Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790520 | XP_003592890.2 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790520 | sp|Q96282|CLCC_ARATH | 74.935 | 766 | 175 | 6 | 9 | 766 | 23 | 779 | 0.0 | 1129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790520 | A0A396J3P4 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa0790520 | 0.807468 | 4.981782e-50 | -8.615850e-47 |
| Msa0026120 | Msa0790520 | 0.804815 | 1.802149e-49 | -8.615850e-47 |
| Msa0046020 | Msa0790520 | 0.802456 | 5.563295e-49 | -8.615850e-47 |
| Msa0049670 | Msa0790520 | 0.805788 | 1.127289e-49 | -8.615850e-47 |
| Msa0056220 | Msa0790520 | 0.806580 | 7.676655e-50 | -8.615850e-47 |
| Msa0056230 | Msa0790520 | 0.804235 | 2.380923e-49 | -8.615850e-47 |
| Msa0057270 | Msa0790520 | 0.804418 | 2.180912e-49 | -8.615850e-47 |
| Msa0104900 | Msa0790520 | 0.801346 | 9.404265e-49 | -8.615850e-47 |
| Msa0112800 | Msa0790520 | 0.800337 | 1.510771e-48 | -8.615850e-47 |
| Msa0622400 | Msa0790520 | 0.809151 | 2.179790e-50 | -8.615850e-47 |
| Msa0625550 | Msa0790520 | 0.806144 | 9.484889e-50 | -8.615850e-47 |
| Msa0648160 | Msa0790520 | 0.806530 | 7.865084e-50 | -8.615850e-47 |
| Msa0648260 | Msa0790520 | 0.804624 | 1.976035e-49 | -8.615850e-47 |
| Msa0688880 | Msa0790520 | 0.807071 | 6.046531e-50 | -8.615850e-47 |
| Msa0706700 | Msa0790520 | 0.820891 | 5.396929e-53 | -8.615850e-47 |
| Msa0713530 | Msa0790520 | 0.832229 | 1.065110e-55 | -8.615850e-47 |
| Msa0747660 | Msa0790520 | 0.816091 | 6.612878e-52 | -8.615850e-47 |
| Msa0755590 | Msa0790520 | 0.827235 | 1.749529e-54 | -8.615850e-47 |
| Msa0762480 | Msa0790520 | 0.805992 | 1.021221e-49 | -8.615850e-47 |
| Msa0790520 | Msa0793130 | 0.804465 | 2.132851e-49 | -8.615850e-47 |
| Msa0790520 | Msa0797240 | 0.848169 | 7.273242e-60 | -8.615850e-47 |
| Msa0790520 | Msa0835010 | 0.836044 | 1.178396e-56 | -8.615850e-47 |
| Msa0790520 | Msa0842370 | 0.807149 | 5.820556e-50 | -8.615850e-47 |
| Msa0790520 | Msa0848860 | 0.823110 | 1.652453e-53 | -8.615850e-47 |
| Msa0790520 | Msa0869320 | 0.809577 | 1.766166e-50 | -8.615850e-47 |
| Msa0790520 | Msa0906180 | 0.802018 | 6.844426e-49 | -8.615850e-47 |
| Msa0790520 | Msa0938190 | 0.806856 | 6.711569e-50 | -8.615850e-47 |
| Msa0790520 | Msa1033460 | 0.804466 | 2.131561e-49 | -8.615850e-47 |
| Msa0790520 | Msa1038420 | 0.807567 | 4.746200e-50 | -8.615850e-47 |
| Msa0790520 | Msa1065090 | 0.806189 | 9.284153e-50 | -8.615850e-47 |
| Msa0790520 | Msa1089130 | 0.855107 | 7.876230e-62 | -8.615850e-47 |
| Msa0790520 | Msa1113780 | 0.811013 | 8.657291e-51 | -8.615850e-47 |
| Msa0790520 | Msa1129320 | 0.815767 | 7.810539e-52 | -8.615850e-47 |
| Msa0790520 | Msa1160470 | 0.803195 | 3.913458e-49 | -8.615850e-47 |
| Msa0790520 | Msa1160480 | 0.833622 | 4.797167e-56 | -8.615850e-47 |
| Msa0790520 | Msa1172120 | 0.801895 | 7.256305e-49 | -8.615850e-47 |
| Msa0790520 | Msa1207710 | 0.843838 | 1.095607e-58 | -8.615850e-47 |
| Msa0790520 | Msa1207760 | 0.841325 | 5.088054e-58 | -8.615850e-47 |
| Msa0790520 | Msa1212210 | 0.800619 | 1.323557e-48 | -8.615850e-47 |
| Msa0790520 | Msa1221490 | 0.837828 | 4.127580e-57 | -8.615850e-47 |
| Msa0790520 | Msa1222050 | 0.820014 | 8.576505e-53 | -8.615850e-47 |
| Msa0790520 | Msa1245870 | 0.818968 | 1.486222e-52 | -8.615850e-47 |
| Msa0790520 | Msa1257930 | 0.821038 | 4.993607e-53 | -8.615850e-47 |
| Msa0790520 | Msa1257960 | 0.845364 | 4.253340e-59 | -8.615850e-47 |
| Msa0790520 | Msa1262740 | 0.806483 | 8.049580e-50 | -8.615850e-47 |
| Msa0790520 | Msa1264900 | 0.812274 | 4.604482e-51 | -8.615850e-47 |
| Msa0790520 | Msa1277830 | 0.801081 | 1.065513e-48 | -8.615850e-47 |
| Msa0790520 | Msa1277890 | 0.817830 | 2.690928e-52 | -8.615850e-47 |
| Msa0790520 | Msa1277930 | 0.802389 | 5.742405e-49 | -8.615850e-47 |
| Msa0790520 | Msa1297540 | 0.815049 | 1.128103e-51 | -8.615850e-47 |
| Msa0790520 | Msa1298980 | 0.841168 | 5.595191e-58 | -8.615850e-47 |
| Msa0790520 | Msa1303190 | 0.829945 | 3.875370e-55 | -8.615850e-47 |
| Msa0790520 | Msa1316880 | 0.824956 | 6.092396e-54 | -8.615850e-47 |
| Msa0790520 | Msa1330900 | 0.801986 | 6.951393e-49 | -8.615850e-47 |
| Msa0790520 | Msa1363310 | 0.813276 | 2.777820e-51 | -8.615850e-47 |
| Msa0790520 | Msa1373420 | 0.801039 | 1.086578e-48 | -8.615850e-47 |
| Msa0790520 | Msa1386580 | 0.815086 | 1.106929e-51 | -8.615850e-47 |
| Msa0790520 | Msa1392270 | 0.978767 | 1.608112e-146 | -8.615850e-47 |
| Msa0790520 | Msa1419040 | 0.811057 | 8.468861e-51 | -8.615850e-47 |
| Msa0790520 | Msa1429890 | 0.979010 | 4.881191e-147 | -8.615850e-47 |
| Msa0790520 | Msa1433060 | 0.800538 | 1.375446e-48 | -8.615850e-47 |
| Msa0790520 | Msa1438410 | 0.820906 | 5.354288e-53 | -8.615850e-47 |
| Msa0790520 | Msa1446220 | 0.802936 | 4.428409e-49 | -8.615850e-47 |
| Msa0137810 | Msa0790520 | 0.801997 | 6.914180e-49 | -8.615850e-47 |
| Msa0151780 | Msa0790520 | 0.807163 | 5.781344e-50 | -8.615850e-47 |
| Msa0166580 | Msa0790520 | 0.804803 | 1.812626e-49 | -8.615850e-47 |
| Msa0187560 | Msa0790520 | 0.808123 | 3.614145e-50 | -8.615850e-47 |
| Msa0188840 | Msa0790520 | 0.814553 | 1.452905e-51 | -8.615850e-47 |
| Msa0218430 | Msa0790520 | 0.815230 | 1.028172e-51 | -8.615850e-47 |
| Msa0372990 | Msa0790520 | 0.801257 | 9.805763e-49 | -8.615850e-47 |
| Msa0382060 | Msa0790520 | 0.804144 | 2.486747e-49 | -8.615850e-47 |
| Msa0385850 | Msa0790520 | 0.800231 | 1.587852e-48 | -8.615850e-47 |
| Msa0388790 | Msa0790520 | 0.828934 | 6.822044e-55 | -8.615850e-47 |
| Msa0431560 | Msa0790520 | 0.811887 | 5.589976e-51 | -8.615850e-47 |
| Msa0437820 | Msa0790520 | 0.802308 | 5.966296e-49 | -8.615850e-47 |
| Msa0475700 | Msa0790520 | 0.801185 | 1.014418e-48 | -8.615850e-47 |
| Msa0476570 | Msa0790520 | 0.813501 | 2.479762e-51 | -8.615850e-47 |
| Msa0481620 | Msa0790520 | 0.807203 | 5.668935e-50 | -8.615850e-47 |
| Msa0270090 | Msa0790520 | 0.985413 | 1.724113e-163 | -8.615850e-47 |
| Msa0270640 | Msa0790520 | 0.800182 | 1.624835e-48 | -8.615850e-47 |
| Msa0297270 | Msa0790520 | 0.804173 | 2.452963e-49 | -8.615850e-47 |
| Msa0363180 | Msa0790520 | 0.803601 | 3.224639e-49 | -8.615850e-47 |
| Msa0486850 | Msa0790520 | 0.802027 | 6.816884e-49 | -8.615850e-47 |
| Msa0526520 | Msa0790520 | 0.816118 | 6.520086e-52 | -8.615850e-47 |
| Msa0554410 | Msa0790520 | 0.807018 | 6.204702e-50 | -8.615850e-47 |
| Msa0571900 | Msa0790520 | 0.822658 | 2.105269e-53 | -8.615850e-47 |
| Msa0577960 | Msa0790520 | 0.806746 | 7.083704e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790520 | MtrunA17_Chr2g0276881 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Msa0790520 | MtrunA17_Chr4g0076971 | 78.828 | 751 | 145 | 6 | 21 | 766 | 34 | 775 | 0.0 | 1139 |
| Msa0790520 | MtrunA17_Chr6g0477391 | 68.609 | 755 | 223 | 6 | 16 | 766 | 49 | 793 | 0.0 | 1011 |
| Msa0790520 | MtrunA17_Chr4g0064521 | 59.463 | 745 | 293 | 5 | 21 | 762 | 16 | 754 | 0.0 | 840 |
| Msa0790520 | MtrunA17_Chr7g0225591 | 53.421 | 760 | 330 | 10 | 21 | 766 | 41 | 790 | 0.0 | 800 |
| Msa0790520 | MtrunA17_Chr6g0459451 | 53.238 | 772 | 343 | 8 | 3 | 766 | 8 | 769 | 0.0 | 797 |
| Msa0790520 | MtrunA17_Chr0c12g0493681 | 74.118 | 510 | 120 | 7 | 21 | 525 | 34 | 536 | 0.0 | 718 |
| Msa0790520 | MtrunA17_Chr5g0394301 | 48.066 | 724 | 345 | 15 | 46 | 751 | 46 | 756 | 0.0 | 605 |
