AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363180 MtrunA17_Chr3g0095111 94.484 417 7 1 1 417 1 401 0.0 798
Msa0363180 MtrunA17_Chr5g0442131 77.938 417 76 1 1 417 1 401 0.0 676
Msa0363180 MtrunA17_Chr5g0445301 80.000 170 33 1 249 417 7 176 1.78e-93 278
Msa0363180 MtrunA17_Chr5g0428161 76.613 124 29 0 179 302 6 129 2.21e-64 202
Msa0363180 MtrunA17_Chr5g0428171 63.291 79 13 1 28 106 1 63 1.01e-22 91.3
Msa0363180 MtrunA17_Chr5g0445291 72.500 40 11 0 97 136 1 40 1.92e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363180 AT2G13360.3 82.734 417 56 1 1 417 1 401 0.0 719
Msa0363180 AT2G13360.1 82.734 417 56 1 1 417 1 401 0.0 719
Msa0363180 AT2G13360.2 82.734 417 56 1 1 417 1 401 0.0 719

Find 143 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGCAACAAATATT+AGG 0.133896 3_1:-55358549 Msa0363180:three_prime_UTR
CCTTCCATTCAGCTTCTTTA+TGG 0.134580 3_1:-55360246 Msa0363180:CDS
CAACATCGACATTAAATTTA+AGG 0.143214 3_1:+55361228 None:intergenic
CAACTATTGGGTTGTCTTGC+TGG 0.175642 3_1:-55358929 Msa0363180:CDS
TGTTGGTTACCCAGTAAAAT+TGG 0.196012 3_1:-55358885 Msa0363180:CDS
TTTGAAGCTTCAATGGCTTT+AGG 0.239169 3_1:+55360351 None:intergenic
TCTAACTGTGGCCAAGTTAT+TGG 0.247414 3_1:+55361085 None:intergenic
CTTTCCCTTCCTACTGGTAT+TGG 0.249614 3_1:-55360390 Msa0363180:CDS
TTTACCTATAAAGAAGAATT+TGG 0.267936 3_1:+55358582 None:intergenic
GACACCAAATTCTTCTTTAT+AGG 0.274537 3_1:-55358586 Msa0363180:three_prime_UTR
TCTACAAGATGGGAACTTAT+TGG 0.275033 3_1:-55360278 Msa0363180:CDS
TTGAAGCTTCAATGGCTTTA+GGG 0.275233 3_1:+55360352 None:intergenic
TTCTCTTGCAACAAATATTA+GGG 0.281198 3_1:-55358548 Msa0363180:three_prime_UTR
AACGATAGTCCTCGTTGTTT+CGG 0.283890 3_1:+55362383 None:intergenic
ATTCTATATAGGTGGTTCTT+TGG 0.289646 3_1:-55362552 Msa0363180:intron
GGGAAGATGGATTATGTTAA+TGG 0.310016 3_1:-55362475 Msa0363180:exon
TTCCCATCTTGTAGAACTTC+AGG 0.327105 3_1:+55360286 None:intergenic
CCAGCCCTCCTCCTTGTTGA+TGG 0.337800 3_1:-55360492 Msa0363180:CDS
AAAGAAAACTCGAAGTGATT+TGG 0.339222 3_1:+55360323 None:intergenic
TTGGCCAATTCAGTTTGCTT+TGG 0.339533 3_1:-55361268 Msa0363180:CDS
TGGCCAATTCAGTTTGCTTT+GGG 0.347985 3_1:-55361267 Msa0363180:CDS
CGTATTGTATCTTTCGTGAT+TGG 0.350211 3_1:-55361287 Msa0363180:CDS
TCCTACTGGTATTGGATTTG+TGG 0.355399 3_1:-55360382 Msa0363180:CDS
AAAGTTATGCTAAGAGCATT+TGG 0.361912 3_1:-55363618 Msa0363180:five_prime_UTR
AGAAACCATCTCTTTGTTCC+AGG 0.369723 3_1:-55362445 Msa0363180:CDS
TCCATAAAAGTCTCAAATAA+AGG 0.371861 3_1:+55358607 None:intergenic
TTTGTCAGAGCTGGAATTGC+GGG 0.374040 3_1:+55362358 None:intergenic
ACGGCGCTGAAGTTGTTAGA+AGG 0.375356 3_1:-55359747 Msa0363180:CDS
TACAATTTGAGCTTAGGTTT+GGG 0.376409 3_1:-55359712 Msa0363180:CDS
ATATTCCTCTCATTCCTTCA+AGG 0.379866 3_1:-55358823 Msa0363180:CDS
TGATTCTGCACACACTATAA+AGG 0.387046 3_1:-55361147 Msa0363180:CDS
TTGGTTCAGGTACCGGTGCT+TGG 0.388560 3_1:-55361346 Msa0363180:CDS
ATACAATTTGAGCTTAGGTT+TGG 0.393748 3_1:-55359713 Msa0363180:CDS
CGTCTTCAAGAGAGTTCAAA+AGG 0.393874 3_1:+55358709 None:intergenic
ATTGCAAGGCACAATCGTTT+AGG 0.395367 3_1:-55360174 Msa0363180:CDS
AAAAGATACAATTTGAGCTT+AGG 0.398290 3_1:-55359718 Msa0363180:CDS
GTTGTTCCTCCTTACATTGA+CGG 0.400403 3_1:-55359766 Msa0363180:CDS
CAACCCAAAGCAAACTGAAT+TGG 0.402256 3_1:+55361264 None:intergenic
GGAGTAGATGTGGCCATAAC+TGG 0.407058 3_1:-55360426 Msa0363180:CDS
TTTGCATTTGGTTCAGGTAC+CGG 0.407614 3_1:-55361353 Msa0363180:CDS
ACAAAGAGATGGTTTCTTCC+TGG 0.409728 3_1:+55362451 None:intergenic
TCAGGTAGTTTGGTGAAGTA+TGG 0.413909 3_1:+55363569 None:intergenic
TTGGGACTAAACAAAGTTGC+TGG 0.415993 3_1:-55359694 Msa0363180:CDS
TGAGTGTACCTCAGGTAGTT+TGG 0.417771 3_1:+55363559 None:intergenic
ACCTGGTCCGGTATGTTAAC+CGG 0.419216 3_1:+55362421 None:intergenic
TGGTTCAGGTACCGGTGCTT+GGG 0.420179 3_1:-55361345 Msa0363180:CDS
TCCGGTATGTTAACCGGCCC+TGG 0.422439 3_1:+55362427 None:intergenic
CTTCAAGGATTTGAGTTACA+TGG 0.423165 3_1:-55358808 Msa0363180:exon
CGATTTCCGTATGGACGAAT+GGG 0.433716 3_1:-55360448 Msa0363180:CDS
TTTGAAGAATTGCACACAAA+AGG 0.438210 3_1:-55359821 Msa0363180:CDS
CATGTAACTCAAATCCTTGA+AGG 0.438228 3_1:+55358809 None:intergenic
AAATTTCAAGCAAGGGAAGA+TGG 0.440926 3_1:-55362488 Msa0363180:exon
GTTGGTTACCCAGTAAAATT+GGG 0.446538 3_1:-55358884 Msa0363180:CDS
TCTCCCTCTTATCTACTACT+TGG 0.450916 3_1:-55363705 Msa0363180:five_prime_UTR
TTGTCCAAGTAGTAGATAAG+AGG 0.452694 3_1:+55363701 None:intergenic
AGCTGAATGGAAGGAGTGTA+TGG 0.458223 3_1:+55360255 None:intergenic
GGGACAAGAAAGTAGGAGAA+TGG 0.462118 3_1:-55363808 Msa0363180:five_prime_UTR
TAAATTTAATGTCGATGTTG+TGG 0.462439 3_1:-55361225 Msa0363180:CDS
