29004816 | None:intergenic | 35.0% | |
| TCAACTTGGGTATCAGAAAA+TGG | - | chr3_4:29004937-29004956 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTAAGGTGAATGAG+TGG | + | chr3_4:29005281-29005300 | Msa0497030:intron | 35.0% |
| !!! | CCTTTTTAAGGTGAATGAGT+GGG | + | chr3_4:29005282-29005301 | Msa0497030:intron | 35.0% |
| !!! | CTTTTTAAGGTGAATGAGTG+GGG | + | chr3_4:29005283-29005302 | Msa0497030:intron | 35.0% |
| TGCATAATATATGCATGGGT+CGG | - | chr3_4:29005326-29005345 | None:intergenic | 35.0% | |
| CTAGCTAACCTTTGAATAAG+TGG | + | chr3_4:29005537-29005556 | Msa0497030:intron | 35.0% | |
| TCACAACTCAATTTCAGTCA+AGG | - | chr3_4:29005627-29005646 | None:intergenic | 35.0% | |
| ! | AGAAAGCATGTTTAACACTC+TGG | + | chr3_4:29005882-29005901 | Msa0497030:intron | 35.0% |
| CAGTAGAAGTCATTGAAAAC+AGG | - | chr3_4:29006068-29006087 | None:intergenic | 35.0% | |
| ATGAATAGTTGTTGGAACGA+TGG | + | chr3_4:29006137-29006156 | Msa0497030:intron | 35.0% | |
| TGAATAGTTGTTGGAACGAT+GGG | + | chr3_4:29006138-29006157 | Msa0497030:intron | 35.0% | |
| GAACATAGTGAGGAAACTAT+TGG | - | chr3_4:29006400-29006419 | None:intergenic | 35.0% | |
| TATACACTAGGATCAAACAG+AGG | + | chr3_4:29006768-29006787 | Msa0497030:intron | 35.0% | |
| GGAAGGGGATAAAATAACTA+TGG | - | chr3_4:29007016-29007035 | None:intergenic | 35.0% | |
| !! | GAGCAATACGTTGATTTGAA+AGG | - | chr3_4:29007490-29007509 | None:intergenic | 35.0% |
| GGACCCTATTAATATTTGGT+TGG | + | chr3_4:29007940-29007959 | Msa0497030:intron | 35.0% | |
| GTGTTGTCTGGTTAAATGAT+CGG | + | chr3_4:29008070-29008089 | Msa0497030:three_prime_UTR | 35.0% | |
| AGGTTTGAATTTAGGCCCAA+TGG | + | chr3_4:29004683-29004702 | Msa0497030:intron | 40.0% | |
| GGTTTGAATTTAGGCCCAAT+GGG | + | chr3_4:29004684-29004703 | Msa0497030:intron | 40.0% | |
| GTTTGAATTTAGGCCCAATG+GGG | + | chr3_4:29004685-29004704 | Msa0497030:intron | 40.0% | |
| AAGCTGAAATGCAAGTTGCT+AGG | - | chr3_4:29005140-29005159 | None:intergenic | 40.0% | |
| CCCACTCATTCACCTTAAAA+AGG | - | chr3_4:29005285-29005304 | None:intergenic | 40.0% | |
| CATAATATATGCATGGGTCG+GGG | - | chr3_4:29005324-29005343 | None:intergenic | 40.0% | |
| GCATAATATATGCATGGGTC+GGG | - | chr3_4:29005325-29005344 | None:intergenic | 40.0% | |
| CATAAGCGCCACTTATTCAA+AGG | - | chr3_4:29005548-29005567 | None:intergenic | 40.0% | |
| ACAAAAGTTTACGAGGCCTT+AGG | + | chr3_4:29005584-29005603 | Msa0497030:intron | 40.0% | |
| ! | TCAAGGTGTTTAACCAAGTG+TGG | - | chr3_4:29005610-29005629 | None:intergenic | 40.0% |
| TTACGAGTCATGTGTTTGTC+TGG | + | chr3_4:29005760-29005779 | Msa0497030:intron | 40.0% | |
| AACTAACTCTGGCATAAGCT+TGG | + | chr3_4:29005961-29005980 | Msa0497030:intron | 40.0% | |
| AAGTGATGAGAATGCTTCCA+AGG | + | chr3_4:29006215-29006234 | Msa0497030:CDS | 40.0% | |
| AGTGATGAGAATGCTTCCAA+GGG | + | chr3_4:29006216-29006235 | Msa0497030:CDS | 40.0% | |
| TTCAAAGTAAATGGGCCAGA+AGG | - | chr3_4:29006325-29006344 | None:intergenic | 40.0% | |