| Msa0790520 | MtrunA17_Chr5g0396861 | 71.667 | 60 | 14 | 1 | 701 | 760 | 57 | 113 | 7.73e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790520 | AT5G49890.1 | 74.935 | 766 | 175 | 6 | 9 | 766 | 23 | 779 | 0.0 | 1129 |
| Msa0790520 | AT5G33280.1 | 60.292 | 753 | 290 | 5 | 17 | 766 | 7 | 753 | 0.0 | 898 |
| Msa0790520 | AT3G27170.1 | 53.633 | 757 | 331 | 7 | 21 | 766 | 28 | 775 | 0.0 | 795 |
| Msa0790520 | AT5G40890.1 | 52.294 | 763 | 350 | 6 | 9 | 766 | 17 | 770 | 0.0 | 785 |
| Msa0790520 | AT5G40890.2 | 53.096 | 646 | 289 | 6 | 126 | 766 | 2 | 638 | 0.0 | 671 |
| Msa0790520 | AT5G26240.1 | 49.169 | 722 | 337 | 14 | 46 | 751 | 44 | 751 | 0.0 | 581 |
| Msa0790520 | AT5G26240.2 | 49.169 | 722 | 337 | 14 | 46 | 751 | 44 | 751 | 0.0 | 581 |
Find 225 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAGGGGATGTTGTTTC+TGG | 0.134484 | 5_3:-1295327 | Msa0790520:CDS |
| CTCCTCGCAGTTATATTTCT+TGG | 0.211442 | 5_3:-1296432 | Msa0790520:CDS |
| AGGGATAAGGGTGGAGGATT+TGG | 0.218217 | 5_3:-1295046 | Msa0790520:CDS |
| GCTTCTTACGGGCGTCTTAT+AGG | 0.220379 | 5_3:-1295627 | Msa0790520:CDS |
| TGGACCCTTGCACTTCTTAT+TGG | 0.235718 | 5_3:-1297270 | Msa0790520:CDS |
| CTTCTTATTGGTTTAATTAC+AGG | 0.242997 | 5_3:-1297258 | Msa0790520:CDS |
| GCTCCTGCAGCTGCTGGCTC+TGG | 0.249646 | 5_3:-1297069 | Msa0790520:CDS |
| TGAAGTGGTGGACAGATATT+TGG | 0.256773 | 5_3:-1296885 | Msa0790520:intron |
| TACATTGCTCCTGCAGCTGC+TGG | 0.262305 | 5_3:-1297075 | Msa0790520:CDS |
| TCTGCATGTGCTTCCATATA+AGG | 0.301605 | 5_3:+1295369 | None:intergenic |
| TAACCTCCTGTATTCGATTT+GGG | 0.302618 | 5_3:-1295956 | Msa0790520:CDS |
| TTATTCATGTGGCTACTTGC+GGG | 0.305540 | 5_3:+1294677 | None:intergenic |
| GTAACCTCCTGTATTCGATT+TGG | 0.310912 | 5_3:-1295957 | Msa0790520:CDS |
| CATTGATGCACATTCTATAT+TGG | 0.317699 | 5_3:-1297016 | Msa0790520:CDS |
| ACCAGTATAATCTTGAATAT+TGG | 0.317913 | 5_3:+1295996 | None:intergenic |
| GAAGTATCTGAGCCATTTCC+AGG | 0.320283 | 5_3:+1296746 | None:intergenic |
| TTACTTACTCCTGGTTTCTT+AGG | 0.328013 | 5_3:+1294880 | None:intergenic |
| GAAGCCTGCGGTTGGGGAGC+TGG | 0.334474 | 5_3:+1295890 | None:intergenic |
| TACTTGCGGGGATTCAAGTT+GGG | 0.335456 | 5_3:+1294690 | None:intergenic |
| TTCATTCCCGTCATACTTGC+CGG | 0.335866 | 5_3:-1295651 | Msa0790520:CDS |
| GTTATATTTCTTGGAGTCAT+TGG | 0.336790 | 5_3:-1296423 | Msa0790520:CDS |
| ATTGTTTCAACAACAGTATA+TGG | 0.343669 | 5_3:+1294964 | None:intergenic |
| CTTGGAGCCGCATCTTTCCT+TGG | 0.354614 | 5_3:-1295555 | Msa0790520:CDS |
| ACGGGTTTGTTTGCTCTCCT+TGG | 0.355427 | 5_3:-1295573 | Msa0790520:CDS |
| ACCTTGACAAAGAGGGTAGA+TGG | 0.360767 | 5_3:+1296991 | None:intergenic |
| GTTGAAGGGACTACCTTATA+TGG | 0.362650 | 5_3:-1295382 | Msa0790520:CDS |
| CTTGGAGTTGAGAATATTGC+TGG | 0.363001 | 5_3:-1297213 | Msa0790520:CDS |
| GGTGTTGAGGTCTCATCTTT+TGG | 0.367282 | 5_3:-1295175 | Msa0790520:CDS |
| TACTTGCCGGAGCTTCTTAC+GGG | 0.368030 | 5_3:-1295638 | Msa0790520:CDS |
| GGGGAGCTGGGACACTCCCC+TGG | 0.370301 | 5_3:+1295903 | None:intergenic |
| ATGCCAGAGCCAGCAGCTGC+AGG | 0.373077 | 5_3:+1297066 | None:intergenic |
| GGTTTAATTACAGGACTTGT+TGG | 0.379756 | 5_3:-1297249 | Msa0790520:CDS |
| CTTCTTACGGGCGTCTTATA+GGG | 0.383986 | 5_3:-1295626 | Msa0790520:CDS |
| GGAGGCAGATGTGGTCTGTT+TGG | 0.388393 | 5_3:-1296516 | Msa0790520:CDS |
| ATACTTGCCGGAGCTTCTTA+CGG | 0.390348 | 5_3:-1295639 | Msa0790520:CDS |
| GCAAAACCAGGTTTGGGAAG+AGG | 0.390549 | 5_3:-1295066 | Msa0790520:CDS |
| TCGTAATCAAGACTCTGAAT+AGG | 0.390749 | 5_3:+1299493 | None:intergenic |
| TTTCATGCACGACTATATCT+TGG | 0.398252 | 5_3:-1294721 | Msa0790520:CDS |
| ACTCTGAATAGGGCAAATAT+TGG | 0.400965 | 5_3:+1299504 | None:intergenic |
| TCCATTCACAGCTCTGGATA+CGG | 0.401365 | 5_3:-1295592 | Msa0790520:CDS |
| CACTCGAAGAAGCAGCTTCA+TGG | 0.403268 | 5_3:-1296629 | Msa0790520:CDS |
| TGAGAATGATCTATTGAAAC+AGG | 0.409569 | 5_3:-1297343 | Msa0790520:CDS |
| AAGCCTGCGGTTGGGGAGCT+GGG | 0.414364 | 5_3:+1295891 | None:intergenic |
| CTTATCCCTCTTCCCAAACC+TGG | 0.414445 | 5_3:+1295060 | None:intergenic |
| TCCAATATTCAAGATTATAC+TGG | 0.417742 | 5_3:-1295997 | Msa0790520:CDS |
| TACTGTTTCCACGAAGCTAT+AGG | 0.418181 | 5_3:+1294625 | None:intergenic |
| TCTTATGCAATTCTGTCATC+AGG | 0.419705 | 5_3:-1296541 | Msa0790520:CDS |
| TTGAGGTATGCTTTCACCTC+TGG | 0.425877 | 5_3:+1297042 | None:intergenic |
| AGGTCGGGTGTGGTGTAGGC+AGG | 0.427469 | 5_3:+1296453 | None:intergenic |
| CAGGTTTGGGAAGAGGGATA+AGG | 0.427720 | 5_3:-1295059 | Msa0790520:CDS |
| GCATGAAATCATGCCTTGTC+AGG | 0.431401 | 5_3:+1294736 | None:intergenic |
| CGTAATCAAGACTCTGAATA+GGG | 0.431994 | 5_3:+1299494 | None:intergenic |
| GCGAACAGAACACCACCAAC+GGG | 0.432693 | 5_3:+1296651 | None:intergenic |
| TGCAGAGGCCTCCAATTGTT+GGG | 0.432801 | 5_3:-1294761 | Msa0790520:intron |
| TACGGTGTTGCCATTCCCTC+TGG | 0.437284 | 5_3:-1295678 | Msa0790520:CDS |
| AGGTGGAACCATCGTTGAAT+AGG | 0.437290 | 5_3:+1295775 | None:intergenic |
| CAAAACCAGGTTTGGGAAGA+GGG | 0.444847 | 5_3:-1295065 | Msa0790520:CDS |
| AATATAACTGCGAGGAGGTC+GGG | 0.446107 | 5_3:+1296438 | None:intergenic |
| GTTTAATTACAGGACTTGTT+GGG | 0.448390 | 5_3:-1297248 | Msa0790520:CDS |
| AGCAGACAAGAGACGATAAT+CGG | 0.449779 | 5_3:-1299731 | Msa0790520:five_prime_UTR |
| GCCACTAAATTCCTCATGTA+TGG | 0.450639 | 5_3:+1295345 | None:intergenic |
| GTGCAGAGGCCTCCAATTGT+TGG | 0.453486 | 5_3:-1294762 | Msa0790520:intron |
| TCAAAGTGTGTGCCATGTCC+AGG | 0.453734 | 5_3:-1295921 | Msa0790520:CDS |
| AGGTTTGGGAAGAGGGATAA+GGG | 0.453961 | 5_3:-1295058 | Msa0790520:CDS |
| TCCACTTCAGAACAACATAT+TGG | 0.454549 | 5_3:+1297289 | None:intergenic |
| AGTTGATGAGCCTCCTTTGA+CGG | 0.454792 | 5_3:-1295220 | Msa0790520:CDS |
| CTACTTGCGGGGATTCAAGT+TGG | 0.455750 | 5_3:+1294689 | None:intergenic |
| TATGGAGAAGTATTTGTGAT+TGG | 0.458788 | 5_3:+1294982 | None:intergenic |
| TATTGAGAAGCCTGCGGTTG+GGG | 0.460000 | 5_3:+1295884 | None:intergenic |
| TGGAGTCATTGGAGGTCTCA+TGG | 0.460194 | 5_3:-1296412 | Msa0790520:CDS |
| TGATCAGATTGTGGAGTTGA+AGG | 0.461511 | 5_3:-1295397 | Msa0790520:CDS |
| GTATTGAGAAGCCTGCGGTT+GGG | 0.466094 | 5_3:+1295883 | None:intergenic |
| GATAAAGTCCTTCGCACTTA+CGG | 0.466861 | 5_3:-1296366 | Msa0790520:CDS |
| TTGCTTGAGCATGAGATTGT+TGG | 0.466888 | 5_3:+1297173 | None:intergenic |
| AATATCGACTCACCTGGAAA+TGG | 0.467418 | 5_3:-1296758 | Msa0790520:CDS |
| TTCATGCACGACTATATCTT+GGG | 0.468911 | 5_3:-1294720 | Msa0790520:CDS |
| TTTATTCATGTGGCTACTTG+CGG | 0.470591 | 5_3:+1294676 | None:intergenic |
| TACTATTGTGAACAAGGTTA+AGG | 0.471521 | 5_3:-1295100 | Msa0790520:CDS |
| GTTGGGTTCTTTAATAACCT+TGG | 0.479221 | 5_3:-1297231 | Msa0790520:CDS |
| CTGAGATCATTGTAGTGGTT+TGG | 0.481255 | 5_3:+1295837 | None:intergenic |
| ACCAATATGTTGTTCTGAAG+TGG | 0.487564 | 5_3:-1297290 | Msa0790520:CDS |
| TTTGTGGCGATATACTTGCT+TGG | 0.487857 | 5_3:-1295711 | Msa0790520:CDS |
| ATTACGTGCGGTGCAGCTGC+TGG | 0.488782 | 5_3:-1296696 | Msa0790520:CDS |
| TATCGACAAGATAATTGTAA+AGG | 0.489181 | 5_3:+1296385 | None:intergenic |
| CTTGTCAGGATCCCAACAAT+TGG | 0.493087 | 5_3:+1294750 | None:intergenic |
| AGAAGCTCCGGCAAGTATGA+CGG | 0.495770 | 5_3:+1295644 | None:intergenic |
| GAGACTTGATAGCTGAAATC+CGG | 0.497443 | 5_3:+1295743 | None:intergenic |
| GAGGAGGTCGGGTGTGGTGT+AGG | 0.498450 | 5_3:+1296449 | None:intergenic |
| CCATTCACAGCTCTGGATAC+GGG | 0.500003 | 5_3:-1295591 | Msa0790520:CDS |