ACGGAAATCGAGAGCACAAA+TGG 0.462702 3_1:+55360461 None:intergenic
CGTGCAACAATACCAGTAGT+AGG 0.462961 3_1:+55362274 None:intergenic
TATATAGGTGGTTCTTTGGT+GGG 0.464816 3_1:-55362548 Msa0363180:intron
CCAGTAGTAGGGATAAGAAA+TGG 0.469745 3_1:+55362286 None:intergenic
ATATCATAAATGAGCAGAAA+AGG 0.470564 3_1:+55358767 None:intergenic
CCATTTCTTATCCCTACTAC+TGG 0.470967 3_1:-55362286 Msa0363180:intron
CAGACTTGCTGTGGAGGCAT+GGG 0.471086 3_1:-55359845 Msa0363180:CDS
AGATTATCTACAAAATCTAT+TGG 0.474293 3_1:+55358369 None:intergenic
ACTTCAGCGCCGTCAATGTA+AGG 0.475994 3_1:+55359757 None:intergenic
CTGCATCCATTCACAGCCTC+AGG 0.476965 3_1:-55363738 Msa0363180:five_prime_UTR
GCCACAGTTAGAAAACTTCT+CGG 0.483622 3_1:-55361074 Msa0363180:intron
GGCTTTCTGAGAACCAGTTA+TGG 0.484234 3_1:+55360413 None:intergenic
CCATCTCTTTGTTCCAGGGC+CGG 0.485720 3_1:-55362440 Msa0363180:CDS
ATTGGGTTGTCTTGCTGGTG+TGG 0.485766 3_1:-55358924 Msa0363180:CDS
GAAAGATACAATACGATCTC+CGG 0.488513 3_1:+55361295 None:intergenic
TCCAGGGCCGGTTAACATAC+CGG 0.489689 3_1:-55362428 Msa0363180:CDS
CTATATAGGTGGTTCTTTGG+TGG 0.492443 3_1:-55362549 Msa0363180:intron
AACTGGTGTCACCAATAACT+TGG 0.495827 3_1:-55361096 Msa0363180:CDS
AGAGTTTGAAATTTCAAGCA+AGG 0.501611 3_1:-55362496 Msa0363180:five_prime_UTR
CCATCAACAAGGAGGAGGGC+TGG 0.501743 3_1:+55360492 None:intergenic
CGATGTTGTGGAAAGTGAAT+GGG 0.504080 3_1:-55361213 Msa0363180:CDS
AAATGTAGGGACAAGAAAGT+AGG 0.507102 3_1:-55363815 Msa0363180:five_prime_UTR
TCGATTTCCGTATGGACGAA+TGG 0.508249 3_1:-55360449 Msa0363180:CDS
ACAGACTTGCTGTGGAGGCA+TGG 0.510945 3_1:-55359846 Msa0363180:intron
AAAGCCCTTTCCCTTCCTAC+TGG 0.518469 3_1:-55360396 Msa0363180:CDS
ATAGCACGAATGACCTGGTC+CGG 0.521295 3_1:+55362409 None:intergenic
ACTAAACAAAGTTGCTGGAA+AGG 0.522582 3_1:-55359689 Msa0363180:CDS
TCGATGTTGTGGAAAGTGAA+TGG 0.525669 3_1:-55361214 Msa0363180:CDS
GAGTTTGAAATTTCAAGCAA+GGG 0.526677 3_1:-55362495 Msa0363180:five_prime_UTR
AAGACCATAAAGAAGCTGAA+TGG 0.527183 3_1:+55360242 None:intergenic
CAAGGAGGAGGGCTGGATGT+TGG 0.529269 3_1:+55360499 None:intergenic
CTACTCCCCATTCGTCCATA+CGG 0.535292 3_1:+55360442 None:intergenic
GCCGGTTAACATACCGGACC+AGG 0.546518 3_1:-55362422 Msa0363180:CDS
TTGTGCTCTCGATTTCCGTA+TGG 0.548771 3_1:-55360457 Msa0363180:CDS
GTGGAAAGTGAATGGGGCTG+TGG 0.549273 3_1:-55361206 Msa0363180:CDS
CTGACAAACACGTTGTCGCC+CGG 0.555374 3_1:-55361314 Msa0363180:CDS
CCATAAAGAAGCTGAATGGA+AGG 0.555686 3_1:+55360246 None:intergenic
CAAATCCAATACCAGTAGGA+AGG 0.557167 3_1:+55360385 None:intergenic
AAGCATCCTGAGGCTGTGAA+TGG 0.557469 3_1:+55363732 None:intergenic
ATGCTAAGAGCATTTGGCAG+TGG 0.557775 3_1:-55363612 Msa0363180:five_prime_UTR
CTACCTGAAGTTCTACAAGA+TGG 0.564948 3_1:-55360289 Msa0363180:CDS
CGGCGCTGAAGTTGTTAGAA+GGG 0.565477 3_1:-55359746 Msa0363180:CDS
CTGAAGTTGTTAGAAGGGCA+TGG 0.565835 3_1:-55359741 Msa0363180:CDS
TGTCCAAGTAGTAGATAAGA+GGG 0.566128 3_1:+55363702 None:intergenic
TACCCAGTAAAATTGGGAAG+TGG 0.568031 3_1:-55358878 Msa0363180:CDS
CAATACCAGTAGGAAGGGAA+AGG 0.568672 3_1:+55360391 None:intergenic
GGACGAATGGGGAGTAGATG+TGG 0.573975 3_1:-55360436 Msa0363180:CDS
GTTCATAATGAGACTGCAAC+TGG 0.575174 3_1:-55361113 Msa0363180:CDS
GTTTGGTGAAGTATGGCAGA+AGG 0.575524 3_1:+55363576 None:intergenic
TACCTGAAGTTCTACAAGAT+GGG 0.576311 3_1:-55360288 Msa0363180:CDS
ATTGTTCTGTAAGTATGCAC+TGG 0.576598 3_1:+55358844 None:intergenic
AAATCCAATACCAGTAGGAA+GGG 0.577438 3_1:+55360386 None:intergenic
AATACCAGTAGGAAGGGAAA+GGG 0.578211 3_1:+55360392 None:intergenic
ATGGATTATGTTAATGGACC+AGG 0.579109 3_1:-55362469 Msa0363180:CDS
GGCTCATAGCACGAATGACC+TGG 0.583959 3_1:+55362404 None:intergenic
GAAACCATCTCTTTGTTCCA+GGG 0.585783 3_1:-55362444 Msa0363180:CDS
CAAATCCTTGAAGGAATGAG+AGG 0.585795 3_1:+55358818 None:intergenic
ACACTCCATCAACAAGGAGG+AGG 0.586969 3_1:+55360487 None:intergenic
ATCGTTTAGGCACAGCAACC+AGG 0.588809 3_1:-55360161 Msa0363180:intron
GTGCAACAATACCAGTAGTA+GGG 0.591965 3_1:+55362275 None:intergenic
AAAGATACAATACGATCTCC+GGG 0.597636 3_1:+55361296 None:intergenic
TCTGTGTGTGTAATTAGTCA+TGG 0.603223 3_1:-55358452 Msa0363180:three_prime_UTR
TGGTAAATACAGACTTGCTG+TGG 0.606808 3_1:-55359854 Msa0363180:intron
CACTCCATCAACAAGGAGGA+GGG 0.606889 3_1:+55360488 None:intergenic
AGACTTGCTGTGGAGGCATG+GGG 0.607099 3_1:-55359844 Msa0363180:CDS
GTCTTCAAGAGAGTTCAAAA+GGG 0.607588 3_1:+55358710 None:intergenic
TAAATACAGACTTGCTGTGG+AGG 0.610487 3_1:-55359851 Msa0363180:intron
CCGGCCCTGGAACAAAGAGA+TGG 0.617441 3_1:+55362440 None:intergenic
CAGAGCACTCTCCCAAGCAC+CGG 0.620119 3_1:+55361334 None:intergenic
