AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797240 MtrunA17_Chr5g0400471 89.802 353 9 2 12 337 113 465 0.0 640
Msa0797240 MtrunA17_Chr4g0054741 77.341 331 60 5 12 337 214 534 4.48e-175 496
Msa0797240 MtrunA17_Chr4g0054771 74.164 329 70 4 12 335 66 384 1.49e-164 464
Msa0797240 MtrunA17_Chr1g0212201 58.951 324 127 3 19 337 214 536 1.54e-121 360
Msa0797240 MtrunA17_Chr1g0212251 59.077 325 125 5 19 337 210 532 9.99e-116 345
Msa0797240 MtrunA17_Chr1g0212291 56.000 325 134 4 19 335 211 534 2.08e-114 342
Msa0797240 MtrunA17_Chr1g0210101 33.013 312 175 9 19 308 283 582 3.41e-35 135
Msa0797240 MtrunA17_Chr6g0484691 30.030 333 177 12 19 308 257 576 9.42e-35 133
Msa0797240 MtrunA17_Chr8g0390901 29.846 325 188 10 19 308 126 445 1.09e-32 126
Msa0797240 MtrunA17_Chr8g0390931 28.834 326 183 7 19 308 231 543 4.63e-32 125
Msa0797240 MtrunA17_Chr8g0390921 35.484 186 109 4 19 195 230 413 1.80e-29 118
Msa0797240 MtrunA17_Chr2g0321971 37.857 140 82 3 19 158 213 347 1.89e-25 106
Msa0797240 MtrunA17_Chr4g0025591 40.667 150 85 2 19 167 214 360 2.84e-25 105
Msa0797240 MtrunA17_Chr7g0267471 32.749 171 105 3 19 186 215 378 5.26e-24 102
Msa0797240 MtrunA17_Chr1g0188871 33.333 171 107 3 19 188 219 383 9.12e-23 98.6
Msa0797240 MtrunA17_Chr1g0188881 33.136 169 107 2 19 186 225 388 3.74e-21 94.0
Msa0797240 MtrunA17_Chr2g0321961 32.749 171 111 3 19 188 210 377 4.49e-21 93.6
Msa0797240 MtrunA17_Chr7g0259731 30.065 153 88 4 20 164 231 372 6.09e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797240 AT4G17970.1 58.601 343 98 8 19 322 212 549 2.35e-125 371
Msa0797240 AT5G46610.3 55.891 331 110 5 19 322 167 488 7.91e-113 337
Msa0797240 AT5G46610.2 55.891 331 110 5 19 322 190 511 1.45e-112 337
Msa0797240 AT5G46610.1 55.891 331 110 5 19 322 214 535 3.02e-112 337
Msa0797240 AT5G46600.1 55.556 315 113 6 19 309 215 526 7.03e-104 315
Msa0797240 AT3G18440.1 32.229 332 187 9 19 318 250 575 6.17e-36 137
Msa0797240 AT1G18420.2 30.060 336 177 9 19 308 171 494 6.91e-32 125
Msa0797240 AT1G18420.1 30.060 336 177 9 19 308 254 577 7.56e-32 125
Msa0797240 AT1G25480.1 29.630 324 182 9 19 308 230 541 5.04e-28 114
Msa0797240 AT2G17470.2 28.221 326 180 10 19 308 224 531 9.26e-28 114
Msa0797240 AT2G17470.1 28.221 326 180 10 19 308 202 509 1.15e-27 113
Msa0797240 AT1G68600.1 29.448 326 179 10 19 308 219 529 1.70e-26 110
Msa0797240 AT4G00910.1 33.140 172 113 2 19 188 230 401 1.07e-25 107
Msa0797240 AT1G08440.1 38.194 144 85 2 19 160 186 327 2.65e-23 100
Msa0797240 AT1G08430.1 34.503 171 107 3 19 186 189 357 1.93e-21 95.5
Msa0797240 AT3G11680.2 31.176 170 110 2 19 186 211 375 1.25e-19 90.1
Msa0797240 AT3G11680.1 31.176 170 110 2 19 186 209 373 1.30e-19 89.7
Msa0797240 AT2G27240.2 32.000 175 109 5 19 191 186 352 2.14e-15 77.4
Msa0797240 AT2G27240.1 34.109 129 79 2 63 191 256 378 7.78e-15 75.9

Find 68 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTATAACCTTTGTATA+TGG 0.174550 5_3:+9311776 Msa0797230:three_prime_UTR
GAGACGAGGTTGAGACTTTA+TGG 0.233252 5_3:+9311071 Msa0797230:three_prime_UTR
TCTCAACCTCGTCTCTTCTT+AGG 0.247691 5_3:-9311063 Msa0797240:CDS
TGTGGAAACAGTTGCAAAAT+TGG 0.260709 5_3:-9310770 Msa0797240:CDS
ACTCTTCTGCATTGCTTGAT+TGG 0.276649 5_3:-9310927 Msa0797240:CDS
CAAAGGTTATAAGAATGTTT+TGG 0.284044 5_3:-9311769 Msa0797240:CDS
AGATGATCGGAGAGTATTTC+GGG 0.298853 5_3:+9311123 Msa0797230:three_prime_UTR
TTGCATACCCTCTATAGATT+TGG 0.312634 5_3:+9312162 None:intergenic
TGCATGGTTGTGTTTGTGTT+TGG 0.345549 5_3:+9311038 Msa0797230:three_prime_UTR
GTTGGGAGCCAAGGCATTCT+AGG 0.347134 5_3:-9311616 Msa0797240:CDS
AAGATGATCGGAGAGTATTT+CGG 0.350796 5_3:+9311122 Msa0797230:three_prime_UTR