| !! | AAGATGGTTGGCTTGACAAT+GGG | + | chr3_4:29006691-29006710 | Msa0497030:CDS | 40.0% |
| AATACCTTTGCAAACTCTGC+TGG | - | chr3_4:29006729-29006748 | None:intergenic | 40.0% | |
| GCACCCTTTCAAAAATTTCC+TGG | - | chr3_4:29006854-29006873 | None:intergenic | 40.0% | |
| GCATTGAATCCATTTCTGAG+CGG | - | chr3_4:29007037-29007056 | None:intergenic | 40.0% | |
| ! | AATGGATTCAATGCTGCAGT+TGG | + | chr3_4:29007043-29007062 | Msa0497030:intron | 40.0% |
| !! | TGCGTATGTATTTTGGAGGA+GGG | - | chr3_4:29007229-29007248 | None:intergenic | 40.0% |
| !! | ATGCGTATGTATTTTGGAGG+AGG | - | chr3_4:29007230-29007249 | None:intergenic | 40.0% |
| !! | GACATGCGTATGTATTTTGG+AGG | - | chr3_4:29007233-29007252 | None:intergenic | 40.0% |
| ! | ACGGACATGCGTATGTATTT+TGG | - | chr3_4:29007236-29007255 | None:intergenic | 40.0% |
| AATACATACGCATGTCCGTT+TGG | + | chr3_4:29007237-29007256 | Msa0497030:intron | 40.0% | |
| TTCTCATTCCTTCGACCAAA+CGG | - | chr3_4:29007255-29007274 | None:intergenic | 40.0% | |
| TTTCTCTTCTCTCCTTAGCT+AGG | + | chr3_4:29007574-29007593 | Msa0497030:intron | 40.0% | |
| CAATCCAAAAGACCTAGCTA+AGG | - | chr3_4:29007589-29007608 | None:intergenic | 40.0% | |
| ACCTGTTAAGGAAAGCTTGT+AGG | + | chr3_4:29007748-29007767 | Msa0497030:intron | 40.0% | |
| TCCTACAAGCTTTCCTTAAC+AGG | - | chr3_4:29007752-29007771 | None:intergenic | 40.0% | |
| TATTTGGTTGGATGTCATGC+AGG | + | chr3_4:29007952-29007971 | Msa0497030:intron | 40.0% | |
| ! | TTGAGCACTTAAGTGTTGTC+TGG | + | chr3_4:29008058-29008077 | Msa0497030:three_prime_UTR | 40.0% |
| CGATCAGCACACATATATGT+TGG | - | chr3_4:29008137-29008156 | None:intergenic | 40.0% | |
| TACAGTAGCACCATCACTAG+CGG | + | chr3_4:29005159-29005178 | Msa0497030:intron | 45.0% | |
| ! | TGAGCATAGCTCAGTTGGTA+GGG | - | chr3_4:29005353-29005372 | None:intergenic | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | + | chr3_4:29005353-29005372 | Msa0497030:intron | 45.0% | |
| GTTTAACCAAGTGTGGCCTA+AGG | - | chr3_4:29005603-29005622 | None:intergenic | 45.0% | |
| ACGAAGATTACACTTACGCC+TGG | - | chr3_4:29005680-29005699 | None:intergenic | 45.0% | |
| AACGATGGGAAAAGACGCAA+AGG | + | chr3_4:29006152-29006171 | Msa0497030:CDS | 45.0% | |
| GCAAAGGCAAAGGAGTCAAA+GGG | + | chr3_4:29006168-29006187 | Msa0497030:CDS | 45.0% | |
| GCAAAGGAGTCAAAGGGTAA+GGG | + | chr3_4:29006174-29006193 | Msa0497030:CDS | 45.0% | |
| GAGAATGCTTCCAAGGGAAA+AGG | + | chr3_4:29006222-29006241 | Msa0497030:CDS | 45.0% | |
| GCTTCCAAGGGAAAAGGAAA+AGG | + | chr3_4:29006228-29006247 | Msa0497030:CDS | 45.0% | |
| TCCAAGGGAAAAGGAAAAGG+TGG | + | chr3_4:29006231-29006250 | Msa0497030:CDS | 45.0% | |
| CCAAGGGAAAAGGAAAAGGT+GGG | + | chr3_4:29006232-29006251 | Msa0497030:CDS | 45.0% | |
| GGTACTTGCACCTATGTCAA+AGG | + | chr3_4:29006273-29006292 | Msa0497030:intron | 45.0% | |
| !! | CCAGAAGGTGCTTGTAAATG+GGG | - | chr3_4:29006310-29006329 | None:intergenic | 45.0% |
