AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104900 MtrunA17_Chr1g0159621 94.241 955 39 3 1 951 1 943 0.0 1835
Msa0104900 MtrunA17_Chr3g0125211 66.486 922 252 11 50 951 30 914 0.0 1194
Msa0104900 MtrunA17_Chr4g0039281 44.161 274 127 8 686 951 197 452 2.62e-59 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104900 AT1G21640.1 58.573 939 319 12 30 951 34 919 0.0 1063
Msa0104900 AT1G21640.2 57.712 953 319 13 30 951 34 933 0.0 1054
Msa0104900 AT3G21070.2 44.322 273 128 7 686 951 201 456 1.99e-60 215
Msa0104900 AT3G21070.1 44.086 279 126 8 686 951 150 411 2.51e-60 214
Msa0104900 AT3G21070.3 44.322 273 128 7 686 951 279 534 1.23e-59 215
Msa0104900 AT3G21070.4 40.000 120 69 3 686 802 279 398 8.17e-18 87.4

Find 226 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGAGAAATTCCATTTA+AGG 0.117499 1_3:-13110656 None:intergenic
GATAAAATAGTTTCTGTTCT+TGG 0.162840 1_3:+13109716 Msa0104900:CDS
GAAATTCTTACCGCAATTTA+AGG 0.173847 1_3:+13110834 Msa0104900:CDS
TTCTGCTCGATTAGAATTAA+AGG 0.198861 1_3:+13113890 Msa0104900:CDS
TTTGGGATAATAATAAATTT+TGG 0.224648 1_3:-13107198 None:intergenic
AAGGCTTCATTCTGCATTAA+TGG 0.226394 1_3:+13109616 Msa0104900:CDS
CAAGGTAATGCAGCCTTAAA+TGG 0.229895 1_3:+13110643 Msa0104900:CDS
GTGGGTCCTGATAGTTTAAA+TGG 0.235665 1_3:+13110910 Msa0104900:CDS
GGAAAAGATCCTTCCTTATC+AGG 0.258160 1_3:-13110673 None:intergenic
GTCCTACACTATTTGCTAAT+TGG 0.269632 1_3:+13110023 Msa0104900:CDS
GTCCTGGAGGGGACCAGTTC+CGG 0.273978 1_3:+13109544 Msa0104900:CDS
TTTAACAACAGCACATTCTT+TGG 0.278780 1_3:-13111369 None:intergenic
CTTGCCAGAATTCCAGGTTT+TGG 0.283366 1_3:+13111755 Msa0104900:CDS
CCTTGTATCATGACTGTAAA+AGG 0.285238 1_3:-13111789 None:intergenic
AAAGGTCACGGAATCTTCTT+TGG 0.291776 1_3:+13111296 Msa0104900:CDS
TGACACTCACTTTGGTTATA+AGG 0.293938 1_3:-13112601 None:intergenic
AGGCATATTGTAGGATCTTT+AGG 0.296902 1_3:+13109585 Msa0104900:CDS
AACAATATGCACGGAACGTT+TGG 0.298253 1_3:-13113816 None:intergenic
AAATCTCCAAGGCTTGAAAA+TGG 0.303424 1_3:+13111120 Msa0104900:CDS
AAAGAAAGCTGAGATGTTCT+TGG 0.308420 1_3:+13111242 Msa0104900:CDS
GATGCAACACGCAGTTCTAT+TGG 0.318600 1_3:+13110574 Msa0104900:CDS
AAGAATGTCTGCTATGATTC+TGG 0.319807 1_3:+13109974 Msa0104900:CDS
ATTGTCATCGACCGTAATTT+CGG 0.320404 1_3:-13110965 None:intergenic
AATTCTAATCGAGCAGAATC+TGG 0.332072 1_3:-13113885 None:intergenic
CAATTTAAGGACATGGCTAT+TGG 0.337248 1_3:+13110847 Msa0104900:CDS