CTGTTTGAGATCAGAAATTC+AGG 0.351569 5_3:-9311507 Msa0797240:intron
CCAGGCGTTGCATGCAAGTT+GGG 0.364061 5_3:-9311633 Msa0797240:intron
TTCTTATAACCTTTGTATAT+GGG 0.365139 5_3:+9311777 Msa0797230:three_prime_UTR
CAACCACGGTGTAGCCGAAT+TGG 0.384589 5_3:+9311540 Msa0797230:three_prime_UTR
TCTACTGCTTTCAAGCTTGA+AGG 0.394471 5_3:-9312190 Msa0797240:CDS
ATTGAGGAAGTTGAAGAACT+TGG 0.400564 5_3:-9310739 Msa0797240:CDS
TGTTTGTCCTACCTTTATCA+TGG 0.433297 5_3:+9312504 None:intergenic
GCGACAGTTTCTTATGCTGT+TGG 0.449688 5_3:+9311155 Msa0797230:three_prime_UTR
ACTAACCAGTGTTTCATCAA+TGG 0.450544 5_3:+9311737 Msa0797230:intron
CGGAACAATTTGCCTTCTCA+TGG 0.454690 5_3:-9310637 Msa0797240:CDS
AAAATTGGATCTTGTTATTG+AGG 0.463462 5_3:-9310755 Msa0797240:CDS
TCATCTTCATGAAGCTCTAC+AGG 0.467841 5_3:-9311106 Msa0797240:CDS
GGAGCTGTTCTTCGCCAATT+CGG 0.468447 5_3:-9311554 Msa0797240:CDS
AACATGGCTCTAACTGATCT+TGG 0.468885 5_3:+9311234 Msa0797230:three_prime_UTR
TTGAGGAAGTTGAAGAACTT+GGG 0.474676 5_3:-9310738 Msa0797240:CDS
TCAGATGATTTGATATCTCC+AGG 0.475473 5_3:+9311804 Msa0797230:three_prime_UTR
AAAGATGCAAAAGCAGCAAA+AGG 0.479326 5_3:+9310796 Msa0797230:three_prime_UTR
TGCTTTAAAGAGTTTAGAGC+TGG 0.480144 5_3:-9310706 Msa0797240:CDS
TACACCGTGGTTGCTCTACA+TGG 0.480998 5_3:-9311530 Msa0797240:CDS
TGTTCAAGGATCCATGCATA+AGG 0.481436 5_3:-9311215 Msa0797240:CDS
ATCAGTTAGAGCCATGTTCA+AGG 0.486726 5_3:-9311229 Msa0797240:CDS
GGTAGACATGGAAAAGGCTC+TGG 0.488167 5_3:-9310976 Msa0797240:CDS
GCCAGGCGTTGCATGCAAGT+TGG 0.489802 5_3:-9311634 Msa0797240:intron
TGCATGCAAGTTGGGAGCCA+AGG 0.493195 5_3:-9311625 Msa0797240:CDS
ATATCTCTATCATATGCATA+TGG 0.494447 5_3:+9312536 None:intergenic
AGGTCTTGCCAAATCTATAG+AGG 0.499136 5_3:-9312170 Msa0797240:CDS
GTTTGAGCATGTTGTTTGCA+TGG 0.505188 5_3:+9311022 Msa0797230:three_prime_UTR
TGGCAGCAATATGTAAAAGT+TGG 0.518460 5_3:-9311575 Msa0797240:CDS
GTCTATTCAATTCCATGAGA+AGG 0.518933 5_3:+9310625 Msa0797230:three_prime_UTR
ATGCATAAGGGTTGCAGCAG+AGG 0.527389 5_3:-9311202 Msa0797240:CDS
TATGGAGAAATTGATAGCCC+TGG 0.532775 5_3:-9311822 Msa0797240:CDS
TGAAAGCAGTAGAATTATGT+AGG 0.536646 5_3:+9312200 None:intergenic
GTTCAAGGATCCATGCATAA+GGG 0.544118 5_3:-9311214 Msa0797240:CDS
AAACTAGCTGCTGCACAAGT+TGG 0.544612 5_3:-9311003 Msa0797240:CDS
AAAATCCATTGATGAAACAC+TGG 0.544964 5_3:-9311742 Msa0797240:intron
TGACAGTACCTAGAATGCCT+TGG 0.545491 5_3:+9311608 Msa0797230:three_prime_UTR
CAAGTTGGTCAAGGTAGACA+TGG 0.553561 5_3:-9310988 Msa0797240:CDS
GGTCAAGGTAGACATGGAAA+AGG 0.558508 5_3:-9310982 Msa0797240:CDS
TAGAGCTTCATGAAGATGAT+CGG 0.579444 5_3:+9311110 Msa0797230:three_prime_UTR
TCTGCTGCAACCCTTATGCA+TGG 0.600193 5_3:+9311204 Msa0797230:three_prime_UTR
TGCAGTCGAAGGAAAACGAA+AGG 0.603800 5_3:-9310882 Msa0797240:CDS
AGATTCATTAATGCAGTCGA+AGG 0.607766 5_3:-9310893 Msa0797240:CDS
AGAGTATTTCGGGAGAGCAA+TGG 0.619871 5_3:+9311133 Msa0797230:three_prime_UTR
GCTGCTGCACAAGTTGGTCA+AGG 0.626016 5_3:-9310997 Msa0797240:CDS
GGTACTGTCACAAATTTCCA+TGG 0.628747 5_3:-9311595 Msa0797240:CDS
GGTCTTGCCAAATCTATAGA+GGG 0.633364 5_3:-9312169 Msa0797240:intron
CAGATGATTTGATATCTCCA+GGG 0.645408 5_3:+9311805 Msa0797230:three_prime_UTR
TGGAGATATCAAATCATCTG+AGG 0.646682 5_3:-9311802 Msa0797240:CDS
TCTGAGGATCCCATATACAA+AGG 0.659738 5_3:-9311786 Msa0797240:CDS
TATGCATGGATCCTTGAACA+TGG 0.660343 5_3:+9311218 Msa0797230:three_prime_UTR
CACTAGTCTTGAATTCTCTG+AGG 0.665482 5_3:-9310824 Msa0797240:CDS
TTCCGCGACACATCAACTCG+AGG 0.668844 5_3:+9310655 Msa0797230:three_prime_UTR
AACCTCGAGTTGATGTGTCG+CGG 0.672079 5_3:-9310657 Msa0797240:CDS