| CATCAGATCCTATAGCTTCG+TGG | 0.500885 | 5_3:-1294633 | None:intergenic |
| AAAGGAGGCTCATCAACTAC+TGG | 0.501049 | 5_3:+1295225 | None:intergenic |
| GGAGCCGCATCTTTCCTTGG+TGG | 0.504489 | 5_3:-1295552 | Msa0790520:CDS |
| GATGGCTCCATTCACAGCTC+TGG | 0.504776 | 5_3:-1295598 | Msa0790520:CDS |
| ATATTTCTTGGAGTCATTGG+AGG | 0.505188 | 5_3:-1296420 | Msa0790520:CDS |
| GGACATTTCACAAGAGGAGA+TGG | 0.507391 | 5_3:-1295025 | Msa0790520:CDS |
| GAAAGGATTGATTAATGCCA+TGG | 0.508627 | 5_3:-1299644 | Msa0790520:exon |
| GAAGCTCCGGCAAGTATGAC+GGG | 0.509879 | 5_3:+1295645 | None:intergenic |
| TACATGAGGAATTTAGTGGC+AGG | 0.511292 | 5_3:-1295342 | Msa0790520:CDS |
| CTGGGACACTCCCCTGGACA+TGG | 0.514759 | 5_3:+1295909 | None:intergenic |
| AACTGCGAGGAGGTCGGGTG+TGG | 0.515931 | 5_3:+1296443 | None:intergenic |
| GTTGCGGATGGCATCGTCGT+TGG | 0.517368 | 5_3:+1295797 | None:intergenic |
| TGCGAACAGAACACCACCAA+CGG | 0.518245 | 5_3:+1296650 | None:intergenic |
| TAACTTGTTGATGCTACCAT+TGG | 0.520536 | 5_3:-1295478 | Msa0790520:CDS |
| TGGAAGCCCAAATCGAATAC+AGG | 0.520741 | 5_3:+1295950 | None:intergenic |
| GCAAATATTGGCTCCAACGA+TGG | 0.520937 | 5_3:+1299516 | None:intergenic |
| CAACACCAACCCGCACAACT+CGG | 0.524524 | 5_3:+1295191 | None:intergenic |
| AATGAAGAGTCCAGAGGGAA+TGG | 0.524646 | 5_3:+1295668 | None:intergenic |
| AACACCAACCCGCACAACTC+GGG | 0.524685 | 5_3:+1295192 | None:intergenic |
| AAATATAACTGCGAGGAGGT+CGG | 0.525416 | 5_3:+1296437 | None:intergenic |
| TGTCCCAGCTCCCCAACCGC+AGG | 0.526466 | 5_3:-1295894 | Msa0790520:CDS |
| CCCGTATCCAGAGCTGTGAA+TGG | 0.526772 | 5_3:+1295591 | None:intergenic |
| CGGATGCTCCCGAGTTGTGC+GGG | 0.526808 | 5_3:-1295200 | Msa0790520:CDS |
| TCTTCTCAACTCGCCATCGT+TGG | 0.526966 | 5_3:-1299529 | Msa0790520:CDS |
| GCTTGCATTGCTAATTTACT+CGG | 0.527957 | 5_3:-1296798 | Msa0790520:CDS |
| TTTGGGAAGAGGGATAAGGG+TGG | 0.528215 | 5_3:-1295055 | Msa0790520:CDS |
| ACTAGGGAGAGGGTGATGAC+AGG | 0.529305 | 5_3:-1295126 | Msa0790520:CDS |
| GGGAAGAGGGATAAGGGTGG+AGG | 0.531741 | 5_3:-1295052 | Msa0790520:CDS |
| AGATCATTGTAGTGGTTTGG+TGG | 0.533472 | 5_3:+1295840 | None:intergenic |
| TATTCATGTGGCTACTTGCG+GGG | 0.534257 | 5_3:+1294678 | None:intergenic |
| GCCATACATGAGGAATTTAG+TGG | 0.536201 | 5_3:-1295346 | Msa0790520:CDS |
| TACGATCATCGATCAAAGAA+AGG | 0.537082 | 5_3:-1299661 | Msa0790520:five_prime_UTR |
| GGCACACACTTTGATAGCAA+TGG | 0.537690 | 5_3:+1295930 | None:intergenic |
| GATCAGATTGTGGAGTTGAA+GGG | 0.538314 | 5_3:-1295396 | Msa0790520:CDS |
| GTCAGGATCCCAACAATTGG+AGG | 0.542092 | 5_3:+1294753 | None:intergenic |
| CCTTGACAAAGAGGGTAGAT+GGG | 0.543090 | 5_3:+1296992 | None:intergenic |
| AAGAAGCAGCTTCATGGTGG+AGG | 0.544267 | 5_3:-1296623 | Msa0790520:CDS |
| AGTTGTGCGGGTTGGTGTTG+AGG | 0.544920 | 5_3:-1295188 | Msa0790520:CDS |
| ATGATCTATTGAAACAGGAC+TGG | 0.545905 | 5_3:-1297338 | Msa0790520:CDS |
| CTAGTTGTGCCTAAGAAACC+AGG | 0.546145 | 5_3:-1294889 | Msa0790520:CDS |
| CATGAGGAATTTAGTGGCAG+GGG | 0.546458 | 5_3:-1295340 | Msa0790520:CDS |
| GAAGGACCCATGGTTCATAC+AGG | 0.549790 | 5_3:-1296822 | Msa0790520:CDS |
| ACGGATGCTCCCGAGTTGTG+CGG | 0.550426 | 5_3:-1295201 | Msa0790520:CDS |
| AACTCGGGAGCATCCGTCAA+AGG | 0.551479 | 5_3:+1295207 | None:intergenic |
| GGAGTCATTGGAGGTCTCAT+GGG | 0.552861 | 5_3:-1296411 | Msa0790520:CDS |
| TGTGAACAAGGTTAAGGCAA+GGG | 0.554225 | 5_3:-1295094 | Msa0790520:CDS |
| AAATCCGGCGTTAGCAGAGG+TGG | 0.554279 | 5_3:+1295758 | None:intergenic |
| AACCATCGTTGAATAGGTTG+CGG | 0.554720 | 5_3:+1295781 | None:intergenic |
| CGCGTAAATATCGACTCACC+TGG | 0.554841 | 5_3:-1296764 | Msa0790520:CDS |
| AGCACAAGACATTGTTCACT+AGG | 0.556246 | 5_3:-1295143 | Msa0790520:CDS |
| GATGTGGTCTGTTTGGAGAA+GGG | 0.556580 | 5_3:-1296509 | Msa0790520:CDS |
| ATGTGGTCTGTTTGGAGAAG+GGG | 0.556647 | 5_3:-1296508 | Msa0790520:CDS |
| CCCATCTACCCTCTTTGTCA+AGG | 0.557767 | 5_3:-1296992 | Msa0790520:intron |
| TGTATTGAGAAGCCTGCGGT+TGG | 0.559502 | 5_3:+1295882 | None:intergenic |
| AAGACGCCCGTAAGAAGCTC+CGG | 0.562668 | 5_3:+1295632 | None:intergenic |
| CAAAGTGTGTGCCATGTCCA+GGG | 0.563335 | 5_3:-1295920 | Msa0790520:CDS |
| GATGCTACCATTGGTCATGT+TGG | 0.563949 | 5_3:-1295469 | Msa0790520:CDS |
| GGATTTGGACATTTCACAAG+AGG | 0.564011 | 5_3:-1295031 | Msa0790520:CDS |
| CATCAGGGAGGAGGCAGATG+TGG | 0.564378 | 5_3:-1296525 | Msa0790520:CDS |
| AGATGTGGTCTGTTTGGAGA+AGG | 0.565982 | 5_3:-1296510 | Msa0790520:CDS |
| TCTCCTCGTTTCTAAGACAG+TGG | 0.567789 | 5_3:-1295445 | Msa0790520:CDS |
| CAAGGAAAGATGCGGCTCCA+AGG | 0.568106 | 5_3:+1295556 | None:intergenic |
| TGCTCCCGAGTTGTGCGGGT+TGG | 0.569910 | 5_3:-1295196 | Msa0790520:CDS |
| ATATATAGTCTTTATTCATG+TGG | 0.571536 | 5_3:+1294666 | None:intergenic |
| CTAGGGAGAGGGTGATGACA+GGG | 0.574990 | 5_3:-1295125 | Msa0790520:CDS |
| TTAAACCAATAAGAAGTGCA+AGG | 0.576883 | 5_3:+1297265 | None:intergenic |
| ATTCTGCTTCTGAGAAGTAA+CGG | 0.580228 | 5_3:+1299559 | None:intergenic |
| CAATTCTGTCATCAGGGAGG+AGG | 0.583424 | 5_3:-1296534 | Msa0790520:CDS |
| GATTAATGCCATGGACATGA+TGG | 0.584376 | 5_3:-1299635 | Msa0790520:exon |
| TAGTGACTCCATCATGTCCA+TGG | 0.590022 | 5_3:+1299627 | None:intergenic |
| ATCGTTGAATAGGTTGCGGA+TGG | 0.590388 | 5_3:+1295785 | None:intergenic |
| ACATGAGGAATTTAGTGGCA+GGG | 0.591059 | 5_3:-1295341 | Msa0790520:CDS |
| TTGTGAACAAGGTTAAGGCA+AGG | 0.592086 | 5_3:-1295095 | Msa0790520:CDS |
| TAAACCAATAAGAAGTGCAA+GGG | 0.592950 | 5_3:+1297266 | None:intergenic |
| TAGAGAAACTGTCATTCTCA+TGG | 0.593783 | 5_3:+1295527 | None:intergenic |
| AGGTGTTTATGATCAGATTG+TGG | 0.595548 | 5_3:-1295406 | Msa0790520:CDS |
| CAAGCACCTGTATGAACCAT+GGG | 0.595972 | 5_3:+1296816 | None:intergenic |
| CAATTGTTGGGATCCTGACA+AGG | 0.596275 | 5_3:-1294749 | Msa0790520:CDS |
| GCAAGCACCTGTATGAACCA+TGG | 0.596508 | 5_3:+1296815 | None:intergenic |
| ATCTATTGAAACAGGACTGG+AGG | 0.598594 | 5_3:-1297335 | Msa0790520:CDS |
| ATTAGAAGTGACAGAACGGA+GGG | 0.598601 | 5_3:-1299804 | None:intergenic |
| ACTTGCGGGGATTCAAGTTG+GGG | 0.599332 | 5_3:+1294691 | None:intergenic |
| CAGCAATATTCTCAACTCCA+AGG | 0.606942 | 5_3:+1297214 | None:intergenic |
| AATTACGTACCTTGACAAAG+AGG | 0.607782 | 5_3:+1296983 | None:intergenic |
| CTGAAATCCGGCGTTAGCAG+AGG | 0.610351 | 5_3:+1295755 | None:intergenic |
| GAGAGCTGAGATCATTGTAG+TGG | 0.610606 | 5_3:+1295832 | None:intergenic |
| ACGGGAATGAAGAGTCCAGA+GGG | 0.612848 | 5_3:+1295663 | None:intergenic |
| CAGGAGCAATGTAAGCACAC+AGG | 0.614796 | 5_3:+1297085 | None:intergenic |
| GACATTGTTCACTAGGGAGA+GGG | 0.615845 | 5_3:-1295136 | Msa0790520:CDS |
| AACAACTGCTACTACTGCAG+TGG | 0.616642 | 5_3:+1296572 | None:intergenic |
| TGTGGGGAAAGAAGGACCCA+TGG | 0.617260 | 5_3:-1296832 | Msa0790520:CDS |
| TTGCTTGGAATTGTGACATA+CGG | 0.617835 | 5_3:-1295696 | Msa0790520:CDS |
| GAGGCATTTGCAGTGTACGT+TGG | 0.618257 | 5_3:-1297141 | Msa0790520:CDS |
| AGACATTGTTCACTAGGGAG+AGG | 0.620397 | 5_3:-1295137 | Msa0790520:CDS |
| CTTATGCAATTCTGTCATCA+GGG | 0.620544 | 5_3:-1296540 | Msa0790520:CDS |
| ATTGCTAATTTACTCGGACA+AGG | 0.621738 | 5_3:-1296792 | Msa0790520:CDS |
| TTATAGCGCCGTAAGTGCGA+AGG | 0.622975 | 5_3:+1296358 | None:intergenic |
| AGGAGCAATGTAAGCACACA+GGG | 0.624127 | 5_3:+1297086 | None:intergenic |
| GGTGGAGGAGTGCTCTTCTG+TGG | 0.624513 | 5_3:-1296608 | Msa0790520:CDS |
| AACGATGGCGAGTTGAGAAG+AGG | 0.626560 | 5_3:+1299531 | None:intergenic |