GGCAGGGACGATGTTCTTAC+TGG 0.338007 1_3:+13109764 Msa0104900:CDS
GCTGATCCATTTAAACTATC+AGG 0.341485 1_3:-13110916 None:intergenic
TTGTCATCGACCGTAATTTC+GGG 0.343242 1_3:-13110964 None:intergenic
GATGTACTTGCCAGAATTCC+AGG 0.343709 1_3:+13111749 Msa0104900:CDS
TCATTTAACCTTGGTTCCCT+TGG 0.351313 1_3:+13111999 Msa0104900:CDS
TTCATAGCAAGGAAGGAGTT+TGG 0.361927 1_3:+13110356 Msa0104900:CDS
CACCTTCGGGCTTGACTCTC+CGG 0.365207 1_3:+13107544 Msa0104900:CDS
ATCTGGAGAGCCCGAAATTA+CGG 0.366087 1_3:+13110954 Msa0104900:CDS
CAATGAGGTGGTTGTTGATC+GGG 0.368521 1_3:+13112532 Msa0104900:CDS
ATTTGATAATTGACATAATC+GGG 0.377033 1_3:-13110802 None:intergenic
GGTGCAGTCATAACTTCAAC+TGG 0.379017 1_3:-13110268 None:intergenic
AAATCCAAAACCTGGAATTC+TGG 0.379669 1_3:-13111759 None:intergenic
AAAGCTTGGGGACGAACTAT+TGG 0.380081 1_3:+13111392 Msa0104900:CDS
AGAAAGATCCTCCCTCAAAA+AGG 0.381684 1_3:+13110525 Msa0104900:CDS
TCCTGGAGGGGACCAGTTCC+GGG 0.383459 1_3:+13109545 Msa0104900:CDS
CTCGCAACCTGTTCCATTGT+TGG 0.385256 1_3:-13110289 None:intergenic
CGTAAAGGTAAAGCAATTCC+AGG 0.385617 1_3:+13112491 Msa0104900:CDS
CCAAGGTTAAATGACACAAT+AGG 0.386707 1_3:-13111990 None:intergenic
CAAGGTTAAATGACACAATA+GGG 0.386975 1_3:-13111989 None:intergenic
GACAGTGAATGTGGACAGAT+AGG 0.388238 1_3:-13113843 None:intergenic
GATTTGATAATTGACATAAT+CGG 0.389848 1_3:-13110803 None:intergenic
AAATGGAATTTCTCCTGATA+AGG 0.390422 1_3:+13110660 Msa0104900:CDS
TCATTCTCTCTTGGTGATGA+AGG 0.402302 1_3:-13111700 None:intergenic
CATTCAATCTTTGAAAGGTA+TGG 0.404554 1_3:-13112563 None:intergenic
GGTGGTGGATTTAACATGTC+AGG 0.407596 1_3:-13107177 None:intergenic
ATGTCAATTATCAAATCAAA+AGG 0.408195 1_3:+13110809 Msa0104900:CDS
GCATTATGCAATCCGTTGAC+TGG 0.408333 1_3:+13109641 Msa0104900:CDS
GATTAACCCTTTAAAAGCTC+AGG 0.408731 1_3:+13110711 Msa0104900:CDS
GACAATCAAAAGTCTGTGAA+TGG 0.413979 1_3:+13110982 Msa0104900:CDS
CGTCGTCAACGGGAGTTGTA+AGG 0.414483 1_3:+13111208 Msa0104900:CDS
CTAACGTGGTTACTAGATAA+AGG 0.422106 1_3:+13110139 Msa0104900:CDS
GTTTCCAATGGTACTATTGT+GGG 0.424786 1_3:+13110892 Msa0104900:CDS
CGCAGAGATTAGCGAGATTG+AGG 0.428348 1_3:+13109817 Msa0104900:CDS
TTTCATCTCGCTTCTGAAAA+CGG 0.431248 1_3:-13109858 None:intergenic
AGAATGTGATAACATGTTAG+AGG 0.432134 1_3:-13110461 None:intergenic
CATCTGCTATGGTGTCTAGA+TGG 0.435337 1_3:+13110383 Msa0104900:CDS
AACAATAGATTCCTAGGCTT+GGG 0.441120 1_3:+13107428 Msa0104900:CDS