ACAGCCATGTAGAGCAACCA+CGG 0.689758 5_3:+9311526 Msa0797230:three_prime_UTR
TCGCCAATTCGGCTACACCG+TGG 0.698242 5_3:-9311543 Msa0797240:CDS
TTGGAACCTAAGAAGAGACG+AGG 0.710005 5_3:+9311057 Msa0797230:three_prime_UTR
TGATATTGTTGTGACTTGTG+AGG 0.758451 5_3:-9310680 Msa0797240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! NNNNNNNNTTAAAAAAGCAA+TGG + chr5_3:9310849-9310868 Msa0797230:three_prime_UTR 10.0%
!! NNNNNNNNTTAAAAAAGCAA+TGG + chr5_3:9310849-9310868 Msa0797230:three_prime_UTR 10.0%
!! CTGTTAAATATATTTAGTAA+CGG - chr5_3:9311041-9311060 Msa0797240:CDS 15.0%
!! TAATGAATATATGTTATAAC+AGG + chr5_3:9311895-9311914 None:intergenic 15.0%
!! CTGTTAAATATATTTAGTAA+CGG - chr5_3:9311041-9311060 Msa0797240:CDS 15.0%
!! TAATGAATATATGTTATAAC+AGG + chr5_3:9311895-9311914 None:intergenic 15.0%
!!! TGTGTCAATGAATATTTTTA+TGG - chr5_3:9311335-9311354 Msa0797240:intron 20.0%
!! TTCTTATAACCTTTGTATAT+GGG + chr5_3:9311401-9311420 Msa0797230:three_prime_UTR 20.0%
!! ATTCTTATAACCTTTGTATA+TGG + chr5_3:9311402-9311421 Msa0797230:three_prime_UTR 20.0%
!! AATTAAAATTAACCTAGAGA+TGG + chr5_3:9311473-9311492 Msa0797230:three_prime_UTR 20.0%
!!! TGTGTCAATGAATATTTTTA+TGG - chr5_3:9311335-9311354 Msa0797240:intron 20.0%
!! TTCTTATAACCTTTGTATAT+GGG + chr5_3:9311401-9311420 Msa0797230:three_prime_UTR 20.0%
!! ATTCTTATAACCTTTGTATA+TGG + chr5_3:9311402-9311421 Msa0797230:three_prime_UTR 20.0%
!! AATTAAAATTAACCTAGAGA+TGG + chr5_3:9311473-9311492 Msa0797230:three_prime_UTR 20.0%
! ATATCTCTATCATATGCATA+TGG + chr5_3:9310642-9310661 Msa0797230:three_prime_UTR 25.0%
! CATGTGGAAAAAAGAAAATA+TGG + chr5_3:9311228-9311247 Msa0797230:three_prime_UTR 25.0%
! TTTACAAGGTAAAATTCACA+AGG + chr5_3:9311277-9311296 Msa0797230:three_prime_UTR 25.0%
! TGTCTTGATTTAGATTTACA+AGG + chr5_3:9311291-9311310 Msa0797230:three_prime_UTR 25.0%
!! CAAAGGTTATAAGAATGTTT+TGG - chr5_3:9311406-9311425 Msa0797240:intron 25.0%
!!! GTATTTGTTTTCTTTTGAAC+CGG - chr5_3:9311865-9311884 Msa0797240:intron 25.0%
!!! TATTTGTTTTCTTTTGAACC+GGG - chr5_3:9311866-9311885 Msa0797240:intron 25.0%
!!! AAAATTGGATCTTGTTATTG+AGG - chr5_3:9312420-9312439 Msa0797240:intron 25.0%
! ATATCTCTATCATATGCATA+TGG + chr5_3:9310642-9310661 Msa0797230:three_prime_UTR 25.0%
! CATGTGGAAAAAAGAAAATA+TGG + chr5_3:9311228-9311247 Msa0797230:three_prime_UTR 25.0%
! TTTACAAGGTAAAATTCACA+AGG + chr5_3:9311277-9311296 Msa0797230:three_prime_UTR 25.0%
! TGTCTTGATTTAGATTTACA+AGG + chr5_3:9311291-9311310 Msa0797230:three_prime_UTR 25.0%
!! CAAAGGTTATAAGAATGTTT+TGG - chr5_3:9311406-9311425 Msa0797240:intron 25.0%
!!! GTATTTGTTTTCTTTTGAAC+CGG - chr5_3:9311865-9311884 Msa0797240:intron 25.0%
!!! TATTTGTTTTCTTTTGAACC+GGG - chr5_3:9311866-9311885 Msa0797240:intron 25.0%
!!! AAAATTGGATCTTGTTATTG+AGG - chr5_3:9312420-9312439 Msa0797240:intron 25.0%
!!! ATGTTGCTTTTCCATGATAA+AGG - chr5_3:9310660-9310679 Msa0797240:CDS 30.0%
TGAAAGCAGTAGAATTATGT+AGG + chr5_3:9310978-9310997 Msa0797230:three_prime_UTR 30.0%
!! ATGATAATTTGCTTTGCATG+TGG + chr5_3:9311244-9311263 Msa0797230:three_prime_UTR 30.0%
TCTAAATCAAGACATAGTCA+AGG - chr5_3:9311297-9311316 Msa0797240:intron 30.0%
AAAATCCATTGATGAAACAC+TGG - chr5_3:9311433-9311452 Msa0797240:intron 30.0%
TTAATACATTCCTTCGAATG+AGG - chr5_3:9311491-9311510 Msa0797240:intron 30.0%
TTAATCCCTTAAATTGTGAC+CGG - chr5_3:9311722-9311741 Msa0797240:intron 30.0%
TTGAACACAAGATTTGATCT+CGG + chr5_3:9311809-9311828 Msa0797230:three_prime_UTR 30.0%
!! ATTTGTTTTCTTTTGAACCG+GGG - chr5_3:9311867-9311886 Msa0797240:intron 30.0%
! ATAGCAATTTTACTCAACTG+AGG + chr5_3:9312331-9312350 None:intergenic 30.0%
!!! ATGTTGCTTTTCCATGATAA+AGG - chr5_3:9310660-9310679 Msa0797240:CDS 30.0%