| TCATTCTCATGGTGCCACCA+AGG | 0.628418 | 5_3:+1295538 | None:intergenic |
| TGCTGGCTCTGGCATACCAG+AGG | 0.630169 | 5_3:-1297058 | Msa0790520:CDS |
| AGGGTCTACTATTGTGAACA+AGG | 0.630406 | 5_3:-1295106 | Msa0790520:CDS |
| TGTGGTCTGTTTGGAGAAGG+GGG | 0.633017 | 5_3:-1296507 | Msa0790520:CDS |
| GATTAGAAGTGACAGAACGG+AGG | 0.633144 | 5_3:-1299805 | None:intergenic |
| AGGAGGGATTTGATTACGTG+CGG | 0.636837 | 5_3:-1296708 | Msa0790520:CDS |
| TGGAGTCACTAACAGAGGAA+AGG | 0.639982 | 5_3:-1299615 | Msa0790520:CDS |
| TCGGGAGCATCCGTCAAAGG+AGG | 0.647188 | 5_3:+1295210 | None:intergenic |
| GCACAAGACATTGTTCACTA+GGG | 0.647788 | 5_3:-1295142 | Msa0790520:CDS |
| ATTACGTACCTTGACAAAGA+GGG | 0.651505 | 5_3:+1296984 | None:intergenic |
| AGGAGAACCAACATGACCAA+TGG | 0.653549 | 5_3:+1295462 | None:intergenic |
| GAGGTGAAAGCATACCTCAA+CGG | 0.653916 | 5_3:-1297039 | Msa0790520:CDS |
| CTTGACAAAGAGGGTAGATG+GGG | 0.654562 | 5_3:+1296993 | None:intergenic |
| GGACTGGAGGTCAAGAACAA+AGG | 0.657057 | 5_3:-1297322 | Msa0790520:CDS |
| GCGTCTTATAGGGACTGTGA+TGG | 0.661114 | 5_3:-1295616 | Msa0790520:CDS |
| AAGGATTAGAAGTGACAGAA+CGG | 0.663020 | 5_3:-1299808 | None:intergenic |
| CAGCCACTGTCTTAGAAACG+AGG | 0.666093 | 5_3:+1295442 | None:intergenic |
| GGTTCCACCTCTGCTAACGC+CGG | 0.666107 | 5_3:-1295762 | Msa0790520:CDS |
| TCGAAGAAGCAGCTTCATGG+TGG | 0.672233 | 5_3:-1296626 | Msa0790520:CDS |
| GAACAGAACACCACCAACGG+GGG | 0.675854 | 5_3:+1296653 | None:intergenic |
| GCTAATTTACTCGGACAAGG+TGG | 0.678870 | 5_3:-1296789 | Msa0790520:CDS |
| GGTGCCACCAAGGAAAGATG+CGG | 0.680001 | 5_3:+1295548 | None:intergenic |
| ATCCGCAACCTATTCAACGA+TGG | 0.680395 | 5_3:-1295783 | Msa0790520:CDS |
| AAAGTGTGTGCCATGTCCAG+GGG | 0.681077 | 5_3:-1295919 | Msa0790520:CDS |
| CATGATGGAGTCACTAACAG+AGG | 0.687175 | 5_3:-1299620 | Msa0790520:CDS |
| TTGAAAGTGACAGAACATCA+CGG | 0.692777 | 5_3:-1295252 | Msa0790520:CDS |
| CGAACAGAACACCACCAACG+GGG | 0.696103 | 5_3:+1296652 | None:intergenic |
| GACGGGAATGAAGAGTCCAG+AGG | 0.696782 | 5_3:+1295662 | None:intergenic |
| CTCCAAGAAATATAACTGCG+AGG | 0.697199 | 5_3:+1296430 | None:intergenic |
| AAGCCCAAATCGAATACAGG+AGG | 0.700188 | 5_3:+1295953 | None:intergenic |
| CACATGCAGAGCCATACATG+AGG | 0.706727 | 5_3:-1295356 | Msa0790520:CDS |
| AATGTGCATCAATGCCGTTG+AGG | 0.707928 | 5_3:+1297025 | None:intergenic |
| GCTCAAGCAAAAGTATCACG+AGG | 0.735323 | 5_3:-1297160 | Msa0790520:CDS |
| CAAGAAATATAACTGCGAGG+AGG | 0.742689 | 5_3:+1296433 | None:intergenic |
| ATGCAATTCTGTCATCAGGG+AGG | 0.743594 | 5_3:-1296537 | Msa0790520:CDS |
| GTAGTGTATTGAGAAGCCTG+CGG | 0.784310 | 5_3:+1295878 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATAATAATAATAA+TGG | + | chr5_3:1294744-1294763 | None:intergenic | 0.0% |
| !!! | TTATTTAAATTATATTTTAA+AGG | - | chr5_3:1295869-1295888 | Msa0790520:CDS | 0.0% |
| !!! | TATTTAAATTATATTTTAAA+GGG | - | chr5_3:1295870-1295889 | Msa0790520:CDS | 0.0% |
| !! | TATATATATATATATATATA+AGG | + | chr5_3:1298106-1298125 | None:intergenic | 0.0% |
| !!! | GGATTTTTTTTTAATTAATA+CGG | + | chr5_3:1295111-1295130 | None:intergenic | 10.0% |
| !!! | TAAAAAAAAATCCTAAATTT+TGG | - | chr5_3:1295118-1295137 | Msa0790520:CDS | 10.0% |
| !!! | TATAAGTAATTTTTTTTTGT+AGG | - | chr5_3:1296129-1296148 | Msa0790520:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTTGTA+GGG | - | chr5_3:1296130-1296149 | Msa0790520:intron | 10.0% |
| !!! | AAAATTCATCTTTTAAAATA+GGG | + | chr5_3:1296233-1296252 | None:intergenic | 10.0% |
| !!! | AAAAATTCATCTTTTAAAAT+AGG | + | chr5_3:1296234-1296253 | None:intergenic | 10.0% |
| !!! | AATCTTATAAATATTTTCTA+AGG | + | chr5_3:1296522-1296541 | None:intergenic | 10.0% |
| !!! | ATTTTTGCTTAAATTCTTTT+CGG | - | chr5_3:1295082-1295101 | Msa0790520:CDS | 15.0% |
| !!! | TTTTGTTCATGTTTTTTTTT+TGG | - | chr5_3:1295519-1295538 | Msa0790520:CDS | 15.0% |
| !!! | TTTTTAATCCCTATAAAATT+GGG | - | chr5_3:1295902-1295921 | Msa0790520:CDS | 15.0% |
| !! | AAGTAAATACTAAACTTAAA+AGG | + | chr5_3:1295929-1295948 | None:intergenic | 15.0% |
| !!! | TCAAAATTTTAAGAGTTTTA+AGG | - | chr5_3:1296069-1296088 | Msa0790520:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr5_3:1296159-1296178 | Msa0790520:intron | 15.0% |
| !! | TATAATTGATTAGTATTTGA+AGG | - | chr5_3:1296639-1296658 | Msa0790520:CDS | 15.0% |
| !! | ATAATTGATTAGTATTTGAA+GGG | - | chr5_3:1296640-1296659 | Msa0790520:CDS | 15.0% |
| !! | AATTAAAAATAGTGTAACAA+TGG | - | chr5_3:1296871-1296890 | Msa0790520:CDS | 15.0% |
| !! | GTTTATTTAATTGTGATTAT+TGG | - | chr5_3:1296942-1296961 | Msa0790520:intron | 15.0% |
| !!! | ATTAAGCTATATGTTAATTT+TGG | - | chr5_3:1297039-1297058 | Msa0790520:CDS | 15.0% |
| !! | ATTAGTTAACTACTATTTAT+TGG | + | chr5_3:1297519-1297538 | None:intergenic | 15.0% |
| !! | AATAAATAGTAGTTAACTAA+TGG | - | chr5_3:1297518-1297537 | Msa0790520:intron | 15.0% |
| !! | ATCAAAATAGATTAACACAA+AGG | + | chr5_3:1295148-1295167 | None:intergenic | 20.0% |
| !!! | TGTGTTAATCTATTTTGATT+TGG | - | chr5_3:1295149-1295168 | Msa0790520:CDS | 20.0% |
| !!! | ACTTAATTTGTGAAATTGTT+TGG | - | chr5_3:1295363-1295382 | Msa0790520:CDS | 20.0% |
| !!! | GTTTTTTTTTTGGTTATAAC+TGG | - | chr5_3:1295529-1295548 | Msa0790520:CDS | 20.0% |
| !!! | GTTTTTAATCCCTATAAAAT+TGG | - | chr5_3:1295901-1295920 | Msa0790520:CDS | 20.0% |
| !! | AAACAGATTTGAATTGATTA+GGG | + | chr5_3:1296003-1296022 | None:intergenic | 20.0% |
| !! | TAAACAGATTTGAATTGATT+AGG | + | chr5_3:1296004-1296023 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTCCTATAAAATT+GGG | + | chr5_3:1296201-1296220 | None:intergenic | 20.0% |
| !!! | AATAGGGTTAAATATGTTTT+TGG | + | chr5_3:1296217-1296236 | None:intergenic | 20.0% |
| !!! | TCTTTACTATCTTAACTTTT+TGG | + | chr5_3:1296411-1296430 | None:intergenic | 20.0% |
| !! | ACTCTTAAATGAATCAATTT+CGG | + | chr5_3:1296578-1296597 | None:intergenic | 20.0% |
| !!! | GCGTTTTCTAAAAAAAAAAT+GGG | - | chr5_3:1296837-1296856 | Msa0790520:CDS | 20.0% |
| !!! | TTTTCTAAAAAAAAAATGGG+AGG | - | chr5_3:1296840-1296859 | Msa0790520:CDS | 20.0% |
| !!! | TTTCTAAAAAAAAAATGGGA+GGG | - | chr5_3:1296841-1296860 | Msa0790520:CDS | 20.0% |
| !!! | TAAATAAACACTTTGAAAGT+TGG | + | chr5_3:1296931-1296950 | None:intergenic | 20.0% |
| !!! | ATCTTTTACAATTACTAATC+TGG | - | chr5_3:1298181-1298200 | Msa0790520:intron | 20.0% |
| !! | TAATAACTTAATTGAATTGC+AGG | - | chr5_3:1298403-1298422 | Msa0790520:intron | 20.0% |
| !!! | TCTTTTGCAATATTTATTTG+TGG | - | chr5_3:1299573-1299592 | Msa0790520:CDS | 20.0% |
| !! | ATATATAGTCTTTATTCATG+TGG | + | chr5_3:1299765-1299784 | None:intergenic | 20.0% |
| !!! | CCACGTTAAAATTTGATTTT+GGG | + | chr5_3:1295235-1295254 | None:intergenic | 25.0% |
| !!! | CCAAAATCAAATTTTAACGT+GGG | - | chr5_3:1295233-1295252 | Msa0790520:CDS | 25.0% |
| ! | AAGTTAACAACTTTGCTTAA+GGG | + | chr5_3:1295347-1295366 | None:intergenic | 25.0% |
| ! | TAAGTTAACAACTTTGCTTA+AGG | + | chr5_3:1295348-1295367 | None:intergenic | 25.0% |
| ! | TAAAACTTAGTTTACTCGAT+TGG | - | chr5_3:1295424-1295443 | Msa0790520:CDS | 25.0% |
| !!! | ATATTTGATTTGATATGCTG+TGG | - | chr5_3:1295663-1295682 | Msa0790520:CDS | 25.0% |
| ! | TACATATAAAAGATGTAACG+CGG | + | chr5_3:1295702-1295721 | None:intergenic | 25.0% |
| !! | TAAAAGGTCCCAATTTTATA+GGG | + | chr5_3:1295913-1295932 | None:intergenic | 25.0% |
| !! | TTAAAAGGTCCCAATTTTAT+AGG | + | chr5_3:1295914-1295933 | None:intergenic | 25.0% |