| !! | GCCAGAAGGTGCTTGTAAAT+GGG | - | chr3_4:29006311-29006330 | None:intergenic | 45.0% |
| ACCATCTTGCAGCTTCTTGT+AGG | - | chr3_4:29006679-29006698 | None:intergenic | 45.0% | |
| ACAAGAAGCTGCAAGATGGT+TGG | + | chr3_4:29006679-29006698 | Msa0497030:CDS | 45.0% | |
| !! | CAAGATGGTTGGCTTGACAA+TGG | + | chr3_4:29006690-29006709 | Msa0497030:CDS | 45.0% |
| !! | AGATGGTTGGCTTGACAATG+GGG | + | chr3_4:29006692-29006711 | Msa0497030:CDS | 45.0% |
| AATCCATTTCTGAGCGGAAG+GGG | - | chr3_4:29007031-29007050 | None:intergenic | 45.0% | |
| GAATCCATTTCTGAGCGGAA+GGG | - | chr3_4:29007032-29007051 | None:intergenic | 45.0% | |
| TGAATCCATTTCTGAGCGGA+AGG | - | chr3_4:29007033-29007052 | None:intergenic | 45.0% | |
| GCAGTCTTGAATTCAGCTGT+AGG | + | chr3_4:29007073-29007092 | Msa0497030:intron | 45.0% | |
| GACCGTTGACGTGTATTTAC+TGG | + | chr3_4:29007182-29007201 | Msa0497030:intron | 45.0% | |
| GGCCAGTAAATACACGTCAA+CGG | - | chr3_4:29007187-29007206 | None:intergenic | 45.0% | |
| !! | GTATGTATTTTGGAGGAGGG+GGG | - | chr3_4:29007226-29007245 | None:intergenic | 45.0% |
| !! | CGTATGTATTTTGGAGGAGG+GGG | - | chr3_4:29007227-29007246 | None:intergenic | 45.0% |
| !! | GCGTATGTATTTTGGAGGAG+GGG | - | chr3_4:29007228-29007247 | None:intergenic | 45.0% |
| TAATATTTCGCCGACCTCAC+AGG | + | chr3_4:29007336-29007355 | Msa0497030:intron | 45.0% | |
| ATACTCTTGAGCTACCTGTG+AGG | - | chr3_4:29007353-29007372 | None:intergenic | 45.0% | |
| GAGTATTCTGAATGCCCATC+AGG | + | chr3_4:29007367-29007386 | Msa0497030:CDS | 45.0% | |
| TGAATGCCCATCAGGAAAGA+AGG | + | chr3_4:29007375-29007394 | Msa0497030:CDS | 45.0% | |
| GAATGCCCATCAGGAAAGAA+GGG | + | chr3_4:29007376-29007395 | Msa0497030:CDS | 45.0% | |
| ATGGTTTCCACGAGGAAAGA+TGG | + | chr3_4:29007411-29007430 | Msa0497030:CDS | 45.0% | |
| TGAAGGCAACTTCCTGGAAT+GGG | - | chr3_4:29007441-29007460 | None:intergenic | 45.0% | |
| TTGAAGGCAACTTCCTGGAA+TGG | - | chr3_4:29007442-29007461 | None:intergenic | 45.0% | |
| AACTCCAACAGGTGTGTTGA+AGG | - | chr3_4:29007458-29007477 | None:intergenic | 45.0% | |
| !! | CGTTGATTTGAAAGGAGCAC+TGG | - | chr3_4:29007482-29007501 | None:intergenic | 45.0% |
| ! | CTCTCCTTAGCTAGGTCTTT+TGG | + | chr3_4:29007582-29007601 | Msa0497030:intron | 45.0% |
| AGAACGAAGCTGAGTTTCAG+TGG | + | chr3_4:29008032-29008051 | Msa0497030:three_prime_UTR | 45.0% | |
| !! | TATTATTAATAGATAATAAT+TGG | + | chr3_4:29005058-29005077 | Msa0497030:intron | 5.0% |
| !! | ATAAATAATTTATAAAATCA+CGG | + | chr3_4:29005228-29005247 | Msa0497030:intron | 5.0% |
| ATGTGATTCCTCGTCTCGAC+TGG | + | chr3_4:29004728-29004747 | Msa0497030:intron | 50.0% | |
| TATTCACACCAGTCGAGACG+AGG | - | chr3_4:29004739-29004758 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | - | chr3_4:29005354-29005373 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | + | chr3_4:29005354-29005373 | Msa0497030:intron | 50.0% | |
| GGGAAAAGACGCAAAGGCAA+AGG | + | chr3_4:29006158-29006177 | Msa0497030:CDS | 50.0% | |
| CGCAAAGGCAAAGGAGTCAA+AGG | + | chr3_4:29006167-29006186 | Msa0497030:CDS | 50.0% | |
| GGCAAAGGAGTCAAAGGGTA+AGG | + | chr3_4:29006173-29006192 | Msa0497030:CDS | 50.0% | |
| GTCAAAGGGTAAGGGAAAGC+AGG | + | chr3_4:29006182-29006201 | Msa0497030:CDS | 50.0% | |
| ! | CCCACCTTTTCCTTTTCCCT+TGG | - | chr3_4:29006235-29006254 | None:intergenic | 50.0% |
| AAAGGTGGGAAAGCTGCTGA+TGG | + | chr3_4:29006246-29006265 | Msa0497030:CDS | 50.0% | |
| AAGGTGGGAAAGCTGCTGAT+GGG | + | chr3_4:29006247-29006266 | Msa0497030:CDS | 50.0% | |
| CCCCATTTACAAGCACCTTC+TGG | + | chr3_4:29006307-29006326 | Msa0497030:intron | 50.0% | |
| !! | GGCCAGAAGGTGCTTGTAAA+TGG | - | chr3_4:29006312-29006331 | None:intergenic | 50.0% |
| GCCTACAAGAAGCTGCAAGA+TGG | + | chr3_4:29006675-29006694 | Msa0497030:CDS | 50.0% | |
| TCCTCCAGCAGAGTTTGCAA+AGG | + | chr3_4:29006722-29006741 | Msa0497030:CDS | 50.0% | |
| ACCTTTGCAAACTCTGCTGG+AGG | - | chr3_4:29006726-29006745 | None:intergenic | 50.0% | |
| TATCCCCTTCCGCTCAGAAA+TGG | + | chr3_4:29007025-29007044 | Msa0497030:intron | 50.0% | |
| GACGTGTATTTACTGGCCAC+AGG | + | chr3_4:29007189-29007208 | Msa0497030:intron | 50.0% | |
| TCTTGAGCTACCTGTGAGGT+CGG | - | chr3_4:29007349-29007368 | None:intergenic | 50.0% | |
| CTCCACCCTTCTTTCCTGAT+GGG | - | chr3_4:29007384-29007403 | None:intergenic | 50.0% | |
| TCTCCACCCTTCTTTCCTGA+TGG | - | chr3_4:29007385-29007404 | None:intergenic | 50.0% | |
| TTCCTCGTGGAAACCATCCA+AGG | - | chr3_4:29007408-29007427 | None:intergenic | 50.0% | |
| TTTCCACGAGGAAAGATGGC+TGG | + | chr3_4:29007415-29007434 | Msa0497030:CDS | 50.0% | |
| GTGTGTTGAAGGCAACTTCC+TGG | - | chr3_4:29007447-29007466 | None:intergenic | 50.0% | |
| GTTGCCTTCAACACACCTGT+TGG | + | chr3_4:29007451-29007470 | Msa0497030:CDS | 50.0% | |
| GTCTTGCTAACAAGTGCCCT+CGG | + | chr3_4:29007639-29007658 | Msa0497030:intron | 50.0% | |
| TCTTGCTAACAAGTGCCCTC+GGG | + | chr3_4:29007640-29007659 | Msa0497030:intron | 50.0% | |
| ATCCTTAAAGATGGCCCCGA+GGG | - | chr3_4:29007658-29007677 | None:intergenic | 50.0% | |
| AATCCTTAAAGATGGCCCCG+AGG | - | chr3_4:29007659-29007678 | None:intergenic | 50.0% | |
| CGTGTAGCAACAGCCCCATT+GGG | - | chr3_4:29004701-29004720 | None:intergenic | 55.0% | |
| TCGTGTAGCAACAGCCCCAT+TGG | - | chr3_4:29004702-29004721 | None:intergenic | 55.0% | |
| GGGGCTGTTGCTACACGAAA+TGG | + | chr3_4:29004704-29004723 | Msa0497030:intron | 55.0% | |
| ACCATCACTAGCGGCTGCTA+CGG | + | chr3_4:29005168-29005187 | Msa0497030:intron | 55.0% | |
| ! | AGGTGAATGAGTGGGGTGTC+TGG | + | chr3_4:29005290-29005309 | Msa0497030:intron | 55.0% |
| CCAACTGAGCTATGCTCACG+GGG | + | chr3_4:29005355-29005374 | Msa0497030:intron | 55.0% | |
| AAGGGAAAGCAGGCTGCAAG+TGG | + | chr3_4:29006192-29006211 | Msa0497030:CDS | 55.0% | |
| GGGGGAATCAGGATTTCCTG+TGG | - | chr3_4:29007208-29007227 | None:intergenic | 55.0% | |
| !! | TTTTGGAGGAGGGGGGAATC+AGG | - | chr3_4:29007219-29007238 | None:intergenic | 55.0% |
| ACGCATGTCCGTTTGGTCGA+AGG | + | chr3_4:29007244-29007263 | Msa0497030:intron | 55.0% | |
| TGCCCATCAGGAAAGAAGGG+TGG | + | chr3_4:29007379-29007398 | Msa0497030:CDS | 55.0% | |
| GGAAAGAAGGGTGGAGACCT+TGG | + | chr3_4:29007388-29007407 | Msa0497030:CDS | 55.0% | |
| AGAAGGGTGGAGACCTTGGA+TGG | + | chr3_4:29007392-29007411 | Msa0497030:CDS | 55.0% | |
| GACCTTGGATGGTTTCCACG+AGG | + | chr3_4:29007403-29007422 | Msa0497030:CDS | 55.0% | |
| ! | AAAGATGGCTGGCCCATTCC+AGG | + | chr3_4:29007426-29007445 | Msa0497030:CDS | 55.0% |
| !! | GGAGCACTGGTAACTCCAAC+AGG | - | chr3_4:29007469-29007488 | None:intergenic | 55.0% |
| CTTGCTAACAAGTGCCCTCG+GGG | + | chr3_4:29007641-29007660 | Msa0497030:intron | 55.0% | |
| GGTTGGATGTCATGCAGGCA+TGG | + | chr3_4:29007957-29007976 | Msa0497030:intron | 55.0% | |
| ACCGTAGCAGCCGCTAGTGA+TGG | - | chr3_4:29005172-29005191 | None:intergenic | 60.0% | |
| CCCCGTGAGCATAGCTCAGT+TGG | - | chr3_4:29005358-29005377 | None:intergenic | 60.0% | |
| ACGAGGCCTTAGGCCACACT+TGG | + | chr3_4:29005594-29005613 | Msa0497030:intron | 60.0% | |
| !! | GGGAAAGCTGCTGATGGGCT+TGG | + | chr3_4:29006252-29006271 | Msa0497030:CDS | 60.0% |
| TGCCCTCGGGGCCATCTTTA+AGG | + | chr3_4:29007653-29007672 | Msa0497030:intron | 60.0% | |
| GGGCCAGCCATCTTTCCTCG+TGG | - | chr3_4:29007421-29007440 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 29004678 | 29008244 | 29004678 | ID=Msa0497030;Name=Msa0497030 |
| chr3_4 | mRNA | 29004678 | 29008244 | 29004678 | ID=Msa0497030-mRNA-1;Parent=Msa0497030;Name=Msa0497030-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.5|0.6|1|0.25|0.4|5|228|143 |
| chr3_4 | exon | 29004678 | 29004684 | 29004678 | ID=Msa0497030-mRNA-1:exon:6679;Parent=Msa0497030-mRNA-1 |
| chr3_4 | exon | 29006145 | 29006273 | 29006145 | ID=Msa0497030-mRNA-1:exon:6680;Parent=Msa0497030-mRNA-1 |
| chr3_4 | exon | 29006634 | 29006743 | 29006634 | ID=Msa0497030-mRNA-1:exon:6681;Parent=Msa0497030-mRNA-1 |
| chr3_4 | exon | 29007358 | 29007500 | 29007358 | ID=Msa0497030-mRNA-1:exon:6682;Parent=Msa0497030-mRNA-1 |
| chr3_4 | exon | 29007974 | 29008244 | 29007974 | ID=Msa0497030-mRNA-1:exon:6683;Parent=Msa0497030-mRNA-1 |
| chr3_4 | CDS | 29004678 | 29004684 | 29004678 | ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1 |
| chr3_4 | CDS | 29006145 | 29006273 | 29006145 | ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1 |
| chr3_4 | CDS | 29006634 | 29006743 | 29006634 | ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1 |
| chr3_4 | CDS | 29007358 | 29007500 | 29007358 | ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1 |
| chr3_4 | CDS | 29007974 | 29008016 | 29007974 | ID=Msa0497030-mRNA-1:cds;Parent=Msa0497030-mRNA-1 |
| chr3_4 | three_prime_UTR | 29008017 | 29008244 | 29008017 | ID=Msa0497030-mRNA-1:three_prime_utr;Parent=Msa0497030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