GACTTGAAAATATCATTGCA+AGG 0.629319 3_1:-55360188 Msa0363180:CDS
GAGATGATACTCAGAGATGT+TGG 0.631831 3_1:-55358902 Msa0363180:CDS
GATGCAGTGGAACAGTTCAG+TGG 0.644955 3_1:+55363754 None:intergenic
ATTGCACACAAAAGGAAGAG+TGG 0.645383 3_1:-55359813 Msa0363180:CDS
TCTACTACTTGGACAAGACA+TGG 0.648390 3_1:-55363694 Msa0363180:five_prime_UTR
GAGGCTGTGAATGGATGCAG+TGG 0.659455 3_1:+55363741 None:intergenic
TGCTATGAGCCGAAACAACG+AGG 0.669595 3_1:-55362392 Msa0363180:CDS
ATACTTCACCAAACTACCTG+AGG 0.670987 3_1:-55363567 Msa0363180:intron
ACATCTTGGCAACTTGAACG+AGG 0.675450 3_1:-55359653 Msa0363180:intron
GATGTTGTGGAAAGTGAATG+GGG 0.683154 3_1:-55361212 Msa0363180:CDS
GGGAGAAAATAAGCATCCTG+AGG 0.691767 3_1:+55363722 None:intergenic
TCAGCGCCGTCAATGTAAGG+AGG 0.693240 3_1:+55359760 None:intergenic
GATTTCCGTATGGACGAATG+GGG 0.694111 3_1:-55360447 Msa0363180:CDS
TGGATGACACTCCATCAACA+AGG 0.697918 3_1:+55360481 None:intergenic
ACCACAAATCCAATACCAGT+AGG 0.700818 3_1:+55360381 None:intergenic
ATGACACTCCATCAACAAGG+AGG 0.767226 3_1:+55360484 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATGATTTTTTTTTTG+TGG - chr3_1:55358958-55358977 Msa0363180:intron 10.0%
!!! TATATCCTTTTTATAATTAT+TGG - chr3_1:55361419-55361438 Msa0363180:intron 10.0%
!! AAAAAACTACAAATAAATGT+AGG - chr3_1:55358379-55358398 Msa0363180:three_prime_UTR 15.0%
!! AAAAACTACAAATAAATGTA+GGG - chr3_1:55358380-55358399 Msa0363180:three_prime_UTR 15.0%
!!! AAAAAGAATCAGAAATTTTA+AGG + chr3_1:55358545-55358564 None:intergenic 15.0%
!!! TTTTACAAAGCATAAAAAAA+AGG + chr3_1:55359100-55359119 None:intergenic 15.0%
!! TTAATAACTTTCTGAATTAT+TGG + chr3_1:55359624-55359643 None:intergenic 15.0%
!! TCAAATAATACAATTCAAAT+AGG + chr3_1:55360271-55360290 None:intergenic 15.0%
!!! ATTTACGTTTTATCTTTATT+AGG - chr3_1:55360801-55360820 Msa0363180:intron 15.0%
!! AAATGCCAATAATTATAAAA+AGG + chr3_1:55361427-55361446 None:intergenic 15.0%
!!! TCAAAACAAAATTTTGTTTA+TGG + chr3_1:55361546-55361565 None:intergenic 15.0%
!!! TTTTTATTGTCTTTATGAAA+TGG - chr3_1:55361652-55361671 Msa0363180:intron 15.0%
!!! TTTTTGCTAGAAATTTTTTT+AGG + chr3_1:55362126-55362145 None:intergenic 15.0%
!!! AATAGTTGAAACTTTTTTTT+TGG - chr3_1:55362300-55362319 Msa0363180:CDS 15.0%
!!! AATTTGAAGTTTAAAAATCA+AGG - chr3_1:55362837-55362856 Msa0363180:intron 15.0%
!! TTATAAATATTTACGTGTAT+TGG + chr3_1:55362895-55362914 None:intergenic 15.0%
!! AACAAAATTAACACATAACA+AGG + chr3_1:55358816-55358835 None:intergenic 20.0%
!!! TATGATTTTTTTTTTGTGGT+CGG - chr3_1:55358962-55358981 Msa0363180:intron 20.0%
!! AATAATGCATAATATATGCA+AGG + chr3_1:55359002-55359021 None:intergenic 20.0%
!! AGAGATACTAATACTAAAAT+TGG + chr3_1:55359143-55359162 None:intergenic 20.0%
!! TCATGAAACAGTAAATATAT+TGG + chr3_1:55359217-55359236 None:intergenic 20.0%
!! CTTTGTGATATATTCTATAT+AGG - chr3_1:55359645-55359664 Msa0363180:intron 20.0%
!!! ATTATTTTCATAAGCTATCT+TGG + chr3_1:55360398-55360417 None:intergenic 20.0%
!!! GTTTTATCTTTATTAGGATA+TGG - chr3_1:55360807-55360826 Msa0363180:intron 20.0%
!! TAGTTTCAGAAATATTACTT+AGG - chr3_1:55361309-55361328 Msa0363180:CDS 20.0%
!!! TTGTTGTTAACTATATGTAT+CGG + chr3_1:55362657-55362676 None:intergenic 20.0%
!! AAGTATAACTTGAACATATT+AGG + chr3_1:55362802-55362821 None:intergenic 20.0%
!!! TCTCTCTTTAAAATACTTAT+CGG - chr3_1:55363137-55363156 Msa0363180:intron 20.0%
!! TAAAGAATTAGCAATTTCAA+TGG + chr3_1:55363243-55363262 None:intergenic 20.0%
!! TTTACCTATAAAGAAGAATT+TGG + chr3_1:55363629-55363648 None:intergenic 20.0%
!!! AATTTTAAAGCATGACAATT+TGG - chr3_1:55363812-55363831 Msa0363180:five_prime_UTR 20.0%
!!! AGAATCAGAAATTTTAAGGT+GGG + chr3_1:55358541-55358560 None:intergenic 25.0%
!!! AAGAATCAGAAATTTTAAGG+TGG + chr3_1:55358542-55358561 None:intergenic 25.0%
! ATATATTGATATCACTCTTC+TGG - chr3_1:55358853-55358872 Msa0363180:CDS 25.0%
!!! TTTTTTATGACTTCCACTTT+TGG - chr3_1:55358887-55358906 Msa0363180:CDS 25.0%
! TACATTAAGATGTTACAACA+AGG + chr3_1:55358940-55358959 None:intergenic 25.0%
!!! ATGATTTTTTTTTTGTGGTC+GGG - chr3_1:55358963-55358982 Msa0363180:intron 25.0%
! TCTCAAATTATTATCCATGT+CGG - chr3_1:55359501-55359520 Msa0363180:intron 25.0%
! ATAGTTGTTCTATTATTCCA+TGG + chr3_1:55359575-55359594 None:intergenic 25.0%
! TGTGATATATTCTATATAGG+TGG - chr3_1:55359648-55359667 Msa0363180:intron 25.0%
!! TTGAACAATTTGGTTTATCA+AGG + chr3_1:55359960-55359979 None:intergenic 25.0%
! CATACAAACATTGAACAATT+TGG + chr3_1:55359970-55359989 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTTA+TGG + chr3_1:55360080-55360099 None:intergenic 25.0%
