AlfalfaGEDB | Msa0270090

M. sativa cultivar zhongmu-4 / Msa0270090

KEGG: K05016
GO: GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0008150 GO:0008308 GO:0008509 GO:0009705 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805 GO:1902476
PFAM: PF00654.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270090	XP_003592890.2	97.903	763	14	2	4	766	1	761	0.0	1521

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270090	sp\|Q96282\|CLCC_ARATH	74.935	766	175	6	9	766	23	779	0.0	1129

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270090	A0A396J3P4	97.903	763	14	2	4	766	1	761	0.0	1521

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0270090	0.817531	3.142463e-52	-8.615850e-47
Msa0005500	Msa0270090	0.801945	7.085314e-49	-8.615850e-47
Msa0007810	Msa0270090	0.831312	1.792935e-55	-8.615850e-47
Msa0011060	Msa0270090	0.826177	3.129532e-54	-8.615850e-47
Msa0011100	Msa0270090	0.817215	3.700698e-52	-8.615850e-47
Msa0014970	Msa0270090	0.805827	1.105985e-49	-8.615850e-47
Msa0026120	Msa0270090	0.827507	1.506200e-54	-8.615850e-47
Msa0037040	Msa0270090	0.807916	4.000167e-50	-8.615850e-47
Msa0039780	Msa0270090	0.810821	9.524840e-51	-8.615850e-47
Msa0046020	Msa0270090	0.815023	1.143159e-51	-8.615850e-47

Showing 1 to 10 of 248 entries

Previous1 2 3 4 5…25Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270090	MtrunA17_Chr2g0276881	97.903	763	14	2	4	766	1	761	0.0	1521
Msa0270090	MtrunA17_Chr4g0076971	78.828	751	145	6	21	766	34	775	0.0	1139
Msa0270090	MtrunA17_Chr6g0477391	68.609	755	223	6	16	766	49	793	0.0	1011
Msa0270090	MtrunA17_Chr4g0064521	59.463	745	293	5	21	762	16	754	0.0	840
Msa0270090	MtrunA17_Chr7g0225591	53.421	760	330	10	21	766	41	790	0.0	800
Msa0270090	MtrunA17_Chr6g0459451	53.238	772	343	8	3	766	8	769	0.0	797
Msa0270090	MtrunA17_Chr0c12g0493681	74.118	510	120	7	21	525	34	536	0.0	718
Msa0270090	MtrunA17_Chr5g0394301	48.066	724	345	15	46	751	46	756	0.0	605
Msa0270090	MtrunA17_Chr5g0396861	71.667	60	14	1	701	760	57	113	7.73e-21	89.4

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0270090	AT5G49890.1	74.935	766	175	6	9	766	23	779	1129
Msa0270090	AT5G33280.1	60.292	753	290	5	17	766	7	753	898
Msa0270090	AT3G27170.1	53.633	757	331	7	21	766	28	775	795
Msa0270090	AT5G40890.1	52.294	763	350	6	9	766	17	770	785
Msa0270090	AT5G40890.2	53.096	646	289	6	126	766	2	638	671
Msa0270090	AT5G26240.1	49.169	722	337	14	46	751	44	751	581
Msa0270090	AT5G26240.2	49.169	722	337	14	46	751	44	751	581

Showing 1 to 7 of 7 entries

Previous1Next

Find 226 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGGCTCATCAACTAC+TGG	0.501049	2_3:-1400552	None:intergenic
AAAGTGTGTGCCATGTCCAG+GGG	0.681077	2_3:+1399858	Msa0270090:CDS
AAATATAACTGCGAGGAGGT+CGG	0.525416	2_3:-1399352	None:intergenic
AAATCCGGCGTTAGCAGAGG+TGG	0.554279	2_3:-1400019	None:intergenic
AACAACTGCTACTACTGCAG+TGG	0.616642	2_3:-1399217	None:intergenic
AACACCAACCCGCACAACTC+GGG	0.524685	2_3:-1400585	None:intergenic
AACCATCGTTGAATAGGTTG+CGG	0.554720	2_3:-1399996	None:intergenic
AACGATGGCGAGTTGAGAAG+AGG	0.626560	2_3:-1395687	None:intergenic
AACTCGGGAGCATCCGTCAA+AGG	0.551479	2_3:-1400570	None:intergenic
AACTGCGAGGAGGTCGGGTG+TGG	0.515931	2_3:-1399346	None:intergenic