| ! | AGTGCAGGAAAAAAAAATTA+GGG | + | chr5_3:1295970-1295989 | None:intergenic | 25.0% |
| !!! | TAAACAAACTTTGTTTTAGC+AGG | - | chr5_3:1296097-1296116 | Msa0790520:intron | 25.0% |
| !!! | AAACAAACTTTGTTTTAGCA+GGG | - | chr5_3:1296098-1296117 | Msa0790520:intron | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | - | chr5_3:1296189-1296208 | Msa0790520:intron | 25.0% |
| !!! | GTTTTTGGTTCCTATAAAAT+TGG | + | chr5_3:1296202-1296221 | None:intergenic | 25.0% |
| !! | GTTCTAATTAACATTTTCGA+AGG | + | chr5_3:1296387-1296406 | None:intergenic | 25.0% |
| ! | AGTAGAACATTAAAGTGATA+TGG | - | chr5_3:1296595-1296614 | Msa0790520:CDS | 25.0% |
| !!! | CGCGTTTTCTAAAAAAAAAA+TGG | - | chr5_3:1296836-1296855 | Msa0790520:CDS | 25.0% |
| !!! | TTATTTTGTACATAGCTTCA+AGG | - | chr5_3:1296902-1296921 | Msa0790520:intron | 25.0% |
| !! | AAGCTATATGTTAATTTTGG+TGG | - | chr5_3:1297042-1297061 | Msa0790520:CDS | 25.0% |
| !!! | CTTCTTATTGGTTTAATTAC+AGG | - | chr5_3:1297170-1297189 | Msa0790520:CDS | 25.0% |
| !! | TTGGTTGTAACATGATTTTA+GGG | - | chr5_3:1297306-1297325 | Msa0790520:CDS | 25.0% |
| !!! | CTGTTTTTGATTTGAATACA+TGG | - | chr5_3:1297488-1297507 | Msa0790520:intron | 25.0% |
| ! | ACTTCAAAAATGATAGAGAT+AGG | - | chr5_3:1297700-1297719 | Msa0790520:intron | 25.0% |
| ! | TATCGACAAGATAATTGTAA+AGG | + | chr5_3:1298046-1298065 | None:intergenic | 25.0% |
| ! | GTACAAATTGCTATAAATAG+TGG | - | chr5_3:1298272-1298291 | Msa0790520:intron | 25.0% |
| ! | TCCAATATTCAAGATTATAC+TGG | - | chr5_3:1298431-1298450 | Msa0790520:intron | 25.0% |
| ! | ACCAGTATAATCTTGAATAT+TGG | + | chr5_3:1298435-1298454 | None:intergenic | 25.0% |
| ! | ATTGTTTCAACAACAGTATA+TGG | + | chr5_3:1299467-1299486 | None:intergenic | 25.0% |
| ACAAAGGTTTGCCAAAATTT+AGG | + | chr5_3:1295132-1295151 | None:intergenic | 30.0% | |
| !! | CCCAAAATCAAATTTTAACG+TGG | - | chr5_3:1295232-1295251 | Msa0790520:CDS | 30.0% |
| !! | CCCACGTTAAAATTTGATTT+TGG | + | chr5_3:1295236-1295255 | None:intergenic | 30.0% |
| GCAGCAATTTAAATTGAAAC+AGG | + | chr5_3:1295295-1295314 | None:intergenic | 30.0% | |
| ! | AGAGATCTTTTATATGCACT+TGG | - | chr5_3:1295737-1295756 | Msa0790520:CDS | 30.0% |
| CAGTGCAGGAAAAAAAAATT+AGG | + | chr5_3:1295971-1295990 | None:intergenic | 30.0% | |
| AAATTGGGAACTTCTAAGTT+TGG | + | chr5_3:1296186-1296205 | None:intergenic | 30.0% | |
| TTGTCTGAGTATGATATGTA+GGG | + | chr5_3:1296706-1296725 | None:intergenic | 30.0% | |
| ! | TAATCTCTACTAAGGTGTTT+AGG | + | chr5_3:1296750-1296769 | None:intergenic | 30.0% |
| !! | ATATGTTAATTTTGGTGGCA+TGG | - | chr5_3:1297047-1297066 | Msa0790520:CDS | 30.0% |
| TGAGAATGATCTATTGAAAC+AGG | - | chr5_3:1297085-1297104 | Msa0790520:CDS | 30.0% | |
| ! | TAAACCAATAAGAAGTGCAA+GGG | + | chr5_3:1297165-1297184 | None:intergenic | 30.0% |
| ! | TTAAACCAATAAGAAGTGCA+AGG | + | chr5_3:1297166-1297185 | None:intergenic | 30.0% |
| ! | GTTTAATTACAGGACTTGTT+GGG | - | chr5_3:1297180-1297199 | Msa0790520:CDS | 30.0% |
| ! | GTTGGTTGTAACATGATTTT+AGG | - | chr5_3:1297305-1297324 | Msa0790520:CDS | 30.0% |
| ! | TGGTTGTAACATGATTTTAG+GGG | - | chr5_3:1297307-1297326 | Msa0790520:CDS | 30.0% |
| CATTGATGCACATTCTATAT+TGG | - | chr5_3:1297412-1297431 | Msa0790520:intron | 30.0% | |
| !! | CAGATATTTGGTTCGATTTT+AGG | - | chr5_3:1297555-1297574 | Msa0790520:intron | 30.0% |
| TCAAAAATGATAGAGATAGG+AGG | - | chr5_3:1297703-1297722 | Msa0790520:intron | 30.0% | |
| CAAAAATGATAGAGATAGGA+GGG | - | chr5_3:1297704-1297723 | Msa0790520:intron | 30.0% | |
| GTTATATTTCTTGGAGTCAT+TGG | - | chr5_3:1298005-1298024 | Msa0790520:intron | 30.0% | |
| !! | AAGTCTCTTAGTTTTCTTTG+TGG | - | chr5_3:1298701-1298720 | Msa0790520:intron | 30.0% |
| TACTATTGTGAACAAGGTTA+AGG | - | chr5_3:1299328-1299347 | Msa0790520:intron | 30.0% | |
| !! | TATGGAGAAGTATTTGTGAT+TGG | + | chr5_3:1299449-1299468 | None:intergenic | 30.0% |
| AAATGTTAAACATTGTGCAG+AGG | - | chr5_3:1299652-1299671 | Msa0790520:five_prime_UTR | 30.0% | |
| TACGATCATCGATCAAAGAA+AGG | - | chr5_3:1294767-1294786 | Msa0790520:intron | 35.0% | |
| GAAAGGATTGATTAATGCCA+TGG | - | chr5_3:1294784-1294803 | Msa0790520:intron | 35.0% | |
| ! | ATTCTGCTTCTGAGAAGTAA+CGG | + | chr5_3:1294872-1294891 | None:intergenic | 35.0% |
| ACTCTGAATAGGGCAAATAT+TGG | + | chr5_3:1294927-1294946 | None:intergenic | 35.0% | |
| CGTAATCAAGACTCTGAATA+GGG | + | chr5_3:1294937-1294956 | None:intergenic | 35.0% | |
| TCGTAATCAAGACTCTGAAT+AGG | + | chr5_3:1294938-1294957 | None:intergenic | 35.0% | |
| ! | CAAGTTTAGAACACTATGAG+AGG | + | chr5_3:1296034-1296053 | None:intergenic | 35.0% |
| !! | TCAATTTCGGTGGACTAATT+TGG | - | chr5_3:1296478-1296497 | Msa0790520:CDS | 35.0% |
| CTTGTCTGAGTATGATATGT+AGG | + | chr5_3:1296707-1296726 | None:intergenic | 35.0% | |
| CGTTAGACTAATCTCTACTA+AGG | + | chr5_3:1296758-1296777 | None:intergenic | 35.0% | |
| AACGCGATAGTTAGAGAATT+TGG | + | chr5_3:1296822-1296841 | None:intergenic | 35.0% | |
| ATGATCTATTGAAACAGGAC+TGG | - | chr5_3:1297090-1297109 | Msa0790520:CDS | 35.0% | |
| !! | ACCAATATGTTGTTCTGAAG+TGG | - | chr5_3:1297138-1297157 | Msa0790520:CDS | 35.0% |
| TCCACTTCAGAACAACATAT+TGG | + | chr5_3:1297142-1297161 | None:intergenic | 35.0% | |
| GGTTTAATTACAGGACTTGT+TGG | - | chr5_3:1297179-1297198 | Msa0790520:CDS | 35.0% | |
| GTTGGGTTCTTTAATAACCT+TGG | - | chr5_3:1297197-1297216 | Msa0790520:CDS | 35.0% | |
| !! | TGTAACATGATTTTAGGGGT+TGG | - | chr5_3:1297311-1297330 | Msa0790520:CDS | 35.0% |
| ATTACGTACCTTGACAAAGA+GGG | + | chr5_3:1297447-1297466 | None:intergenic | 35.0% | |
| AATTACGTACCTTGACAAAG+AGG | + | chr5_3:1297448-1297467 | None:intergenic | 35.0% | |
| AGTTAACTAATGGCTTGAAG+TGG | - | chr5_3:1297528-1297547 | Msa0790520:intron | 35.0% | |
| GCTTGCATTGCTAATTTACT+CGG | - | chr5_3:1297630-1297649 | Msa0790520:intron | 35.0% | |
| ATTGCTAATTTACTCGGACA+AGG | - | chr5_3:1297636-1297655 | Msa0790520:intron | 35.0% | |
| TCTTATGCAATTCTGTCATC+AGG | - | chr5_3:1297887-1297906 | Msa0790520:intron | 35.0% | |
| CTTATGCAATTCTGTCATCA+GGG | - | chr5_3:1297888-1297907 | Msa0790520:intron | 35.0% | |
| ATATTTCTTGGAGTCATTGG+AGG | - | chr5_3:1298008-1298027 | Msa0790520:intron | 35.0% | |
| AATTAAGAGCTATAGTGCTG+CGG | - | chr5_3:1298205-1298224 | Msa0790520:intron | 35.0% | |
| ATAGCATATCACAGAACAGT+AGG | + | chr5_3:1298245-1298264 | None:intergenic | 35.0% | |
| GCTATAATACTATTGCTGCA+TGG | - | chr5_3:1298305-1298324 | Msa0790520:intron | 35.0% | |
| CTATTGCTGCATGGTAAAAT+TGG | - | chr5_3:1298314-1298333 | Msa0790520:intron | 35.0% | |
| !!! | GCAATTGACAACACTGATTT+TGG | - | chr5_3:1298362-1298381 | Msa0790520:intron | 35.0% |
| ACTTAATTGAATTGCAGGAG+AGG | - | chr5_3:1298408-1298427 | Msa0790520:intron | 35.0% | |
| TAACCTCCTGTATTCGATTT+GGG | - | chr5_3:1298472-1298491 | Msa0790520:intron | 35.0% | |
| TTGCTTGGAATTGTGACATA+CGG | - | chr5_3:1298732-1298751 | Msa0790520:intron | 35.0% | |
| TAGAGAAACTGTCATTCTCA+TGG | + | chr5_3:1298904-1298923 | None:intergenic | 35.0% | |
| !! | TAACTTGTTGATGCTACCAT+TGG | - | chr5_3:1298950-1298969 | Msa0790520:intron | 35.0% |
| !!! | GTGGCTGATTGTTTTAACAA+AGG | - | chr5_3:1299002-1299021 | Msa0790520:intron | 35.0% |
| AGGTGTTTATGATCAGATTG+TGG | - | chr5_3:1299022-1299041 | Msa0790520:intron | 35.0% | |
| ! | GTCCACTGTTTTCTTTTTGT+GGG | - | chr5_3:1299123-1299142 | Msa0790520:intron | 35.0% |