! TCATATAAGTGCTTATCTAT+AGG + chr3_1:55360193-55360212 None:intergenic 25.0%
! CTAAGTCATGAATGTAAATA+AGG + chr3_1:55360588-55360607 None:intergenic 25.0%
! CCAAAAGTGAATGAAATATA+TGG + chr3_1:55360673-55360692 None:intergenic 25.0%
!! CCATATATTTCATTCACTTT+TGG - chr3_1:55360670-55360689 Msa0363180:intron 25.0%
!! GTATTAAATTGTGTGTGTTT+TGG - chr3_1:55360702-55360721 Msa0363180:intron 25.0%
!!! TGTTTTATTTTGCATGTCTT+TGG - chr3_1:55360734-55360753 Msa0363180:intron 25.0%
!! TCTAATAACGTTTTTGCATT+TGG - chr3_1:55360843-55360862 Msa0363180:intron 25.0%
! CAACATCGACATTAAATTTA+AGG + chr3_1:55360983-55361002 None:intergenic 25.0%
! TAAATTTAATGTCGATGTTG+TGG - chr3_1:55360983-55361002 Msa0363180:intron 25.0%
! AACAAAAGTAATATTTGCGA+AGG + chr3_1:55361273-55361292 None:intergenic 25.0%
! TTTCAGAAATATTACTTAGG+TGG - chr3_1:55361312-55361331 Msa0363180:CDS 25.0%
! TTACATATCTCGATAATCAT+TGG + chr3_1:55361573-55361592 None:intergenic 25.0%
! GCAAAAAAAAGATTATTGTC+TGG - chr3_1:55362139-55362158 Msa0363180:intron 25.0%
! AAAAGATACAATTTGAGCTT+AGG - chr3_1:55362490-55362509 Msa0363180:exon 25.0%
!!! ATTGTTTTGGCTTAACTTTT+AGG - chr3_1:55362771-55362790 Msa0363180:intron 25.0%
!!! TTGTTTTGGCTTAACTTTTA+GGG - chr3_1:55362772-55362791 Msa0363180:intron 25.0%
!! AACTTGTTCTTAATTCTTCT+TGG - chr3_1:55362990-55363009 Msa0363180:intron 25.0%
!!! AGGACAAAAAGTACTTTTAA+AGG + chr3_1:55363026-55363045 None:intergenic 25.0%
!!! TAACATTGTACTTTTGAAGT+AGG + chr3_1:55363046-55363065 None:intergenic 25.0%
! GCATTATGAGAATAATATCA+AGG - chr3_1:55363208-55363227 Msa0363180:intron 25.0%
!!! TTTTTTCAGTTGCAACTATT+GGG - chr3_1:55363267-55363286 Msa0363180:intron 25.0%
! ATATCATAAATGAGCAGAAA+AGG + chr3_1:55363444-55363463 None:intergenic 25.0%
!!! ACCTTTATTTGAGACTTTTA+TGG - chr3_1:55363600-55363619 Msa0363180:five_prime_UTR 25.0%
! TCCATAAAAGTCTCAAATAA+AGG + chr3_1:55363604-55363623 None:intergenic 25.0%
! TTCTCTTGCAACAAATATTA+GGG - chr3_1:55363660-55363679 Msa0363180:five_prime_UTR 25.0%
!!! GAATCAGAAATTTTAAGGTG+GGG + chr3_1:55358540-55358559 None:intergenic 30.0%
!! AAAGTTATGCTAAGAGCATT+TGG - chr3_1:55358590-55358609 Msa0363180:three_prime_UTR 30.0%
!! CCAAAGCTTTTTCTTTGTAT+AGG + chr3_1:55358741-55358760 None:intergenic 30.0%
CCTATACAAAGAAAAAGCTT+TGG - chr3_1:55358738-55358757 Msa0363180:three_prime_UTR 30.0%
!! ATTTTGTTTGCTCTTATGTC+TGG - chr3_1:55358828-55358847 Msa0363180:CDS 30.0%
!!! TGATTTTTTTTTTGTGGTCG+GGG - chr3_1:55358964-55358983 Msa0363180:intron 30.0%
GCATAATATATGCAAGGTTT+GGG + chr3_1:55358996-55359015 None:intergenic 30.0%
TGCATAATATATGCAAGGTT+TGG + chr3_1:55358997-55359016 None:intergenic 30.0%
!! ATGAATTTAACTGAGTTGGT+AGG + chr3_1:55359025-55359044 None:intergenic 30.0%
CCTTATGAATTTAACTGAGT+TGG + chr3_1:55359029-55359048 None:intergenic 30.0%
CCAACTCAGTTAAATTCATA+AGG - chr3_1:55359026-55359045 Msa0363180:intron 30.0%
AGTATTAGTATCTCTCACAT+AGG - chr3_1:55359148-55359167 Msa0363180:intron 30.0%
!!! TTGTGGTTTATTTTAGCAAG+TGG - chr3_1:55359307-55359326 Msa0363180:intron 30.0%
! TCAGTCACAAATTTTTACCA+TGG - chr3_1:55359388-55359407 Msa0363180:intron 30.0%
ACATAATTCAGTGTAATCGT+AGG + chr3_1:55359476-55359495 None:intergenic 30.0%
ATTCTATATAGGTGGTTCTT+TGG - chr3_1:55359656-55359675 Msa0363180:CDS 30.0%
! AGAGTTTGAAATTTCAAGCA+AGG - chr3_1:55359712-55359731 Msa0363180:CDS 30.0%
! GAGTTTGAAATTTCAAGCAA+GGG - chr3_1:55359713-55359732 Msa0363180:CDS 30.0%
!! AAGATTTTCAAGACTACTAC+TGG - chr3_1:55359895-55359914 Msa0363180:intron 30.0%
TAAGTTGTTTATCGAAAGAC+AGG - chr3_1:55360242-55360261 Msa0363180:CDS 30.0%
AAGTTGTTTATCGAAAGACA+GGG - chr3_1:55360243-55360262 Msa0363180:CDS 30.0%
AATAAACTGAAAACAGCTGT+TGG + chr3_1:55360363-55360382 None:intergenic 30.0%
!!! TTTATTTTGCATGTCTTTGG+AGG - chr3_1:55360737-55360756 Msa0363180:intron 30.0%
! TCTTTGGAGGTTACAAATAA+TGG - chr3_1:55360750-55360769 Msa0363180:intron 30.0%
! TTGGATAGAATCAGATTTTG+TGG + chr3_1:55361188-55361207 None:intergenic 30.0%
GAAATATTACTTAGGTGGTA+AGG - chr3_1:55361317-55361336 Msa0363180:CDS 30.0%
AAAGAAAACTCGAAGTGATT+TGG + chr3_1:55361888-55361907 None:intergenic 30.0%
GACTTGAAAATATCATTGCA+AGG - chr3_1:55362020-55362039 Msa0363180:intron 30.0%
!! GCGTGTTTTAAATTATTGTC+AGG - chr3_1:55362083-55362102 Msa0363180:intron 30.0%
GTTAAGTCAATGAATCTGAT+AGG - chr3_1:55362322-55362341 Msa0363180:CDS 30.0%
TTTGAAGAATTGCACACAAA+AGG - chr3_1:55362387-55362406 Msa0363180:CDS 30.0%
ATACAATTTGAGCTTAGGTT+TGG - chr3_1:55362495-55362514 Msa0363180:five_prime_UTR 30.0%
TACAATTTGAGCTTAGGTTT+GGG - chr3_1:55362496-55362515 Msa0363180:five_prime_UTR 30.0%
