Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429890 | XP_003592890.2 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429890 | sp|Q96282|CLCC_ARATH | 74.935 | 766 | 175 | 6 | 9 | 766 | 23 | 779 | 0.0 | 1129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429890 | A0A396J3P4 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1429890 | 0.802730 | 4.884509e-49 | -8.615850e-47 |
| Msa0011060 | Msa1429890 | 0.800531 | 1.379459e-48 | -8.615850e-47 |
| Msa0026120 | Msa1429890 | 0.837316 | 5.584191e-57 | -8.615850e-47 |
| Msa0049670 | Msa1429890 | 0.818197 | 2.222666e-52 | -8.615850e-47 |
| Msa0056220 | Msa1429890 | 0.817037 | 4.059787e-52 | -8.615850e-47 |
| Msa0060080 | Msa1429890 | 0.801484 | 8.808743e-49 | -8.615850e-47 |
| Msa0109070 | Msa1429890 | 0.807740 | 4.360193e-50 | -8.615850e-47 |
| Msa0112800 | Msa1429890 | 0.828540 | 8.492995e-55 | -8.615850e-47 |
| Msa1363310 | Msa1429890 | 0.807002 | 6.251466e-50 | -8.615850e-47 |
| Msa1371260 | Msa1429890 | 0.804160 | 2.468453e-49 | -8.615850e-47 |
| Msa1374210 | Msa1429890 | 0.810238 | 1.273266e-50 | -8.615850e-47 |
| Msa1381720 | Msa1429890 | 0.809089 | 2.247398e-50 | -8.615850e-47 |
| Msa1386580 | Msa1429890 | 0.807951 | 3.933351e-50 | -8.615850e-47 |
| Msa1392270 | Msa1429890 | 0.979760 | 1.109607e-148 | -8.615850e-47 |
| Msa1419040 | Msa1429890 | 0.829764 | 4.288684e-55 | -8.615850e-47 |
| Msa1426690 | Msa1429890 | 0.809679 | 1.679280e-50 | -8.615850e-47 |
| Msa1429890 | Msa1433060 | 0.815104 | 1.096792e-51 | -8.615850e-47 |
| Msa1429890 | Msa1433380 | 0.803798 | 2.934576e-49 | -8.615850e-47 |
| Msa1429890 | Msa1438410 | 0.816012 | 6.884107e-52 | -8.615850e-47 |
| Msa1429890 | Msa1446220 | 0.810333 | 1.214488e-50 | -8.615850e-47 |
| Msa1429890 | Msa1459630 | 0.801951 | 7.066873e-49 | -8.615850e-47 |
| Msa0622400 | Msa1429890 | 0.827621 | 1.414214e-54 | -8.615850e-47 |
| Msa0625550 | Msa1429890 | 0.818748 | 1.667392e-52 | -8.615850e-47 |
| Msa0648160 | Msa1429890 | 0.817541 | 3.125428e-52 | -8.615850e-47 |
| Msa0648260 | Msa1429890 | 0.809455 | 1.876788e-50 | -8.615850e-47 |
| Msa0706700 | Msa1429890 | 0.816228 | 6.160872e-52 | -8.615850e-47 |
| Msa0713530 | Msa1429890 | 0.851947 | 6.368811e-61 | -8.615850e-47 |
| Msa0747660 | Msa1429890 | 0.825131 | 5.541446e-54 | -8.615850e-47 |
| Msa0755590 | Msa1429890 | 0.841982 | 3.415073e-58 | -8.615850e-47 |
| Msa0762480 | Msa1429890 | 0.803515 | 3.360387e-49 | -8.615850e-47 |
| Msa0790520 | Msa1429890 | 0.979010 | 4.881191e-147 | -8.615850e-47 |
| Msa0797240 | Msa1429890 | 0.864731 | 9.847156e-65 | -8.615850e-47 |
| Msa0835010 | Msa1429890 | 0.855117 | 7.823600e-62 | -8.615850e-47 |
| Msa0842370 | Msa1429890 | 0.802756 | 4.823448e-49 | -8.615850e-47 |
| Msa0137810 | Msa1429890 | 0.822894 | 1.855715e-53 | -8.615850e-47 |
| Msa0151780 | Msa1429890 | 0.800653 | 1.302744e-48 | -8.615850e-47 |
| Msa0166580 | Msa1429890 | 0.830238 | 3.286063e-55 | -8.615850e-47 |
| Msa0187560 | Msa1429890 | 0.818623 | 1.779643e-52 | -8.615850e-47 |
| Msa0188840 | Msa1429890 | 0.833355 | 5.593414e-56 | -8.615850e-47 |
| Msa0198140 | Msa1429890 | 0.807192 | 5.699295e-50 | -8.615850e-47 |
| Msa0198220 | Msa1429890 | 0.805154 | 1.531200e-49 | -8.615850e-47 |
| Msa0218430 | Msa1429890 | 0.815460 | 9.141999e-52 | -8.615850e-47 |
| Msa0218480 | Msa1429890 | 0.810881 | 9.247706e-51 | -8.615850e-47 |
| Msa0218590 | Msa1429890 | 0.813665 | 2.281957e-51 | -8.615850e-47 |
| Msa0228360 | Msa1429890 | 0.810319 | 1.222881e-50 | -8.615850e-47 |
| Msa0229420 | Msa1429890 | 0.800005 | 1.765588e-48 | -8.615850e-47 |
| Msa1245870 | Msa1429890 | 0.804863 | 1.760725e-49 | -8.615850e-47 |
| Msa1251960 | Msa1429890 | 0.813929 | 1.995957e-51 | -8.615850e-47 |
| Msa1255500 | Msa1429890 | 0.806194 | 9.257791e-50 | -8.615850e-47 |
| Msa1257930 | Msa1429890 | 0.817853 | 2.658545e-52 | -8.615850e-47 |
| Msa1257960 | Msa1429890 | 0.843059 | 1.768112e-58 | -8.615850e-47 |
| Msa1262740 | Msa1429890 | 0.827140 | 1.844159e-54 | -8.615850e-47 |
| Msa1277830 | Msa1429890 | 0.803458 | 3.452602e-49 | -8.615850e-47 |
| Msa1277890 | Msa1429890 | 0.814786 | 1.289961e-51 | -8.615850e-47 |
| Msa1277930 | Msa1429890 | 0.805819 | 1.110481e-49 | -8.615850e-47 |
| Msa1297540 | Msa1429890 | 0.841598 | 4.312800e-58 | -8.615850e-47 |
| Msa1298540 | Msa1429890 | 0.804002 | 2.662252e-49 | -8.615850e-47 |
| Msa1298980 | Msa1429890 | 0.835604 | 1.523118e-56 | -8.615850e-47 |
| Msa1303190 | Msa1429890 | 0.807220 | 5.622702e-50 | -8.615850e-47 |
| Msa1307800 | Msa1429890 | 0.804450 | 2.147682e-49 | -8.615850e-47 |
| Msa1316880 | Msa1429890 | 0.828991 | 6.607057e-55 | -8.615850e-47 |
| Msa1329660 | Msa1429890 | 0.800445 | 1.436307e-48 | -8.615850e-47 |
| Msa1330900 | Msa1429890 | 0.802996 | 4.302885e-49 | -8.615850e-47 |
| Msa1333430 | Msa1429890 | 0.812423 | 4.271296e-51 | -8.615850e-47 |
| Msa0372990 | Msa1429890 | 0.802851 | 4.611013e-49 | -8.615850e-47 |
| Msa0388790 | Msa1429890 | 0.832562 | 8.807034e-56 | -8.615850e-47 |
| Msa0426990 | Msa1429890 | 0.806823 | 6.820679e-50 | -8.615850e-47 |
| Msa0429100 | Msa1429890 | 0.804771 | 1.841230e-49 | -8.615850e-47 |
| Msa0429130 | Msa1429890 | 0.803617 | 3.201159e-49 | -8.615850e-47 |
| Msa0431560 | Msa1429890 | 0.804010 | 2.652631e-49 | -8.615850e-47 |
| Msa0475700 | Msa1429890 | 0.803034 | 4.226631e-49 | -8.615850e-47 |
| Msa0476570 | Msa1429890 | 0.802682 | 4.995451e-49 | -8.615850e-47 |
| Msa0481620 | Msa1429890 | 0.817282 | 3.575961e-52 | -8.615850e-47 |
| Msa1033460 | Msa1429890 | 0.808271 | 3.361938e-50 | -8.615850e-47 |
| Msa1038420 | Msa1429890 | 0.819867 | 9.270434e-53 | -8.615850e-47 |
| Msa1065090 | Msa1429890 | 0.803185 | 3.933795e-49 | -8.615850e-47 |
| Msa1071460 | Msa1429890 | 0.802739 | 4.862614e-49 | -8.615850e-47 |
| Msa1072640 | Msa1429890 | 0.807131 | 5.871878e-50 | -8.615850e-47 |
| Msa1089130 | Msa1429890 | 0.856671 | 2.747381e-62 | -8.615850e-47 |
| Msa0258280 | Msa1429890 | 0.815592 | 8.544061e-52 | -8.615850e-47 |
| Msa0263520 | Msa1429890 | 0.801282 | 9.693518e-49 | -8.615850e-47 |
| Msa0270090 | Msa1429890 | 0.982007 | 5.356434e-154 | -8.615850e-47 |
| Msa0270640 | Msa1429890 | 0.813617 | 2.337320e-51 | -8.615850e-47 |
| Msa0278340 | Msa1429890 | 0.808170 | 3.533038e-50 | -8.615850e-47 |
| Msa0297320 | Msa1429890 | 0.806138 | 9.512965e-50 | -8.615850e-47 |
| Msa0298590 | Msa1429890 | 0.810207 | 1.292775e-50 | -8.615850e-47 |
| Msa0308300 | Msa1429890 | 0.804962 | 1.679559e-49 | -8.615850e-47 |
| Msa0338670 | Msa1429890 | 0.801803 | 7.577301e-49 | -8.615850e-47 |
| Msa1113780 | Msa1429890 | 0.818772 | 1.646104e-52 | -8.615850e-47 |
| Msa1129320 | Msa1429890 | 0.824824 | 6.545202e-54 | -8.615850e-47 |
| Msa1147600 | Msa1429890 | 0.800562 | 1.360010e-48 | -8.615850e-47 |
| Msa1160470 | Msa1429890 | 0.812467 | 4.177501e-51 | -8.615850e-47 |
| Msa1160480 | Msa1429890 | 0.844038 | 9.682416e-59 | -8.615850e-47 |
| Msa1172120 | Msa1429890 | 0.802318 | 5.938207e-49 | -8.615850e-47 |
| Msa1182960 | Msa1429890 | 0.806059 | 9.884117e-50 | -8.615850e-47 |
| Msa1186010 | Msa1429890 | 0.808038 | 3.769259e-50 | -8.615850e-47 |
| Msa1198280 | Msa1429890 | 0.805196 | 1.500022e-49 | -8.615850e-47 |
| Msa1203210 | Msa1429890 | 0.807656 | 4.544709e-50 | -8.615850e-47 |
| Msa1203840 | Msa1429890 | 0.801028 | 1.092518e-48 | -8.615850e-47 |
| Msa1207710 | Msa1429890 | 0.843346 | 1.482992e-58 | -8.615850e-47 |
| Msa1207760 | Msa1429890 | 0.848543 | 5.732331e-60 | -8.615850e-47 |
| Msa1218720 | Msa1429890 | 0.803541 | 3.318387e-49 | -8.615850e-47 |
| Msa1221490 | Msa1429890 | 0.822894 | 1.855072e-53 | -8.615850e-47 |
| Msa1222050 | Msa1429890 | 0.816389 | 5.670188e-52 | -8.615850e-47 |
