AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188840 MtrunA17_Chr2g0276881 98.394 249 4 0 1 249 513 761 8.49e-176 502
Msa0188840 MtrunA17_Chr4g0076971 78.486 251 48 2 1 249 529 775 1.54e-126 376
Msa0188840 MtrunA17_Chr6g0477391 71.084 249 71 1 1 249 546 793 3.42e-111 337
Msa0188840 MtrunA17_Chr4g0064521 62.449 245 91 1 1 245 511 754 3.41e-86 271
Msa0188840 MtrunA17_Chr6g0459451 51.575 254 114 4 1 249 520 769 4.73e-69 226
Msa0188840 MtrunA17_Chr7g0225591 49.807 259 116 5 1 249 536 790 5.74e-67 221
Msa0188840 MtrunA17_Chr5g0394301 44.770 239 122 6 1 234 523 756 8.57e-50 174
Msa0188840 MtrunA17_Chr5g0396861 71.667 60 14 1 184 243 57 113 7.10e-22 88.2
Msa0188840 MtrunA17_Chr5g0396861 69.355 62 19 0 1 62 1 62 4.76e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188840 AT5G49890.1 75.100 249 61 1 1 249 532 779 2.75e-123 369
Msa0188840 AT5G33280.1 62.249 249 93 1 1 249 506 753 1.62e-95 296
Msa0188840 AT3G27170.1 50.579 259 114 4 1 249 521 775 1.02e-66 220
Msa0188840 AT5G40890.2 48.617 253 122 3 1 249 390 638 1.97e-65 214
Msa0188840 AT5G40890.1 48.617 253 122 3 1 249 522 770 6.09e-65 215
Msa0188840 AT5G26240.2 44.538 238 122 6 1 234 520 751 2.52e-50 176
Msa0188840 AT5G26240.1 44.538 238 122 6 1 234 520 751 3.47e-50 175

Find 76 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCAGGGGATGTTGTTTC+TGG 0.134484 2_1:-4015575 Msa0188840:CDS
AGGGATAAGGGTGGAGGATT+TGG 0.218217 2_1:-4015294 Msa0188840:CDS
TCTGCATGTGCTTCCATATA+AGG 0.301605 2_1:+4015617 None:intergenic
TTATTCATGTGGCTACTTGC+GGG 0.305540 2_1:+4014925 None:intergenic
TTACTTACTCCTGGTTTCTT+AGG 0.328013 2_1:+4015128 None:intergenic
TACTTGCGGGGATTCAAGTT+GGG 0.335456 2_1:+4014938 None:intergenic
ATTGTTTCAACAACAGTATA+TGG 0.343669 2_1:+4015212 None:intergenic
CTTGGAGCCGCATCTTTCCT+TGG 0.354614 2_1:-4015803 Msa0188840:five_prime_UTR
GTTGAAGGGACTACCTTATA+TGG 0.362650 2_1:-4015630 Msa0188840:CDS
GGTGTTGAGGTCTCATCTTT+TGG 0.367282 2_1:-4015423 Msa0188840:CDS
GCAAAACCAGGTTTGGGAAG+AGG 0.390549 2_1:-4015314 Msa0188840:CDS
TTTCATGCACGACTATATCT+TGG 0.398252 2_1:-4014969 Msa0188840:CDS
CTTATCCCTCTTCCCAAACC+TGG 0.414445 2_1:+4015308 None:intergenic
TACTGTTTCCACGAAGCTAT+AGG 0.418181 2_1:+4014873 None:intergenic
CAGGTTTGGGAAGAGGGATA+AGG 0.427720 2_1:-4015307 Msa0188840:CDS
GCATGAAATCATGCCTTGTC+AGG 0.431401 2_1:+4014984 None:intergenic
TGCAGAGGCCTCCAATTGTT+GGG 0.432801 2_1:-4015009 Msa0188840:intron
CAAAACCAGGTTTGGGAAGA+GGG 0.444847 2_1:-4015313 Msa0188840:CDS
GCCACTAAATTCCTCATGTA+TGG 0.450639 2_1:+4015593 None:intergenic
GTGCAGAGGCCTCCAATTGT+TGG 0.453486 2_1:-4015010 Msa0188840:intron
AGGTTTGGGAAGAGGGATAA+GGG 0.453961 2_1:-4015306 Msa0188840:CDS
AGTTGATGAGCCTCCTTTGA+CGG 0.454792 2_1:-4015468 Msa0188840:CDS