TTGTTAACTATATGTATCGG+TGG + chr3_1:55362654-55362673 None:intergenic 30.0%
! TGTGACAAAACACATTGTTT+TGG - chr3_1:55362758-55362777 Msa0363180:intron 30.0%
AAAATCAAGGTTCATGTCAA+AGG - chr3_1:55362850-55362869 Msa0363180:intron 30.0%
TGAATCATTCTTTCTCTCTA+TGG - chr3_1:55362942-55362961 Msa0363180:intron 30.0%
ATTCTTTCTCTCTATGGTAA+GGG - chr3_1:55362948-55362967 Msa0363180:intron 30.0%
AGAATTAGCAATTTCAATGG+TGG + chr3_1:55363240-55363259 None:intergenic 30.0%
!!! GTTTTTTCAGTTGCAACTAT+TGG - chr3_1:55363266-55363285 Msa0363180:intron 30.0%
GACACCAAATTCTTCTTTAT+AGG - chr3_1:55363622-55363641 Msa0363180:five_prime_UTR 30.0%
CTTCTCTTGCAACAAATATT+AGG - chr3_1:55363659-55363678 Msa0363180:five_prime_UTR 30.0%
AAATGTAGGGACAAGAAAGT+AGG - chr3_1:55358393-55358412 Msa0363180:three_prime_UTR 35.0%
TGTCCAAGTAGTAGATAAGA+GGG + chr3_1:55358509-55358528 None:intergenic 35.0%
TTGTCCAAGTAGTAGATAAG+AGG + chr3_1:55358510-55358529 None:intergenic 35.0%
TTCATTAGCATGACCAAAAG+TGG + chr3_1:55358903-55358922 None:intergenic 35.0%
AATTGGAACTGATGCTGAAT+TGG + chr3_1:55359126-55359145 None:intergenic 35.0%
AAATAAACCACAAGTAGCTG+AGG + chr3_1:55359300-55359319 None:intergenic 35.0%
GTGTATGTGTTTCATAACCA+TGG - chr3_1:55359555-55359574 Msa0363180:intron 35.0%
TATATAGGTGGTTCTTTGGT+GGG - chr3_1:55359660-55359679 Msa0363180:CDS 35.0%
AAATTTCAAGCAAGGGAAGA+TGG - chr3_1:55359720-55359739 Msa0363180:CDS 35.0%
!! GGGAAGATGGATTATGTTAA+TGG - chr3_1:55359733-55359752 Msa0363180:CDS 35.0%
! ATGGATTATGTTAATGGACC+AGG - chr3_1:55359739-55359758 Msa0363180:CDS 35.0%
CTTAATTCCATAATCTCTCC+AGG - chr3_1:55360094-55360113 Msa0363180:intron 35.0%
AGTTGTTTATCGAAAGACAG+GGG - chr3_1:55360244-55360263 Msa0363180:CDS 35.0%
!!! AAGCACTTTTGAGACTGTTT+AGG - chr3_1:55360307-55360326 Msa0363180:CDS 35.0%
! GGTCTAATTGATTCTCTGTT+TGG + chr3_1:55360515-55360534 None:intergenic 35.0%
TACAAATAATGGCCTGAGAT+TGG - chr3_1:55360761-55360780 Msa0363180:intron 35.0%
!! AACGTTTTTGCATTTGGTTC+AGG - chr3_1:55360849-55360868 Msa0363180:intron 35.0%
AAAGATACAATACGATCTCC+GGG + chr3_1:55360915-55360934 None:intergenic 35.0%
GAAAGATACAATACGATCTC+CGG + chr3_1:55360916-55360935 None:intergenic 35.0%
CGTATTGTATCTTTCGTGAT+TGG - chr3_1:55360921-55360940 Msa0363180:intron 35.0%
TGATTCTGCACACACTATAA+AGG - chr3_1:55361061-55361080 Msa0363180:intron 35.0%
ATCAAGAAATCAACATGCGA+AGG + chr3_1:55361364-55361383 None:intergenic 35.0%
TTCACTTGCAACGTCATAAT+TGG - chr3_1:55361511-55361530 Msa0363180:intron 35.0%
AAATCCAATACCAGTAGGAA+GGG + chr3_1:55361825-55361844 None:intergenic 35.0%
! TTGAAGCTTCAATGGCTTTA+GGG + chr3_1:55361859-55361878 None:intergenic 35.0%
! TTTGAAGCTTCAATGGCTTT+AGG + chr3_1:55361860-55361879 None:intergenic 35.0%
!! CACTTCGAGTTTTCTTTGAT+TGG - chr3_1:55361891-55361910 Msa0363180:intron 35.0%
TACCTGAAGTTCTACAAGAT+GGG - chr3_1:55361920-55361939 Msa0363180:intron 35.0%
TCTACAAGATGGGAACTTAT+TGG - chr3_1:55361930-55361949 Msa0363180:intron 35.0%
AAGACCATAAAGAAGCTGAA+TGG + chr3_1:55361969-55361988 None:intergenic 35.0%
! AGCTCTTGATCTGATTTTTG+AGG - chr3_1:55361994-55362013 Msa0363180:intron 35.0%
!! CTTGATCTGATTTTTGAGGA+AGG - chr3_1:55361998-55362017 Msa0363180:intron 35.0%
CTTCAATTGCTGGAAAATAG+AGG + chr3_1:55362257-55362276 None:intergenic 35.0%
AAGTCAATGAATCTGATAGG+TGG - chr3_1:55362325-55362344 Msa0363180:CDS 35.0%
AATCTGATAGGTGGTCAATA+TGG - chr3_1:55362334-55362353 Msa0363180:CDS 35.0%
ACTAAACAAAGTTGCTGGAA+AGG - chr3_1:55362519-55362538 Msa0363180:five_prime_UTR 35.0%
! GTTTTCAGAATTGGACATCT+TGG - chr3_1:55362541-55362560 Msa0363180:five_prime_UTR 35.0%
CACATAGCTATCAAGAGTTT+AGG + chr3_1:55362593-55362612 None:intergenic 35.0%
! CTAAACTCTTGATAGCTATG+TGG - chr3_1:55362591-55362610 Msa0363180:intron 35.0%
! TTAACTATATGTATCGGTGG+CGG + chr3_1:55362651-55362670 None:intergenic 35.0%
TTACGTTTCAGTGTTGTATC+AGG - chr3_1:55362696-55362715 Msa0363180:intron 35.0%
TACGTTTCAGTGTTGTATCA+GGG - chr3_1:55362697-55362716 Msa0363180:intron 35.0%
CATTCTTTCTCTCTATGGTA+AGG - chr3_1:55362947-55362966 Msa0363180:intron 35.0%
! TGTTGGTTACCCAGTAAAAT+TGG - chr3_1:55363323-55363342 Msa0363180:intron 35.0%
GTTGGTTACCCAGTAAAATT+GGG - chr3_1:55363324-55363343 Msa0363180:intron 35.0%
ATTGTTCTGTAAGTATGCAC+TGG + chr3_1:55363367-55363386 None:intergenic 35.0%
ATATTCCTCTCATTCCTTCA+AGG - chr3_1:55363385-55363404 Msa0363180:intron 35.0%
CATGTAACTCAAATCCTTGA+AGG + chr3_1:55363402-55363421 None:intergenic 35.0%
! CTTCAAGGATTTGAGTTACA+TGG - chr3_1:55363400-55363419 Msa0363180:intron 35.0%
GTCTTCAAGAGAGTTCAAAA+GGG + chr3_1:55363501-55363520 None:intergenic 35.0%