TGAAAGCAGTAGAATTATGT+AGG + chr5_3:9310978-9310997 Msa0797230:three_prime_UTR 30.0%
!! ATGATAATTTGCTTTGCATG+TGG + chr5_3:9311244-9311263 Msa0797230:three_prime_UTR 30.0%
TCTAAATCAAGACATAGTCA+AGG - chr5_3:9311297-9311316 Msa0797240:intron 30.0%
AAAATCCATTGATGAAACAC+TGG - chr5_3:9311433-9311452 Msa0797240:intron 30.0%
TTAATACATTCCTTCGAATG+AGG - chr5_3:9311491-9311510 Msa0797240:intron 30.0%
TTAATCCCTTAAATTGTGAC+CGG - chr5_3:9311722-9311741 Msa0797240:intron 30.0%
TTGAACACAAGATTTGATCT+CGG + chr5_3:9311809-9311828 Msa0797230:three_prime_UTR 30.0%
!! ATTTGTTTTCTTTTGAACCG+GGG - chr5_3:9311867-9311886 Msa0797240:intron 30.0%
! ATAGCAATTTTACTCAACTG+AGG + chr5_3:9312331-9312350 None:intergenic 30.0%
! TGCTTTTCCATGATAAAGGT+AGG - chr5_3:9310664-9310683 Msa0797240:CDS 35.0%
TGTTTGTCCTACCTTTATCA+TGG + chr5_3:9310674-9310693 Msa0797230:three_prime_UTR 35.0%
TTGCATACCCTCTATAGATT+TGG + chr5_3:9311016-9311035 Msa0797230:three_prime_UTR 35.0%
CAGATGATTTGATATCTCCA+GGG + chr5_3:9311373-9311392 Msa0797230:three_prime_UTR 35.0%
TCAGATGATTTGATATCTCC+AGG + chr5_3:9311374-9311393 Msa0797230:three_prime_UTR 35.0%
TGGAGATATCAAATCATCTG+AGG - chr5_3:9311373-9311392 Msa0797240:intron 35.0%
ACTAACCAGTGTTTCATCAA+TGG + chr5_3:9311441-9311460 Msa0797230:three_prime_UTR 35.0%
GATATAAGATCCTCATTCGA+AGG + chr5_3:9311504-9311523 Msa0797230:three_prime_UTR 35.0%
ATGAGGATCTTATATCGCTT+CGG - chr5_3:9311508-9311527 Msa0797240:CDS 35.0%
! ATATCGCTTCGGTATTGAAT+TGG - chr5_3:9311519-9311538 Msa0797240:CDS 35.0%
! ACTTTTACATATTGCTGCCA+TGG + chr5_3:9311600-9311619 Msa0797230:three_prime_UTR 35.0%
TGGCAGCAATATGTAAAAGT+TGG - chr5_3:9311600-9311619 Msa0797240:CDS 35.0%
! CTGTTTGAGATCAGAAATTC+AGG - chr5_3:9311668-9311687 Msa0797240:intron 35.0%
ACAGTCTTAAACTTACAAGC+CGG + chr5_3:9311744-9311763 Msa0797230:intron 35.0%
ATATGTTATAACAGGAACCC+CGG + chr5_3:9311887-9311906 Msa0797230:three_prime_UTR 35.0%
!! AAGATGATCGGAGAGTATTT+CGG + chr5_3:9312056-9312075 None:intergenic 35.0%
TAGAGCTTCATGAAGATGAT+CGG + chr5_3:9312068-9312087 None:intergenic 35.0%
!! GTCAGTTTTAACACTCGATA+AGG + chr5_3:9312230-9312249 None:intergenic 35.0%
AGATTCATTAATGCAGTCGA+AGG - chr5_3:9312282-9312301 Msa0797240:intron 35.0%
AAAGATGCAAAAGCAGCAAA+AGG + chr5_3:9312382-9312401 None:intergenic 35.0%
TGTGGAAACAGTTGCAAAAT+TGG - chr5_3:9312405-9312424 Msa0797240:intron 35.0%
ATTGAGGAAGTTGAAGAACT+TGG - chr5_3:9312436-9312455 Msa0797240:intron 35.0%
TTGAGGAAGTTGAAGAACTT+GGG - chr5_3:9312437-9312456 Msa0797240:intron 35.0%
!! TGCTTTAAAGAGTTTAGAGC+TGG - chr5_3:9312469-9312488 Msa0797240:intron 35.0%
! TGATATTGTTGTGACTTGTG+AGG - chr5_3:9312495-9312514 Msa0797240:intron 35.0%
! TGCTTTTCCATGATAAAGGT+AGG - chr5_3:9310664-9310683 Msa0797240:CDS 35.0%
TGTTTGTCCTACCTTTATCA+TGG + chr5_3:9310674-9310693 Msa0797230:three_prime_UTR 35.0%
TTGCATACCCTCTATAGATT+TGG + chr5_3:9311016-9311035 Msa0797230:three_prime_UTR 35.0%
CAGATGATTTGATATCTCCA+GGG + chr5_3:9311373-9311392 Msa0797230:three_prime_UTR 35.0%
TCAGATGATTTGATATCTCC+AGG + chr5_3:9311374-9311393 Msa0797230:three_prime_UTR 35.0%
TGGAGATATCAAATCATCTG+AGG - chr5_3:9311373-9311392 Msa0797240:intron 35.0%
ACTAACCAGTGTTTCATCAA+TGG + chr5_3:9311441-9311460 Msa0797230:three_prime_UTR 35.0%
GATATAAGATCCTCATTCGA+AGG + chr5_3:9311504-9311523 Msa0797230:three_prime_UTR 35.0%
ATGAGGATCTTATATCGCTT+CGG - chr5_3:9311508-9311527 Msa0797240:CDS 35.0%
! ATATCGCTTCGGTATTGAAT+TGG - chr5_3:9311519-9311538 Msa0797240:CDS 35.0%
! ACTTTTACATATTGCTGCCA+TGG + chr5_3:9311600-9311619 Msa0797230:three_prime_UTR 35.0%
TGGCAGCAATATGTAAAAGT+TGG - chr5_3:9311600-9311619 Msa0797240:CDS 35.0%