| ATCCCACAAAAAGAAAACAG+TGG | + | chr5_3:1299128-1299147 | None:intergenic | 35.0% | |
| ! | TTTTTGTGGGATCGAAAAAG+TGG | - | chr5_3:1299136-1299155 | Msa0790520:intron | 35.0% |
| ! | TTTTGTGGGATCGAAAAAGT+GGG | - | chr5_3:1299137-1299156 | Msa0790520:intron | 35.0% |
| TTGAAAGTGACAGAACATCA+CGG | - | chr5_3:1299176-1299195 | Msa0790520:intron | 35.0% | |
| ! | GATTTTGCAAAACCAGGTTT+GGG | - | chr5_3:1299356-1299375 | Msa0790520:intron | 35.0% |
| TTACTTACTCCTGGTTTCTT+AGG | + | chr5_3:1299551-1299570 | None:intergenic | 35.0% | |
| CAAAAGAGATTACTTACTCC+TGG | + | chr5_3:1299560-1299579 | None:intergenic | 35.0% | |
| TTTCATGCACGACTATATCT+TGG | - | chr5_3:1299707-1299726 | Msa0790520:five_prime_UTR | 35.0% | |
| TTCATGCACGACTATATCTT+GGG | - | chr5_3:1299708-1299727 | Msa0790520:five_prime_UTR | 35.0% | |
| TTTATTCATGTGGCTACTTG+CGG | + | chr5_3:1299755-1299774 | None:intergenic | 35.0% | |
| AGCAGACAAGAGACGATAAT+CGG | - | chr5_3:1294697-1294716 | Msa0790520:CDS | 40.0% | |
| GATTAATGCCATGGACATGA+TGG | - | chr5_3:1294793-1294812 | Msa0790520:intron | 40.0% | |
| ACTTTGCTTAAGGGACAATC+AGG | + | chr5_3:1295338-1295357 | None:intergenic | 40.0% | |
| AGTTTACTCGATTGGACTTG+CGG | - | chr5_3:1295432-1295451 | Msa0790520:CDS | 40.0% | |
| GTTCTACCCGCTATCAATTT+CGG | - | chr5_3:1296465-1296484 | Msa0790520:CDS | 40.0% | |
| TAGTCCACCGAAATTGATAG+CGG | + | chr5_3:1296475-1296494 | None:intergenic | 40.0% | |
| ATATTCTCTATGACGTCGCT+TGG | - | chr5_3:1296792-1296811 | Msa0790520:CDS | 40.0% | |
| TATTCTCTATGACGTCGCTT+GGG | - | chr5_3:1296793-1296812 | Msa0790520:CDS | 40.0% | |
| ATCTATTGAAACAGGACTGG+AGG | - | chr5_3:1297093-1297112 | Msa0790520:CDS | 40.0% | |
| CAGCAATATTCTCAACTCCA+AGG | + | chr5_3:1297217-1297236 | None:intergenic | 40.0% | |
| CTTGGAGTTGAGAATATTGC+TGG | - | chr5_3:1297215-1297234 | Msa0790520:CDS | 40.0% | |
| TTGCTTGAGCATGAGATTGT+TGG | + | chr5_3:1297258-1297277 | None:intergenic | 40.0% | |
| TAACTAATGGCTTGAAGTGG+TGG | - | chr5_3:1297531-1297550 | Msa0790520:intron | 40.0% | |
| !! | TGAAGTGGTGGACAGATATT+TGG | - | chr5_3:1297543-1297562 | Msa0790520:intron | 40.0% |
| !!! | AGTTGCTGCTGGTTTTATTG+TGG | - | chr5_3:1297578-1297597 | Msa0790520:intron | 40.0% |
| !!! | GTTGCTGCTGGTTTTATTGT+GGG | - | chr5_3:1297579-1297598 | Msa0790520:intron | 40.0% |
| !!! | TTGCTGCTGGTTTTATTGTG+GGG | - | chr5_3:1297580-1297599 | Msa0790520:intron | 40.0% |
| !!! | GGTTTTATTGTGGGGAAAGA+AGG | - | chr5_3:1297588-1297607 | Msa0790520:intron | 40.0% |
| !! | AATATCGACTCACCTGGAAA+TGG | - | chr5_3:1297670-1297689 | Msa0790520:intron | 40.0% |
| !! | CAGTAGTAGCAGTTGTTTTG+AGG | - | chr5_3:1297862-1297881 | Msa0790520:intron | 40.0% |
| AAATATAACTGCGAGGAGGT+CGG | + | chr5_3:1297994-1298013 | None:intergenic | 40.0% | |
| CAAGAAATATAACTGCGAGG+AGG | + | chr5_3:1297998-1298017 | None:intergenic | 40.0% | |
| CTCCTCGCAGTTATATTTCT+TGG | - | chr5_3:1297996-1298015 | Msa0790520:intron | 40.0% | |
| CTCCAAGAAATATAACTGCG+AGG | + | chr5_3:1298001-1298020 | None:intergenic | 40.0% | |
| GATAAAGTCCTTCGCACTTA+CGG | - | chr5_3:1298062-1298081 | Msa0790520:intron | 40.0% | |
| GTAACCTCCTGTATTCGATT+TGG | - | chr5_3:1298471-1298490 | Msa0790520:intron | 40.0% | |
| ! | AGATCATTGTAGTGGTTTGG+TGG | + | chr5_3:1298591-1298610 | None:intergenic | 40.0% |
| CTGAGATCATTGTAGTGGTT+TGG | + | chr5_3:1298594-1298613 | None:intergenic | 40.0% | |
| AACCATCGTTGAATAGGTTG+CGG | + | chr5_3:1298650-1298669 | None:intergenic | 40.0% | |
| ! | GAGACTTGATAGCTGAAATC+CGG | + | chr5_3:1298688-1298707 | None:intergenic | 40.0% |
| TTTGTGGCGATATACTTGCT+TGG | - | chr5_3:1298717-1298736 | Msa0790520:intron | 40.0% | |
| TGATCAGATTGTGGAGTTGA+AGG | - | chr5_3:1299031-1299050 | Msa0790520:intron | 40.0% | |
| GATCAGATTGTGGAGTTGAA+GGG | - | chr5_3:1299032-1299051 | Msa0790520:intron | 40.0% | |
| GTTGAAGGGACTACCTTATA+TGG | - | chr5_3:1299046-1299065 | Msa0790520:intron | 40.0% | |
| TCTGCATGTGCTTCCATATA+AGG | + | chr5_3:1299062-1299081 | None:intergenic | 40.0% | |
| GCCATACATGAGGAATTTAG+TGG | - | chr5_3:1299082-1299101 | Msa0790520:intron | 40.0% | |
| GCCACTAAATTCCTCATGTA+TGG | + | chr5_3:1299086-1299105 | None:intergenic | 40.0% | |
| TACATGAGGAATTTAGTGGC+AGG | - | chr5_3:1299086-1299105 | Msa0790520:intron | 40.0% | |
| ACATGAGGAATTTAGTGGCA+GGG | - | chr5_3:1299087-1299106 | Msa0790520:intron | 40.0% | |
| ! | GGTCCACTGTTTTCTTTTTG+TGG | - | chr5_3:1299122-1299141 | Msa0790520:intron | 40.0% |
| TTTGTGGGATCGAAAAAGTG+GGG | - | chr5_3:1299138-1299157 | Msa0790520:intron | 40.0% | |
| AGCACAAGACATTGTTCACT+AGG | - | chr5_3:1299285-1299304 | Msa0790520:intron | 40.0% | |
| GCACAAGACATTGTTCACTA+GGG | - | chr5_3:1299286-1299305 | Msa0790520:intron | 40.0% | |
| AGGGTCTACTATTGTGAACA+AGG | - | chr5_3:1299322-1299341 | Msa0790520:intron | 40.0% | |
| TTGTGAACAAGGTTAAGGCA+AGG | - | chr5_3:1299333-1299352 | Msa0790520:intron | 40.0% | |
| TGTGAACAAGGTTAAGGCAA+GGG | - | chr5_3:1299334-1299353 | Msa0790520:intron | 40.0% | |
| ! | GGATTTTGCAAAACCAGGTT+TGG | - | chr5_3:1299355-1299374 | Msa0790520:intron | 40.0% |
| GGATTTGGACATTTCACAAG+AGG | - | chr5_3:1299397-1299416 | Msa0790520:intron | 40.0% | |
| ! | CAAAAGCCGCTCTTCTTTTT+CGG | - | chr5_3:1299495-1299514 | Msa0790520:CDS | 40.0% |
| ! | AAAAGCCGCTCTTCTTTTTC+GGG | - | chr5_3:1299496-1299515 | Msa0790520:CDS | 40.0% |
| TTATTCATGTGGCTACTTGC+GGG | + | chr5_3:1299754-1299773 | None:intergenic | 40.0% | |
| TAGTGACTCCATCATGTCCA+TGG | + | chr5_3:1294804-1294823 | None:intergenic | 45.0% | |
| ! | CATGATGGAGTCACTAACAG+AGG | - | chr5_3:1294808-1294827 | Msa0790520:intron | 45.0% |
| TGGAGTCACTAACAGAGGAA+AGG | - | chr5_3:1294813-1294832 | Msa0790520:intron | 45.0% | |
| !! | GCAAATATTGGCTCCAACGA+TGG | + | chr5_3:1294915-1294934 | None:intergenic | 45.0% |
| AGTCTACGAGTCACTTAGCT+CGG | + | chr5_3:1295393-1295412 | None:intergenic | 45.0% | |
| !!! | TGTGTGCGTTTTTGGCTACT+AGG | - | chr5_3:1295760-1295779 | Msa0790520:CDS | 45.0% |
| TAGGGACTAATACTCAGTGC+AGG | + | chr5_3:1295985-1296004 | None:intergenic | 45.0% | |
| ! | AGTCCACCGAAATTGATAGC+GGG | + | chr5_3:1296474-1296493 | None:intergenic | 45.0% |
| ATTCTCTATGACGTCGCTTG+GGG | - | chr5_3:1296794-1296813 | Msa0790520:CDS | 45.0% | |
| ! | TTTGGTGGCATGGATTATGC+AGG | - | chr5_3:1297057-1297076 | Msa0790520:CDS | 45.0% |
| TGGACCCTTGCACTTCTTAT+TGG | - | chr5_3:1297158-1297177 | Msa0790520:CDS | 45.0% | |
| !! | GCTCAAGCAAAAGTATCACG+AGG | - | chr5_3:1297268-1297287 | Msa0790520:CDS | 45.0% |
| AGGAGCAATGTAAGCACACA+GGG | + | chr5_3:1297345-1297364 | None:intergenic | 45.0% | |
| TTGAGGTATGCTTTCACCTC+TGG | + | chr5_3:1297389-1297408 | None:intergenic | 45.0% | |
| ! | GAGGTGAAAGCATACCTCAA+CGG | - | chr5_3:1297389-1297408 | Msa0790520:intron | 45.0% |
| AATGTGCATCAATGCCGTTG+AGG | + | chr5_3:1297406-1297425 | None:intergenic | 45.0% | |
| CTTGACAAAGAGGGTAGATG+GGG | + | chr5_3:1297438-1297457 | None:intergenic | 45.0% | |
| CCTTGACAAAGAGGGTAGAT+GGG | + | chr5_3:1297439-1297458 | None:intergenic | 45.0% | |
| ACCTTGACAAAGAGGGTAGA+TGG | + | chr5_3:1297440-1297459 | None:intergenic | 45.0% | |
| !! | TCGATTTTAGGAGTTGCTGC+TGG | - | chr5_3:1297567-1297586 | Msa0790520:intron | 45.0% |
| CAAGCACCTGTATGAACCAT+GGG | + | chr5_3:1297615-1297634 | None:intergenic | 45.0% | |
| GCTAATTTACTCGGACAAGG+TGG | - | chr5_3:1297639-1297658 | Msa0790520:intron | 45.0% | |