| Msa0486850 | Msa1429890 | 0.817675 | 2.915421e-52 | -8.615850e-47 |
| Msa0526520 | Msa1429890 | 0.808649 | 2.791932e-50 | -8.615850e-47 |
| Msa0554410 | Msa1429890 | 0.821743 | 3.433507e-53 | -8.615850e-47 |
| Msa0564580 | Msa1429890 | 0.806816 | 6.844494e-50 | -8.615850e-47 |
| Msa0571900 | Msa1429890 | 0.812794 | 3.543507e-51 | -8.615850e-47 |
| Msa0577960 | Msa1429890 | 0.819147 | 1.353190e-52 | -8.615850e-47 |
| Msa0848860 | Msa1429890 | 0.804805 | 1.810654e-49 | -8.615850e-47 |
| Msa0869320 | Msa1429890 | 0.809205 | 2.122443e-50 | -8.615850e-47 |
| Msa0938190 | Msa1429890 | 0.806378 | 8.469747e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429890 | MtrunA17_Chr2g0276881 | 97.903 | 763 | 14 | 2 | 4 | 766 | 1 | 761 | 0.0 | 1521 |
| Msa1429890 | MtrunA17_Chr4g0076971 | 78.828 | 751 | 145 | 6 | 21 | 766 | 34 | 775 | 0.0 | 1139 |
| Msa1429890 | MtrunA17_Chr6g0477391 | 68.609 | 755 | 223 | 6 | 16 | 766 | 49 | 793 | 0.0 | 1011 |
| Msa1429890 | MtrunA17_Chr4g0064521 | 59.463 | 745 | 293 | 5 | 21 | 762 | 16 | 754 | 0.0 | 840 |
| Msa1429890 | MtrunA17_Chr7g0225591 | 53.421 | 760 | 330 | 10 | 21 | 766 | 41 | 790 | 0.0 | 800 |
| Msa1429890 | MtrunA17_Chr6g0459451 | 53.238 | 772 | 343 | 8 | 3 | 766 | 8 | 769 | 0.0 | 797 |
| Msa1429890 | MtrunA17_Chr0c12g0493681 | 74.118 | 510 | 120 | 7 | 21 | 525 | 34 | 536 | 0.0 | 718 |
| Msa1429890 | MtrunA17_Chr5g0394301 | 48.066 | 724 | 345 | 15 | 46 | 751 | 46 | 756 | 0.0 | 605 |
| Msa1429890 | MtrunA17_Chr5g0396861 | 71.667 | 60 | 14 | 1 | 701 | 760 | 57 | 113 | 7.73e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429890 | AT5G49890.1 | 74.935 | 766 | 175 | 6 | 9 | 766 | 23 | 779 | 0.0 | 1129 |
| Msa1429890 | AT5G33280.1 | 60.292 | 753 | 290 | 5 | 17 | 766 | 7 | 753 | 0.0 | 898 |
| Msa1429890 | AT3G27170.1 | 53.633 | 757 | 331 | 7 | 21 | 766 | 28 | 775 | 0.0 | 795 |
| Msa1429890 | AT5G40890.1 | 52.294 | 763 | 350 | 6 | 9 | 766 | 17 | 770 | 0.0 | 785 |
| Msa1429890 | AT5G40890.2 | 53.096 | 646 | 289 | 6 | 126 | 766 | 2 | 638 | 0.0 | 671 |
| Msa1429890 | AT5G26240.1 | 49.169 | 722 | 337 | 14 | 46 | 751 | 44 | 751 | 0.0 | 581 |
| Msa1429890 | AT5G26240.2 | 49.169 | 722 | 337 | 14 | 46 | 751 | 44 | 751 | 0.0 | 581 |
Find 226 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAGGGGATGTTGTTTC+TGG | 0.134484 | tig0026573:+20962 | Msa1429890:CDS |
| CTCCTCGCAGTTATATTTCT+TGG | 0.211442 | tig0026573:+19873 | Msa1429890:CDS |
| AGGGATAAGGGTGGAGGATT+TGG | 0.218217 | tig0026573:+21243 | Msa1429890:CDS |
| GCTTCTTACGGGCGTCTTAT+AGG | 0.220379 | tig0026573:+20662 | Msa1429890:CDS |
| TGGACCCTTGCACTTCTTAT+TGG | 0.235718 | tig0026573:+19035 | Msa1429890:CDS |
| CTTCTTATTGGTTTAATTAC+AGG | 0.242997 | tig0026573:+19047 | Msa1429890:CDS |
| GCTCCTGCAGCTGCTGGCTC+TGG | 0.249646 | tig0026573:+19236 | Msa1429890:CDS |
| TGAAGTGGTGGACAGATATT+TGG | 0.256773 | tig0026573:+19420 | Msa1429890:intron |
| TACATTGCTCCTGCAGCTGC+TGG | 0.262305 | tig0026573:+19230 | Msa1429890:CDS |
| TCTGCATGTGCTTCCATATA+AGG | 0.301605 | tig0026573:-20920 | None:intergenic |
| TAACCTCCTGTATTCGATTT+GGG | 0.302618 | tig0026573:+20333 | Msa1429890:CDS |
| TTATTCATGTGGCTACTTGC+GGG | 0.305540 | tig0026573:-21612 | None:intergenic |
| GTAACCTCCTGTATTCGATT+TGG | 0.310912 | tig0026573:+20332 | Msa1429890:CDS |
| CATTGATGCACATTCTATAT+TGG | 0.317699 | tig0026573:+19289 | Msa1429890:CDS |
| ACCAGTATAATCTTGAATAT+TGG | 0.317913 | tig0026573:-20293 | None:intergenic |
| GAAGTATCTGAGCCATTTCC+AGG | 0.320283 | tig0026573:-19559 | None:intergenic |
| TTACTTACTCCTGGTTTCTT+AGG | 0.328013 | tig0026573:-21409 | None:intergenic |
| GAAGCCTGCGGTTGGGGAGC+TGG | 0.334474 | tig0026573:-20399 | None:intergenic |
| TACTTGCGGGGATTCAAGTT+GGG | 0.335456 | tig0026573:-21599 | None:intergenic |
| TTCATTCCCGTCATACTTGC+CGG | 0.335866 | tig0026573:+20638 | Msa1429890:CDS |
| GTTATATTTCTTGGAGTCAT+TGG | 0.336790 | tig0026573:+19882 | Msa1429890:CDS |
| ATTGTTTCAACAACAGTATA+TGG | 0.343669 | tig0026573:-21325 | None:intergenic |
| GTATCGTATAATAATAATAA+TGG | 0.352014 | tig0026573:-16412 | None:intergenic |
| CTTGGAGCCGCATCTTTCCT+TGG | 0.354614 | tig0026573:+20734 | Msa1429890:CDS |
| ACGGGTTTGTTTGCTCTCCT+TGG | 0.355427 | tig0026573:+20716 | Msa1429890:CDS |
| ACCTTGACAAAGAGGGTAGA+TGG | 0.360767 | tig0026573:-19314 | None:intergenic |
| GTTGAAGGGACTACCTTATA+TGG | 0.362650 | tig0026573:+20907 | Msa1429890:CDS |
| CTTGGAGTTGAGAATATTGC+TGG | 0.363001 | tig0026573:+19092 | Msa1429890:CDS |
| GGTGTTGAGGTCTCATCTTT+TGG | 0.367282 | tig0026573:+21114 | Msa1429890:CDS |
| TACTTGCCGGAGCTTCTTAC+GGG | 0.368030 | tig0026573:+20651 | Msa1429890:CDS |
| GGGGAGCTGGGACACTCCCC+TGG | 0.370301 | tig0026573:-20386 | None:intergenic |
| ATGCCAGAGCCAGCAGCTGC+AGG | 0.373077 | tig0026573:-19239 | None:intergenic |
| GGTTTAATTACAGGACTTGT+TGG | 0.379756 | tig0026573:+19056 | Msa1429890:CDS |
| CTTCTTACGGGCGTCTTATA+GGG | 0.383986 | tig0026573:+20663 | Msa1429890:CDS |
| GGAGGCAGATGTGGTCTGTT+TGG | 0.388393 | tig0026573:+19789 | Msa1429890:CDS |
| ATACTTGCCGGAGCTTCTTA+CGG | 0.390348 | tig0026573:+20650 | Msa1429890:CDS |
| GCAAAACCAGGTTTGGGAAG+AGG | 0.390549 | tig0026573:+21223 | Msa1429890:CDS |
| TCGTAATCAAGACTCTGAAT+AGG | 0.390749 | tig0026573:-16600 | None:intergenic |
| TTTCATGCACGACTATATCT+TGG | 0.398252 | tig0026573:+21568 | Msa1429890:CDS |
| ACTCTGAATAGGGCAAATAT+TGG | 0.400965 | tig0026573:-16589 | None:intergenic |
| TCCATTCACAGCTCTGGATA+CGG | 0.401365 | tig0026573:+20697 | Msa1429890:CDS |
| CACTCGAAGAAGCAGCTTCA+TGG | 0.403268 | tig0026573:+19676 | Msa1429890:CDS |
| TGAGAATGATCTATTGAAAC+AGG | 0.409569 | tig0026573:+18962 | Msa1429890:CDS |
| AAGCCTGCGGTTGGGGAGCT+GGG | 0.414364 | tig0026573:-20398 | None:intergenic |
| CTTATCCCTCTTCCCAAACC+TGG | 0.414445 | tig0026573:-21229 | None:intergenic |
| TCCAATATTCAAGATTATAC+TGG | 0.417742 | tig0026573:+20292 | Msa1429890:CDS |
| TACTGTTTCCACGAAGCTAT+AGG | 0.418181 | tig0026573:-21664 | None:intergenic |
| TCTTATGCAATTCTGTCATC+AGG | 0.419705 | tig0026573:+19764 | Msa1429890:CDS |
| TTGAGGTATGCTTTCACCTC+TGG | 0.425877 | tig0026573:-19263 | None:intergenic |
| AGGTCGGGTGTGGTGTAGGC+AGG | 0.427469 | tig0026573:-19852 | None:intergenic |
| CAGGTTTGGGAAGAGGGATA+AGG | 0.427720 | tig0026573:+21230 | Msa1429890:CDS |
| GCATGAAATCATGCCTTGTC+AGG | 0.431401 | tig0026573:-21553 | None:intergenic |
| CGTAATCAAGACTCTGAATA+GGG | 0.431994 | tig0026573:-16599 | None:intergenic |
| GCGAACAGAACACCACCAAC+GGG | 0.432693 | tig0026573:-19654 | None:intergenic |
| TGCAGAGGCCTCCAATTGTT+GGG | 0.432801 | tig0026573:+21528 | Msa1429890:intron |
| TACGGTGTTGCCATTCCCTC+TGG | 0.437284 | tig0026573:+20611 | Msa1429890:CDS |
| AGGTGGAACCATCGTTGAAT+AGG | 0.437290 | tig0026573:-20514 | None:intergenic |
| CAAAACCAGGTTTGGGAAGA+GGG | 0.444847 | tig0026573:+21224 | Msa1429890:CDS |
| AATATAACTGCGAGGAGGTC+GGG | 0.446107 | tig0026573:-19867 | None:intergenic |
| GTTTAATTACAGGACTTGTT+GGG | 0.448390 | tig0026573:+19057 | Msa1429890:CDS |
| AGCAGACAAGAGACGATAAT+CGG | 0.449779 | tig0026573:+16368 | Msa1429890:five_prime_UTR |
| GCCACTAAATTCCTCATGTA+TGG | 0.450639 | tig0026573:-20944 | None:intergenic |
| GTGCAGAGGCCTCCAATTGT+TGG | 0.453486 | tig0026573:+21527 | Msa1429890:intron |
| TCAAAGTGTGTGCCATGTCC+AGG | 0.453734 | tig0026573:+20368 | Msa1429890:CDS |
| AGGTTTGGGAAGAGGGATAA+GGG | 0.453961 | tig0026573:+21231 | Msa1429890:CDS |
| TCCACTTCAGAACAACATAT+TGG | 0.454549 | tig0026573:-19016 | None:intergenic |
| AGTTGATGAGCCTCCTTTGA+CGG | 0.454792 | tig0026573:+21069 | Msa1429890:CDS |
| CTACTTGCGGGGATTCAAGT+TGG | 0.455750 | tig0026573:-21600 | None:intergenic |
| TATGGAGAAGTATTTGTGAT+TGG | 0.458788 | tig0026573:-21307 | None:intergenic |