! CTGTTTGAGATCAGAAATTC+AGG - chr5_3:9311668-9311687 Msa0797240:intron 35.0%
ACAGTCTTAAACTTACAAGC+CGG + chr5_3:9311744-9311763 Msa0797230:intron 35.0%
ATATGTTATAACAGGAACCC+CGG + chr5_3:9311887-9311906 Msa0797230:three_prime_UTR 35.0%
!! AAGATGATCGGAGAGTATTT+CGG + chr5_3:9312056-9312075 None:intergenic 35.0%
TAGAGCTTCATGAAGATGAT+CGG + chr5_3:9312068-9312087 None:intergenic 35.0%
!! GTCAGTTTTAACACTCGATA+AGG + chr5_3:9312230-9312249 None:intergenic 35.0%
AGATTCATTAATGCAGTCGA+AGG - chr5_3:9312282-9312301 Msa0797240:intron 35.0%
AAAGATGCAAAAGCAGCAAA+AGG + chr5_3:9312382-9312401 None:intergenic 35.0%
TGTGGAAACAGTTGCAAAAT+TGG - chr5_3:9312405-9312424 Msa0797240:intron 35.0%
ATTGAGGAAGTTGAAGAACT+TGG - chr5_3:9312436-9312455 Msa0797240:intron 35.0%
TTGAGGAAGTTGAAGAACTT+GGG - chr5_3:9312437-9312456 Msa0797240:intron 35.0%
!! TGCTTTAAAGAGTTTAGAGC+TGG - chr5_3:9312469-9312488 Msa0797240:intron 35.0%
! TGATATTGTTGTGACTTGTG+AGG - chr5_3:9312495-9312514 Msa0797240:intron 35.0%
ACTGCAGAAAGAAAGTGAAG+TGG - chr5_3:9310693-9310712 Msa0797240:CDS 40.0%
TGAAACGATGAAGGAAGCTA+AGG - chr5_3:9310732-9310751 Msa0797240:CDS 40.0%
TCTACTGCTTTCAAGCTTGA+AGG - chr5_3:9310985-9311004 Msa0797240:CDS 40.0%
AGGTCTTGCCAAATCTATAG+AGG - chr5_3:9311005-9311024 Msa0797240:CDS 40.0%
GGTCTTGCCAAATCTATAGA+GGG - chr5_3:9311006-9311025 Msa0797240:CDS 40.0%
! TATGGAGAAATTGATAGCCC+TGG - chr5_3:9311353-9311372 Msa0797240:intron 40.0%
TCTGAGGATCCCATATACAA+AGG - chr5_3:9311389-9311408 Msa0797240:intron 40.0%
GGTACTGTCACAAATTTCCA+TGG - chr5_3:9311580-9311599 Msa0797240:CDS 40.0%
ACAAGCCGGTCACAATTTAA+GGG + chr5_3:9311730-9311749 Msa0797230:intron 40.0%
TACAAGCCGGTCACAATTTA+AGG + chr5_3:9311731-9311750 Msa0797230:intron 40.0%
CAAGATTTGATCTCGGAGTT+CGG + chr5_3:9311802-9311821 Msa0797230:three_prime_UTR 40.0%
ATCTTGTGTTCAAACACAGC+CGG - chr5_3:9311816-9311835 Msa0797240:CDS 40.0%
!! AACATGGCTCTAACTGATCT+TGG + chr5_3:9311944-9311963 None:intergenic 40.0%
ATCAGTTAGAGCCATGTTCA+AGG - chr5_3:9311946-9311965 Msa0797240:intron 40.0%
TATGCATGGATCCTTGAACA+TGG + chr5_3:9311960-9311979 None:intergenic 40.0%
TGTTCAAGGATCCATGCATA+AGG - chr5_3:9311960-9311979 Msa0797240:intron 40.0%
GTTCAAGGATCCATGCATAA+GGG - chr5_3:9311961-9311980 Msa0797240:intron 40.0%
!! AGATGATCGGAGAGTATTTC+GGG + chr5_3:9312055-9312074 None:intergenic 40.0%
TCATCTTCATGAAGCTCTAC+AGG - chr5_3:9312069-9312088 Msa0797240:intron 40.0%
TGCATGGTTGTGTTTGTGTT+TGG + chr5_3:9312140-9312159 None:intergenic 40.0%
! GTTTGAGCATGTTGTTTGCA+TGG + chr5_3:9312156-9312175 None:intergenic 40.0%
ACTCTTCTGCATTGCTTGAT+TGG - chr5_3:9312248-9312267 Msa0797240:intron 40.0%
!! CACTAGTCTTGAATTCTCTG+AGG - chr5_3:9312351-9312370 Msa0797240:intron 40.0%
! TGCTTTTGCATCTTTGCTTG+TGG - chr5_3:9312387-9312406 Msa0797240:intron 40.0%
ACTGCAGAAAGAAAGTGAAG+TGG - chr5_3:9310693-9310712 Msa0797240:CDS 40.0%
TGAAACGATGAAGGAAGCTA+AGG - chr5_3:9310732-9310751 Msa0797240:CDS 40.0%
TCTACTGCTTTCAAGCTTGA+AGG - chr5_3:9310985-9311004 Msa0797240:CDS 40.0%
AGGTCTTGCCAAATCTATAG+AGG - chr5_3:9311005-9311024 Msa0797240:CDS 40.0%
GGTCTTGCCAAATCTATAGA+GGG - chr5_3:9311006-9311025 Msa0797240:CDS 40.0%
! TATGGAGAAATTGATAGCCC+TGG - chr5_3:9311353-9311372 Msa0797240:intron 40.0%
TCTGAGGATCCCATATACAA+AGG - chr5_3:9311389-9311408 Msa0797240:intron 40.0%
GGTACTGTCACAAATTTCCA+TGG - chr5_3:9311580-9311599 Msa0797240:CDS 40.0%
ACAAGCCGGTCACAATTTAA+GGG + chr5_3:9311730-9311749 Msa0797230:intron 40.0%
TACAAGCCGGTCACAATTTA+AGG + chr5_3:9311731-9311750 Msa0797230:intron 40.0%
CAAGATTTGATCTCGGAGTT+CGG + chr5_3:9311802-9311821 Msa0797230:three_prime_UTR 40.0%