| ! | GAAGTATCTGAGCCATTTCC+AGG | + | chr5_3:1297685-1297704 | None:intergenic | 45.0% |
| AGGAGGGATTTGATTACGTG+CGG | - | chr5_3:1297720-1297739 | Msa0790520:intron | 45.0% | |
| AACAACTGCTACTACTGCAG+TGG | + | chr5_3:1297859-1297878 | None:intergenic | 45.0% | |
| ATGCAATTCTGTCATCAGGG+AGG | - | chr5_3:1297891-1297910 | Msa0790520:intron | 45.0% | |
| AGATGTGGTCTGTTTGGAGA+AGG | - | chr5_3:1297918-1297937 | Msa0790520:intron | 45.0% | |
| GATGTGGTCTGTTTGGAGAA+GGG | - | chr5_3:1297919-1297938 | Msa0790520:intron | 45.0% | |
| ATGTGGTCTGTTTGGAGAAG+GGG | - | chr5_3:1297920-1297939 | Msa0790520:intron | 45.0% | |
| AATATAACTGCGAGGAGGTC+GGG | + | chr5_3:1297993-1298012 | None:intergenic | 45.0% | |
| AAGCCCAAATCGAATACAGG+AGG | + | chr5_3:1298478-1298497 | None:intergenic | 45.0% | |
| TGGAAGCCCAAATCGAATAC+AGG | + | chr5_3:1298481-1298500 | None:intergenic | 45.0% | |
| ! | GGCACACACTTTGATAGCAA+TGG | + | chr5_3:1298501-1298520 | None:intergenic | 45.0% |
| GTAGTGTATTGAGAAGCCTG+CGG | + | chr5_3:1298553-1298572 | None:intergenic | 45.0% | |
| GAGAGCTGAGATCATTGTAG+TGG | + | chr5_3:1298599-1298618 | None:intergenic | 45.0% | |
| ATCGTTGAATAGGTTGCGGA+TGG | + | chr5_3:1298646-1298665 | None:intergenic | 45.0% | |
| ATCCGCAACCTATTCAACGA+TGG | - | chr5_3:1298645-1298664 | Msa0790520:intron | 45.0% | |
| AGGTGGAACCATCGTTGAAT+AGG | + | chr5_3:1298656-1298675 | None:intergenic | 45.0% | |
| AATGAAGAGTCCAGAGGGAA+TGG | + | chr5_3:1298763-1298782 | None:intergenic | 45.0% | |
| TTCATTCCCGTCATACTTGC+CGG | - | chr5_3:1298777-1298796 | Msa0790520:intron | 45.0% | |
| ATACTTGCCGGAGCTTCTTA+CGG | - | chr5_3:1298789-1298808 | Msa0790520:intron | 45.0% | |
| CTTCTTACGGGCGTCTTATA+GGG | - | chr5_3:1298802-1298821 | Msa0790520:intron | 45.0% | |
| !! | TCCATTCACAGCTCTGGATA+CGG | - | chr5_3:1298836-1298855 | Msa0790520:intron | 45.0% |
| GATGCTACCATTGGTCATGT+TGG | - | chr5_3:1298959-1298978 | Msa0790520:intron | 45.0% | |
| AGGAGAACCAACATGACCAA+TGG | + | chr5_3:1298969-1298988 | None:intergenic | 45.0% | |
| !! | TCTCCTCGTTTCTAAGACAG+TGG | - | chr5_3:1298983-1299002 | Msa0790520:intron | 45.0% |
| CATGAGGAATTTAGTGGCAG+GGG | - | chr5_3:1299088-1299107 | Msa0790520:intron | 45.0% | |
| AAAGGAGGCTCATCAACTAC+TGG | + | chr5_3:1299206-1299225 | None:intergenic | 45.0% | |
| !! | AGTTGATGAGCCTCCTTTGA+CGG | - | chr5_3:1299208-1299227 | Msa0790520:intron | 45.0% |
| !! | GGTGTTGAGGTCTCATCTTT+TGG | - | chr5_3:1299253-1299272 | Msa0790520:intron | 45.0% |
| AGACATTGTTCACTAGGGAG+AGG | - | chr5_3:1299291-1299310 | Msa0790520:intron | 45.0% | |
| GACATTGTTCACTAGGGAGA+GGG | - | chr5_3:1299292-1299311 | Msa0790520:intron | 45.0% | |
| ! | GCAAGGGATTTTGCAAAACC+AGG | - | chr5_3:1299350-1299369 | Msa0790520:intron | 45.0% |
| CAAAACCAGGTTTGGGAAGA+GGG | - | chr5_3:1299363-1299382 | Msa0790520:intron | 45.0% | |
| AGGTTTGGGAAGAGGGATAA+GGG | - | chr5_3:1299370-1299389 | Msa0790520:intron | 45.0% | |
| GGACATTTCACAAGAGGAGA+TGG | - | chr5_3:1299403-1299422 | Msa0790520:intron | 45.0% | |
| AAGCTCCCGAAAAAGAAGAG+CGG | + | chr5_3:1299504-1299523 | None:intergenic | 45.0% | |
| CTAGTTGTGCCTAAGAAACC+AGG | - | chr5_3:1299539-1299558 | Msa0790520:CDS | 45.0% | |
| CTTGTCAGGATCCCAACAAT+TGG | + | chr5_3:1299681-1299700 | None:intergenic | 45.0% | |
| CAATTGTTGGGATCCTGACA+AGG | - | chr5_3:1299679-1299698 | Msa0790520:five_prime_UTR | 45.0% | |
| GCATGAAATCATGCCTTGTC+AGG | + | chr5_3:1299695-1299714 | None:intergenic | 45.0% | |
| ! | TACTTGCGGGGATTCAAGTT+GGG | + | chr5_3:1299741-1299760 | None:intergenic | 45.0% |
| TATTCATGTGGCTACTTGCG+GGG | + | chr5_3:1299753-1299772 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTCAAA+AGG | - | chr5_3:1296436-1296455 | Msa0790520:CDS | 5.0% |
| !! | AATATTAGTTATAATAATAA+AGG | + | chr5_3:1299629-1299648 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGGATCGA+AGG | - | chr5_3:1294670-1294689 | Msa0790520:exon | 50.0% | |
| ! | AACGATGGCGAGTTGAGAAG+AGG | + | chr5_3:1294900-1294919 | None:intergenic | 50.0% |
| TCTTCTCAACTCGCCATCGT+TGG | - | chr5_3:1294899-1294918 | Msa0790520:CDS | 50.0% | |
| !!! | GCACTTGGTGTGTGCGTTTT+TGG | - | chr5_3:1295752-1295771 | Msa0790520:CDS | 50.0% |
| !! | TTGGCTACTAGGCTCTGAGA+AGG | - | chr5_3:1295771-1295790 | Msa0790520:CDS | 50.0% |
| CTACCCGCTATCAATTTCGG+TGG | - | chr5_3:1296468-1296487 | Msa0790520:CDS | 50.0% | |
| TTCTCTATGACGTCGCTTGG+GGG | - | chr5_3:1296795-1296814 | Msa0790520:CDS | 50.0% | |
| GGACTGGAGGTCAAGAACAA+AGG | - | chr5_3:1297106-1297125 | Msa0790520:CDS | 50.0% | |
| ! | GAGGCATTTGCAGTGTACGT+TGG | - | chr5_3:1297287-1297306 | Msa0790520:CDS | 50.0% |
| CAGGAGCAATGTAAGCACAC+AGG | + | chr5_3:1297346-1297365 | None:intergenic | 50.0% | |
| CCCATCTACCCTCTTTGTCA+AGG | - | chr5_3:1297436-1297455 | Msa0790520:intron | 50.0% | |
| GAAGGACCCATGGTTCATAC+AGG | - | chr5_3:1297606-1297625 | Msa0790520:intron | 50.0% | |
| GCAAGCACCTGTATGAACCA+TGG | + | chr5_3:1297616-1297635 | None:intergenic | 50.0% | |
| !! | CGCGTAAATATCGACTCACC+TGG | - | chr5_3:1297664-1297683 | Msa0790520:intron | 50.0% |
| TGCGAACAGAACACCACCAA+CGG | + | chr5_3:1297781-1297800 | None:intergenic | 50.0% | |
| CACTCGAAGAAGCAGCTTCA+TGG | - | chr5_3:1297799-1297818 | Msa0790520:intron | 50.0% | |
| TCGAAGAAGCAGCTTCATGG+TGG | - | chr5_3:1297802-1297821 | Msa0790520:intron | 50.0% | |
| AAGAAGCAGCTTCATGGTGG+AGG | - | chr5_3:1297805-1297824 | Msa0790520:intron | 50.0% | |
| CAATTCTGTCATCAGGGAGG+AGG | - | chr5_3:1297894-1297913 | Msa0790520:intron | 50.0% | |
| TGTGGTCTGTTTGGAGAAGG+GGG | - | chr5_3:1297921-1297940 | Msa0790520:intron | 50.0% | |
| TGGAGTCATTGGAGGTCTCA+TGG | - | chr5_3:1298016-1298035 | Msa0790520:intron | 50.0% | |
| GGAGTCATTGGAGGTCTCAT+GGG | - | chr5_3:1298017-1298036 | Msa0790520:intron | 50.0% | |
| TTATAGCGCCGTAAGTGCGA+AGG | + | chr5_3:1298073-1298092 | None:intergenic | 50.0% | |
| TCAAAGTGTGTGCCATGTCC+AGG | - | chr5_3:1298507-1298526 | Msa0790520:intron | 50.0% | |
| CAAAGTGTGTGCCATGTCCA+GGG | - | chr5_3:1298508-1298527 | Msa0790520:intron | 50.0% | |
| AAAGTGTGTGCCATGTCCAG+GGG | - | chr5_3:1298509-1298528 | Msa0790520:intron | 50.0% | |
| TATTGAGAAGCCTGCGGTTG+GGG | + | chr5_3:1298547-1298566 | None:intergenic | 50.0% | |
| GTATTGAGAAGCCTGCGGTT+GGG | + | chr5_3:1298548-1298567 | None:intergenic | 50.0% | |
| TGTATTGAGAAGCCTGCGGT+TGG | + | chr5_3:1298549-1298568 | None:intergenic | 50.0% | |
| ACGGGAATGAAGAGTCCAGA+GGG | + | chr5_3:1298768-1298787 | None:intergenic | 50.0% | |
| AGAAGCTCCGGCAAGTATGA+CGG | + | chr5_3:1298787-1298806 | None:intergenic | 50.0% | |
| TACTTGCCGGAGCTTCTTAC+GGG | - | chr5_3:1298790-1298809 | Msa0790520:intron | 50.0% | |
| GCTTCTTACGGGCGTCTTAT+AGG | - | chr5_3:1298801-1298820 | Msa0790520:intron | 50.0% | |
| GCGTCTTATAGGGACTGTGA+TGG | - | chr5_3:1298812-1298831 | Msa0790520:intron | 50.0% | |
| !! | CCATTCACAGCTCTGGATAC+GGG | - | chr5_3:1298837-1298856 | Msa0790520:intron | 50.0% |
| ! | ACGGGTTTGTTTGCTCTCCT+TGG | - | chr5_3:1298855-1298874 | Msa0790520:intron | 50.0% |
| !! | TCATTCTCATGGTGCCACCA+AGG | + | chr5_3:1298893-1298912 | None:intergenic | 50.0% |
| CAGCCACTGTCTTAGAAACG+AGG | + | chr5_3:1298989-1299008 | None:intergenic | 50.0% | |
| CACATGCAGAGCCATACATG+AGG | - | chr5_3:1299072-1299091 | Msa0790520:intron | 50.0% | |