| TATTGAGAAGCCTGCGGTTG+GGG | 0.460000 | tig0026573:-20405 | None:intergenic |
| TGGAGTCATTGGAGGTCTCA+TGG | 0.460194 | tig0026573:+19893 | Msa1429890:CDS |
| TGATCAGATTGTGGAGTTGA+AGG | 0.461511 | tig0026573:+20892 | Msa1429890:CDS |
| GTATTGAGAAGCCTGCGGTT+GGG | 0.466094 | tig0026573:-20406 | None:intergenic |
| GATAAAGTCCTTCGCACTTA+CGG | 0.466861 | tig0026573:+19939 | Msa1429890:CDS |
| TTGCTTGAGCATGAGATTGT+TGG | 0.466888 | tig0026573:-19132 | None:intergenic |
| AATATCGACTCACCTGGAAA+TGG | 0.467418 | tig0026573:+19547 | Msa1429890:CDS |
| TTCATGCACGACTATATCTT+GGG | 0.468911 | tig0026573:+21569 | Msa1429890:CDS |
| TTTATTCATGTGGCTACTTG+CGG | 0.470591 | tig0026573:-21613 | None:intergenic |
| TACTATTGTGAACAAGGTTA+AGG | 0.471521 | tig0026573:+21189 | Msa1429890:CDS |
| GTTGGGTTCTTTAATAACCT+TGG | 0.479221 | tig0026573:+19074 | Msa1429890:CDS |
| CTGAGATCATTGTAGTGGTT+TGG | 0.481255 | tig0026573:-20452 | None:intergenic |
| ACCAATATGTTGTTCTGAAG+TGG | 0.487564 | tig0026573:+19015 | Msa1429890:CDS |
| TTTGTGGCGATATACTTGCT+TGG | 0.487857 | tig0026573:+20578 | Msa1429890:CDS |
| ATTACGTGCGGTGCAGCTGC+TGG | 0.488782 | tig0026573:+19609 | Msa1429890:CDS |
| TATCGACAAGATAATTGTAA+AGG | 0.489181 | tig0026573:-19920 | None:intergenic |
| CTTGTCAGGATCCCAACAAT+TGG | 0.493087 | tig0026573:-21539 | None:intergenic |
| AGAAGCTCCGGCAAGTATGA+CGG | 0.495770 | tig0026573:-20645 | None:intergenic |
| GAGACTTGATAGCTGAAATC+CGG | 0.497443 | tig0026573:-20546 | None:intergenic |
| GAGGAGGTCGGGTGTGGTGT+AGG | 0.498450 | tig0026573:-19856 | None:intergenic |
| CCATTCACAGCTCTGGATAC+GGG | 0.500003 | tig0026573:+20698 | Msa1429890:CDS |
| CATCAGATCCTATAGCTTCG+TGG | 0.500885 | tig0026573:+21656 | Msa1429890:three_prime_UTR |
| AAAGGAGGCTCATCAACTAC+TGG | 0.501049 | tig0026573:-21064 | None:intergenic |
| GGAGCCGCATCTTTCCTTGG+TGG | 0.504489 | tig0026573:+20737 | Msa1429890:CDS |
| GATGGCTCCATTCACAGCTC+TGG | 0.504776 | tig0026573:+20691 | Msa1429890:CDS |
| ATATTTCTTGGAGTCATTGG+AGG | 0.505188 | tig0026573:+19885 | Msa1429890:CDS |
| GGACATTTCACAAGAGGAGA+TGG | 0.507391 | tig0026573:+21264 | Msa1429890:CDS |
| GAAAGGATTGATTAATGCCA+TGG | 0.508627 | tig0026573:+16449 | Msa1429890:exon |
| GAAGCTCCGGCAAGTATGAC+GGG | 0.509879 | tig0026573:-20644 | None:intergenic |
| TACATGAGGAATTTAGTGGC+AGG | 0.511292 | tig0026573:+20947 | Msa1429890:CDS |
| CTGGGACACTCCCCTGGACA+TGG | 0.514759 | tig0026573:-20380 | None:intergenic |
| AACTGCGAGGAGGTCGGGTG+TGG | 0.515931 | tig0026573:-19862 | None:intergenic |
| GTTGCGGATGGCATCGTCGT+TGG | 0.517368 | tig0026573:-20492 | None:intergenic |
| TGCGAACAGAACACCACCAA+CGG | 0.518245 | tig0026573:-19655 | None:intergenic |
| TAACTTGTTGATGCTACCAT+TGG | 0.520536 | tig0026573:+20811 | Msa1429890:CDS |
| TGGAAGCCCAAATCGAATAC+AGG | 0.520741 | tig0026573:-20339 | None:intergenic |
| GCAAATATTGGCTCCAACGA+TGG | 0.520937 | tig0026573:-16577 | None:intergenic |
| CAACACCAACCCGCACAACT+CGG | 0.524524 | tig0026573:-21098 | None:intergenic |
| AATGAAGAGTCCAGAGGGAA+TGG | 0.524646 | tig0026573:-20621 | None:intergenic |
| AACACCAACCCGCACAACTC+GGG | 0.524685 | tig0026573:-21097 | None:intergenic |
| AAATATAACTGCGAGGAGGT+CGG | 0.525416 | tig0026573:-19868 | None:intergenic |
| TGTCCCAGCTCCCCAACCGC+AGG | 0.526466 | tig0026573:+20395 | Msa1429890:CDS |
| CCCGTATCCAGAGCTGTGAA+TGG | 0.526772 | tig0026573:-20698 | None:intergenic |
| CGGATGCTCCCGAGTTGTGC+GGG | 0.526808 | tig0026573:+21089 | Msa1429890:CDS |
| TCTTCTCAACTCGCCATCGT+TGG | 0.526966 | tig0026573:+16564 | Msa1429890:CDS |
| GCTTGCATTGCTAATTTACT+CGG | 0.527957 | tig0026573:+19507 | Msa1429890:CDS |
| TTTGGGAAGAGGGATAAGGG+TGG | 0.528215 | tig0026573:+21234 | Msa1429890:CDS |
| ACTAGGGAGAGGGTGATGAC+AGG | 0.529305 | tig0026573:+21163 | Msa1429890:CDS |
| GGGAAGAGGGATAAGGGTGG+AGG | 0.531741 | tig0026573:+21237 | Msa1429890:CDS |
| AGATCATTGTAGTGGTTTGG+TGG | 0.533472 | tig0026573:-20449 | None:intergenic |
| TATTCATGTGGCTACTTGCG+GGG | 0.534257 | tig0026573:-21611 | None:intergenic |
| GCCATACATGAGGAATTTAG+TGG | 0.536201 | tig0026573:+20943 | Msa1429890:CDS |
| TACGATCATCGATCAAAGAA+AGG | 0.537082 | tig0026573:+16432 | Msa1429890:five_prime_UTR |
| GGCACACACTTTGATAGCAA+TGG | 0.537690 | tig0026573:-20359 | None:intergenic |
| GATCAGATTGTGGAGTTGAA+GGG | 0.538314 | tig0026573:+20893 | Msa1429890:CDS |
| GTCAGGATCCCAACAATTGG+AGG | 0.542092 | tig0026573:-21536 | None:intergenic |
| CCTTGACAAAGAGGGTAGAT+GGG | 0.543090 | tig0026573:-19313 | None:intergenic |
| AAGAAGCAGCTTCATGGTGG+AGG | 0.544267 | tig0026573:+19682 | Msa1429890:CDS |
| AGTTGTGCGGGTTGGTGTTG+AGG | 0.544920 | tig0026573:+21101 | Msa1429890:CDS |
| ATGATCTATTGAAACAGGAC+TGG | 0.545905 | tig0026573:+18967 | Msa1429890:CDS |
| CTAGTTGTGCCTAAGAAACC+AGG | 0.546145 | tig0026573:+21400 | Msa1429890:CDS |
| CATGAGGAATTTAGTGGCAG+GGG | 0.546458 | tig0026573:+20949 | Msa1429890:CDS |
| GAAGGACCCATGGTTCATAC+AGG | 0.549790 | tig0026573:+19483 | Msa1429890:CDS |
| ACGGATGCTCCCGAGTTGTG+CGG | 0.550426 | tig0026573:+21088 | Msa1429890:CDS |
| AACTCGGGAGCATCCGTCAA+AGG | 0.551479 | tig0026573:-21082 | None:intergenic |
| GGAGTCATTGGAGGTCTCAT+GGG | 0.552861 | tig0026573:+19894 | Msa1429890:CDS |
| TGTGAACAAGGTTAAGGCAA+GGG | 0.554225 | tig0026573:+21195 | Msa1429890:CDS |
| AAATCCGGCGTTAGCAGAGG+TGG | 0.554279 | tig0026573:-20531 | None:intergenic |
| AACCATCGTTGAATAGGTTG+CGG | 0.554720 | tig0026573:-20508 | None:intergenic |
| CGCGTAAATATCGACTCACC+TGG | 0.554841 | tig0026573:+19541 | Msa1429890:CDS |
| AGCACAAGACATTGTTCACT+AGG | 0.556246 | tig0026573:+21146 | Msa1429890:CDS |
| GATGTGGTCTGTTTGGAGAA+GGG | 0.556580 | tig0026573:+19796 | Msa1429890:CDS |
| ATGTGGTCTGTTTGGAGAAG+GGG | 0.556647 | tig0026573:+19797 | Msa1429890:CDS |
| CCCATCTACCCTCTTTGTCA+AGG | 0.557767 | tig0026573:+19313 | Msa1429890:CDS |
| TGTATTGAGAAGCCTGCGGT+TGG | 0.559502 | tig0026573:-20407 | None:intergenic |
| AAGACGCCCGTAAGAAGCTC+CGG | 0.562668 | tig0026573:-20657 | None:intergenic |
| CAAAGTGTGTGCCATGTCCA+GGG | 0.563335 | tig0026573:+20369 | Msa1429890:CDS |
| GATGCTACCATTGGTCATGT+TGG | 0.563949 | tig0026573:+20820 | Msa1429890:CDS |
| GGATTTGGACATTTCACAAG+AGG | 0.564011 | tig0026573:+21258 | Msa1429890:CDS |
| CATCAGGGAGGAGGCAGATG+TGG | 0.564378 | tig0026573:+19780 | Msa1429890:CDS |
| AGATGTGGTCTGTTTGGAGA+AGG | 0.565982 | tig0026573:+19795 | Msa1429890:CDS |
| TCTCCTCGTTTCTAAGACAG+TGG | 0.567789 | tig0026573:+20844 | Msa1429890:CDS |
| CAAGGAAAGATGCGGCTCCA+AGG | 0.568106 | tig0026573:-20733 | None:intergenic |
| TGCTCCCGAGTTGTGCGGGT+TGG | 0.569910 | tig0026573:+21093 | Msa1429890:CDS |
| ATATATAGTCTTTATTCATG+TGG | 0.571536 | tig0026573:-21623 | None:intergenic |
| CTAGGGAGAGGGTGATGACA+GGG | 0.574990 | tig0026573:+21164 | Msa1429890:CDS |
| TTAAACCAATAAGAAGTGCA+AGG | 0.576883 | tig0026573:-19040 | None:intergenic |
| ATTCTGCTTCTGAGAAGTAA+CGG | 0.580228 | tig0026573:-16534 | None:intergenic |
| CAATTCTGTCATCAGGGAGG+AGG | 0.583424 | tig0026573:+19771 | Msa1429890:CDS |
| GATTAATGCCATGGACATGA+TGG | 0.584376 | tig0026573:+16458 | Msa1429890:exon |
| TAGTGACTCCATCATGTCCA+TGG | 0.590022 | tig0026573:-16466 | None:intergenic |
| ATCGTTGAATAGGTTGCGGA+TGG | 0.590388 | tig0026573:-20504 | None:intergenic |
| ACATGAGGAATTTAGTGGCA+GGG | 0.591059 | tig0026573:+20948 | Msa1429890:CDS |
| TTGTGAACAAGGTTAAGGCA+AGG | 0.592086 | tig0026573:+21194 | Msa1429890:CDS |
| TAAACCAATAAGAAGTGCAA+GGG | 0.592950 | tig0026573:-19039 | None:intergenic |
| TAGAGAAACTGTCATTCTCA+TGG | 0.593783 | tig0026573:-20762 | None:intergenic |
| AGGTGTTTATGATCAGATTG+TGG | 0.595548 | tig0026573:+20883 | Msa1429890:CDS |
| CAAGCACCTGTATGAACCAT+GGG | 0.595972 | tig0026573:-19489 | None:intergenic |
| CAATTGTTGGGATCCTGACA+AGG | 0.596275 | tig0026573:+21540 | Msa1429890:CDS |
| GCAAGCACCTGTATGAACCA+TGG | 0.596508 | tig0026573:-19490 | None:intergenic |
| ATCTATTGAAACAGGACTGG+AGG | 0.598594 | tig0026573:+18970 | Msa1429890:CDS |
| ATTAGAAGTGACAGAACGGA+GGG | 0.598601 | tig0026573:+16295 | None:intergenic |
| ACTTGCGGGGATTCAAGTTG+GGG | 0.599332 | tig0026573:-21598 | None:intergenic |
| CAGCAATATTCTCAACTCCA+AGG | 0.606942 | tig0026573:-19091 | None:intergenic |
| AATTACGTACCTTGACAAAG+AGG | 0.607782 | tig0026573:-19322 | None:intergenic |
| CTGAAATCCGGCGTTAGCAG+AGG | 0.610351 | tig0026573:-20534 | None:intergenic |
| GAGAGCTGAGATCATTGTAG+TGG | 0.610606 | tig0026573:-20457 | None:intergenic |
| ACGGGAATGAAGAGTCCAGA+GGG | 0.612848 | tig0026573:-20626 | None:intergenic |
| CAGGAGCAATGTAAGCACAC+AGG | 0.614796 | tig0026573:-19220 | None:intergenic |
| GACATTGTTCACTAGGGAGA+GGG | 0.615845 | tig0026573:+21153 | Msa1429890:CDS |
| AACAACTGCTACTACTGCAG+TGG | 0.616642 | tig0026573:-19733 | None:intergenic |
| TGTGGGGAAAGAAGGACCCA+TGG | 0.617260 | tig0026573:+19473 | Msa1429890:CDS |
| TTGCTTGGAATTGTGACATA+CGG | 0.617835 | tig0026573:+20593 | Msa1429890:CDS |
| GAGGCATTTGCAGTGTACGT+TGG | 0.618257 | tig0026573:+19164 | Msa1429890:CDS |
| AGACATTGTTCACTAGGGAG+AGG | 0.620397 | tig0026573:+21152 | Msa1429890:CDS |
| CTTATGCAATTCTGTCATCA+GGG | 0.620544 | tig0026573:+19765 | Msa1429890:CDS |
| ATTGCTAATTTACTCGGACA+AGG | 0.621738 | tig0026573:+19513 | Msa1429890:CDS |
| TTATAGCGCCGTAAGTGCGA+AGG | 0.622975 | tig0026573:-19947 | None:intergenic |
| AGGAGCAATGTAAGCACACA+GGG | 0.624127 | tig0026573:-19219 | None:intergenic |
| GGTGGAGGAGTGCTCTTCTG+TGG | 0.624513 | tig0026573:+19697 | Msa1429890:CDS |
| AACGATGGCGAGTTGAGAAG+AGG | 0.626560 | tig0026573:-16562 | None:intergenic |
| TCATTCTCATGGTGCCACCA+AGG | 0.628418 | tig0026573:-20751 | None:intergenic |
| TGCTGGCTCTGGCATACCAG+AGG | 0.630169 | tig0026573:+19247 | Msa1429890:CDS |
| AGGGTCTACTATTGTGAACA+AGG | 0.630406 | tig0026573:+21183 | Msa1429890:CDS |
| TGTGGTCTGTTTGGAGAAGG+GGG | 0.633017 | tig0026573:+19798 | Msa1429890:CDS |
| GATTAGAAGTGACAGAACGG+AGG | 0.633144 | tig0026573:+16294 | None:intergenic |
| AGGAGGGATTTGATTACGTG+CGG | 0.636837 | tig0026573:+19597 | Msa1429890:CDS |
| TGGAGTCACTAACAGAGGAA+AGG | 0.639982 | tig0026573:+16478 | Msa1429890:CDS |
| TCGGGAGCATCCGTCAAAGG+AGG | 0.647188 | tig0026573:-21079 | None:intergenic |
| GCACAAGACATTGTTCACTA+GGG | 0.647788 | tig0026573:+21147 | Msa1429890:CDS |
| ATTACGTACCTTGACAAAGA+GGG | 0.651505 | tig0026573:-19321 | None:intergenic |
| AGGAGAACCAACATGACCAA+TGG | 0.653549 | tig0026573:-20827 | None:intergenic |
| GAGGTGAAAGCATACCTCAA+CGG | 0.653916 | tig0026573:+19266 | Msa1429890:CDS |
| CTTGACAAAGAGGGTAGATG+GGG | 0.654562 | tig0026573:-19312 | None:intergenic |
| GGACTGGAGGTCAAGAACAA+AGG | 0.657057 | tig0026573:+18983 | Msa1429890:CDS |
| GCGTCTTATAGGGACTGTGA+TGG | 0.661114 | tig0026573:+20673 | Msa1429890:CDS |
| AAGGATTAGAAGTGACAGAA+CGG | 0.663020 | tig0026573:+16291 | None:intergenic |
| CAGCCACTGTCTTAGAAACG+AGG | 0.666093 | tig0026573:-20847 | None:intergenic |
| GGTTCCACCTCTGCTAACGC+CGG | 0.666107 | tig0026573:+20527 | Msa1429890:CDS |
| TCGAAGAAGCAGCTTCATGG+TGG | 0.672233 | tig0026573:+19679 | Msa1429890:CDS |
| GAACAGAACACCACCAACGG+GGG | 0.675854 | tig0026573:-19652 | None:intergenic |
| GCTAATTTACTCGGACAAGG+TGG | 0.678870 | tig0026573:+19516 | Msa1429890:CDS |
| GGTGCCACCAAGGAAAGATG+CGG | 0.680001 | tig0026573:-20741 | None:intergenic |
| ATCCGCAACCTATTCAACGA+TGG | 0.680395 | tig0026573:+20506 | Msa1429890:CDS |
| AAAGTGTGTGCCATGTCCAG+GGG | 0.681077 | tig0026573:+20370 | Msa1429890:CDS |
| CATGATGGAGTCACTAACAG+AGG | 0.687175 | tig0026573:+16473 | Msa1429890:CDS |
| TTGAAAGTGACAGAACATCA+CGG | 0.692777 | tig0026573:+21037 | Msa1429890:CDS |
| CGAACAGAACACCACCAACG+GGG | 0.696103 | tig0026573:-19653 | None:intergenic |
| GACGGGAATGAAGAGTCCAG+AGG | 0.696782 | tig0026573:-20627 | None:intergenic |
| CTCCAAGAAATATAACTGCG+AGG | 0.697199 | tig0026573:-19875 | None:intergenic |
| AAGCCCAAATCGAATACAGG+AGG | 0.700188 | tig0026573:-20336 | None:intergenic |
| CACATGCAGAGCCATACATG+AGG | 0.706727 | tig0026573:+20933 | Msa1429890:CDS |
| AATGTGCATCAATGCCGTTG+AGG | 0.707928 | tig0026573:-19280 | None:intergenic |
| GCTCAAGCAAAAGTATCACG+AGG | 0.735323 | tig0026573:+19145 | Msa1429890:CDS |
| CAAGAAATATAACTGCGAGG+AGG | 0.742689 | tig0026573:-19872 | None:intergenic |
| ATGCAATTCTGTCATCAGGG+AGG | 0.743594 | tig0026573:+19768 | Msa1429890:CDS |
| GTAGTGTATTGAGAAGCCTG+CGG | 0.784310 | tig0026573:-20411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTAAATTATATTTTAA+AGG | + | tig0026573:17522-17541 | Msa1429890:intron | 0.0% |
| !!! | TATTTAAATTATATTTTAAA+GGG | + | tig0026573:17523-17542 | Msa1429890:intron | 0.0% |
| !! | TATATATATATATATATATA+AGG | - | tig0026573:19983-20002 | None:intergenic | 0.0% |
| !!! | GGATTTTTTTTTAATTAATA+CGG | - | tig0026573:16764-16783 | None:intergenic | 10.0% |
| !!! | TAAAAAAAAATCCTAAATTT+TGG | + | tig0026573:16771-16790 | Msa1429890:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTTGT+AGG | + | tig0026573:18006-18025 | Msa1429890:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTTGTA+GGG | + | tig0026573:18007-18026 | Msa1429890:intron | 10.0% |
| !!! | AAAATTCATCTTTTAAAATA+GGG | - | tig0026573:18110-18129 | None:intergenic | 10.0% |
| !!! | AAAAATTCATCTTTTAAAAT+AGG | - | tig0026573:18111-18130 | None:intergenic | 10.0% |
| !!! | AATCTTATAAATATTTTCTA+AGG | - | tig0026573:18399-18418 | None:intergenic | 10.0% |
| !! | GTATCGTATAATAATAATAA+TGG | - | tig0026573:16415-16434 | None:intergenic | 15.0% |
| !!! | ATTTTTGCTTAAATTCTTTT+CGG | + | tig0026573:16735-16754 | Msa1429890:intron | 15.0% |
| !!! | TTTTGTTCATGTTTTTTTTT+TGG | + | tig0026573:17172-17191 | Msa1429890:intron | 15.0% |
| !!! | TTTTTAATCCCTATAAAATT+GGG | + | tig0026573:17555-17574 | Msa1429890:intron | 15.0% |
| !! | AAGTAAATACTAAACTTAAA+AGG | - | tig0026573:17582-17601 | None:intergenic | 15.0% |
| !!! | TCAAAATTTTAAGAGTTTTA+AGG | + | tig0026573:17946-17965 | Msa1429890:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | tig0026573:18036-18055 | Msa1429890:intron | 15.0% |
| !! | TATAATTGATTAGTATTTGA+AGG | + | tig0026573:18516-18535 | Msa1429890:intron | 15.0% |
| !! | ATAATTGATTAGTATTTGAA+GGG | + | tig0026573:18517-18536 | Msa1429890:intron | 15.0% |
| !! | AATTAAAAATAGTGTAACAA+TGG | + | tig0026573:18748-18767 | Msa1429890:intron | 15.0% |
| !! | GTTTATTTAATTGTGATTAT+TGG | + | tig0026573:18819-18838 | Msa1429890:intron | 15.0% |
| !!! | ATTAAGCTATATGTTAATTT+TGG | + | tig0026573:18916-18935 | Msa1429890:intron | 15.0% |
| !! | ATTAGTTAACTACTATTTAT+TGG | - | tig0026573:19396-19415 | None:intergenic | 15.0% |
| !! | AATAAATAGTAGTTAACTAA+TGG | + | tig0026573:19395-19414 | Msa1429890:intron | 15.0% |
| !! | ATCAAAATAGATTAACACAA+AGG | - | tig0026573:16801-16820 | None:intergenic | 20.0% |
| !!! | TGTGTTAATCTATTTTGATT+TGG | + | tig0026573:16802-16821 | Msa1429890:intron | 20.0% |
| !!! | ACTTAATTTGTGAAATTGTT+TGG | + | tig0026573:17016-17035 | Msa1429890:intron | 20.0% |
| !!! | GTTTTTTTTTTGGTTATAAC+TGG | + | tig0026573:17182-17201 | Msa1429890:intron | 20.0% |
| !!! | GTTTTTAATCCCTATAAAAT+TGG | + | tig0026573:17554-17573 | Msa1429890:intron | 20.0% |
| !! | AAACAGATTTGAATTGATTA+GGG | - | tig0026573:17656-17675 | None:intergenic | 20.0% |
| !! | TAAACAGATTTGAATTGATT+AGG | - | tig0026573:17657-17676 | None:intergenic | 20.0% |
| !! | AGATAAAAAGTAACAAAATC+TGG | - | tig0026573:17814-17833 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTCCTATAAAATT+GGG | - | tig0026573:18078-18097 | None:intergenic | 20.0% |
| !!! | AATAGGGTTAAATATGTTTT+TGG | - | tig0026573:18094-18113 | None:intergenic | 20.0% |
| !!! | TCTTTACTATCTTAACTTTT+TGG | - | tig0026573:18288-18307 | None:intergenic | 20.0% |
| !! | ACTCTTAAATGAATCAATTT+CGG | - | tig0026573:18455-18474 | None:intergenic | 20.0% |
| !!! | GCGTTTTCTAAAAAAAAAAT+GGG | + | tig0026573:18714-18733 | Msa1429890:intron | 20.0% |
| !!! | TTTTCTAAAAAAAAAATGGG+AGG | + | tig0026573:18717-18736 | Msa1429890:intron | 20.0% |
| !!! | TTTCTAAAAAAAAAATGGGA+GGG | + | tig0026573:18718-18737 | Msa1429890:intron | 20.0% |
| !!! | TAAATAAACACTTTGAAAGT+TGG | - | tig0026573:18808-18827 | None:intergenic | 20.0% |
| !!! | ATCTTTTACAATTACTAATC+TGG | + | tig0026573:20042-20061 | Msa1429890:intron | 20.0% |
| !! | TAATAACTTAATTGAATTGC+AGG | + | tig0026573:20264-20283 | Msa1429890:intron | 20.0% |
| !!! | TCTTTTGCAATATTTATTTG+TGG | + | tig0026573:21434-21453 | Msa1429890:intron | 20.0% |
| !! | ATATATAGTCTTTATTCATG+TGG | - | tig0026573:21626-21645 | None:intergenic | 20.0% |
| !!! | CCACGTTAAAATTTGATTTT+GGG | - | tig0026573:16888-16907 | None:intergenic | 25.0% |
| !!! | CCAAAATCAAATTTTAACGT+GGG | + | tig0026573:16886-16905 | Msa1429890:intron | 25.0% |
| ! | AAGTTAACAACTTTGCTTAA+GGG | - | tig0026573:17000-17019 | None:intergenic | 25.0% |
| ! | TAAGTTAACAACTTTGCTTA+AGG | - | tig0026573:17001-17020 | None:intergenic | 25.0% |
| ! | TAAAACTTAGTTTACTCGAT+TGG | + | tig0026573:17077-17096 | Msa1429890:intron | 25.0% |
| !!! | ATATTTGATTTGATATGCTG+TGG | + | tig0026573:17316-17335 | Msa1429890:intron | 25.0% |
| ! | TACATATAAAAGATGTAACG+CGG | - | tig0026573:17355-17374 | None:intergenic | 25.0% |
| !! | TAAAAGGTCCCAATTTTATA+GGG | - | tig0026573:17566-17585 | None:intergenic | 25.0% |
| !! | TTAAAAGGTCCCAATTTTAT+AGG | - | tig0026573:17567-17586 | None:intergenic | 25.0% |
| ! | AGTGCAGGAAAAAAAAATTA+GGG | - | tig0026573:17623-17642 | None:intergenic | 25.0% |
| !! | AATTTTGCGATAATTTTGTG+CGG | - | tig0026573:17750-17769 | None:intergenic | 25.0% |
| !!! | TAAACAAACTTTGTTTTAGC+AGG | + | tig0026573:17974-17993 | Msa1429890:intron | 25.0% |
| !!! | AAACAAACTTTGTTTTAGCA+GGG | + | tig0026573:17975-17994 | Msa1429890:intron | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | + | tig0026573:18066-18085 | Msa1429890:intron | 25.0% |
| !!! | GTTTTTGGTTCCTATAAAAT+TGG | - | tig0026573:18079-18098 | None:intergenic | 25.0% |
| !! | GTTCTAATTAACATTTTCGA+AGG | - | tig0026573:18264-18283 | None:intergenic | 25.0% |
| ! | AGTAGAACATTAAAGTGATA+TGG | + | tig0026573:18472-18491 | Msa1429890:intron | 25.0% |
| !!! | CGCGTTTTCTAAAAAAAAAA+TGG | + | tig0026573:18713-18732 | Msa1429890:intron | 25.0% |
| !!! | TTATTTTGTACATAGCTTCA+AGG | + | tig0026573:18779-18798 | Msa1429890:intron | 25.0% |
| !! | AAGCTATATGTTAATTTTGG+TGG | + | tig0026573:18919-18938 | Msa1429890:intron | 25.0% |
| !!! | CTTCTTATTGGTTTAATTAC+AGG | + | tig0026573:19047-19066 | Msa1429890:CDS | 25.0% |
| !! | TTGGTTGTAACATGATTTTA+GGG | + | tig0026573:19183-19202 | Msa1429890:CDS | 25.0% |
| !!! | CTGTTTTTGATTTGAATACA+TGG | + | tig0026573:19365-19384 | Msa1429890:intron | 25.0% |
| ! | ACTTCAAAAATGATAGAGAT+AGG | + | tig0026573:19577-19596 | Msa1429890:CDS | 25.0% |
| ! | TATCGACAAGATAATTGTAA+AGG | - | tig0026573:19923-19942 | None:intergenic | 25.0% |
| ! | GTACAAATTGCTATAAATAG+TGG | + | tig0026573:20133-20152 | Msa1429890:intron | 25.0% |
| ! | ATTGTTTCAACAACAGTATA+TGG | - | tig0026573:21328-21347 | None:intergenic | 25.0% |
| ACAAAGGTTTGCCAAAATTT+AGG | - | tig0026573:16785-16804 | None:intergenic | 30.0% | |
| !! | CCCAAAATCAAATTTTAACG+TGG | + | tig0026573:16885-16904 | Msa1429890:intron | 30.0% |
| !! | CCCACGTTAAAATTTGATTT+TGG | - | tig0026573:16889-16908 | None:intergenic | 30.0% |
| GCAGCAATTTAAATTGAAAC+AGG | - | tig0026573:16948-16967 | None:intergenic | 30.0% | |
| ! | AGAGATCTTTTATATGCACT+TGG | + | tig0026573:17390-17409 | Msa1429890:intron | 30.0% |
| CAGTGCAGGAAAAAAAAATT+AGG | - | tig0026573:17624-17643 | None:intergenic | 30.0% | |
| AAATTGGGAACTTCTAAGTT+TGG | - | tig0026573:18063-18082 | None:intergenic | 30.0% | |
| TTGTCTGAGTATGATATGTA+GGG | - | tig0026573:18583-18602 | None:intergenic | 30.0% | |
| ! | TAATCTCTACTAAGGTGTTT+AGG | - | tig0026573:18627-18646 | None:intergenic | 30.0% |
| !! | ATATGTTAATTTTGGTGGCA+TGG | + | tig0026573:18924-18943 | Msa1429890:intron | 30.0% |
| TGAGAATGATCTATTGAAAC+AGG | + | tig0026573:18962-18981 | Msa1429890:CDS | 30.0% | |
| ! | TAAACCAATAAGAAGTGCAA+GGG | - | tig0026573:19042-19061 | None:intergenic | 30.0% |
| ! | TTAAACCAATAAGAAGTGCA+AGG | - | tig0026573:19043-19062 | None:intergenic | 30.0% |
| ! | GTTTAATTACAGGACTTGTT+GGG | + | tig0026573:19057-19076 | Msa1429890:CDS | 30.0% |
| ! | GTTGGTTGTAACATGATTTT+AGG | + | tig0026573:19182-19201 | Msa1429890:CDS | 30.0% |
| ! | TGGTTGTAACATGATTTTAG+GGG | + | tig0026573:19184-19203 | Msa1429890:CDS | 30.0% |
| CATTGATGCACATTCTATAT+TGG | + | tig0026573:19289-19308 | Msa1429890:CDS | 30.0% | |
| !! | CAGATATTTGGTTCGATTTT+AGG | + | tig0026573:19432-19451 | Msa1429890:intron | 30.0% |
| TCAAAAATGATAGAGATAGG+AGG | + | tig0026573:19580-19599 | Msa1429890:CDS | 30.0% | |
| CAAAAATGATAGAGATAGGA+GGG | + | tig0026573:19581-19600 | Msa1429890:CDS | 30.0% | |
| GTTATATTTCTTGGAGTCAT+TGG | + | tig0026573:19882-19901 | Msa1429890:CDS | 30.0% | |
| !! | AAGTCTCTTAGTTTTCTTTG+TGG | + | tig0026573:20562-20581 | Msa1429890:CDS | 30.0% |
| ! | TTTTTGTGGGATAGAAAAAG+TGG | + | tig0026573:20997-21016 | Msa1429890:CDS | 30.0% |
| ! | TTTTGTGGGATAGAAAAAGT+GGG | + | tig0026573:20998-21017 | Msa1429890:CDS | 30.0% |
| TACTATTGTGAACAAGGTTA+AGG | + | tig0026573:21189-21208 | Msa1429890:CDS | 30.0% | |
| !! | TATGGAGAAGTATTTGTGAT+TGG | - | tig0026573:21310-21329 | None:intergenic | 30.0% |
| AAATGTTAAACATTGTGCAG+AGG | + | tig0026573:21513-21532 | Msa1429890:intron | 30.0% | |
| TACGATCATCGATCAAAGAA+AGG | + | tig0026573:16432-16451 | Msa1429890:five_prime_UTR | 35.0% | |
| GAAAGGATTGATTAATGCCA+TGG | + | tig0026573:16449-16468 | Msa1429890:exon | 35.0% | |
| ! | ATTCTGCTTCTGAGAAGTAA+CGG | - | tig0026573:16537-16556 | None:intergenic | 35.0% |
| ACTCTGAATAGGGCAAATAT+TGG | - | tig0026573:16592-16611 | None:intergenic | 35.0% | |
| CGTAATCAAGACTCTGAATA+GGG | - | tig0026573:16602-16621 | None:intergenic | 35.0% | |
| TCGTAATCAAGACTCTGAAT+AGG | - | tig0026573:16603-16622 | None:intergenic | 35.0% | |
| ! | CAAGTTTAGAACACTATGAG+AGG | - | tig0026573:17911-17930 | None:intergenic | 35.0% |
| !! | TCAATTTCGGTGGACTAATT+TGG | + | tig0026573:18355-18374 | Msa1429890:intron | 35.0% |
| CTTGTCTGAGTATGATATGT+AGG | - | tig0026573:18584-18603 | None:intergenic | 35.0% | |
| CGTTAGACTAATCTCTACTA+AGG | - | tig0026573:18635-18654 | None:intergenic | 35.0% | |
| AACGCGATAGTTAGAGAATT+TGG | - | tig0026573:18699-18718 | None:intergenic | 35.0% | |
| ATGATCTATTGAAACAGGAC+TGG | + | tig0026573:18967-18986 | Msa1429890:CDS | 35.0% | |
| !! | ACCAATATGTTGTTCTGAAG+TGG | + | tig0026573:19015-19034 | Msa1429890:CDS | 35.0% |
| TCCACTTCAGAACAACATAT+TGG | - | tig0026573:19019-19038 | None:intergenic | 35.0% | |
| GGTTTAATTACAGGACTTGT+TGG | + | tig0026573:19056-19075 | Msa1429890:CDS | 35.0% | |
| GTTGGGTTCTTTAATAACCT+TGG | + | tig0026573:19074-19093 | Msa1429890:CDS | 35.0% | |
| !! | TGTAACATGATTTTAGGGGT+TGG | + | tig0026573:19188-19207 | Msa1429890:CDS | 35.0% |
| ATTACGTACCTTGACAAAGA+GGG | - | tig0026573:19324-19343 | None:intergenic | 35.0% | |
| AATTACGTACCTTGACAAAG+AGG | - | tig0026573:19325-19344 | None:intergenic | 35.0% | |
| AGTTAACTAATGGCTTGAAG+TGG | + | tig0026573:19405-19424 | Msa1429890:intron | 35.0% | |
| GCTTGCATTGCTAATTTACT+CGG | + | tig0026573:19507-19526 | Msa1429890:CDS | 35.0% | |
| ATTGCTAATTTACTCGGACA+AGG | + | tig0026573:19513-19532 | Msa1429890:CDS | 35.0% | |
| TCTTATGCAATTCTGTCATC+AGG | + | tig0026573:19764-19783 | Msa1429890:CDS | 35.0% | |
| CTTATGCAATTCTGTCATCA+GGG | + | tig0026573:19765-19784 | Msa1429890:CDS | 35.0% | |
| ATATTTCTTGGAGTCATTGG+AGG | + | tig0026573:19885-19904 | Msa1429890:CDS | 35.0% | |
| AATTAAGAGCTATAGTGCTG+CGG | + | tig0026573:20066-20085 | Msa1429890:intron | 35.0% | |
| ATAGCATATCACAGAACAGT+AGG | - | tig0026573:20106-20125 | None:intergenic | 35.0% | |
| GCTATAATACTATTGCTGCA+TGG | + | tig0026573:20166-20185 | Msa1429890:intron | 35.0% | |
| CTATTGCTGCATGGTAAAAT+TGG | + | tig0026573:20175-20194 | Msa1429890:intron | 35.0% | |
| !!! | GCAATTGACAACACTGATTT+TGG | + | tig0026573:20223-20242 | Msa1429890:intron | 35.0% |
| ACTTAATTGAATTGCAGGAG+AGG | + | tig0026573:20269-20288 | Msa1429890:intron | 35.0% | |
| TAACCTCCTGTATTCGATTT+GGG | + | tig0026573:20333-20352 | Msa1429890:CDS | 35.0% | |
| TTGCTTGGAATTGTGACATA+CGG | + | tig0026573:20593-20612 | Msa1429890:CDS | 35.0% | |
| TAGAGAAACTGTCATTCTCA+TGG | - | tig0026573:20765-20784 | None:intergenic | 35.0% | |
| !! | TAACTTGTTGATGCTACCAT+TGG | + | tig0026573:20811-20830 | Msa1429890:CDS | 35.0% |
| !!! | GTGGCTGATTGTTTTAACAA+AGG | + | tig0026573:20863-20882 | Msa1429890:CDS | 35.0% |
| AGGTGTTTATGATCAGATTG+TGG | + | tig0026573:20883-20902 | Msa1429890:CDS | 35.0% | |
| ! | GTCCACTGTTTTCTTTTTGT+GGG | + | tig0026573:20984-21003 | Msa1429890:CDS | 35.0% |
| ATCCCACAAAAAGAAAACAG+TGG | - | tig0026573:20989-21008 | None:intergenic | 35.0% | |
| TTTGTGGGATAGAAAAAGTG+GGG | + | tig0026573:20999-21018 | Msa1429890:CDS | 35.0% | |
| TTGAAAGTGACAGAACATCA+CGG | + | tig0026573:21037-21056 | Msa1429890:CDS | 35.0% | |
| ! | GATTTTGCAAAACCAGGTTT+GGG | + | tig0026573:21217-21236 | Msa1429890:CDS | 35.0% |
| TTACTTACTCCTGGTTTCTT+AGG | - | tig0026573:21412-21431 | None:intergenic | 35.0% | |
| CAAAAGAGATTACTTACTCC+TGG | - | tig0026573:21421-21440 | None:intergenic | 35.0% | |
| TTTCATGCACGACTATATCT+TGG | + | tig0026573:21568-21587 | Msa1429890:CDS | 35.0% | |
| TTCATGCACGACTATATCTT+GGG | + | tig0026573:21569-21588 | Msa1429890:CDS | 35.0% | |
| TTTATTCATGTGGCTACTTG+CGG | - | tig0026573:21616-21635 | None:intergenic | 35.0% | |
| AGCAGACAAGAGACGATAAT+CGG | + | tig0026573:16368-16387 | Msa1429890:five_prime_UTR | 40.0% | |
| GATTAATGCCATGGACATGA+TGG | + | tig0026573:16458-16477 | Msa1429890:exon | 40.0% | |
| ACTTTGCTTAAGGGACAATC+AGG | - | tig0026573:16991-17010 | None:intergenic | 40.0% | |
| AGTTTACTCGATTGGACTTG+CGG | + | tig0026573:17085-17104 | Msa1429890:intron | 40.0% | |
| GTTCTACCCGCTATCAATTT+CGG | + | tig0026573:18342-18361 | Msa1429890:intron | 40.0% | |
| TAGTCCACCGAAATTGATAG+CGG | - | tig0026573:18352-18371 | None:intergenic | 40.0% | |
| ATATTCTCTATGACGTCGCT+TGG | + | tig0026573:18669-18688 | Msa1429890:intron | 40.0% | |
| TATTCTCTATGACGTCGCTT+GGG | + | tig0026573:18670-18689 | Msa1429890:intron | 40.0% | |
| ATCTATTGAAACAGGACTGG+AGG | + | tig0026573:18970-18989 | Msa1429890:CDS | 40.0% | |
| CAGCAATATTCTCAACTCCA+AGG | - | tig0026573:19094-19113 | None:intergenic | 40.0% | |
| CTTGGAGTTGAGAATATTGC+TGG | + | tig0026573:19092-19111 | Msa1429890:CDS | 40.0% | |
| TTGCTTGAGCATGAGATTGT+TGG | - | tig0026573:19135-19154 | None:intergenic | 40.0% | |
| TAACTAATGGCTTGAAGTGG+TGG | + | tig0026573:19408-19427 | Msa1429890:intron | 40.0% | |
| !! | TGAAGTGGTGGACAGATATT+TGG | + | tig0026573:19420-19439 | Msa1429890:intron | 40.0% |
| !!! | AGTTGCTGCTGGTTTTATTG+TGG | + | tig0026573:19455-19474 | Msa1429890:CDS | 40.0% |
| !!! | GTTGCTGCTGGTTTTATTGT+GGG | + | tig0026573:19456-19475 | Msa1429890:CDS | 40.0% |
| !!! | TTGCTGCTGGTTTTATTGTG+GGG | + | tig0026573:19457-19476 | Msa1429890:CDS | 40.0% |
| !!! | GGTTTTATTGTGGGGAAAGA+AGG | + | tig0026573:19465-19484 | Msa1429890:CDS | 40.0% |
| !! | AATATCGACTCACCTGGAAA+TGG | + | tig0026573:19547-19566 | Msa1429890:CDS | 40.0% |
| !! | CAGTAGTAGCAGTTGTTTTG+AGG | + | tig0026573:19739-19758 | Msa1429890:CDS | 40.0% |
| AAATATAACTGCGAGGAGGT+CGG | - | tig0026573:19871-19890 | None:intergenic | 40.0% | |
| CAAGAAATATAACTGCGAGG+AGG | - | tig0026573:19875-19894 | None:intergenic | 40.0% | |
| CTCCTCGCAGTTATATTTCT+TGG | + | tig0026573:19873-19892 | Msa1429890:CDS | 40.0% | |
| CTCCAAGAAATATAACTGCG+AGG | - | tig0026573:19878-19897 | None:intergenic | 40.0% | |
| GATAAAGTCCTTCGCACTTA+CGG | + | tig0026573:19939-19958 | Msa1429890:CDS | 40.0% | |
| GTAACCTCCTGTATTCGATT+TGG | + | tig0026573:20332-20351 | Msa1429890:CDS | 40.0% | |
| ! | AGATCATTGTAGTGGTTTGG+TGG | - | tig0026573:20452-20471 | None:intergenic | 40.0% |
| CTGAGATCATTGTAGTGGTT+TGG | - | tig0026573:20455-20474 | None:intergenic | 40.0% | |
| AACCATCGTTGAATAGGTTG+CGG | - | tig0026573:20511-20530 | None:intergenic | 40.0% | |
| ! | GAGACTTGATAGCTGAAATC+CGG | - | tig0026573:20549-20568 | None:intergenic | 40.0% |
| TTTGTGGCGATATACTTGCT+TGG | + | tig0026573:20578-20597 | Msa1429890:CDS | 40.0% | |
| TGATCAGATTGTGGAGTTGA+AGG | + | tig0026573:20892-20911 | Msa1429890:CDS | 40.0% | |
| GATCAGATTGTGGAGTTGAA+GGG | + | tig0026573:20893-20912 | Msa1429890:CDS | 40.0% | |
| GTTGAAGGGACTACCTTATA+TGG | + | tig0026573:20907-20926 | Msa1429890:CDS | 40.0% | |
| TCTGCATGTGCTTCCATATA+AGG | - | tig0026573:20923-20942 | None:intergenic | 40.0% | |
| GCCATACATGAGGAATTTAG+TGG | + | tig0026573:20943-20962 | Msa1429890:CDS | 40.0% | |
| GCCACTAAATTCCTCATGTA+TGG | - | tig0026573:20947-20966 | None:intergenic | 40.0% | |
| TACATGAGGAATTTAGTGGC+AGG | + | tig0026573:20947-20966 | Msa1429890:CDS | 40.0% | |
| ACATGAGGAATTTAGTGGCA+GGG | + | tig0026573:20948-20967 | Msa1429890:CDS | 40.0% | |
| ! | GGTCCACTGTTTTCTTTTTG+TGG | + | tig0026573:20983-21002 | Msa1429890:CDS | 40.0% |
| AGCACAAGACATTGTTCACT+AGG | + | tig0026573:21146-21165 | Msa1429890:CDS | 40.0% | |
| GCACAAGACATTGTTCACTA+GGG | + | tig0026573:21147-21166 | Msa1429890:CDS | 40.0% | |
| AGGGTCTACTATTGTGAACA+AGG | + | tig0026573:21183-21202 | Msa1429890:CDS | 40.0% | |
| TTGTGAACAAGGTTAAGGCA+AGG | + | tig0026573:21194-21213 | Msa1429890:CDS | 40.0% | |
| TGTGAACAAGGTTAAGGCAA+GGG | + | tig0026573:21195-21214 | Msa1429890:CDS | 40.0% | |
| ! | GGATTTTGCAAAACCAGGTT+TGG | + | tig0026573:21216-21235 | Msa1429890:CDS | 40.0% |
| GGATTTGGACATTTCACAAG+AGG | + | tig0026573:21258-21277 | Msa1429890:CDS | 40.0% | |
| ! | CAAAAGCCGCTCTTCTTTTT+CGG | + | tig0026573:21356-21375 | Msa1429890:CDS | 40.0% |
| ! | AAAAGCCGCTCTTCTTTTTC+GGG | + | tig0026573:21357-21376 | Msa1429890:CDS | 40.0% |
| TTATTCATGTGGCTACTTGC+GGG | - | tig0026573:21615-21634 | None:intergenic | 40.0% | |
| TAGTGACTCCATCATGTCCA+TGG | - | tig0026573:16469-16488 | None:intergenic | 45.0% | |
| ! | CATGATGGAGTCACTAACAG+AGG | + | tig0026573:16473-16492 | Msa1429890:CDS | 45.0% |
| TGGAGTCACTAACAGAGGAA+AGG | + | tig0026573:16478-16497 | Msa1429890:CDS | 45.0% | |
| !! | GCAAATATTGGCTCCAACGA+TGG | - | tig0026573:16580-16599 | None:intergenic | 45.0% |
| AGTCTACGAGTCACTTAGCT+CGG | - | tig0026573:17046-17065 | None:intergenic | 45.0% | |
| !!! | TGTGTGCGTTTTTGGCTACT+AGG | + | tig0026573:17413-17432 | Msa1429890:intron | 45.0% |
| TAGGGACTAATACTCAGTGC+AGG | - | tig0026573:17638-17657 | None:intergenic | 45.0% | |
| ! | AGTCCACCGAAATTGATAGC+GGG | - | tig0026573:18351-18370 | None:intergenic | 45.0% |
| ATTCTCTATGACGTCGCTTG+GGG | + | tig0026573:18671-18690 | Msa1429890:intron | 45.0% | |
| ! | TTTGGTGGCATGGATTATGC+AGG | + | tig0026573:18934-18953 | Msa1429890:intron | 45.0% |
| TGGACCCTTGCACTTCTTAT+TGG | + | tig0026573:19035-19054 | Msa1429890:CDS | 45.0% | |
| !! | GCTCAAGCAAAAGTATCACG+AGG | + | tig0026573:19145-19164 | Msa1429890:CDS | 45.0% |
| AGGAGCAATGTAAGCACACA+GGG | - | tig0026573:19222-19241 | None:intergenic | 45.0% | |
| TTGAGGTATGCTTTCACCTC+TGG | - | tig0026573:19266-19285 | None:intergenic | 45.0% | |
| ! | GAGGTGAAAGCATACCTCAA+CGG | + | tig0026573:19266-19285 | Msa1429890:CDS | 45.0% |
| AATGTGCATCAATGCCGTTG+AGG | - | tig0026573:19283-19302 | None:intergenic | 45.0% | |
| CTTGACAAAGAGGGTAGATG+GGG | - | tig0026573:19315-19334 | None:intergenic | 45.0% | |
| CCTTGACAAAGAGGGTAGAT+GGG | - | tig0026573:19316-19335 | None:intergenic | 45.0% | |
| ACCTTGACAAAGAGGGTAGA+TGG | - | tig0026573:19317-19336 | None:intergenic | 45.0% | |
| !! | TCGATTTTAGGAGTTGCTGC+TGG | + | tig0026573:19444-19463 | Msa1429890:CDS | 45.0% |
| CAAGCACCTGTATGAACCAT+GGG | - | tig0026573:19492-19511 | None:intergenic | 45.0% | |
| GCTAATTTACTCGGACAAGG+TGG | + | tig0026573:19516-19535 | Msa1429890:CDS | 45.0% | |
| ! | GAAGTATCTGAGCCATTTCC+AGG | - | tig0026573:19562-19581 | None:intergenic | 45.0% |
| AGGAGGGATTTGATTACGTG+CGG | + | tig0026573:19597-19616 | Msa1429890:CDS | 45.0% | |
| AACAACTGCTACTACTGCAG+TGG | - | tig0026573:19736-19755 | None:intergenic | 45.0% | |
| ATGCAATTCTGTCATCAGGG+AGG | + | tig0026573:19768-19787 | Msa1429890:CDS | 45.0% | |
| AGATGTGGTCTGTTTGGAGA+AGG | + | tig0026573:19795-19814 | Msa1429890:CDS | 45.0% | |
| GATGTGGTCTGTTTGGAGAA+GGG | + | tig0026573:19796-19815 | Msa1429890:CDS | 45.0% | |
| ATGTGGTCTGTTTGGAGAAG+GGG | + | tig0026573:19797-19816 | Msa1429890:CDS | 45.0% | |
| AATATAACTGCGAGGAGGTC+GGG | - | tig0026573:19870-19889 | None:intergenic | 45.0% | |
| AAGCCCAAATCGAATACAGG+AGG | - | tig0026573:20339-20358 | None:intergenic | 45.0% | |
| TGGAAGCCCAAATCGAATAC+AGG | - | tig0026573:20342-20361 | None:intergenic | 45.0% | |
| ! | GGCACACACTTTGATAGCAA+TGG | - | tig0026573:20362-20381 | None:intergenic | 45.0% |
| GTAGTGTATTGAGAAGCCTG+CGG | - | tig0026573:20414-20433 | None:intergenic | 45.0% | |
| GAGAGCTGAGATCATTGTAG+TGG | - | tig0026573:20460-20479 | None:intergenic | 45.0% | |
| ATCGTTGAATAGGTTGCGGA+TGG | - | tig0026573:20507-20526 | None:intergenic | 45.0% | |
| ATCCGCAACCTATTCAACGA+TGG | + | tig0026573:20506-20525 | Msa1429890:CDS | 45.0% | |
| AGGTGGAACCATCGTTGAAT+AGG | - | tig0026573:20517-20536 | None:intergenic | 45.0% | |
| AATGAAGAGTCCAGAGGGAA+TGG | - | tig0026573:20624-20643 | None:intergenic | 45.0% | |
| TTCATTCCCGTCATACTTGC+CGG | + | tig0026573:20638-20657 | Msa1429890:CDS | 45.0% | |
| ATACTTGCCGGAGCTTCTTA+CGG | + | tig0026573:20650-20669 | Msa1429890:CDS | 45.0% | |
| CTTCTTACGGGCGTCTTATA+GGG | + | tig0026573:20663-20682 | Msa1429890:CDS | 45.0% | |
| !! | TCCATTCACAGCTCTGGATA+CGG | + | tig0026573:20697-20716 | Msa1429890:CDS | 45.0% |
| GATGCTACCATTGGTCATGT+TGG | + | tig0026573:20820-20839 | Msa1429890:CDS | 45.0% | |
| AGGAGAACCAACATGACCAA+TGG | - | tig0026573:20830-20849 | None:intergenic | 45.0% | |
| !! | TCTCCTCGTTTCTAAGACAG+TGG | + | tig0026573:20844-20863 | Msa1429890:CDS | 45.0% |
| CATGAGGAATTTAGTGGCAG+GGG | + | tig0026573:20949-20968 | Msa1429890:CDS | 45.0% | |
| AAAGGAGGCTCATCAACTAC+TGG | - | tig0026573:21067-21086 | None:intergenic | 45.0% | |
| !! | AGTTGATGAGCCTCCTTTGA+CGG | + | tig0026573:21069-21088 | Msa1429890:CDS | 45.0% |
| !! | GGTGTTGAGGTCTCATCTTT+TGG | + | tig0026573:21114-21133 | Msa1429890:CDS | 45.0% |
| AGACATTGTTCACTAGGGAG+AGG | + | tig0026573:21152-21171 | Msa1429890:CDS | 45.0% | |
| GACATTGTTCACTAGGGAGA+GGG | + | tig0026573:21153-21172 | Msa1429890:CDS | 45.0% | |
| ! | GCAAGGGATTTTGCAAAACC+AGG | + | tig0026573:21211-21230 | Msa1429890:CDS | 45.0% |
| CAAAACCAGGTTTGGGAAGA+GGG | + | tig0026573:21224-21243 | Msa1429890:CDS | 45.0% | |
| AGGTTTGGGAAGAGGGATAA+GGG | + | tig0026573:21231-21250 | Msa1429890:CDS | 45.0% | |
| GGACATTTCACAAGAGGAGA+TGG | + | tig0026573:21264-21283 | Msa1429890:CDS | 45.0% | |
| AAGCTCCCGAAAAAGAAGAG+CGG | - | tig0026573:21365-21384 | None:intergenic | 45.0% | |
| CTAGTTGTGCCTAAGAAACC+AGG | + | tig0026573:21400-21419 | Msa1429890:CDS | 45.0% | |
| CTTGTCAGGATCCCAACAAT+TGG | - | tig0026573:21542-21561 | None:intergenic | 45.0% | |
| CAATTGTTGGGATCCTGACA+AGG | + | tig0026573:21540-21559 | Msa1429890:CDS | 45.0% | |
| GCATGAAATCATGCCTTGTC+AGG | - | tig0026573:21556-21575 | None:intergenic | 45.0% | |
| ! | TACTTGCGGGGATTCAAGTT+GGG | - | tig0026573:21602-21621 | None:intergenic | 45.0% |
| TATTCATGTGGCTACTTGCG+GGG | - | tig0026573:21614-21633 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTCAAA+AGG | + | tig0026573:18313-18332 | Msa1429890:intron | 5.0% |
| !! | AATATTAGTTATAATAATAA+AGG | - | tig0026573:21490-21509 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGGATCGA+AGG | + | tig0026573:16341-16360 | Msa1429890:five_prime_UTR | 50.0% | |
| ! | AACGATGGCGAGTTGAGAAG+AGG | - | tig0026573:16565-16584 | None:intergenic | 50.0% |
| TCTTCTCAACTCGCCATCGT+TGG | + | tig0026573:16564-16583 | Msa1429890:CDS | 50.0% | |
| !!! | GCACTTGGTGTGTGCGTTTT+TGG | + | tig0026573:17405-17424 | Msa1429890:intron | 50.0% |
| !! | TTGGCTACTAGGCTCTGAGA+AGG | + | tig0026573:17424-17443 | Msa1429890:intron | 50.0% |
| CTACCCGCTATCAATTTCGG+TGG | + | tig0026573:18345-18364 | Msa1429890:intron | 50.0% | |
| TTCTCTATGACGTCGCTTGG+GGG | + | tig0026573:18672-18691 | Msa1429890:intron | 50.0% | |
| GGACTGGAGGTCAAGAACAA+AGG | + | tig0026573:18983-19002 | Msa1429890:CDS | 50.0% | |
| ! | GAGGCATTTGCAGTGTACGT+TGG | + | tig0026573:19164-19183 | Msa1429890:CDS | 50.0% |
| CAGGAGCAATGTAAGCACAC+AGG | - | tig0026573:19223-19242 | None:intergenic | 50.0% | |
| CCCATCTACCCTCTTTGTCA+AGG | + | tig0026573:19313-19332 | Msa1429890:CDS | 50.0% | |
| GAAGGACCCATGGTTCATAC+AGG | + | tig0026573:19483-19502 | Msa1429890:CDS | 50.0% | |
| GCAAGCACCTGTATGAACCA+TGG | - | tig0026573:19493-19512 | None:intergenic | 50.0% | |
| !! | CGCGTAAATATCGACTCACC+TGG | + | tig0026573:19541-19560 | Msa1429890:CDS | 50.0% |
| TGCGAACAGAACACCACCAA+CGG | - | tig0026573:19658-19677 | None:intergenic | 50.0% | |
| CACTCGAAGAAGCAGCTTCA+TGG | + | tig0026573:19676-19695 | Msa1429890:CDS | 50.0% | |
| TCGAAGAAGCAGCTTCATGG+TGG | + | tig0026573:19679-19698 | Msa1429890:CDS | 50.0% | |
| AAGAAGCAGCTTCATGGTGG+AGG | + | tig0026573:19682-19701 | Msa1429890:CDS | 50.0% | |
| CAATTCTGTCATCAGGGAGG+AGG | + | tig0026573:19771-19790 | Msa1429890:CDS | 50.0% | |
| TGTGGTCTGTTTGGAGAAGG+GGG | + | tig0026573:19798-19817 | Msa1429890:CDS | 50.0% | |
| TGGAGTCATTGGAGGTCTCA+TGG | + | tig0026573:19893-19912 | Msa1429890:CDS | 50.0% | |
| GGAGTCATTGGAGGTCTCAT+GGG | + | tig0026573:19894-19913 | Msa1429890:CDS | 50.0% | |
| TTATAGCGCCGTAAGTGCGA+AGG | - | tig0026573:19950-19969 | None:intergenic | 50.0% | |
| TCAAAGTGTGTGCCATGTCC+AGG | + | tig0026573:20368-20387 | Msa1429890:CDS | 50.0% | |
| CAAAGTGTGTGCCATGTCCA+GGG | + | tig0026573:20369-20388 | Msa1429890:CDS | 50.0% | |
| AAAGTGTGTGCCATGTCCAG+GGG | + | tig0026573:20370-20389 | Msa1429890:CDS | 50.0% | |
| TATTGAGAAGCCTGCGGTTG+GGG | - | tig0026573:20408-20427 | None:intergenic | 50.0% | |
| GTATTGAGAAGCCTGCGGTT+GGG | - | tig0026573:20409-20428 | None:intergenic | 50.0% | |
| TGTATTGAGAAGCCTGCGGT+TGG | - | tig0026573:20410-20429 | None:intergenic | 50.0% | |
| ACGGGAATGAAGAGTCCAGA+GGG | - | tig0026573:20629-20648 | None:intergenic | 50.0% | |
| AGAAGCTCCGGCAAGTATGA+CGG | - | tig0026573:20648-20667 | None:intergenic | 50.0% | |
| TACTTGCCGGAGCTTCTTAC+GGG | + | tig0026573:20651-20670 | Msa1429890:CDS | 50.0% | |
| GCTTCTTACGGGCGTCTTAT+AGG | + | tig0026573:20662-20681 | Msa1429890:CDS | 50.0% | |
| GCGTCTTATAGGGACTGTGA+TGG | + | tig0026573:20673-20692 | Msa1429890:CDS | 50.0% | |
| !! | CCATTCACAGCTCTGGATAC+GGG | + | tig0026573:20698-20717 | Msa1429890:CDS | 50.0% |
| ! | ACGGGTTTGTTTGCTCTCCT+TGG | + | tig0026573:20716-20735 | Msa1429890:CDS | 50.0% |
| !! | TCATTCTCATGGTGCCACCA+AGG | - | tig0026573:20754-20773 | None:intergenic | 50.0% |
| CAGCCACTGTCTTAGAAACG+AGG | - | tig0026573:20850-20869 | None:intergenic | 50.0% | |
| CACATGCAGAGCCATACATG+AGG | + | tig0026573:20933-20952 | Msa1429890:CDS | 50.0% | |
| GCAAAACCAGGTTTGGGAAG+AGG | + | tig0026573:21223-21242 | Msa1429890:CDS | 50.0% | |
| CTTATCCCTCTTCCCAAACC+TGG | - | tig0026573:21232-21251 | None:intergenic | 50.0% | |
| CAGGTTTGGGAAGAGGGATA+AGG | + | tig0026573:21230-21249 | Msa1429890:CDS | 50.0% | |
| TTTGGGAAGAGGGATAAGGG+TGG | + | tig0026573:21234-21253 | Msa1429890:CDS | 50.0% | |
| AGGGATAAGGGTGGAGGATT+TGG | + | tig0026573:21243-21262 | Msa1429890:CDS | 50.0% | |
| !!! | GCTCTTCTTTTTCGGGAGCT+TGG | + | tig0026573:21364-21383 | Msa1429890:CDS | 50.0% |
| !!! | TTTTTCGGGAGCTTGGACTC+AGG | + | tig0026573:21371-21390 | Msa1429890:CDS | 50.0% |
| TGCAGAGGCCTCCAATTGTT+GGG | + | tig0026573:21528-21547 | Msa1429890:intron | 50.0% | |
| GTCAGGATCCCAACAATTGG+AGG | - | tig0026573:21539-21558 | None:intergenic | 50.0% | |
| !! | ACTTGCGGGGATTCAAGTTG+GGG | - | tig0026573:21601-21620 | None:intergenic | 50.0% |
| CTACTTGCGGGGATTCAAGT+TGG | - | tig0026573:21603-21622 | None:intergenic | 50.0% | |
| GCAGAGAGAGAGAGAGAGAG+AGG | + | tig0026573:16333-16352 | Msa1429890:five_prime_UTR | 55.0% | |
| TCTCTATGACGTCGCTTGGG+GGG | + | tig0026573:18673-18692 | Msa1429890:intron | 55.0% | |
| TACATTGCTCCTGCAGCTGC+TGG | + | tig0026573:19230-19249 | Msa1429890:CDS | 55.0% | |
| TGTGGGGAAAGAAGGACCCA+TGG | + | tig0026573:19473-19492 | Msa1429890:CDS | 55.0% | |
| GAACAGAACACCACCAACGG+GGG | - | tig0026573:19655-19674 | None:intergenic | 55.0% | |
| CGAACAGAACACCACCAACG+GGG | - | tig0026573:19656-19675 | None:intergenic | 55.0% | |
| GCGAACAGAACACCACCAAC+GGG | - | tig0026573:19657-19676 | None:intergenic | 55.0% | |
| GGAGGCAGATGTGGTCTGTT+TGG | + | tig0026573:19789-19808 | Msa1429890:CDS | 55.0% | |
| AAATCCGGCGTTAGCAGAGG+TGG | - | tig0026573:20534-20553 | None:intergenic | 55.0% | |
| CTGAAATCCGGCGTTAGCAG+AGG | - | tig0026573:20537-20556 | None:intergenic | 55.0% | |
| !! | TACGGTGTTGCCATTCCCTC+TGG | + | tig0026573:20611-20630 | Msa1429890:CDS | 55.0% |
| GACGGGAATGAAGAGTCCAG+AGG | - | tig0026573:20630-20649 | None:intergenic | 55.0% | |
| GAAGCTCCGGCAAGTATGAC+GGG | - | tig0026573:20647-20666 | None:intergenic | 55.0% | |
| AAGACGCCCGTAAGAAGCTC+CGG | - | tig0026573:20660-20679 | None:intergenic | 55.0% | |
| GATGGCTCCATTCACAGCTC+TGG | + | tig0026573:20691-20710 | Msa1429890:CDS | 55.0% | |
| CCCGTATCCAGAGCTGTGAA+TGG | - | tig0026573:20701-20720 | None:intergenic | 55.0% | |
| CAAGGAAAGATGCGGCTCCA+AGG | - | tig0026573:20736-20755 | None:intergenic | 55.0% | |
| CTTGGAGCCGCATCTTTCCT+TGG | + | tig0026573:20734-20753 | Msa1429890:CDS | 55.0% | |
| ! | GGTGCCACCAAGGAAAGATG+CGG | - | tig0026573:20744-20763 | None:intergenic | 55.0% |
| !! | GTGGCAGGGGATGTTGTTTC+TGG | + | tig0026573:20962-20981 | Msa1429890:CDS | 55.0% |
| !! | AACTCGGGAGCATCCGTCAA+AGG | - | tig0026573:21085-21104 | None:intergenic | 55.0% |
| AACACCAACCCGCACAACTC+GGG | - | tig0026573:21100-21119 | None:intergenic | 55.0% | |
| CAACACCAACCCGCACAACT+CGG | - | tig0026573:21101-21120 | None:intergenic | 55.0% | |
| !! | AGTTGTGCGGGTTGGTGTTG+AGG | + | tig0026573:21101-21120 | Msa1429890:CDS | 55.0% |
| ACTAGGGAGAGGGTGATGAC+AGG | + | tig0026573:21163-21182 | Msa1429890:CDS | 55.0% | |
| CTAGGGAGAGGGTGATGACA+GGG | + | tig0026573:21164-21183 | Msa1429890:CDS | 55.0% | |
| GTGCAGAGGCCTCCAATTGT+TGG | + | tig0026573:21527-21546 | Msa1429890:intron | 55.0% | |
| !! | TGCTGGCTCTGGCATACCAG+AGG | + | tig0026573:19247-19266 | Msa1429890:CDS | 60.0% |
| ATTACGTGCGGTGCAGCTGC+TGG | + | tig0026573:19609-19628 | Msa1429890:CDS | 60.0% | |
| !! | GGTGGAGGAGTGCTCTTCTG+TGG | + | tig0026573:19697-19716 | Msa1429890:CDS | 60.0% |
| CATCAGGGAGGAGGCAGATG+TGG | + | tig0026573:19780-19799 | Msa1429890:CDS | 60.0% | |
| GTTGCGGATGGCATCGTCGT+TGG | - | tig0026573:20495-20514 | None:intergenic | 60.0% | |
| GGTTCCACCTCTGCTAACGC+CGG | + | tig0026573:20527-20546 | Msa1429890:CDS | 60.0% | |
| GGAGCCGCATCTTTCCTTGG+TGG | + | tig0026573:20737-20756 | Msa1429890:CDS | 60.0% | |
| !! | TCGGGAGCATCCGTCAAAGG+AGG | - | tig0026573:21082-21101 | None:intergenic | 60.0% |
| ACGGATGCTCCCGAGTTGTG+CGG | + | tig0026573:21088-21107 | Msa1429890:CDS | 60.0% | |
| GGGAAGAGGGATAAGGGTGG+AGG | + | tig0026573:21237-21256 | Msa1429890:CDS | 60.0% | |
| ATGCCAGAGCCAGCAGCTGC+AGG | - | tig0026573:19242-19261 | None:intergenic | 65.0% | |
| GAACACCACCAACGGGGGCA+CGG | - | tig0026573:19650-19669 | None:intergenic | 65.0% | |
| AGGTCGGGTGTGGTGTAGGC+AGG | - | tig0026573:19855-19874 | None:intergenic | 65.0% | |
| GAGGAGGTCGGGTGTGGTGT+AGG | - | tig0026573:19859-19878 | None:intergenic | 65.0% | |
| AACTGCGAGGAGGTCGGGTG+TGG | - | tig0026573:19865-19884 | None:intergenic | 65.0% | |
| CTGGGACACTCCCCTGGACA+TGG | - | tig0026573:20383-20402 | None:intergenic | 65.0% | |
| AAGCCTGCGGTTGGGGAGCT+GGG | - | tig0026573:20401-20420 | None:intergenic | 65.0% | |
| CGGATGCTCCCGAGTTGTGC+GGG | + | tig0026573:21089-21108 | Msa1429890:CDS | 65.0% | |
| TGCTCCCGAGTTGTGCGGGT+TGG | + | tig0026573:21093-21112 | Msa1429890:CDS | 65.0% | |
| !! | GCTCCTGCAGCTGCTGGCTC+TGG | + | tig0026573:19236-19255 | Msa1429890:CDS | 70.0% |
| ! | AACGGGGGCACGGAAGGCTG+CGG | - | tig0026573:19640-19659 | None:intergenic | 70.0% |
| ! | ACCACCAACGGGGGCACGGA+AGG | - | tig0026573:19646-19665 | None:intergenic | 70.0% |
| TGTCCCAGCTCCCCAACCGC+AGG | + | tig0026573:20395-20414 | Msa1429890:CDS | 70.0% | |
| GAAGCCTGCGGTTGGGGAGC+TGG | - | tig0026573:20402-20421 | None:intergenic | 70.0% | |
| GCAGCCTTCCGTGCCCCCGT+TGG | + | tig0026573:19639-19658 | Msa1429890:CDS | 75.0% | |
| GCCTTCCGTGCCCCCGTTGG+TGG | + | tig0026573:19642-19661 | Msa1429890:CDS | 75.0% | |
| GGGGAGCTGGGACACTCCCC+TGG | - | tig0026573:20389-20408 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026573 | gene | 16305 | 21677 | 16305 | ID=Msa1429890;Name=Msa1429890 |
| tig0026573 | mRNA | 16305 | 21677 | 16305 | ID=Msa1429890-mRNA-1;Parent=Msa1429890;Name=Msa1429890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=163|1|0.8|1|1|1|5|55|766 |
| tig0026573 | exon | 16305 | 16622 | 16305 | ID=Msa1429890-mRNA-1:exon:6717;Parent=Msa1429890-mRNA-1 |
| tig0026573 | exon | 18956 | 19334 | 18956 | ID=Msa1429890-mRNA-1:exon:6718;Parent=Msa1429890-mRNA-1 |
| tig0026573 | exon | 19435 | 19973 | 19435 | ID=Msa1429890-mRNA-1:exon:6719;Parent=Msa1429890-mRNA-1 |
| tig0026573 | exon | 20286 | 21423 | 20286 | ID=Msa1429890-mRNA-1:exon:6720;Parent=Msa1429890-mRNA-1 |
| tig0026573 | exon | 21533 | 21677 | 21533 | ID=Msa1429890-mRNA-1:exon:6721;Parent=Msa1429890-mRNA-1 |
| tig0026573 | five_prime_UTR | 16305 | 16467 | 16305 | ID=Msa1429890-mRNA-1:five_prime_utr;Parent=Msa1429890-mRNA-1 |
| tig0026573 | CDS | 16468 | 16622 | 16468 | ID=Msa1429890-mRNA-1:cds;Parent=Msa1429890-mRNA-1 |
| tig0026573 | CDS | 18956 | 19334 | 18956 | ID=Msa1429890-mRNA-1:cds;Parent=Msa1429890-mRNA-1 |
| tig0026573 | CDS | 19435 | 19973 | 19435 | ID=Msa1429890-mRNA-1:cds;Parent=Msa1429890-mRNA-1 |
| tig0026573 | CDS | 20286 | 21423 | 20286 | ID=Msa1429890-mRNA-1:cds;Parent=Msa1429890-mRNA-1 |
| tig0026573 | CDS | 21533 | 21622 | 21533 | ID=Msa1429890-mRNA-1:cds;Parent=Msa1429890-mRNA-1 |
| tig0026573 | three_prime_UTR | 21623 | 21677 | 21623 | ID=Msa1429890-mRNA-1:three_prime_utr;Parent=Msa1429890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