ATCTTGTGTTCAAACACAGC+CGG - chr5_3:9311816-9311835 Msa0797240:CDS 40.0%
!! AACATGGCTCTAACTGATCT+TGG + chr5_3:9311944-9311963 None:intergenic 40.0%
ATCAGTTAGAGCCATGTTCA+AGG - chr5_3:9311946-9311965 Msa0797240:intron 40.0%
TATGCATGGATCCTTGAACA+TGG + chr5_3:9311960-9311979 None:intergenic 40.0%
TGTTCAAGGATCCATGCATA+AGG - chr5_3:9311960-9311979 Msa0797240:intron 40.0%
GTTCAAGGATCCATGCATAA+GGG - chr5_3:9311961-9311980 Msa0797240:intron 40.0%
!! AGATGATCGGAGAGTATTTC+GGG + chr5_3:9312055-9312074 None:intergenic 40.0%
TCATCTTCATGAAGCTCTAC+AGG - chr5_3:9312069-9312088 Msa0797240:intron 40.0%
TGCATGGTTGTGTTTGTGTT+TGG + chr5_3:9312140-9312159 None:intergenic 40.0%
! GTTTGAGCATGTTGTTTGCA+TGG + chr5_3:9312156-9312175 None:intergenic 40.0%
ACTCTTCTGCATTGCTTGAT+TGG - chr5_3:9312248-9312267 Msa0797240:intron 40.0%
!! CACTAGTCTTGAATTCTCTG+AGG - chr5_3:9312351-9312370 Msa0797240:intron 40.0%
! TGCTTTTGCATCTTTGCTTG+TGG - chr5_3:9312387-9312406 Msa0797240:intron 40.0%
AAGTGAAGTGGAACTTCGAG+CGG - chr5_3:9310705-9310724 Msa0797240:CDS 45.0%
AGCGGATACTGAAACGATGA+AGG - chr5_3:9310723-9310742 Msa0797240:CDS 45.0%
AGTCTCTATGTGCCATCTCT+AGG - chr5_3:9311458-9311477 Msa0797240:intron 45.0%
TGACAGTACCTAGAATGCCT+TGG + chr5_3:9311570-9311589 Msa0797230:three_prime_UTR 45.0%
GCAAATAGTGCCTACGTATC+CGG + chr5_3:9311838-9311857 Msa0797230:three_prime_UTR 45.0%
GCGACAGTTTCTTATGCTGT+TGG + chr5_3:9312023-9312042 None:intergenic 45.0%
! AGAGTATTTCGGGAGAGCAA+TGG + chr5_3:9312045-9312064 None:intergenic 45.0%
GAGACGAGGTTGAGACTTTA+TGG + chr5_3:9312107-9312126 None:intergenic 45.0%
TCTCAACCTCGTCTCTTCTT+AGG - chr5_3:9312112-9312131 Msa0797240:intron 45.0%
TTGGAACCTAAGAAGAGACG+AGG + chr5_3:9312121-9312140 None:intergenic 45.0%
AAACTAGCTGCTGCACAAGT+TGG - chr5_3:9312172-9312191 Msa0797240:CDS 45.0%
!! CAAGTTGGTCAAGGTAGACA+TGG - chr5_3:9312187-9312206 Msa0797240:CDS 45.0%
GGTCAAGGTAGACATGGAAA+AGG - chr5_3:9312193-9312212 Msa0797240:CDS 45.0%
TGCAGTCGAAGGAAAACGAA+AGG - chr5_3:9312293-9312312 Msa0797240:intron 45.0%
CGGAACAATTTGCCTTCTCA+TGG - chr5_3:9312538-9312557 Msa0797240:CDS 45.0%
AAGTGAAGTGGAACTTCGAG+CGG - chr5_3:9310705-9310724 Msa0797240:CDS 45.0%
AGCGGATACTGAAACGATGA+AGG - chr5_3:9310723-9310742 Msa0797240:CDS 45.0%
AGTCTCTATGTGCCATCTCT+AGG - chr5_3:9311458-9311477 Msa0797240:intron 45.0%
TGACAGTACCTAGAATGCCT+TGG + chr5_3:9311570-9311589 Msa0797230:three_prime_UTR 45.0%
GCAAATAGTGCCTACGTATC+CGG + chr5_3:9311838-9311857 Msa0797230:three_prime_UTR 45.0%
GCGACAGTTTCTTATGCTGT+TGG + chr5_3:9312023-9312042 None:intergenic 45.0%
! AGAGTATTTCGGGAGAGCAA+TGG + chr5_3:9312045-9312064 None:intergenic 45.0%
GAGACGAGGTTGAGACTTTA+TGG + chr5_3:9312107-9312126 None:intergenic 45.0%
TCTCAACCTCGTCTCTTCTT+AGG - chr5_3:9312112-9312131 Msa0797240:intron 45.0%
TTGGAACCTAAGAAGAGACG+AGG + chr5_3:9312121-9312140 None:intergenic 45.0%
AAACTAGCTGCTGCACAAGT+TGG - chr5_3:9312172-9312191 Msa0797240:CDS 45.0%
!! CAAGTTGGTCAAGGTAGACA+TGG - chr5_3:9312187-9312206 Msa0797240:CDS 45.0%
GGTCAAGGTAGACATGGAAA+AGG - chr5_3:9312193-9312212 Msa0797240:CDS 45.0%
TGCAGTCGAAGGAAAACGAA+AGG - chr5_3:9312293-9312312 Msa0797240:intron 45.0%
CGGAACAATTTGCCTTCTCA+TGG - chr5_3:9312538-9312557 Msa0797240:CDS 45.0%
!!! ATTTTTTTTTTAAATGATTT+TGG - chr5_3:9310806-9310825 Msa0797240:CDS 5.0%
!!! ATTTTTTTTTTAAATGATTT+TGG - chr5_3:9310806-9310825 Msa0797240:CDS 5.0%
ACGCCTTCAACCTGAAGTGT+CGG + chr5_3:9311104-9311123 Msa0797230:three_prime_UTR 50.0%
!! CTTCAGGTTGAAGGCGTGTA+TGG - chr5_3:9311107-9311126 Msa0797240:CDS 50.0%
! TTGAAGGCGTGTATGGCATC+TGG - chr5_3:9311114-9311133 Msa0797240:CDS 50.0%