TCTGTGTGTGTAATTAGTCA+TGG - chr3_1:55363756-55363775 Msa0363180:five_prime_UTR 35.0%
TCTCCCTCTTATCTACTACT+TGG - chr3_1:55358503-55358522 Msa0363180:three_prime_UTR 40.0%
TCTACTACTTGGACAAGACA+TGG - chr3_1:55358514-55358533 Msa0363180:three_prime_UTR 40.0%
! TCAGGTAGTTTGGTGAAGTA+TGG + chr3_1:55358642-55358661 None:intergenic 40.0%
ATACTTCACCAAACTACCTG+AGG - chr3_1:55358641-55358660 Msa0363180:three_prime_UTR 40.0%
TGTTATACCTCAGCTACTTG+TGG - chr3_1:55359290-55359309 Msa0363180:intron 40.0%
! CCATGGATTACTATGAAGCA+CGG - chr3_1:55359405-55359424 Msa0363180:intron 40.0%
TATTATCCATGTCGGCGTAT+CGG - chr3_1:55359509-55359528 Msa0363180:intron 40.0%
TGAAACACATACACCAACAC+TGG + chr3_1:55359549-55359568 None:intergenic 40.0%
CTATATAGGTGGTTCTTTGG+TGG - chr3_1:55359659-55359678 Msa0363180:CDS 40.0%
ACAAAGAGATGGTTTCTTCC+TGG + chr3_1:55359760-55359779 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+AGG - chr3_1:55359763-55359782 Msa0363180:CDS 40.0%
GAAACCATCTCTTTGTTCCA+GGG - chr3_1:55359764-55359783 Msa0363180:CDS 40.0%
AACGATAGTCCTCGTTGTTT+CGG + chr3_1:55359828-55359847 None:intergenic 40.0%
! TTTTGTCAGAGCTGGAATTG+CGG + chr3_1:55359854-55359873 None:intergenic 40.0%
! AGTAGAGTTTTTGTCAGAGC+TGG + chr3_1:55359862-55359881 None:intergenic 40.0%
CCAGTAGTAGGGATAAGAAA+TGG + chr3_1:55359925-55359944 None:intergenic 40.0%
CCATTTCTTATCCCTACTAC+TGG - chr3_1:55359922-55359941 Msa0363180:intron 40.0%
GTGCAACAATACCAGTAGTA+GGG + chr3_1:55359936-55359955 None:intergenic 40.0%
AAGCTATCCTGGAGAGATTA+TGG + chr3_1:55360104-55360123 None:intergenic 40.0%
AATCTCTCCAGGATAGCTTA+TGG - chr3_1:55360105-55360124 Msa0363180:intron 40.0%
ACTCTTTCCATAAGCTATCC+TGG + chr3_1:55360115-55360134 None:intergenic 40.0%
CAGAGAATCAATTAGACCAC+TGG - chr3_1:55360517-55360536 Msa0363180:intron 40.0%
TGATTACTAAGGCAATCCAG+TGG + chr3_1:55360536-55360555 None:intergenic 40.0%
ACTGGATTGCCTTAGTAATC+AGG - chr3_1:55360535-55360554 Msa0363180:intron 40.0%
GAGCATCATCCTGATTACTA+AGG + chr3_1:55360547-55360566 None:intergenic 40.0%
AGCATAGACGATTAAGAGAG+TGG + chr3_1:55360634-55360653 None:intergenic 40.0%
! TTTGCATTTGGTTCAGGTAC+CGG - chr3_1:55360855-55360874 Msa0363180:intron 40.0%
! TTGGCCAATTCAGTTTGCTT+TGG - chr3_1:55360940-55360959 Msa0363180:intron 40.0%
! TGGCCAATTCAGTTTGCTTT+GGG - chr3_1:55360941-55360960 Msa0363180:intron 40.0%
CAACCCAAAGCAAACTGAAT+TGG + chr3_1:55360947-55360966 None:intergenic 40.0%
TCGATGTTGTGGAAAGTGAA+TGG - chr3_1:55360994-55361013 Msa0363180:intron 40.0%
CGATGTTGTGGAAAGTGAAT+GGG - chr3_1:55360995-55361014 Msa0363180:intron 40.0%
GATGTTGTGGAAAGTGAATG+GGG - chr3_1:55360996-55361015 Msa0363180:intron 40.0%
GTTCATAATGAGACTGCAAC+TGG - chr3_1:55361095-55361114 Msa0363180:CDS 40.0%
!! AACTGGTGTCACCAATAACT+TGG - chr3_1:55361112-55361131 Msa0363180:CDS 40.0%
TCTAACTGTGGCCAAGTTAT+TGG + chr3_1:55361126-55361145 None:intergenic 40.0%
GCCACAGTTAGAAAACTTCT+CGG - chr3_1:55361134-55361153 Msa0363180:CDS 40.0%
! ACCGAGAAGTTTTCTAACTG+TGG + chr3_1:55361138-55361157 None:intergenic 40.0%
ATGTGTGTACAATGACAGCT+TGG + chr3_1:55361207-55361226 None:intergenic 40.0%
CTCCTAGTTTCACTGTTCAA+TGG - chr3_1:55361228-55361247 Msa0363180:CDS 40.0%
GACCATTGAACAGTGAAACT+AGG + chr3_1:55361233-55361252 None:intergenic 40.0%
TGCATCTGAAGACTGAAACT+TGG - chr3_1:55361472-55361491 Msa0363180:intron 40.0%
ATGGCACTCACATTGTAGTT+TGG - chr3_1:55361671-55361690 Msa0363180:intron 40.0%
AATACCAGTAGGAAGGGAAA+GGG + chr3_1:55361819-55361838 None:intergenic 40.0%
CAAATCCAATACCAGTAGGA+AGG + chr3_1:55361826-55361845 None:intergenic 40.0%
! TCCTACTGGTATTGGATTTG+TGG - chr3_1:55361826-55361845 Msa0363180:intron 40.0%
ACCACAAATCCAATACCAGT+AGG + chr3_1:55361830-55361849 None:intergenic 40.0%
!!! GGCAGATTTTGAAGCTTCAA+TGG + chr3_1:55361867-55361886 None:intergenic 40.0%
CTACCTGAAGTTCTACAAGA+TGG - chr3_1:55361919-55361938 Msa0363180:intron 40.0%
TTCCCATCTTGTAGAACTTC+AGG + chr3_1:55361925-55361944 None:intergenic 40.0%
CCATAAAGAAGCTGAATGGA+AGG + chr3_1:55361965-55361984 None:intergenic 40.0%
CCTTCCATTCAGCTTCTTTA+TGG - chr3_1:55361962-55361981 Msa0363180:intron 40.0%
ATTGCAAGGCACAATCGTTT+AGG - chr3_1:55362034-55362053 Msa0363180:intron 40.0%
CACGCAAATTATGTCTTACC+TGG + chr3_1:55362068-55362087 None:intergenic 40.0%
AACTCAGTGTCTTCAATTGC+TGG + chr3_1:55362267-55362286 None:intergenic 40.0%
!! TGGTAAATACAGACTTGCTG+TGG - chr3_1:55362354-55362373 Msa0363180:CDS 40.0%
!! TAAATACAGACTTGCTGTGG+AGG - chr3_1:55362357-55362376 Msa0363180:CDS 40.0%
ATTGCACACAAAAGGAAGAG+TGG - chr3_1:55362395-55362414 Msa0363180:CDS 40.0%