| GCAAAACCAGGTTTGGGAAG+AGG | - | chr5_3:1299362-1299381 | Msa0790520:intron | 50.0% | |
| CTTATCCCTCTTCCCAAACC+TGG | + | chr5_3:1299371-1299390 | None:intergenic | 50.0% | |
| CAGGTTTGGGAAGAGGGATA+AGG | - | chr5_3:1299369-1299388 | Msa0790520:intron | 50.0% | |
| TTTGGGAAGAGGGATAAGGG+TGG | - | chr5_3:1299373-1299392 | Msa0790520:intron | 50.0% | |
| AGGGATAAGGGTGGAGGATT+TGG | - | chr5_3:1299382-1299401 | Msa0790520:intron | 50.0% | |
| !!! | GCTCTTCTTTTTCGGGAGCT+TGG | - | chr5_3:1299503-1299522 | Msa0790520:CDS | 50.0% |
| !!! | TTTTTCGGGAGCTTGGACTC+AGG | - | chr5_3:1299510-1299529 | Msa0790520:CDS | 50.0% |
| TGCAGAGGCCTCCAATTGTT+GGG | - | chr5_3:1299667-1299686 | Msa0790520:five_prime_UTR | 50.0% | |
| GTCAGGATCCCAACAATTGG+AGG | + | chr5_3:1299678-1299697 | None:intergenic | 50.0% | |
| !! | ACTTGCGGGGATTCAAGTTG+GGG | + | chr5_3:1299740-1299759 | None:intergenic | 50.0% |
| CTACTTGCGGGGATTCAAGT+TGG | + | chr5_3:1299742-1299761 | None:intergenic | 50.0% | |
| GCAGAGAGAGAGAGAGAGAG+AGG | - | chr5_3:1294662-1294681 | Msa0790520:three_prime_UTR | 55.0% | |
| TCTCTATGACGTCGCTTGGG+GGG | - | chr5_3:1296796-1296815 | Msa0790520:CDS | 55.0% | |
| TACATTGCTCCTGCAGCTGC+TGG | - | chr5_3:1297353-1297372 | Msa0790520:intron | 55.0% | |
| TGTGGGGAAAGAAGGACCCA+TGG | - | chr5_3:1297596-1297615 | Msa0790520:intron | 55.0% | |
| GAACAGAACACCACCAACGG+GGG | + | chr5_3:1297778-1297797 | None:intergenic | 55.0% | |
| CGAACAGAACACCACCAACG+GGG | + | chr5_3:1297779-1297798 | None:intergenic | 55.0% | |
| GCGAACAGAACACCACCAAC+GGG | + | chr5_3:1297780-1297799 | None:intergenic | 55.0% | |
| GGAGGCAGATGTGGTCTGTT+TGG | - | chr5_3:1297912-1297931 | Msa0790520:intron | 55.0% | |
| AAATCCGGCGTTAGCAGAGG+TGG | + | chr5_3:1298673-1298692 | None:intergenic | 55.0% | |
| CTGAAATCCGGCGTTAGCAG+AGG | + | chr5_3:1298676-1298695 | None:intergenic | 55.0% | |
| !! | TACGGTGTTGCCATTCCCTC+TGG | - | chr5_3:1298750-1298769 | Msa0790520:intron | 55.0% |
| GACGGGAATGAAGAGTCCAG+AGG | + | chr5_3:1298769-1298788 | None:intergenic | 55.0% | |
| GAAGCTCCGGCAAGTATGAC+GGG | + | chr5_3:1298786-1298805 | None:intergenic | 55.0% | |
| AAGACGCCCGTAAGAAGCTC+CGG | + | chr5_3:1298799-1298818 | None:intergenic | 55.0% | |
| GATGGCTCCATTCACAGCTC+TGG | - | chr5_3:1298830-1298849 | Msa0790520:intron | 55.0% | |
| CCCGTATCCAGAGCTGTGAA+TGG | + | chr5_3:1298840-1298859 | None:intergenic | 55.0% | |
| CAAGGAAAGATGCGGCTCCA+AGG | + | chr5_3:1298875-1298894 | None:intergenic | 55.0% | |
| CTTGGAGCCGCATCTTTCCT+TGG | - | chr5_3:1298873-1298892 | Msa0790520:intron | 55.0% | |
| ! | GGTGCCACCAAGGAAAGATG+CGG | + | chr5_3:1298883-1298902 | None:intergenic | 55.0% |
| !! | GTGGCAGGGGATGTTGTTTC+TGG | - | chr5_3:1299101-1299120 | Msa0790520:intron | 55.0% |
| !! | AACTCGGGAGCATCCGTCAA+AGG | + | chr5_3:1299224-1299243 | None:intergenic | 55.0% |
| AACACCAACCCGCACAACTC+GGG | + | chr5_3:1299239-1299258 | None:intergenic | 55.0% | |
| CAACACCAACCCGCACAACT+CGG | + | chr5_3:1299240-1299259 | None:intergenic | 55.0% | |
| !! | AGTTGTGCGGGTTGGTGTTG+AGG | - | chr5_3:1299240-1299259 | Msa0790520:intron | 55.0% |
| ACTAGGGAGAGGGTGATGAC+AGG | - | chr5_3:1299302-1299321 | Msa0790520:intron | 55.0% | |
| CTAGGGAGAGGGTGATGACA+GGG | - | chr5_3:1299303-1299322 | Msa0790520:intron | 55.0% | |
| GTGCAGAGGCCTCCAATTGT+TGG | - | chr5_3:1299666-1299685 | Msa0790520:five_prime_UTR | 55.0% | |
| !! | TGCTGGCTCTGGCATACCAG+AGG | - | chr5_3:1297370-1297389 | Msa0790520:intron | 60.0% |
| ATTACGTGCGGTGCAGCTGC+TGG | - | chr5_3:1297732-1297751 | Msa0790520:intron | 60.0% | |
| !! | GGTGGAGGAGTGCTCTTCTG+TGG | - | chr5_3:1297820-1297839 | Msa0790520:intron | 60.0% |
| CATCAGGGAGGAGGCAGATG+TGG | - | chr5_3:1297903-1297922 | Msa0790520:intron | 60.0% | |
| GTTGCGGATGGCATCGTCGT+TGG | + | chr5_3:1298634-1298653 | None:intergenic | 60.0% | |
| GGTTCCACCTCTGCTAACGC+CGG | - | chr5_3:1298666-1298685 | Msa0790520:intron | 60.0% | |
| GGAGCCGCATCTTTCCTTGG+TGG | - | chr5_3:1298876-1298895 | Msa0790520:intron | 60.0% | |
| !! | TCGGGAGCATCCGTCAAAGG+AGG | + | chr5_3:1299221-1299240 | None:intergenic | 60.0% |
| ACGGATGCTCCCGAGTTGTG+CGG | - | chr5_3:1299227-1299246 | Msa0790520:intron | 60.0% | |
| GGGAAGAGGGATAAGGGTGG+AGG | - | chr5_3:1299376-1299395 | Msa0790520:intron | 60.0% | |
| ATGCCAGAGCCAGCAGCTGC+AGG | + | chr5_3:1297365-1297384 | None:intergenic | 65.0% | |
| GAACACCACCAACGGGGGCA+CGG | + | chr5_3:1297773-1297792 | None:intergenic | 65.0% | |
| AGGTCGGGTGTGGTGTAGGC+AGG | + | chr5_3:1297978-1297997 | None:intergenic | 65.0% | |
| GAGGAGGTCGGGTGTGGTGT+AGG | + | chr5_3:1297982-1298001 | None:intergenic | 65.0% | |
| AACTGCGAGGAGGTCGGGTG+TGG | + | chr5_3:1297988-1298007 | None:intergenic | 65.0% | |
| CTGGGACACTCCCCTGGACA+TGG | + | chr5_3:1298522-1298541 | None:intergenic | 65.0% | |
| AAGCCTGCGGTTGGGGAGCT+GGG | + | chr5_3:1298540-1298559 | None:intergenic | 65.0% | |
| CGGATGCTCCCGAGTTGTGC+GGG | - | chr5_3:1299228-1299247 | Msa0790520:intron | 65.0% | |
| TGCTCCCGAGTTGTGCGGGT+TGG | - | chr5_3:1299232-1299251 | Msa0790520:intron | 65.0% | |
| !! | GCTCCTGCAGCTGCTGGCTC+TGG | - | chr5_3:1297359-1297378 | Msa0790520:intron | 70.0% |
| ! | AACGGGGGCACGGAAGGCTG+CGG | + | chr5_3:1297763-1297782 | None:intergenic | 70.0% |
| ! | ACCACCAACGGGGGCACGGA+AGG | + | chr5_3:1297769-1297788 | None:intergenic | 70.0% |
| TGTCCCAGCTCCCCAACCGC+AGG | - | chr5_3:1298534-1298553 | Msa0790520:intron | 70.0% | |
| GAAGCCTGCGGTTGGGGAGC+TGG | + | chr5_3:1298541-1298560 | None:intergenic | 70.0% | |
| GCAGCCTTCCGTGCCCCCGT+TGG | - | chr5_3:1297762-1297781 | Msa0790520:intron | 75.0% | |
| GCCTTCCGTGCCCCCGTTGG+TGG | - | chr5_3:1297765-1297784 | Msa0790520:intron | 75.0% | |
| GGGGAGCTGGGACACTCCCC+TGG | + | chr5_3:1298528-1298547 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 1294634 | 1299816 | 1294634 | ID=Msa0790520;Name=Msa0790520 |
| chr5_3 | mRNA | 1294634 | 1299816 | 1294634 | ID=Msa0790520-mRNA-1;Parent=Msa0790520;Name=Msa0790520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169|1|0.8|1|1|1|5|55|766 |
| chr5_3 | exon | 1294634 | 1294778 | 1294634 | ID=Msa0790520-mRNA-1:exon:495;Parent=Msa0790520-mRNA-1 |
| chr5_3 | exon | 1294888 | 1296025 | 1294888 | ID=Msa0790520-mRNA-1:exon:494;Parent=Msa0790520-mRNA-1 |
| chr5_3 | exon | 1296354 | 1296892 | 1296354 | ID=Msa0790520-mRNA-1:exon:493;Parent=Msa0790520-mRNA-1 |
| chr5_3 | exon | 1296993 | 1297371 | 1296993 | ID=Msa0790520-mRNA-1:exon:492;Parent=Msa0790520-mRNA-1 |
| chr5_3 | exon | 1299493 | 1299816 | 1299493 | ID=Msa0790520-mRNA-1:exon:491;Parent=Msa0790520-mRNA-1 |
| chr5_3 | five_prime_UTR | 1299648 | 1299816 | 1299648 | ID=Msa0790520-mRNA-1:five_prime_utr;Parent=Msa0790520-mRNA-1 |
| chr5_3 | CDS | 1299493 | 1299647 | 1299493 | ID=Msa0790520-mRNA-1:cds;Parent=Msa0790520-mRNA-1 |
| chr5_3 | CDS | 1296993 | 1297371 | 1296993 | ID=Msa0790520-mRNA-1:cds;Parent=Msa0790520-mRNA-1 |
| chr5_3 | CDS | 1296354 | 1296892 | 1296354 | ID=Msa0790520-mRNA-1:cds;Parent=Msa0790520-mRNA-1 |
| chr5_3 | CDS | 1294888 | 1296025 | 1294888 | ID=Msa0790520-mRNA-1:cds;Parent=Msa0790520-mRNA-1 |
| chr5_3 | CDS | 1294689 | 1294778 | 1294689 | ID=Msa0790520-mRNA-1:cds;Parent=Msa0790520-mRNA-1 |
| chr5_3 | three_prime_UTR | 1294634 | 1294688 | 1294634 | ID=Msa0790520-mRNA-1:three_prime_utr;Parent=Msa0790520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