GTCAGACAGCGATACAACAC+TGG - chr5_3:9311153-9311172 Msa0797240:CDS 50.0%
CACTGGTGTCTGTGCTTCAT+AGG - chr5_3:9311170-9311189 Msa0797240:CDS 50.0%
! GCTTCGGTATTGAATTGGCC+AGG - chr5_3:9311524-9311543 Msa0797240:CDS 50.0%
GGAGCTGTTCTTCGCCAATT+CGG - chr5_3:9311621-9311640 Msa0797240:CDS 50.0%
TACACCGTGGTTGCTCTACA+TGG - chr5_3:9311645-9311664 Msa0797240:intron 50.0%
ACAGCCATGTAGAGCAACCA+CGG + chr5_3:9311652-9311671 Msa0797230:intron 50.0%
TACGCATCAGACTGCAGAGT+GGG + chr5_3:9311768-9311787 Msa0797230:three_prime_UTR 50.0%
GTCTGATGCGTAGGCACAAT+TGG - chr5_3:9311776-9311795 Msa0797240:CDS 50.0%
TCAAACACAGCCGGATACGT+AGG - chr5_3:9311825-9311844 Msa0797240:CDS 50.0%
TCTGCTGCAACCCTTATGCA+TGG + chr5_3:9311974-9311993 None:intergenic 50.0%
ATGCATAAGGGTTGCAGCAG+AGG - chr5_3:9311973-9311992 Msa0797240:intron 50.0%
GGTAGACATGGAAAAGGCTC+TGG - chr5_3:9312199-9312218 Msa0797240:CDS 50.0%
!! AACCTCGAGTTGATGTGTCG+CGG - chr5_3:9312518-9312537 Msa0797240:CDS 50.0%
ACGCCTTCAACCTGAAGTGT+CGG + chr5_3:9311104-9311123 Msa0797230:three_prime_UTR 50.0%
!! CTTCAGGTTGAAGGCGTGTA+TGG - chr5_3:9311107-9311126 Msa0797240:CDS 50.0%
! TTGAAGGCGTGTATGGCATC+TGG - chr5_3:9311114-9311133 Msa0797240:CDS 50.0%
GTCAGACAGCGATACAACAC+TGG - chr5_3:9311153-9311172 Msa0797240:CDS 50.0%
CACTGGTGTCTGTGCTTCAT+AGG - chr5_3:9311170-9311189 Msa0797240:CDS 50.0%
! GCTTCGGTATTGAATTGGCC+AGG - chr5_3:9311524-9311543 Msa0797240:CDS 50.0%
GGAGCTGTTCTTCGCCAATT+CGG - chr5_3:9311621-9311640 Msa0797240:CDS 50.0%
TACACCGTGGTTGCTCTACA+TGG - chr5_3:9311645-9311664 Msa0797240:intron 50.0%
ACAGCCATGTAGAGCAACCA+CGG + chr5_3:9311652-9311671 Msa0797230:intron 50.0%
TACGCATCAGACTGCAGAGT+GGG + chr5_3:9311768-9311787 Msa0797230:three_prime_UTR 50.0%
GTCTGATGCGTAGGCACAAT+TGG - chr5_3:9311776-9311795 Msa0797240:CDS 50.0%
TCAAACACAGCCGGATACGT+AGG - chr5_3:9311825-9311844 Msa0797240:CDS 50.0%
TCTGCTGCAACCCTTATGCA+TGG + chr5_3:9311974-9311993 None:intergenic 50.0%
ATGCATAAGGGTTGCAGCAG+AGG - chr5_3:9311973-9311992 Msa0797240:intron 50.0%
GGTAGACATGGAAAAGGCTC+TGG - chr5_3:9312199-9312218 Msa0797240:CDS 50.0%
!! AACCTCGAGTTGATGTGTCG+CGG - chr5_3:9312518-9312537 Msa0797240:CDS 50.0%
CTATGTAGCCCCGACACTTC+AGG - chr5_3:9311091-9311110 Msa0797240:CDS 55.0%
!! GCCTTCAACCTGAAGTGTCG+GGG + chr5_3:9311102-9311121 Msa0797230:three_prime_UTR 55.0%
! CGCCTTCAACCTGAAGTGTC+GGG + chr5_3:9311103-9311122 Msa0797230:three_prime_UTR 55.0%
! CCAGGCGTTGCATGCAAGTT+GGG - chr5_3:9311542-9311561 Msa0797240:CDS 55.0%
! TGCATGCAAGTTGGGAGCCA+AGG - chr5_3:9311550-9311569 Msa0797240:CDS 55.0%
! GTTGGGAGCCAAGGCATTCT+AGG - chr5_3:9311559-9311578 Msa0797240:CDS 55.0%
CAACCACGGTGTAGCCGAAT+TGG + chr5_3:9311638-9311657 Msa0797230:intron 55.0%
CTACGCATCAGACTGCAGAG+TGG + chr5_3:9311769-9311788 Msa0797230:three_prime_UTR 55.0%
CACTCTGCAGTCTGATGCGT+AGG - chr5_3:9311767-9311786 Msa0797240:CDS 55.0%
!! GCTGCTGCACAAGTTGGTCA+AGG - chr5_3:9312178-9312197 Msa0797240:CDS 55.0%
TTCCGCGACACATCAACTCG+AGG + chr5_3:9312523-9312542 None:intergenic 55.0%
CTATGTAGCCCCGACACTTC+AGG - chr5_3:9311091-9311110 Msa0797240:CDS 55.0%
!! GCCTTCAACCTGAAGTGTCG+GGG + chr5_3:9311102-9311121 Msa0797230:three_prime_UTR 55.0%
! CGCCTTCAACCTGAAGTGTC+GGG + chr5_3:9311103-9311122 Msa0797230:three_prime_UTR 55.0%
! CCAGGCGTTGCATGCAAGTT+GGG - chr5_3:9311542-9311561 Msa0797240:CDS 55.0%
! TGCATGCAAGTTGGGAGCCA+AGG - chr5_3:9311550-9311569 Msa0797240:CDS 55.0%
! GTTGGGAGCCAAGGCATTCT+AGG - chr5_3:9311559-9311578 Msa0797240:CDS 55.0%
CAACCACGGTGTAGCCGAAT+TGG + chr5_3:9311638-9311657 Msa0797230:intron 55.0%
CTACGCATCAGACTGCAGAG+TGG + chr5_3:9311769-9311788 Msa0797230:three_prime_UTR 55.0%
CACTCTGCAGTCTGATGCGT+AGG - chr5_3:9311767-9311786 Msa0797240:CDS 55.0%
!! GCTGCTGCACAAGTTGGTCA+AGG - chr5_3:9312178-9312197 Msa0797240:CDS 55.0%
TTCCGCGACACATCAACTCG+AGG + chr5_3:9312523-9312542 None:intergenic 55.0%
!! GCCCCGACACTTCAGGTTGA+AGG - chr5_3:9311098-9311117 Msa0797240:CDS 60.0%
GGCGTGTATGGCATCTGGCA+TGG - chr5_3:9311119-9311138 Msa0797240:CDS 60.0%
! GCCAGGCGTTGCATGCAAGT+TGG - chr5_3:9311541-9311560 Msa0797240:CDS 60.0%
CCCAACTTGCATGCAACGCC+TGG + chr5_3:9311545-9311564 Msa0797230:three_prime_UTR 60.0%
TCGCCAATTCGGCTACACCG+TGG - chr5_3:9311632-9311651 Msa0797240:CDS 60.0%
!! GCCCCGACACTTCAGGTTGA+AGG - chr5_3:9311098-9311117 Msa0797240:CDS 60.0%
GGCGTGTATGGCATCTGGCA+TGG - chr5_3:9311119-9311138 Msa0797240:CDS 60.0%
! GCCAGGCGTTGCATGCAAGT+TGG - chr5_3:9311541-9311560 Msa0797240:CDS 60.0%
CCCAACTTGCATGCAACGCC+TGG + chr5_3:9311545-9311564 Msa0797230:three_prime_UTR 60.0%
TCGCCAATTCGGCTACACCG+TGG - chr5_3:9311632-9311651 Msa0797240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9310627 9312570 9310627 ID=Msa0797240;Name=Msa0797240
chr5_3 mRNA 9310627 9312570 9310627 ID=Msa0797240-mRNA-1;Parent=Msa0797240;Name=Msa0797240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.8|1|1|5|0|337
chr5_3 exon 9312516 9312570 9312516 ID=Msa0797240-mRNA-1:exon:4074;Parent=Msa0797240-mRNA-1
chr5_3 exon 9312170 9312229 9312170 ID=Msa0797240-mRNA-1:exon:4073;Parent=Msa0797240-mRNA-1
chr5_3 exon 9311743 9311864 9311743 ID=Msa0797240-mRNA-1:exon:4072;Parent=Msa0797240-mRNA-1
chr5_3 exon 9311508 9311651 9311508 ID=Msa0797240-mRNA-1:exon:4071;Parent=Msa0797240-mRNA-1
chr5_3 exon 9310627 9311259 9310627 ID=Msa0797240-mRNA-1:exon:4070;Parent=Msa0797240-mRNA-1
chr5_3 CDS 9312516 9312570 9312516 ID=Msa0797240-mRNA-1:cds;Parent=Msa0797240-mRNA-1
chr5_3 CDS 9312170 9312229 9312170 ID=Msa0797240-mRNA-1:cds;Parent=Msa0797240-mRNA-1
chr5_3 CDS 9311743 9311864 9311743 ID=Msa0797240-mRNA-1:cds;Parent=Msa0797240-mRNA-1
chr5_3 CDS 9311508 9311651 9311508 ID=Msa0797240-mRNA-1:cds;Parent=Msa0797240-mRNA-1
chr5_3 CDS 9310627 9311259 9310627 ID=Msa0797240-mRNA-1:cds;Parent=Msa0797240-mRNA-1
Gene Sequence

>Msa0797240

ATGAACGTTCTGCCATATGCATATGATAGAGATATGTTGCTTTTCCATGATAAAGGAGAAGACCTACATAATTCTACTGCTTTCAAGCTTGAAGGTCTTGCCAAATCTATAGAGGCTTGTGTCAATGAATATTTTTATGGAGAAATTGATAGCCCTGGAGATATCAAATCATCTGAGGATCCCATATACAAAGGTTATAAGAATGTTTTGGATTCAAAATCCATTGATGAAACACTGGCGTTGCATGCAAGTTGGGAGCCAAGGCATTCTAGGTACTGTCACAAATTTCCATGGCAGCAATATGTAAAAGTTGGAGCTGTTCTTCGCCAATTCGGCTACACCGTGGTTGCTCTACATGGCTGTTTGAGATCAGAAATTCAGACACCAAGATCAGTTAGAGCCATGTTCAAGGATCCATGCATAAGGGTTGCAGCAGAGGTATCAAAAGTACTGATAGAACTTTCCAACAGCATAAGAAACTGTCGCCATTGCTCTCCCGAAATACTCTCCGATCATCTTCATGAAGCTCTACAGGATCTAAACAATGCCATAAAGTCTCAACCTCGTCTCTTCTTAGGTTCCAAACACAAACACAACCATGCAAACAACATGCTCAAACTAGCTGCTGCACAAGTTGGTCAAGGTAGACATGGAAAAGGCTCTGGATTCTCCTTATCGAGTGTTAAAACTGACTCTTCTGCATTGCTTGATTGGAAAACAAAAAGAGATTCATTAATGCAGTCGAAGGAAAACGAAAGGAAATCTTTGAGACCTCAGTTGAGTAAAATTGCTATCACTAGTCTTGAATTCTCTGAGGCACTTCCTTTTGCTGCTTTTGCATCTTTGCTTGTGGAAACAGTTGCAAAATTGGATCTTGTTATTGAGGAAGTTGAAGAACTTGGGAGATTAGATTGCTTTAAAGAGTTTAGAGCTGGTGATGATATTGTTGTGACTTGTGAGGAACCTCGAGTTGATGTGTCGCGGAACAATTTGCCTTCTCATGGAATTGAATAG

Protein sequence

>Msa0797240

MNVLPYAYDRDMLLFHDKGEDLHNSTAFKLEGLAKSIEACVNEYFYGEIDSPGDIKSSEDPIYKGYKNVLDSKSIDETLALHASWEPRHSRYCHKFPWQQYVKVGAVLRQFGYTVVALHGCLRSEIQTPRSVRAMFKDPCIRVAAEVSKVLIELSNSIRNCRHCSPEILSDHLHEALQDLNNAIKSQPRLFLGSKHKHNHANNMLKLAAAQVGQGRHGKGSGFSLSSVKTDSSALLDWKTKRDSLMQSKENERKSLRPQLSKIAITSLEFSEALPFAAFASLLVETVAKLDLVIEEVEELGRLDCFKEFRAGDDIVVTCEEPRVDVSRNNLPSHGIE*