GTTGTTCCTCCTTACATTGA+CGG - chr3_1:55362442-55362461 Msa0363180:CDS 40.0%
TTGGGACTAAACAAAGTTGC+TGG - chr3_1:55362514-55362533 Msa0363180:five_prime_UTR 40.0%
! GCTGGAAAGGTTTTCAGAAT+TGG - chr3_1:55362532-55362551 Msa0363180:five_prime_UTR 40.0%
GGCTCCAATTTCATCTATCA+GGG + chr3_1:55362617-55362636 None:intergenic 40.0%
TAATGTGTCAATGTCGTGTC+TGG - chr3_1:55363163-55363182 Msa0363180:intron 40.0%
TGTTAGTGTCTGTGCTTCAT+AGG - chr3_1:55363186-55363205 Msa0363180:intron 40.0%
GAGATGATACTCAGAGATGT+TGG - chr3_1:55363306-55363325 Msa0363180:intron 40.0%
TACCCAGTAAAATTGGGAAG+TGG - chr3_1:55363330-55363349 Msa0363180:intron 40.0%
! CTCCACTTCCCAATTTTACT+GGG + chr3_1:55363335-55363354 None:intergenic 40.0%
! ACTCCACTTCCCAATTTTAC+TGG + chr3_1:55363336-55363355 None:intergenic 40.0%
CAAATCCTTGAAGGAATGAG+AGG + chr3_1:55363393-55363412 None:intergenic 40.0%
CGTCTTCAAGAGAGTTCAAA+AGG + chr3_1:55363502-55363521 None:intergenic 40.0%
GGGACAAGAAAGTAGGAGAA+TGG - chr3_1:55358400-55358419 Msa0363180:three_prime_UTR 45.0%
GGGAGAAAATAAGCATCCTG+AGG + chr3_1:55358489-55358508 None:intergenic 45.0%
!! ATGCTAAGAGCATTTGGCAG+TGG - chr3_1:55358596-55358615 Msa0363180:three_prime_UTR 45.0%
! GTTTGGTGAAGTATGGCAGA+AGG + chr3_1:55358635-55358654 None:intergenic 45.0%
TGAGTGTACCTCAGGTAGTT+TGG + chr3_1:55358652-55358671 None:intergenic 45.0%
AGAGTAAGTGAGTGTACCTC+AGG + chr3_1:55358660-55358679 None:intergenic 45.0%
!! AAGCTTTGGAAGTAGCATGC+AGG - chr3_1:55358752-55358771 Msa0363180:three_prime_UTR 45.0%
CCGTGCTTCATAGTAATCCA+TGG + chr3_1:55359408-55359427 None:intergenic 45.0%
TTTGTCAGAGCTGGAATTGC+GGG + chr3_1:55359853-55359872 None:intergenic 45.0%
CGTGCAACAATACCAGTAGT+AGG + chr3_1:55359937-55359956 None:intergenic 45.0%
CTTAGGTGGTAAGGTTCTGT+TGG - chr3_1:55361326-55361345 Msa0363180:CDS 45.0%
CTGAAGACTGAAACTTGGAC+AGG - chr3_1:55361477-55361496 Msa0363180:intron 45.0%
ATGACACTCCATCAACAAGG+AGG + chr3_1:55361727-55361746 None:intergenic 45.0%
TGGATGACACTCCATCAACA+AGG + chr3_1:55361730-55361749 None:intergenic 45.0%
! ACGGAAATCGAGAGCACAAA+TGG + chr3_1:55361750-55361769 None:intergenic 45.0%
TTGTGCTCTCGATTTCCGTA+TGG - chr3_1:55361751-55361770 Msa0363180:intron 45.0%
TCGATTTCCGTATGGACGAA+TGG - chr3_1:55361759-55361778 Msa0363180:intron 45.0%
CGATTTCCGTATGGACGAAT+GGG - chr3_1:55361760-55361779 Msa0363180:intron 45.0%
GATTTCCGTATGGACGAATG+GGG - chr3_1:55361761-55361780 Msa0363180:intron 45.0%
! GGCTTTCTGAGAACCAGTTA+TGG + chr3_1:55361798-55361817 None:intergenic 45.0%
CAATACCAGTAGGAAGGGAA+AGG + chr3_1:55361820-55361839 None:intergenic 45.0%
CTTTCCCTTCCTACTGGTAT+TGG - chr3_1:55361818-55361837 Msa0363180:intron 45.0%
! AGCTGAATGGAAGGAGTGTA+TGG + chr3_1:55361956-55361975 None:intergenic 45.0%
CTGAAGTTGTTAGAAGGGCA+TGG - chr3_1:55362467-55362486 Msa0363180:CDS 45.0%
ACATCTTGGCAACTTGAACG+AGG - chr3_1:55362555-55362574 Msa0363180:intron 45.0%
GTGGCCCTGATAGATGAAAT+TGG - chr3_1:55362610-55362629 Msa0363180:intron 45.0%
CGGCTCCAATTTCATCTATC+AGG + chr3_1:55362618-55362637 None:intergenic 45.0%
GATGAAATTGGAGCCGTATC+CGG - chr3_1:55362622-55362641 Msa0363180:intron 45.0%
CACATGAGTCATTGTCGAGT+TGG + chr3_1:55363091-55363110 None:intergenic 45.0%
! CAACTATTGGGTTGTCTTGC+TGG - chr3_1:55363279-55363298 Msa0363180:intron 45.0%
GATGCAGTGGAACAGTTCAG+TGG + chr3_1:55358457-55358476 None:intergenic 50.0%
AAGCATCCTGAGGCTGTGAA+TGG + chr3_1:55358479-55358498 None:intergenic 50.0%
TGAAGCACGGACACTCGATT+AGG - chr3_1:55359418-55359437 Msa0363180:intron 50.0%
ACCTGGTCCGGTATGTTAAC+CGG + chr3_1:55359790-55359809 None:intergenic 50.0%
ATAGCACGAATGACCTGGTC+CGG + chr3_1:55359802-55359821 None:intergenic 50.0%
TGCTATGAGCCGAAACAACG+AGG - chr3_1:55359816-55359835 Msa0363180:CDS 50.0%
GCTCTTGCTGAACCAATCTC+AGG + chr3_1:55360776-55360795 None:intergenic 50.0%
CACTCCATCAACAAGGAGGA+GGG + chr3_1:55361723-55361742 None:intergenic 50.0%
ACACTCCATCAACAAGGAGG+AGG + chr3_1:55361724-55361743 None:intergenic 50.0%
CTACTCCCCATTCGTCCATA+CGG + chr3_1:55361769-55361788 None:intergenic 50.0%
GGAGTAGATGTGGCCATAAC+TGG - chr3_1:55361782-55361801 Msa0363180:intron 50.0%
AAAGCCCTTTCCCTTCCTAC+TGG - chr3_1:55361812-55361831 Msa0363180:intron 50.0%
ATCGTTTAGGCACAGCAACC+AGG - chr3_1:55362047-55362066 Msa0363180:intron 50.0%
ACTTCAGCGCCGTCAATGTA+AGG + chr3_1:55362454-55362473 None:intergenic 50.0%
! ACGGCGCTGAAGTTGTTAGA+AGG - chr3_1:55362461-55362480 Msa0363180:CDS 50.0%
! CGGCGCTGAAGTTGTTAGAA+GGG - chr3_1:55362462-55362481 Msa0363180:CDS 50.0%
! ATTGGGTTGTCTTGCTGGTG+TGG - chr3_1:55363284-55363303 Msa0363180:intron 50.0%