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAGGTTTGCCAAAATTT+AGG	-	chr2_3:1395913-1395932	None:intergenic	30.0%
GCAGCAATTTAAATTGAAAC+AGG	-	chr2_3:1396076-1396095	None:intergenic	30.0%
TTGTTAGAAAACTACCATTG+TGG	+	chr2_3:1396505-1396524	Msa0270090:intron	30.0%
TGCATATAAAAGATGTAACG+CGG	-	chr2_3:1396840-1396859	None:intergenic	30.0%
CAGTGCAGGAAAAAAAATTA+GGG	-	chr2_3:1397108-1397127	None:intergenic	30.0%
TCAGTGCAGGAAAAAAAATT+AGG	-	chr2_3:1397109-1397128	None:intergenic	30.0%
AAATTGGGAACTTCTAAGTT+TGG	-	chr2_3:1397547-1397566	None:intergenic	30.0%
TTGTCTGAGTATGATATGTA+GGG	-	chr2_3:1398067-1398086	None:intergenic	30.0%
TGAGAATGATCTATTGAAAC+AGG	+	chr2_3:1398446-1398465	Msa0270090:CDS	30.0%
CATTGATGCACATTCTATAT+TGG	+	chr2_3:1398773-1398792	Msa0270090:CDS	30.0%

Showing 1 to 10 of 399 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	1395424	1401165	1395424	ID=Msa0270090;Name=Msa0270090
chr2_3	mRNA	1395424	1401165	1395424	ID=Msa0270090-mRNA-1;Parent=Msa0270090;Name=Msa0270090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169\|1\|0.8\|1\|1\|1\|5\|55\|766
chr2_3	exon	1395424	1395747	1395424	ID=Msa0270090-mRNA-1:exon:574;Parent=Msa0270090-mRNA-1
chr2_3	exon	1398440	1398818	1398440	ID=Msa0270090-mRNA-1:exon:575;Parent=Msa0270090-mRNA-1
chr2_3	exon	1398919	1399457	1398919	ID=Msa0270090-mRNA-1:exon:576;Parent=Msa0270090-mRNA-1
chr2_3	exon	1399774	1400911	1399774	ID=Msa0270090-mRNA-1:exon:577;Parent=Msa0270090-mRNA-1
chr2_3	exon	1401021	1401165	1401021	ID=Msa0270090-mRNA-1:exon:578;Parent=Msa0270090-mRNA-1
chr2_3	five_prime_UTR	1395424	1395592	1395424	ID=Msa0270090-mRNA-1:five_prime_utr;Parent=Msa0270090-mRNA-1
chr2_3	CDS	1395593	1395747	1395593	ID=Msa0270090-mRNA-1:cds;Parent=Msa0270090-mRNA-1
chr2_3	CDS	1398440	1398818	1398440	ID=Msa0270090-mRNA-1:cds;Parent=Msa0270090-mRNA-1
chr2_3	CDS	1398919	1399457	1398919	ID=Msa0270090-mRNA-1:cds;Parent=Msa0270090-mRNA-1
chr2_3	CDS	1399774	1400911	1399774	ID=Msa0270090-mRNA-1:cds;Parent=Msa0270090-mRNA-1
chr2_3	CDS	1401021	1401110	1401021	ID=Msa0270090-mRNA-1:cds;Parent=Msa0270090-mRNA-1
chr2_3	three_prime_UTR	1401111	1401165	1401111	ID=Msa0270090-mRNA-1:three_prime_utr;Parent=Msa0270090-mRNA-1

Gene Sequence

>Msa0270090

ATGGACATGATGGAGTCATTAACAGAGGAAAGGATGATTGAGATAAGAGATGATGATCACAAACAGCCGTTACTTCTCAGAAGCAGAATTAATACCTCTTCTCAACTCGCCATCGTTGGGGCCAATATTTGCCCTATTCAGAGTCTTGATTACGAGTTAATTGAGAATGATCTATTGAAACAGGACTGGAGGTCAAGAACAAAGGTTGAGATATACCAATATGTTGTTCTGAAGTGGACCCTTGCACTTCTTATTGGTTTAATTACAGGACTTGTTGGGTTCTTTAATAACCTTGGAGTTGAGAATATTGCTGGTTTCAAACTTCTACTCACCAACAATCTCATGCTCAAGCAAAAGTATCACGAGGCATTTGCAGTGTACGTTGGTTGTAACATGATTTTAGGGGTTGGTGCTGCAGCCCTGTGTGCTTACATTGCTCCTGCAGCTGCTGGCTCTGGCATACCAGAGGTGAAAGCATACCTCAACGGCATTGATGCACATTCTATATTGGCCCCATCTACCCTCTTTGTCAAGATATTTGGTTCGATTTTAGGAGTTGCTGCTGGTTTTATTGTGGGGAAAGAAGGACCCATGGTTCATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGTGGTTCGCGTAAATATCGACTCACCTGGAAATGGCTCAGATACTTCAAAAATGATAGAGATAGGAGGGATTTGATTACGTGCGGTGCAGCTGCTGGTGTTGCCGCAGCCTTCCGTGCCCCCGTTGGTGGTGTTCTGTTCGCACTCGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGCACATTCTTTACCACTGCAGTAGTAGCAGTTGTTTTGAGGAGTCTTATGCAATTCTGTCATCAGGGAGGAGGCAGATGTGGTCTGTTTGGAGAAGGGGGACTCATCATGTTTGATGTTAATTCTGCAAAGCCTGCCTACACCACACCCGACCTCCTCGCAGTTATATTTCTTGGAGTCATTGGAGGTCTCATGGGAAGCCTTTACAATTATCTTGTCGATAAAGTCCTTCGCACTTACGGCGCTATAAATGAGAGAGGTCCAATATTCAAGATTATACTGGTGATGATTATCTCGTTTGTAACCTCCTGTATTCGATTTGGGCTTCCATTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGTCCCAGCTCCCCAACCGCAGGCTTCTCAATACACTACGACAATTTTCAGTGTCCACCAAACCACTACAATGATCTCAGCTCTCTATTTTTCACTACCAACGACGATGCCATCCGCAACCTATTCAACGATGGTTCCACCTCTGCTAACGCCGGATTTCAGCTATCAAGTCTCTTAGTTTTCTTTGTGGCGATATACTTGCTTGGAATTGTGACATACGGTGTTGCCATTCCCTCTGGACTCTTCATTCCCGTCATACTTGCCGGAGCTTCTTACGGGCGTCTTATAGGGACTGTGATGGCTCCATTCACAGCTCTGGATACGGGTTTGTTTGCTCTCCTTGGAGCCGCATCTTTCCTTGGTGGCACCATGAGAATGACAGTTTCTCTATGTGTCATACTTCTTGAACTCACTAATAACTTGTTGATGCTACCATTGGTCATGTTGGTTCTCCTCGTTTCTAAGACAGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAGTTGAAGGGACTACCTTATATGGAAGCACATGCAGAGCCATACATGAGGAATTTAGTGGCAGGGGATGTTGTTTCTGGTCCACTGTTTTCTTTTTGTGGGATCGAAAAAGTGGGGAATATATTGCACGCTTTGAAAGTGACAGAACATCACGGATTTCCAGTAGTTGATGAGCCTCCTTTGACGGATGCTCCCGAGTTGTGCGGGTTGGTGTTGAGGTCTCATCTTTTGGTGCTTCTCAAGCACAAGACATTGTTCACTAGGGAGAGGGTGATGACAGGGTCTACTATTGTGAACAAGGTTAAGGCAAGGGATTTTGCAAAACCAGGTTTGGGAAGAGGGATAAGGGTGGAGGATTTGGACATTTCACAAGAGGAGATGGAAATGTTTGTTGATCTTCATCCAATCACAAATACTTCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCCGCTCTTCTTTTTCGGGAGCTTGGACTCAGGCATTTGCTAGTTGTGCCTAAGAAACCAGGAAGGCCTCCAATTGTTGGGATCCTGACAAGGCATGATTTCATGCACGACTATATCTTGGGTCTATTCCCCAACTTGAATCCCCGCAAGTAG

Protein sequence

>Msa0270090

MDMMESLTEERMIEIRDDDHKQPLLLRSRINTSSQLAIVGANICPIQSLDYELIENDLLKQDWRSRTKVEIYQYVVLKWTLALLIGLITGLVGFFNNLGVENIAGFKLLLTNNLMLKQKYHEAFAVYVGCNMILGVGAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVAAGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLMQFCHQGGGRCGLFGEGGLIMFDVNSAKPAYTTPDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYGAINERGPIFKIILVMIISFVTSCIRFGLPLLSKCVPCPGECPSSPTAGFSIHYDNFQCPPNHYNDLSSLFFTTNDDAIRNLFNDGSTSANAGFQLSSLLVFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLIGTVMAPFTALDTGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLVSKTVADCFNKGVYDQIVELKGLPYMEAHAEPYMRNLVAGDVVSGPLFSFCGIEKVGNILHALKVTEHHGFPVVDEPPLTDAPELCGLVLRSHLLVLLKHKTLFTRERVMTGSTIVNKVKARDFAKPGLGRGIRVEDLDISQEEMEMFVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGRPPIVGILTRHDFMHDYILGLFPNLNPRK*