CTACTTGCGGGGATTCAAGT+TGG 0.455750 2_1:+4014937 None:intergenic
TATGGAGAAGTATTTGTGAT+TGG 0.458788 2_1:+4015230 None:intergenic
TGATCAGATTGTGGAGTTGA+AGG 0.461511 2_1:-4015645 Msa0188840:CDS
TTCATGCACGACTATATCTT+GGG 0.468911 2_1:-4014968 Msa0188840:CDS
TTTATTCATGTGGCTACTTG+CGG 0.470591 2_1:+4014924 None:intergenic
TACTATTGTGAACAAGGTTA+AGG 0.471521 2_1:-4015348 Msa0188840:CDS
CTTGTCAGGATCCCAACAAT+TGG 0.493087 2_1:+4014998 None:intergenic
CATCAGATCCTATAGCTTCG+TGG 0.500885 2_1:-4014881 None:intergenic
AAAGGAGGCTCATCAACTAC+TGG 0.501049 2_1:+4015473 None:intergenic
GGAGCCGCATCTTTCCTTGG+TGG 0.504489 2_1:-4015800 Msa0188840:five_prime_UTR
GGACATTTCACAAGAGGAGA+TGG 0.507391 2_1:-4015273 Msa0188840:CDS
TACATGAGGAATTTAGTGGC+AGG 0.511292 2_1:-4015590 Msa0188840:CDS
TAACTTGTTGATGCTACCAT+TGG 0.520536 2_1:-4015726 Msa0188840:CDS
CAACACCAACCCGCACAACT+CGG 0.524524 2_1:+4015439 None:intergenic
AACACCAACCCGCACAACTC+GGG 0.524685 2_1:+4015440 None:intergenic
CGGATGCTCCCGAGTTGTGC+GGG 0.526808 2_1:-4015448 Msa0188840:CDS
TTTGGGAAGAGGGATAAGGG+TGG 0.528215 2_1:-4015303 Msa0188840:CDS
ACTAGGGAGAGGGTGATGAC+AGG 0.529305 2_1:-4015374 Msa0188840:CDS
GGGAAGAGGGATAAGGGTGG+AGG 0.531741 2_1:-4015300 Msa0188840:CDS
TATTCATGTGGCTACTTGCG+GGG 0.534257 2_1:+4014926 None:intergenic
GCCATACATGAGGAATTTAG+TGG 0.536201 2_1:-4015594 Msa0188840:CDS
GATCAGATTGTGGAGTTGAA+GGG 0.538314 2_1:-4015644 Msa0188840:CDS
GTCAGGATCCCAACAATTGG+AGG 0.542092 2_1:+4015001 None:intergenic
AGTTGTGCGGGTTGGTGTTG+AGG 0.544920 2_1:-4015436 Msa0188840:CDS
CTAGTTGTGCCTAAGAAACC+AGG 0.546145 2_1:-4015137 Msa0188840:CDS
CATGAGGAATTTAGTGGCAG+GGG 0.546458 2_1:-4015588 Msa0188840:CDS
ACGGATGCTCCCGAGTTGTG+CGG 0.550426 2_1:-4015449 Msa0188840:CDS
AACTCGGGAGCATCCGTCAA+AGG 0.551479 2_1:+4015455 None:intergenic
TGTGAACAAGGTTAAGGCAA+GGG 0.554225 2_1:-4015342 Msa0188840:CDS
AGCACAAGACATTGTTCACT+AGG 0.556246 2_1:-4015391 Msa0188840:CDS
GATGCTACCATTGGTCATGT+TGG 0.563949 2_1:-4015717 Msa0188840:CDS
GGATTTGGACATTTCACAAG+AGG 0.564011 2_1:-4015279 Msa0188840:CDS
TCTCCTCGTTTCTAAGACAG+TGG 0.567789 2_1:-4015693 Msa0188840:CDS
CAAGGAAAGATGCGGCTCCA+AGG 0.568106 2_1:+4015804 None:intergenic
TGCTCCCGAGTTGTGCGGGT+TGG 0.569910 2_1:-4015444 Msa0188840:CDS
ATATATAGTCTTTATTCATG+TGG 0.571536 2_1:+4014914 None:intergenic
CTAGGGAGAGGGTGATGACA+GGG 0.574990 2_1:-4015373 Msa0188840:CDS
ACATGAGGAATTTAGTGGCA+GGG 0.591059 2_1:-4015589 Msa0188840:CDS
TTGTGAACAAGGTTAAGGCA+AGG 0.592086 2_1:-4015343 Msa0188840:CDS
TAGAGAAACTGTCATTCTCA+TGG 0.593783 2_1:+4015775 None:intergenic
AGGTGTTTATGATCAGATTG+TGG 0.595548 2_1:-4015654 Msa0188840:CDS
CAATTGTTGGGATCCTGACA+AGG 0.596275 2_1:-4014997 Msa0188840:CDS
ACTTGCGGGGATTCAAGTTG+GGG 0.599332 2_1:+4014939 None:intergenic
GACATTGTTCACTAGGGAGA+GGG 0.615845 2_1:-4015384 Msa0188840:CDS
AGACATTGTTCACTAGGGAG+AGG 0.620397 2_1:-4015385 Msa0188840:CDS
TCATTCTCATGGTGCCACCA+AGG 0.628418 2_1:+4015786 None:intergenic
AGGGTCTACTATTGTGAACA+AGG 0.630406 2_1:-4015354 Msa0188840:CDS
TCGGGAGCATCCGTCAAAGG+AGG 0.647188 2_1:+4015458 None:intergenic
GCACAAGACATTGTTCACTA+GGG 0.647788 2_1:-4015390 Msa0188840:CDS
AGGAGAACCAACATGACCAA+TGG 0.653549 2_1:+4015710 None:intergenic
CAGCCACTGTCTTAGAAACG+AGG 0.666093 2_1:+4015690 None:intergenic
GGTGCCACCAAGGAAAGATG+CGG 0.680001 2_1:+4015796 None:intergenic
TTGAAAGTGACAGAACATCA+CGG 0.692777 2_1:-4015500 Msa0188840:CDS
CACATGCAGAGCCATACATG+AGG 0.706727 2_1:-4015604 Msa0188840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTGCAATATTTATTTG+TGG - chr2_1:4015582-4015601 Msa0188840:CDS 20.0%
!! ATATATAGTCTTTATTCATG+TGG + chr2_1:4015774-4015793 None:intergenic 20.0%
!!! TCTTTTGCAATATTTATTTG+TGG - chr2_1:4015582-4015601 Msa0188840:CDS 20.0%
!! ATATATAGTCTTTATTCATG+TGG + chr2_1:4015774-4015793 None:intergenic 20.0%
! ATTGTTTCAACAACAGTATA+TGG + chr2_1:4015476-4015495 None:intergenic 25.0%
! ATTGTTTCAACAACAGTATA+TGG + chr2_1:4015476-4015495 None:intergenic 25.0%
! TTTTTGTGGGATAGAAAAAG+TGG - chr2_1:4015145-4015164 Msa0188840:CDS 30.0%
! TTTTGTGGGATAGAAAAAGT+GGG - chr2_1:4015146-4015165 Msa0188840:CDS 30.0%
TACTATTGTGAACAAGGTTA+AGG - chr2_1:4015337-4015356 Msa0188840:CDS 30.0%
!! TATGGAGAAGTATTTGTGAT+TGG + chr2_1:4015458-4015477 None:intergenic 30.0%
AAATGTTAAACATTGTGCAG+AGG - chr2_1:4015661-4015680 Msa0188840:CDS 30.0%
! TTTTTGTGGGATAGAAAAAG+TGG - chr2_1:4015145-4015164 Msa0188840:CDS 30.0%
! TTTTGTGGGATAGAAAAAGT+GGG - chr2_1:4015146-4015165 Msa0188840:CDS 30.0%
TACTATTGTGAACAAGGTTA+AGG - chr2_1:4015337-4015356 Msa0188840:CDS 30.0%
!! TATGGAGAAGTATTTGTGAT+TGG + chr2_1:4015458-4015477 None:intergenic 30.0%
AAATGTTAAACATTGTGCAG+AGG - chr2_1:4015661-4015680 Msa0188840:CDS 30.0%
TAGAGAAACTGTCATTCTCA+TGG + chr2_1:4014913-4014932 None:intergenic 35.0%
!! TAACTTGTTGATGCTACCAT+TGG - chr2_1:4014959-4014978 Msa0188840:CDS 35.0%
!!! GTGGCTGATTGTTTTAACAA+AGG - chr2_1:4015011-4015030 Msa0188840:intron 35.0%
AGGTGTTTATGATCAGATTG+TGG - chr2_1:4015031-4015050 Msa0188840:intron 35.0%
! GTCCACTGTTTTCTTTTTGT+GGG - chr2_1:4015132-4015151 Msa0188840:intron 35.0%
ATCCCACAAAAAGAAAACAG+TGG + chr2_1:4015137-4015156 None:intergenic 35.0%
TTTGTGGGATAGAAAAAGTG+GGG - chr2_1:4015147-4015166 Msa0188840:CDS 35.0%
TTGAAAGTGACAGAACATCA+CGG - chr2_1:4015185-4015204 Msa0188840:CDS 35.0%
! GATTTTGCAAAACCAGGTTT+GGG - chr2_1:4015365-4015384 Msa0188840:CDS 35.0%
TTACTTACTCCTGGTTTCTT+AGG + chr2_1:4015560-4015579 None:intergenic 35.0%
CAAAAGAGATTACTTACTCC+TGG + chr2_1:4015569-4015588 None:intergenic 35.0%
TTTCATGCACGACTATATCT+TGG - chr2_1:4015716-4015735 Msa0188840:CDS 35.0%
TTCATGCACGACTATATCTT+GGG - chr2_1:4015717-4015736 Msa0188840:CDS 35.0%
TTTATTCATGTGGCTACTTG+CGG + chr2_1:4015764-4015783 None:intergenic 35.0%
TAGAGAAACTGTCATTCTCA+TGG + chr2_1:4014913-4014932 None:intergenic 35.0%
!! TAACTTGTTGATGCTACCAT+TGG - chr2_1:4014959-4014978 Msa0188840:CDS 35.0%
!!! GTGGCTGATTGTTTTAACAA+AGG - chr2_1:4015011-4015030 Msa0188840:intron 35.0%
AGGTGTTTATGATCAGATTG+TGG - chr2_1:4015031-4015050 Msa0188840:intron 35.0%
! GTCCACTGTTTTCTTTTTGT+GGG - chr2_1:4015132-4015151 Msa0188840:intron 35.0%
ATCCCACAAAAAGAAAACAG+TGG + chr2_1:4015137-4015156 None:intergenic 35.0%
TTTGTGGGATAGAAAAAGTG+GGG - chr2_1:4015147-4015166 Msa0188840:CDS 35.0%
TTGAAAGTGACAGAACATCA+CGG - chr2_1:4015185-4015204 Msa0188840:CDS 35.0%
! GATTTTGCAAAACCAGGTTT+GGG - chr2_1:4015365-4015384 Msa0188840:CDS 35.0%
TTACTTACTCCTGGTTTCTT+AGG + chr2_1:4015560-4015579 None:intergenic 35.0%
CAAAAGAGATTACTTACTCC+TGG + chr2_1:4015569-4015588 None:intergenic 35.0%
TTTCATGCACGACTATATCT+TGG - chr2_1:4015716-4015735 Msa0188840:CDS 35.0%
TTCATGCACGACTATATCTT+GGG - chr2_1:4015717-4015736 Msa0188840:CDS 35.0%
TTTATTCATGTGGCTACTTG+CGG + chr2_1:4015764-4015783 None:intergenic 35.0%
TGATCAGATTGTGGAGTTGA+AGG - chr2_1:4015040-4015059 Msa0188840:intron 40.0%
GATCAGATTGTGGAGTTGAA+GGG - chr2_1:4015041-4015060 Msa0188840:intron 40.0%
GTTGAAGGGACTACCTTATA+TGG - chr2_1:4015055-4015074 Msa0188840:intron 40.0%
TCTGCATGTGCTTCCATATA+AGG + chr2_1:4015071-4015090 None:intergenic 40.0%
GCCATACATGAGGAATTTAG+TGG - chr2_1:4015091-4015110 Msa0188840:intron 40.0%
GCCACTAAATTCCTCATGTA+TGG + chr2_1:4015095-4015114 None:intergenic 40.0%
TACATGAGGAATTTAGTGGC+AGG - chr2_1:4015095-4015114 Msa0188840:intron 40.0%
ACATGAGGAATTTAGTGGCA+GGG - chr2_1:4015096-4015115 Msa0188840:intron 40.0%
! GGTCCACTGTTTTCTTTTTG+TGG - chr2_1:4015131-4015150 Msa0188840:intron 40.0%
AGCACAAGACATTGTTCACT+AGG - chr2_1:4015294-4015313 Msa0188840:CDS 40.0%
GCACAAGACATTGTTCACTA+GGG - chr2_1:4015295-4015314 Msa0188840:CDS 40.0%
AGGGTCTACTATTGTGAACA+AGG - chr2_1:4015331-4015350 Msa0188840:CDS 40.0%
TTGTGAACAAGGTTAAGGCA+AGG - chr2_1:4015342-4015361 Msa0188840:CDS 40.0%
TGTGAACAAGGTTAAGGCAA+GGG - chr2_1:4015343-4015362 Msa0188840:CDS 40.0%
! GGATTTTGCAAAACCAGGTT+TGG - chr2_1:4015364-4015383 Msa0188840:CDS 40.0%
GGATTTGGACATTTCACAAG+AGG - chr2_1:4015406-4015425 Msa0188840:CDS 40.0%
! CAAAAGCCGCTCTTCTTTTT+CGG - chr2_1:4015504-4015523 Msa0188840:CDS 40.0%
! AAAAGCCGCTCTTCTTTTTC+GGG - chr2_1:4015505-4015524 Msa0188840:CDS 40.0%
TTATTCATGTGGCTACTTGC+GGG + chr2_1:4015763-4015782 None:intergenic 40.0%
TGATCAGATTGTGGAGTTGA+AGG - chr2_1:4015040-4015059 Msa0188840:intron 40.0%
GATCAGATTGTGGAGTTGAA+GGG - chr2_1:4015041-4015060 Msa0188840:intron 40.0%
GTTGAAGGGACTACCTTATA+TGG - chr2_1:4015055-4015074 Msa0188840:intron 40.0%
TCTGCATGTGCTTCCATATA+AGG + chr2_1:4015071-4015090 None:intergenic 40.0%
GCCATACATGAGGAATTTAG+TGG - chr2_1:4015091-4015110 Msa0188840:intron 40.0%
GCCACTAAATTCCTCATGTA+TGG + chr2_1:4015095-4015114 None:intergenic 40.0%
TACATGAGGAATTTAGTGGC+AGG - chr2_1:4015095-4015114 Msa0188840:intron 40.0%
ACATGAGGAATTTAGTGGCA+GGG - chr2_1:4015096-4015115 Msa0188840:intron 40.0%
! GGTCCACTGTTTTCTTTTTG+TGG - chr2_1:4015131-4015150 Msa0188840:intron 40.0%
AGCACAAGACATTGTTCACT+AGG - chr2_1:4015294-4015313 Msa0188840:CDS 40.0%
GCACAAGACATTGTTCACTA+GGG - chr2_1:4015295-4015314 Msa0188840:CDS 40.0%
AGGGTCTACTATTGTGAACA+AGG - chr2_1:4015331-4015350 Msa0188840:CDS 40.0%
TTGTGAACAAGGTTAAGGCA+AGG - chr2_1:4015342-4015361 Msa0188840:CDS 40.0%
TGTGAACAAGGTTAAGGCAA+GGG - chr2_1:4015343-4015362 Msa0188840:CDS 40.0%
! GGATTTTGCAAAACCAGGTT+TGG - chr2_1:4015364-4015383 Msa0188840:CDS 40.0%
GGATTTGGACATTTCACAAG+AGG - chr2_1:4015406-4015425 Msa0188840:CDS 40.0%
! CAAAAGCCGCTCTTCTTTTT+CGG - chr2_1:4015504-4015523 Msa0188840:CDS 40.0%
! AAAAGCCGCTCTTCTTTTTC+GGG - chr2_1:4015505-4015524 Msa0188840:CDS 40.0%
TTATTCATGTGGCTACTTGC+GGG + chr2_1:4015763-4015782 None:intergenic 40.0%
GATGCTACCATTGGTCATGT+TGG - chr2_1:4014968-4014987 Msa0188840:CDS 45.0%
AGGAGAACCAACATGACCAA+TGG + chr2_1:4014978-4014997 None:intergenic 45.0%
!! TCTCCTCGTTTCTAAGACAG+TGG - chr2_1:4014992-4015011 Msa0188840:CDS 45.0%
CATGAGGAATTTAGTGGCAG+GGG - chr2_1:4015097-4015116 Msa0188840:intron 45.0%
AAAGGAGGCTCATCAACTAC+TGG + chr2_1:4015215-4015234 None:intergenic 45.0%
!! AGTTGATGAGCCTCCTTTGA+CGG - chr2_1:4015217-4015236 Msa0188840:CDS 45.0%
!! GGTGTTGAGGTCTCATCTTT+TGG - chr2_1:4015262-4015281 Msa0188840:CDS 45.0%
AGACATTGTTCACTAGGGAG+AGG - chr2_1:4015300-4015319 Msa0188840:CDS 45.0%
GACATTGTTCACTAGGGAGA+GGG - chr2_1:4015301-4015320 Msa0188840:CDS 45.0%
! GCAAGGGATTTTGCAAAACC+AGG - chr2_1:4015359-4015378 Msa0188840:CDS 45.0%
CAAAACCAGGTTTGGGAAGA+GGG - chr2_1:4015372-4015391 Msa0188840:CDS 45.0%
AGGTTTGGGAAGAGGGATAA+GGG - chr2_1:4015379-4015398 Msa0188840:CDS 45.0%
GGACATTTCACAAGAGGAGA+TGG - chr2_1:4015412-4015431 Msa0188840:CDS 45.0%
AAGCTCCCGAAAAAGAAGAG+CGG + chr2_1:4015513-4015532 None:intergenic 45.0%
CTAGTTGTGCCTAAGAAACC+AGG - chr2_1:4015548-4015567 Msa0188840:CDS 45.0%
CTTGTCAGGATCCCAACAAT+TGG + chr2_1:4015690-4015709 None:intergenic 45.0%
CAATTGTTGGGATCCTGACA+AGG - chr2_1:4015688-4015707 Msa0188840:CDS 45.0%
GCATGAAATCATGCCTTGTC+AGG + chr2_1:4015704-4015723 None:intergenic 45.0%
! TACTTGCGGGGATTCAAGTT+GGG + chr2_1:4015750-4015769 None:intergenic 45.0%
TATTCATGTGGCTACTTGCG+GGG + chr2_1:4015762-4015781 None:intergenic 45.0%
GATGCTACCATTGGTCATGT+TGG - chr2_1:4014968-4014987 Msa0188840:CDS 45.0%
AGGAGAACCAACATGACCAA+TGG + chr2_1:4014978-4014997 None:intergenic 45.0%
!! TCTCCTCGTTTCTAAGACAG+TGG - chr2_1:4014992-4015011 Msa0188840:CDS 45.0%
CATGAGGAATTTAGTGGCAG+GGG - chr2_1:4015097-4015116 Msa0188840:intron 45.0%
AAAGGAGGCTCATCAACTAC+TGG + chr2_1:4015215-4015234 None:intergenic 45.0%
!! AGTTGATGAGCCTCCTTTGA+CGG - chr2_1:4015217-4015236 Msa0188840:CDS 45.0%
!! GGTGTTGAGGTCTCATCTTT+TGG - chr2_1:4015262-4015281 Msa0188840:CDS 45.0%
AGACATTGTTCACTAGGGAG+AGG - chr2_1:4015300-4015319 Msa0188840:CDS 45.0%
GACATTGTTCACTAGGGAGA+GGG - chr2_1:4015301-4015320 Msa0188840:CDS 45.0%
! GCAAGGGATTTTGCAAAACC+AGG - chr2_1:4015359-4015378 Msa0188840:CDS 45.0%
CAAAACCAGGTTTGGGAAGA+GGG - chr2_1:4015372-4015391 Msa0188840:CDS 45.0%
AGGTTTGGGAAGAGGGATAA+GGG - chr2_1:4015379-4015398 Msa0188840:CDS 45.0%
GGACATTTCACAAGAGGAGA+TGG - chr2_1:4015412-4015431 Msa0188840:CDS 45.0%
AAGCTCCCGAAAAAGAAGAG+CGG + chr2_1:4015513-4015532 None:intergenic 45.0%
CTAGTTGTGCCTAAGAAACC+AGG - chr2_1:4015548-4015567 Msa0188840:CDS 45.0%
CTTGTCAGGATCCCAACAAT+TGG + chr2_1:4015690-4015709 None:intergenic 45.0%
CAATTGTTGGGATCCTGACA+AGG - chr2_1:4015688-4015707 Msa0188840:CDS 45.0%
GCATGAAATCATGCCTTGTC+AGG + chr2_1:4015704-4015723 None:intergenic 45.0%
! TACTTGCGGGGATTCAAGTT+GGG + chr2_1:4015750-4015769 None:intergenic 45.0%
TATTCATGTGGCTACTTGCG+GGG + chr2_1:4015762-4015781 None:intergenic 45.0%
!! AATATTAGTTATAATAATAA+AGG + chr2_1:4015638-4015657 None:intergenic 5.0%
!! AATATTAGTTATAATAATAA+AGG + chr2_1:4015638-4015657 None:intergenic 5.0%
!! TCATTCTCATGGTGCCACCA+AGG + chr2_1:4014902-4014921 None:intergenic 50.0%
CAGCCACTGTCTTAGAAACG+AGG + chr2_1:4014998-4015017 None:intergenic 50.0%
CACATGCAGAGCCATACATG+AGG - chr2_1:4015081-4015100 Msa0188840:intron 50.0%
GCAAAACCAGGTTTGGGAAG+AGG - chr2_1:4015371-4015390 Msa0188840:CDS 50.0%
CTTATCCCTCTTCCCAAACC+TGG + chr2_1:4015380-4015399 None:intergenic 50.0%
CAGGTTTGGGAAGAGGGATA+AGG - chr2_1:4015378-4015397 Msa0188840:CDS 50.0%
TTTGGGAAGAGGGATAAGGG+TGG - chr2_1:4015382-4015401 Msa0188840:CDS 50.0%
AGGGATAAGGGTGGAGGATT+TGG - chr2_1:4015391-4015410 Msa0188840:CDS 50.0%
!!! GCTCTTCTTTTTCGGGAGCT+TGG - chr2_1:4015512-4015531 Msa0188840:CDS 50.0%
!!! TTTTTCGGGAGCTTGGACTC+AGG - chr2_1:4015519-4015538 Msa0188840:CDS 50.0%
TGCAGAGGCCTCCAATTGTT+GGG - chr2_1:4015676-4015695 Msa0188840:CDS 50.0%
GTCAGGATCCCAACAATTGG+AGG + chr2_1:4015687-4015706 None:intergenic 50.0%
!! ACTTGCGGGGATTCAAGTTG+GGG + chr2_1:4015749-4015768 None:intergenic 50.0%
CTACTTGCGGGGATTCAAGT+TGG + chr2_1:4015751-4015770 None:intergenic 50.0%
!! TCATTCTCATGGTGCCACCA+AGG + chr2_1:4014902-4014921 None:intergenic 50.0%
CAGCCACTGTCTTAGAAACG+AGG + chr2_1:4014998-4015017 None:intergenic 50.0%
CACATGCAGAGCCATACATG+AGG - chr2_1:4015081-4015100 Msa0188840:intron 50.0%
GCAAAACCAGGTTTGGGAAG+AGG - chr2_1:4015371-4015390 Msa0188840:CDS 50.0%
CTTATCCCTCTTCCCAAACC+TGG + chr2_1:4015380-4015399 None:intergenic 50.0%
CAGGTTTGGGAAGAGGGATA+AGG - chr2_1:4015378-4015397 Msa0188840:CDS 50.0%
TTTGGGAAGAGGGATAAGGG+TGG - chr2_1:4015382-4015401 Msa0188840:CDS 50.0%
AGGGATAAGGGTGGAGGATT+TGG - chr2_1:4015391-4015410 Msa0188840:CDS 50.0%
!!! GCTCTTCTTTTTCGGGAGCT+TGG - chr2_1:4015512-4015531 Msa0188840:CDS 50.0%
!!! TTTTTCGGGAGCTTGGACTC+AGG - chr2_1:4015519-4015538 Msa0188840:CDS 50.0%
TGCAGAGGCCTCCAATTGTT+GGG - chr2_1:4015676-4015695 Msa0188840:CDS 50.0%
GTCAGGATCCCAACAATTGG+AGG + chr2_1:4015687-4015706 None:intergenic 50.0%
!! ACTTGCGGGGATTCAAGTTG+GGG + chr2_1:4015749-4015768 None:intergenic 50.0%
CTACTTGCGGGGATTCAAGT+TGG + chr2_1:4015751-4015770 None:intergenic 50.0%
CTTGGAGCCGCATCTTTCCT+TGG - chr2_1:4014882-4014901 Msa0188840:three_prime_UTR 55.0%
! GGTGCCACCAAGGAAAGATG+CGG + chr2_1:4014892-4014911 None:intergenic 55.0%
!! GTGGCAGGGGATGTTGTTTC+TGG - chr2_1:4015110-4015129 Msa0188840:intron 55.0%
!! AACTCGGGAGCATCCGTCAA+AGG + chr2_1:4015233-4015252 None:intergenic 55.0%
AACACCAACCCGCACAACTC+GGG + chr2_1:4015248-4015267 None:intergenic 55.0%
CAACACCAACCCGCACAACT+CGG + chr2_1:4015249-4015268 None:intergenic 55.0%
!! AGTTGTGCGGGTTGGTGTTG+AGG - chr2_1:4015249-4015268 Msa0188840:CDS 55.0%
ACTAGGGAGAGGGTGATGAC+AGG - chr2_1:4015311-4015330 Msa0188840:CDS 55.0%
CTAGGGAGAGGGTGATGACA+GGG - chr2_1:4015312-4015331 Msa0188840:CDS 55.0%
GTGCAGAGGCCTCCAATTGT+TGG - chr2_1:4015675-4015694 Msa0188840:CDS 55.0%
CTTGGAGCCGCATCTTTCCT+TGG - chr2_1:4014882-4014901 Msa0188840:three_prime_UTR 55.0%
! GGTGCCACCAAGGAAAGATG+CGG + chr2_1:4014892-4014911 None:intergenic 55.0%
!! GTGGCAGGGGATGTTGTTTC+TGG - chr2_1:4015110-4015129 Msa0188840:intron 55.0%
!! AACTCGGGAGCATCCGTCAA+AGG + chr2_1:4015233-4015252 None:intergenic 55.0%
AACACCAACCCGCACAACTC+GGG + chr2_1:4015248-4015267 None:intergenic 55.0%
CAACACCAACCCGCACAACT+CGG + chr2_1:4015249-4015268 None:intergenic 55.0%
!! AGTTGTGCGGGTTGGTGTTG+AGG - chr2_1:4015249-4015268 Msa0188840:CDS 55.0%
ACTAGGGAGAGGGTGATGAC+AGG - chr2_1:4015311-4015330 Msa0188840:CDS 55.0%
CTAGGGAGAGGGTGATGACA+GGG - chr2_1:4015312-4015331 Msa0188840:CDS 55.0%
GTGCAGAGGCCTCCAATTGT+TGG - chr2_1:4015675-4015694 Msa0188840:CDS 55.0%
GGAGCCGCATCTTTCCTTGG+TGG - chr2_1:4014885-4014904 Msa0188840:three_prime_UTR 60.0%
!! TCGGGAGCATCCGTCAAAGG+AGG + chr2_1:4015230-4015249 None:intergenic 60.0%
ACGGATGCTCCCGAGTTGTG+CGG - chr2_1:4015236-4015255 Msa0188840:CDS 60.0%
GGGAAGAGGGATAAGGGTGG+AGG - chr2_1:4015385-4015404 Msa0188840:CDS 60.0%
GGAGCCGCATCTTTCCTTGG+TGG - chr2_1:4014885-4014904 Msa0188840:three_prime_UTR 60.0%
!! TCGGGAGCATCCGTCAAAGG+AGG + chr2_1:4015230-4015249 None:intergenic 60.0%
ACGGATGCTCCCGAGTTGTG+CGG - chr2_1:4015236-4015255 Msa0188840:CDS 60.0%
GGGAAGAGGGATAAGGGTGG+AGG - chr2_1:4015385-4015404 Msa0188840:CDS 60.0%
CGGATGCTCCCGAGTTGTGC+GGG - chr2_1:4015237-4015256 Msa0188840:CDS 65.0%
TGCTCCCGAGTTGTGCGGGT+TGG - chr2_1:4015241-4015260 Msa0188840:CDS 65.0%
CGGATGCTCCCGAGTTGTGC+GGG - chr2_1:4015237-4015256 Msa0188840:CDS 65.0%
TGCTCCCGAGTTGTGCGGGT+TGG - chr2_1:4015241-4015260 Msa0188840:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 4014882 4015825 4014882 ID=Msa0188840;Name=Msa0188840
chr2_1 mRNA 4014882 4015825 4014882 ID=Msa0188840-mRNA-1;Parent=Msa0188840;Name=Msa0188840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=30|1|1|1|1|0.5|2|55|249
chr2_1 exon 4014882 4015026 4014882 ID=Msa0188840-mRNA-1:exon:1733;Parent=Msa0188840-mRNA-1
chr2_1 exon 4015136 4015825 4015136 ID=Msa0188840-mRNA-1:exon:1732;Parent=Msa0188840-mRNA-1
chr2_1 five_prime_UTR 4015796 4015825 4015796 ID=Msa0188840-mRNA-1:five_prime_utr;Parent=Msa0188840-mRNA-1
chr2_1 CDS 4015136 4015795 4015136 ID=Msa0188840-mRNA-1:cds;Parent=Msa0188840-mRNA-1
chr2_1 CDS 4014937 4015026 4014937 ID=Msa0188840-mRNA-1:cds;Parent=Msa0188840-mRNA-1
chr2_1 three_prime_UTR 4014882 4014936 4014882 ID=Msa0188840-mRNA-1:three_prime_utr;Parent=Msa0188840-mRNA-1
Gene Sequence

>Msa0188840

ATGAGAATGACAGTTTCTCTATGTGTCATACTTCTTGAACTCACTAATAACTTGTTGATGCTACCATTGGTCATGTTGGTTCTCCTCGTTTCTAAGACAGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAGTTGAAGGGACTACCTTATATGGAAGCACATGCAGAGCCATACATGAGGAATTTAGTGGCAGGGGATGTTGTTTCTGGTCCACTGTTTTCTTTTTGTGGGATAGAAAAAGTGGGGAATATATTGCACGCTTTGAAAGTGACAGAACATCACGGATTTCCAGTAGTTGATGAGCCTCCTTTGACGGATGCTCCCGAGTTGTGCGGGTTGGTGTTGAGGTCTCATCTTTTGGTGCTTCTCAAGCACAAGACATTGTTCACTAGGGAGAGGGTGATGACAGGGTCTACTATTGTGAACAAGGTTAAGGCAAGGGATTTTGCAAAACCAGGTTTGGGAAGAGGGATAAGGGTGGAGGATTTGGACATTTCACAAGAGGAGATGGAAATGTTTGTTGATCTTCATCCAATCACAAATACTTCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCCGCTCTTCTTTTTCGGGAGCTTGGACTCAGGCATTTGCTAGTTGTGCCTAAGAAACCAGGAAGGCCTCCAATTGTTGGGATCCTGACAAGGCATGATTTCATGCACGACTATATCTTGGGTCTATTCCCCAACTTGAATCCCCGCAAGTAG

Protein sequence

>Msa0188840

MRMTVSLCVILLELTNNLLMLPLVMLVLLVSKTVADCFNKGVYDQIVELKGLPYMEAHAEPYMRNLVAGDVVSGPLFSFCGIEKVGNILHALKVTEHHGFPVVDEPPLTDAPELCGLVLRSHLLVLLKHKTLFTRERVMTGSTIVNKVKARDFAKPGLGRGIRVEDLDISQEEMEMFVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGRPPIVGILTRHDFMHDYILGLFPNLNPRK*