GAGGCTGTGAATGGATGCAG+TGG + chr3_1:55358470-55358489 None:intergenic 55.0%
CTGCATCCATTCACAGCCTC+AGG - chr3_1:55358470-55358489 Msa0363180:three_prime_UTR 55.0%
! AATCGTAGGCGTCGTGTCGA+TGG + chr3_1:55359462-55359481 None:intergenic 55.0%
ATCCGTGTCGTGTCCAGTGT+TGG - chr3_1:55359533-55359552 Msa0363180:intron 55.0%
CACCAACACTGGACACGACA+CGG + chr3_1:55359538-55359557 None:intergenic 55.0%
CCATCTCTTTGTTCCAGGGC+CGG - chr3_1:55359768-55359787 Msa0363180:CDS 55.0%
TCCAGGGCCGGTTAACATAC+CGG - chr3_1:55359780-55359799 Msa0363180:CDS 55.0%
GGCTCATAGCACGAATGACC+TGG + chr3_1:55359807-55359826 None:intergenic 55.0%
!! TTGGTTCAGGTACCGGTGCT+TGG - chr3_1:55360862-55360881 Msa0363180:intron 55.0%
!! TGGTTCAGGTACCGGTGCTT+GGG - chr3_1:55360863-55360882 Msa0363180:intron 55.0%
CTGACAAACACGTTGTCGCC+CGG - chr3_1:55360894-55360913 Msa0363180:intron 55.0%
GTGGAAAGTGAATGGGGCTG+TGG - chr3_1:55361002-55361021 Msa0363180:intron 55.0%
GGACGAATGGGGAGTAGATG+TGG - chr3_1:55361772-55361791 Msa0363180:intron 55.0%
!! ACAGACTTGCTGTGGAGGCA+TGG - chr3_1:55362362-55362381 Msa0363180:CDS 55.0%
!! CAGACTTGCTGTGGAGGCAT+GGG - chr3_1:55362363-55362382 Msa0363180:CDS 55.0%
!! AGACTTGCTGTGGAGGCATG+GGG - chr3_1:55362364-55362383 Msa0363180:CDS 55.0%
TCAGCGCCGTCAATGTAAGG+AGG + chr3_1:55362451-55362470 None:intergenic 55.0%
!! TATGTATCGGTGGCGGACAC+CGG + chr3_1:55362644-55362663 None:intergenic 55.0%
CGGATACCGATACGCCGACA+TGG + chr3_1:55359518-55359537 None:intergenic 60.0%
CCGGCCCTGGAACAAAGAGA+TGG + chr3_1:55359771-55359790 None:intergenic 60.0%
TCCGGTATGTTAACCGGCCC+TGG + chr3_1:55359784-55359803 None:intergenic 60.0%
GCCGGTTAACATACCGGACC+AGG - chr3_1:55359786-55359805 Msa0363180:CDS 60.0%
! CAGAGCACTCTCCCAAGCAC+CGG + chr3_1:55360877-55360896 None:intergenic 60.0%
CAAGGAGGAGGGCTGGATGT+TGG + chr3_1:55361712-55361731 None:intergenic 60.0%
CCATCAACAAGGAGGAGGGC+TGG + chr3_1:55361719-55361738 None:intergenic 60.0%
CCAGCCCTCCTCCTTGTTGA+TGG - chr3_1:55361716-55361735 Msa0363180:intron 60.0%
!! TCGGTGGCGGACACCGGATA+CGG + chr3_1:55362638-55362657 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55358379 55363851 55358379 ID=Msa0363180;Name=Msa0363180
chr3_1 mRNA 55358379 55363851 55358379 ID=Msa0363180-mRNA-1;Parent=Msa0363180;Name=Msa0363180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=356|0.8|0.83|1|0.8|0.66|6|438|417
chr3_1 exon 55358379 55358954 55358379 ID=Msa0363180-mRNA-1:exon:10087;Parent=Msa0363180-mRNA-1
chr3_1 exon 55359654 55359864 55359654 ID=Msa0363180-mRNA-1:exon:10086;Parent=Msa0363180-mRNA-1
chr3_1 exon 55360162 55360528 55360162 ID=Msa0363180-mRNA-1:exon:10085;Parent=Msa0363180-mRNA-1
chr3_1 exon 55361075 55361407 55361075 ID=Msa0363180-mRNA-1:exon:10084;Parent=Msa0363180-mRNA-1
chr3_1 exon 55362287 55362563 55362287 ID=Msa0363180-mRNA-1:exon:10083;Parent=Msa0363180-mRNA-1
chr3_1 exon 55363568 55363851 55363568 ID=Msa0363180-mRNA-1:exon:10082;Parent=Msa0363180-mRNA-1
chr3_1 five_prime_UTR 55363568 55363851 55363568 ID=Msa0363180-mRNA-1:five_prime_utr;Parent=Msa0363180-mRNA-1
chr3_1 five_prime_UTR 55362492 55362563 55362492 ID=Msa0363180-mRNA-1:five_prime_utr;Parent=Msa0363180-mRNA-1
chr3_1 CDS 55362287 55362491 55362287 ID=Msa0363180-mRNA-1:cds;Parent=Msa0363180-mRNA-1
chr3_1 CDS 55361075 55361407 55361075 ID=Msa0363180-mRNA-1:cds;Parent=Msa0363180-mRNA-1
chr3_1 CDS 55360162 55360528 55360162 ID=Msa0363180-mRNA-1:cds;Parent=Msa0363180-mRNA-1
chr3_1 CDS 55359654 55359864 55359654 ID=Msa0363180-mRNA-1:cds;Parent=Msa0363180-mRNA-1
chr3_1 CDS 55358817 55358954 55358817 ID=Msa0363180-mRNA-1:cds;Parent=Msa0363180-mRNA-1
chr3_1 three_prime_UTR 55358379 55358816 55358379 ID=Msa0363180-mRNA-1:three_prime_utr;Parent=Msa0363180-mRNA-1
Gene Sequence

>Msa0363180

ATGGATTATGTTAATGGACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCCGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGATATGGTTACGATGTTATTTCTAATAACGTTTTTGCATTTGGTTCAGGTACCGGTGCTTGGGAGAGTGCTCTGACAAACACGTTGTCGCCCGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCTGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATACACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATATCATTGCAAGGCACAATCGTTTAGGCACAGCAACCAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGCGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGGTTTTCAGAATTGGACATCTTGGCAACTTGAACGAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>Msa0363180

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGYGYDVISNNVFAFGSGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGCGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI*