AlfalfaGEDB | Msa0786740

M. sativa cultivar zhongmu-4 / Msa0786740

KEGG: K03352
GO: -
PFAM: PF12862.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786740	sp\|Q8H1U4\|APC5_ARATH	62.555	916	309	6	1	888	1	910	0.0	1086

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786740	G7K3C1	94.794	922	23	2	1	897	1	922	0.0	1772

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0786740	0.841675	4.114418e-58	-8.615850e-47
Msa0030070	Msa0786740	0.816534	5.262949e-52	-8.615850e-47
Msa0045620	Msa0786740	0.803802	2.930000e-49	-8.615850e-47
Msa0050530	Msa0786740	0.848485	5.946989e-60	-8.615850e-47
Msa0089540	Msa0786740	0.801199	1.007587e-48	-8.615850e-47
Msa0100600	Msa0786740	0.831692	1.445259e-55	-8.615850e-47
Msa0100890	Msa0786740	0.850008	2.241135e-60	-8.615850e-47
Msa0109730	Msa0786740	0.810956	8.907448e-51	-8.615850e-47
Msa0125590	Msa0786740	0.825059	5.763080e-54	-8.615850e-47
Msa0152190	Msa0786740	-0.802095	6.600274e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786740	MtrunA17_Chr5g0442821	94.794	922	23	2	1	897	1	922	0.0	1772
Msa0786740	MtrunA17_Chr5g0442791	60.274	73	24	1	661	733	7	74	1.31e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786740	AT1G06590.1	62.555	916	309	6	1	888	1	910	0.0	1086

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Find 181 sgRNAs with CRISPR-Local

Find 781 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGTTTCTTCGTATGG+AGG	0.578782	5_2:+72286643	None:intergenic
AAACTTACTCGATGCAGTTC+AGG	0.424047	5_2:+72285916	None:intergenic
AAAGGAACGGAAACTTGACC+TGG	0.622958	5_2:+72288221	None:intergenic
AAATTGCTTTATTATGTTTG+GGG	0.609522	5_2:-72284546	Msa0786740:CDS
AACTTGGGCAATTAGAGGAA+AGG	0.550820	5_2:-72276126	Msa0786740:CDS
AAGTTCATCACACAGTTTCT+GGG	0.437398	5_2:+72279294	None:intergenic
AATGGCATCTCAAGCACTGC+TGG	0.409205	5_2:-72284001	Msa0786740:CDS
AATGGCGAAGTTTGATTTAA+CGG	0.376800	5_2:-72283834	Msa0786740:intron
AATTCTTGGTCATGGAGGTT+TGG	0.413839	5_2:-72277779	Msa0786740:CDS
ACAGATCCAGGAATTGATGT+TGG	0.553520	5_2:+72281473	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATTAGTGATGAAATCGA+CGG	+	chr5_2:72276170-72276189	None:intergenic	30.0%
TTCAATGAAATCACATGTGT+GGG	-	chr5_2:72276431-72276450	Msa0786740:intron	30.0%
AATTAGTGAAATGTTGGAGA+AGG	-	chr5_2:72277066-72277085	Msa0786740:intron	30.0%
TGTTGGGAACATGTTATTAA+TGG	+	chr5_2:72277464-72277483	None:intergenic	30.0%
AGAAGAAATTGAAGCAAGAA+AGG	-	chr5_2:72277762-72277781	Msa0786740:CDS	30.0%
TTAGGTGTATGAAGATGAAA+CGG	+	chr5_2:72277805-72277824	None:intergenic	30.0%
GTTTAGTAGATGGTATAAAC+GGG	-	chr5_2:72277836-72277855	Msa0786740:CDS	30.0%
CAGAGTGATAAATTAAGAGT+AGG	-	chr5_2:72278079-72278098	Msa0786740:intron	30.0%
TTCAAACCCATTCAAAGAAA+CGG	+	chr5_2:72278335-72278354	None:intergenic	30.0%
ATCATTATCTTTCAAGGGAA+GGG	+	chr5_2:72278924-72278943	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	72275993	72288330	72275993	ID=Msa0786740;Name=Msa0786740
chr5_2	mRNA	72275993	72288330	72275993	ID=Msa0786740-mRNA-1;Parent=Msa0786740;Name=Msa0786740-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0\|0.78\|0.8\|1\|0.89\|0.95\|20\|46\|897
chr5_2	exon	72275993	72276200	72275993	ID=Msa0786740-mRNA-1:exon:21963;Parent=Msa0786740-mRNA-1
chr5_2	exon	72277193	72277260	72277193	ID=Msa0786740-mRNA-1:exon:21962;Parent=Msa0786740-mRNA-1
chr5_2	exon	72277716	72277980	72277716	ID=Msa0786740-mRNA-1:exon:21961;Parent=Msa0786740-mRNA-1
chr5_2	exon	72278482	72278580	72278482	ID=Msa0786740-mRNA-1:exon:21960;Parent=Msa0786740-mRNA-1
chr5_2	exon	72279192	72279333	72279192	ID=Msa0786740-mRNA-1:exon:21959;Parent=Msa0786740-mRNA-1
chr5_2	exon	72279430	72279535	72279430	ID=Msa0786740-mRNA-1:exon:21958;Parent=Msa0786740-mRNA-1
chr5_2	exon	72279732	72279772	72279732	ID=Msa0786740-mRNA-1:exon:21957;Parent=Msa0786740-mRNA-1
chr5_2	exon	72280141	72280200	72280141	ID=Msa0786740-mRNA-1:exon:21956;Parent=Msa0786740-mRNA-1
chr5_2	exon	72281413	72281675	72281413	ID=Msa0786740-mRNA-1:exon:21955;Parent=Msa0786740-mRNA-1
chr5_2	exon	72281774	72281851	72281774	ID=Msa0786740-mRNA-1:exon:21954;Parent=Msa0786740-mRNA-1
chr5_2	exon	72283835	72284083	72283835	ID=Msa0786740-mRNA-1:exon:21953;Parent=Msa0786740-mRNA-1
chr5_2	exon	72284322	72284354	72284322	ID=Msa0786740-mRNA-1:exon:21952;Parent=Msa0786740-mRNA-1
chr5_2	exon	72284504	72284630	72284504	ID=Msa0786740-mRNA-1:exon:21951;Parent=Msa0786740-mRNA-1
chr5_2	exon	72285741	72285826	72285741	ID=Msa0786740-mRNA-1:exon:21950;Parent=Msa0786740-mRNA-1
chr5_2	exon	72285924	72286002	72285924	ID=Msa0786740-mRNA-1:exon:21949;Parent=Msa0786740-mRNA-1
chr5_2	exon	72286099	72286276	72286099	ID=Msa0786740-mRNA-1:exon:21948;Parent=Msa0786740-mRNA-1
chr5_2	exon	72286476	72286725	72286476	ID=Msa0786740-mRNA-1:exon:21947;Parent=Msa0786740-mRNA-1
chr5_2	exon	72287314	72287435	72287314	ID=Msa0786740-mRNA-1:exon:21946;Parent=Msa0786740-mRNA-1
chr5_2	exon	72287564	72287726	72287564	ID=Msa0786740-mRNA-1:exon:21945;Parent=Msa0786740-mRNA-1
chr5_2	exon	72288208	72288330	72288208	ID=Msa0786740-mRNA-1:exon:21944;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72288208	72288330	72288208	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72287564	72287726	72287564	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72287314	72287435	72287314	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72286476	72286725	72286476	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72286099	72286276	72286099	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72285924	72286002	72285924	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72285741	72285826	72285741	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72284504	72284630	72284504	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72284322	72284354	72284322	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72283835	72284083	72283835	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72281774	72281851	72281774	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72281413	72281675	72281413	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72280141	72280200	72280141	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72279732	72279772	72279732	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72279430	72279535	72279430	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72279192	72279333	72279192	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72278482	72278580	72278482	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72277716	72277980	72277716	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72277193	72277260	72277193	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	CDS	72276039	72276200	72276039	ID=Msa0786740-mRNA-1:cds;Parent=Msa0786740-mRNA-1
chr5_2	three_prime_UTR	72275993	72276038	72275993	ID=Msa0786740-mRNA-1:three_prime_utr;Parent=Msa0786740-mRNA-1

Gene Sequence

>Msa0786740

ATGGCTGTGATGTTGAAACAACCAGGTGCATTTACGATAACTCCACACAAAGTATCGCTCTGTATACTCCTCAAGATCTACGCTCCTCCAGGTCAAGTTTCCGTTCCTTTTCCGTTCGAATCTTCATGTGATGATATTTTGGAGCCAAAATTGGAAGAACTCATTAGTCAATTGAGATTGATAAGCCAAAACTGGGAAGCAACTTGGCTAATTGATCAGTTGATTAGTAGACTGTCATGTCTCTCATCACCCGATGATTTGTTTAATTTTTTCACCGATATACGAGGAATAATTGGAGGTCCCGATTCAGGTGATATCGAAGCTGATCAGGTTATTTTGGATGCGAACAGTAATTTGGGGATATTTCTTCGACGTTGTATACTTGCTTTCAATTTGCTACCGTTTGAGGGTGTATGCCGTCTCTTAACAAACATAGGGATCTATTGTAAAGAAGAATTCTCAAGTATTCCTCCATACGAAGAAACTAGTTTAGATGGTTCTAGTAGTAATCCCGAGACGTATTCAGAATACGAGAACATGGACTTGGAGAACTTTTTCTATGATAAGGTTTCAGAAGAAATTGAAGCAAGAAAGGAGGCCAGTGGAAGAGTTCCGTTTCATCTTCATACACCTAATGCACTTCTGAGTTTAGTAGATGATATTGATGTGCCTGCTGATTCAGTATCCAAACAGAGTGATAAATTAAGAGTAGGTAGTCCATATGAAGACCGCCAAAGTAACATGGTACGGGATATTGATCCCAGTGGTGCAGTATTTTTGCGCACAAACTGGCAGATACAAGGCTACTTACAAGAACATGCTGATACAATTGAAAAAAATGGTAGTGCCGTTTCTTTGAATGGGTTTGAAATTGTTCTGCGACAGCTACAGAAATTGGCACCTGAACTGCATCGAGTTCACTTTTTGAGCTACTTGAATGCTCTTTCTCATGATGATTATACTGCTGCTTTGGAAAATCTTCATTGCTATTTTGATTACAGTGCAGGGAAAGAAGGATTTGATTTTGTTCCTCCGGCTGGTAATAATAGCTCTGGAACATATGAAATTGCTTTATTATGTTTGGGGATGATGCATTTCCACTTTGGGCATCCAAAGCTGGCTTTGGAGGTTTTGACTGAAGCAGTTCGTGTTTCTCAGCAGCACAGTAACGATACCAATCTTGCATATACTTTAGCAGCTATCTCAAACTTGCTGTTTGAAAATGGCATCTCAAGCACTGCTGGGATACTAGGATCATCATATTCACCGTTTACTAGTATGGGTATTTCACTCTCTGTTCAGCAACAATTGTTTGTTCTCTTGAGAGGTTCTTTGAAGAGAGCAGAAAATTTAAAGCTAAAGCGGTTGTTGGCTTCCAATCATTTGGCAATGGCGAAGTTTGATTTAACGCATGTTCAAAGGCCCTTGTTATCATTTGGTCCAAAATCTTCCATGAAGCTCAGTACATGCCCAGTTAACGTTTCCAAGGAACTCAGGTTGAGTTCTCATTTGATTAGTGATTTTAGCTCTGAGAGTTCTGCAATGACAATTGATGGTGCCTTCAGTACAGCTTGGCTCAGGAATTTACAAAAGCCAAATGGTTCAAATATTTTCTGTCAGGATTCTGGATCTGGCAACAGTTCTAATATTCCCCAGTTCTGTGCCCAACCAACATCAATTCCTGGATCTGTTTTGCAAGTACTGGGATCATCTTATATACTTCGTGCAACAGCTTGGGAGTTATATGGCAGCACTCCTATGTCTCGCATAAATGCGCTAGTGCATGCAACTTGCTTTGCTGATGCATCAAGATGCAGCATTAGCATATGTAAAGCTCATTCAACATTTAGCAAGGCCTTTTCTGCCCTTAAAATAGCAGAAGAGAAGTTTCTATCTGTCTCAAAATCACAAATCATACTACTAAAGCTGCAGCTGCTTCATGAGCATGCTTTACACGGCGGATGTTTAAAGCTGGCCCAGAAACTGTGTGATGAACTTGGTGCTTTGGCATCACCTGTTACTGGTGTAGATATGGAGATAAAGACAGAAGCAAGCCTTCGCCATGCCCGTACCTTGCTCGCAGCAAAGCAATTCCGAGAGGCAGCTTCTGTGGCACACTCCCTCTTTTGCATGTGTTACAAATACAATCTGCAAGTTCAGAATGCATCTGTTCTTCTTTTGCTTGCTGAGATTCATAAGAAATCTGGCAATGCGGTTTTAGGGATACCATATGCTTTAGCAAGCCTTTCATTCTGCATATCATTTAACTTGGATCTTCTAAAAGCCTCAGCTACTCTTACTTTAGCTGAGCTATGGCTCTCTCTTGGATCAAGCCATGCCACACGGGCACTGAACCTTGTCCATGGAGCTTTTCCGATAATTCTTGGTCATGGAGGTTTGGAGCTCCGCTCACGGGCCTATATCGTTGAAGCAAAATGCTATCTATGTGATACAAATTTCAATGTTGGTGAAGATTACAATCTTGTGATAGATTCATTAAAACAAGCTTCTGAAGAACTCCAACCTTTGGAGTTTCATGAATTGGCGGCTGAAGCATTCTACCTGATGGCCATGGTCTATGACAAACTTGGGCAATTAGAGGAAAGGGAAGAAGCTGCAACTTCATTTCAGAAACATATATTGGCTCTTAACAATCTTCAAGATCATGATGATCCTCTTGTTAGTATATATTGA

Protein sequence

>Msa0786740

MAVMLKQPGAFTITPHKVSLCILLKIYAPPGQVSVPFPFESSCDDILEPKLEELISQLRLISQNWEATWLIDQLISRLSCLSSPDDLFNFFTDIRGIIGGPDSGDIEADQVILDANSNLGIFLRRCILAFNLLPFEGVCRLLTNIGIYCKEEFSSIPPYEETSLDGSSSNPETYSEYENMDLENFFYDKVSEEIEARKEASGRVPFHLHTPNALLSLVDDIDVPADSVSKQSDKLRVGSPYEDRQSNMVRDIDPSGAVFLRTNWQIQGYLQEHADTIEKNGSAVSLNGFEIVLRQLQKLAPELHRVHFLSYLNALSHDDYTAALENLHCYFDYSAGKEGFDFVPPAGNNSSGTYEIALLCLGMMHFHFGHPKLALEVLTEAVRVSQQHSNDTNLAYTLAAISNLLFENGISSTAGILGSSYSPFTSMGISLSVQQQLFVLLRGSLKRAENLKLKRLLASNHLAMAKFDLTHVQRPLLSFGPKSSMKLSTCPVNVSKELRLSSHLISDFSSESSAMTIDGAFSTAWLRNLQKPNGSNIFCQDSGSGNSSNIPQFCAQPTSIPGSVLQVLGSSYILRATAWELYGSTPMSRINALVHATCFADASRCSISICKAHSTFSKAFSALKIAEEKFLSVSKSQIILLKLQLLHEHALHGGCLKLAQKLCDELGALASPVTGVDMEIKTEASLRHARTLLAAKQFREAASVAHSLFCMCYKYNLQVQNASVLLLLAEIHKKSGNAVLGIPYALASLSFCISFNLDLLKASATLTLAELWLSLGSSHATRALNLVHGAFPIILGHGGLELRSRAYIVEAKCYLCDTNFNVGEDYNLVIDSLKQASEELQPLEFHELAAEAFYLMAMVYDKLGQLEEREEAATSFQKHILALNNLQDHDDPLVSIY*