CAATAACATTCATTCTCTCT+TGG 0.441399 1_3:-13111709 None:intergenic
CTAATCTCTGCGTCAAGAAA+GGG 0.444051 1_3:-13109806 None:intergenic
ATGTTCTTGGTTCGGACAGA+TGG 0.453009 1_3:+13111255 Msa0104900:CDS
GACTGCACCAACAATGGAAC+AGG 0.453609 1_3:+13110282 Msa0104900:CDS
AGATTCCTAGGCTTGGGCCT+GGG 0.454070 1_3:+13107434 Msa0104900:CDS
AATCTATTGTTGGTGAAGAA+TGG 0.454504 1_3:-13107416 None:intergenic
TTCACCAACAATAGATTCCT+AGG 0.456446 1_3:+13107422 Msa0104900:CDS
TAATGCAGAATGAAGCCTTT+CGG 0.457413 1_3:-13109612 None:intergenic
GATATGTGTGCGTCGTCAAC+GGG 0.459074 1_3:+13111198 Msa0104900:CDS
AAAAGCTCAGGTTCCTCCTC+CGG 0.459446 1_3:+13110723 Msa0104900:CDS
AGGATATCAAATACTTTCCC+TGG 0.460707 1_3:-13112509 None:intergenic
CCTATTGTGTCATTTAACCT+TGG 0.460829 1_3:+13111990 Msa0104900:CDS
GGAAAGGAAGAAGGATACTA+AGG 0.463261 1_3:+13107471 Msa0104900:CDS
AAGCTGAGATGTTCTTGGTT+CGG 0.463480 1_3:+13111247 Msa0104900:CDS
TCTAGTAGGACAACAGTAAA+CGG 0.468135 1_3:+13111018 Msa0104900:CDS
GCTCAGGTTGATCATCCATC+TGG 0.470441 1_3:+13110937 Msa0104900:CDS
GTGAACGATGCTATTTCATC+TGG 0.471293 1_3:+13110223 Msa0104900:CDS
GCTAATCTCTGCGTCAAGAA+AGG 0.471633 1_3:-13109807 None:intergenic
TCAATGAGGTGGTTGTTGAT+CGG 0.473844 1_3:+13112531 Msa0104900:CDS
CAACAATAGATTCCTAGGCT+TGG 0.475256 1_3:+13107427 Msa0104900:CDS
ATTAGCAAATAGTGTAGGAC+AGG 0.475860 1_3:-13110020 None:intergenic
ACTGCATATTCTACGGCTGC+TGG 0.476774 1_3:+13112812 Msa0104900:CDS
GCTTTACGCGATGAAGAGTT+GGG 0.476938 1_3:+13111162 Msa0104900:CDS
AGCTTTACGCGATGAAGAGT+TGG 0.477808 1_3:+13111161 Msa0104900:CDS
TGTTTCCAATGGTACTATTG+TGG 0.479120 1_3:+13110891 Msa0104900:CDS
TTTAAGCTCCGATCATCATC+AGG 0.480457 1_3:-13109926 None:intergenic
CAAGGTGATGGAGTCATTGT+TGG 0.482346 1_3:+13112773 Msa0104900:CDS
ACGCACACATATCGCCTTCA+AGG 0.482866 1_3:-13111188 None:intergenic
ATGATCGGAGCTTAAATGTA+TGG 0.483058 1_3:+13109933 Msa0104900:CDS
TCCTTGCTATGAAGATAGAT+AGG 0.483132 1_3:-13110346 None:intergenic
GCAAGTACATCATGCACATC+AGG 0.487460 1_3:-13111737 None:intergenic
ATGGTGTCTACATTACTCTT+AGG 0.489278 1_3:+13112444 Msa0104900:CDS
GATCGTTGAACTAACACAAA+TGG 0.489995 1_3:+13107319 Msa0104900:exon
CATAGCATTCAATCTTTGAA+AGG 0.491325 1_3:-13112568 None:intergenic
CCACAAAATCTACTTTCTCA+TGG 0.493285 1_3:-13111905 None:intergenic
TGATAGATCATGGGATTGGA+AGG 0.500969 1_3:-13109516 None:intergenic
AGTTTCTGTTCTTGGATGCA+TGG 0.501044 1_3:+13109724 Msa0104900:CDS
CTTACCGCAATTTAAGGACA+TGG 0.501593 1_3:+13110840 Msa0104900:CDS
CTGAAGTCGAGGCATATTGT+AGG 0.503127 1_3:+13109576 Msa0104900:CDS
ACCCGGAACTGGTCCCCTCC+AGG 0.504355 1_3:-13109546 None:intergenic
CTCAGCAACAGATGCTTATG+TGG 0.506563 1_3:+13111337 Msa0104900:CDS
GACTTAAGACAAGTCATTCA+CGG 0.506567 1_3:+13112407 Msa0104900:CDS
ATGATCTATCAAAATTGTCC+TGG 0.509243 1_3:+13109528 Msa0104900:CDS
AGTATCAAAGGAAAGGAAGA+AGG 0.510086 1_3:+13107462 Msa0104900:CDS
TAGTTTAAATGGATCAGCTC+AGG 0.510428 1_3:+13110921 Msa0104900:CDS
ACAATCAAAAGTCTGTGAAT+GGG 0.511700 1_3:+13110983 Msa0104900:CDS
CATTATGCAATCCGTTGACT+GGG 0.511984 1_3:+13109642 Msa0104900:CDS
TCAGCAATATCACCCGGAAC+TGG 0.514753 1_3:-13109557 None:intergenic
CGTCCCTGCCTTTGTTCACA+AGG 0.515046 1_3:-13109751 None:intergenic
TAGATTCCTAGGCTTGGGCC+TGG 0.516049 1_3:+13107433 Msa0104900:CDS
GGAATGCTTCTAGTTCTAGT+AGG 0.516272 1_3:+13111004 Msa0104900:CDS
CAAGCCTAGGAATCTATTGT+TGG 0.519309 1_3:-13107426 None:intergenic
GAAGAGTTGGGATCCCTTGA+AGG 0.521799 1_3:+13111174 Msa0104900:CDS
CAGGCATTAAATAATTCTGA+AGG 0.522487 1_3:-13109907 None:intergenic
CGATATGTGTGCGTCGTCAA+CGG 0.524377 1_3:+13111197 Msa0104900:CDS
TCCTTTGATACTCAAAGCCC+AGG 0.525339 1_3:-13107451 None:intergenic
GAAAATGGAACAGTCAAGGC+CGG 0.525663 1_3:+13111135 Msa0104900:CDS
TATCCCTTGTGAACAAAGGC+AGG 0.526158 1_3:+13109747 Msa0104900:CDS
GAAATTGTCTCTTACAGTCT+CGG 0.527981 1_3:-13110188 None:intergenic
GTAATTTCGGGCTCTCCAGA+TGG 0.529696 1_3:-13110952 None:intergenic
GTCATTGTTGGAACTCCTAC+GGG 0.534827 1_3:+13112785 Msa0104900:CDS
TACGGCTGCTGGAGGTTCCA+TGG 0.536543 1_3:+13112823 Msa0104900:CDS
AGATGAAATAGCATCGTTCA+CGG 0.537270 1_3:-13110221 None:intergenic
AAATAGCTCTGCAAAACTGC+AGG 0.538113 1_3:+13110486 Msa0104900:CDS
AGGACCCACAATAGTACCAT+TGG 0.538672 1_3:-13110896 None:intergenic
ACAGTGAATGTGGACAGATA+GGG 0.540155 1_3:-13113842 None:intergenic
GTCTTTCAGGTACAAGGTGA+TGG 0.540615 1_3:+13112761 Msa0104900:intron
TGTCATGTCTTTCAGGTACA+AGG 0.544304 1_3:+13112755 Msa0104900:intron
TCAAGGGGAATTACATTACA+TGG 0.545720 1_3:+13111047 Msa0104900:CDS
GAATGTGATAACATGTTAGA+GGG 0.546145 1_3:-13110460 None:intergenic
TCGCTTCTGAAAACGGCAAG+TGG 0.547859 1_3:-13109851 None:intergenic
GCCTGGGCTTTGAGTATCAA+AGG 0.548004 1_3:+13107450 Msa0104900:CDS
TTCTGAAAACGGCAAGTGGA+GGG 0.548295 1_3:-13109847 None:intergenic
GGTGAAGAATGGAGAAGAGT+TGG 0.548342 1_3:-13107405 None:intergenic
ATGTTACAGATAGCAGCAAA+AGG 0.548480 1_3:+13110323 Msa0104900:CDS
GGAATGTAGCGTCTCGTATG+AGG 0.551593 1_3:+13109664 Msa0104900:CDS
ATTTAATGCCTGATGATGAT+CGG 0.551924 1_3:+13109918 Msa0104900:CDS
GCAGAATCTGGAAGTATGAC+AGG 0.553043 1_3:-13113873 None:intergenic
CAAAGCCCAGGCCCAAGCCT+AGG 0.554328 1_3:-13107439 None:intergenic
AGAGAGAATGAATGTTATTG+TGG 0.554789 1_3:+13111712 Msa0104900:CDS
GCCTATCTATCTTCATAGCA+AGG 0.556380 1_3:+13110345 Msa0104900:CDS
GGGAAGTACTGCATATTCTA+CGG 0.557056 1_3:+13112805 Msa0104900:CDS
GTCTGCACAAATCCAAAACC+TGG 0.557507 1_3:-13111767 None:intergenic
AGTCATTGTTGGAACTCCTA+CGG 0.557721 1_3:+13112784 Msa0104900:CDS
GGAATTTCTCCTGATAAGGA+AGG 0.557805 1_3:+13110664 Msa0104900:CDS
AAGAAAGGGGTTCATAATTG+AGG 0.558581 1_3:-13109792 None:intergenic
TAATGACAAAAGAAAACTGC+AGG 0.558786 1_3:+13113788 Msa0104900:CDS
GGTAGTCAGGTAACAGAAGA+AGG 0.559745 1_3:+13110115 Msa0104900:CDS
TGTCAATTATCAAATCAAAA+GGG 0.561271 1_3:+13110810 Msa0104900:CDS
GTATGTAGTTTGACGACTAC+AGG 0.561542 1_3:+13112381 Msa0104900:intron
AGTTATGACTGCACCAACAA+TGG 0.561997 1_3:+13110276 Msa0104900:CDS
TTGGAAAAGATATCCGGAGG+AGG 0.566248 1_3:-13110736 None:intergenic
TTCTTCTTCTAAAGAAGACA+CGG 0.570642 1_3:+13110060 Msa0104900:CDS
ATCTATCTTCATAGCAAGGA+AGG 0.571744 1_3:+13110349 Msa0104900:CDS
GGCTTTGAGTATCAAAGGAA+AGG 0.573563 1_3:+13107455 Msa0104900:CDS
AGCATCTGTTGCTGAGTGCT+AGG 0.576041 1_3:-13111330 None:intergenic
ATATGCACGGAACGTTTGGA+TGG 0.577570 1_3:-13113812 None:intergenic
AATGAGGTGGTTGTTGATCG+GGG 0.579010 1_3:+13112533 Msa0104900:CDS
ACGCTACATTCCCCAGTCAA+CGG 0.582989 1_3:-13109653 None:intergenic
CTATCAAAATTGTCCTGGAG+GGG 0.585592 1_3:+13109533 Msa0104900:CDS
CAGTGAATGTGGACAGATAG+GGG 0.586339 1_3:-13113841 None:intergenic
ACAGTAAACGGATCAAGTCA+AGG 0.588409 1_3:+13111030 Msa0104900:CDS
AGAAGAAGTTGAATGAACTA+CGG 0.588609 1_3:-13107366 None:intergenic
GAAGGTGAATGAAAATGACT+TGG 0.590526 1_3:-13107528 None:intergenic
CTTCTGAAAACGGCAAGTGG+AGG 0.591574 1_3:-13109848 None:intergenic
AAGGGCAACATGTAAACTCT+CGG 0.591706 1_3:-13109888 None:intergenic
CACGGAAATACTTCACGAGA+TGG 0.591942 1_3:+13112425 Msa0104900:CDS
CAGTAAACGGATCAAGTCAA+GGG 0.592433 1_3:+13111031 Msa0104900:CDS
GGAGTCTGAAGAATTAGAAA+CGG 0.593217 1_3:+13110081 Msa0104900:CDS
AAAATGGAACAGTCAAGGCC+GGG 0.593920 1_3:+13111136 Msa0104900:CDS
TCTATCAAAATTGTCCTGGA+GGG 0.594114 1_3:+13109532 Msa0104900:CDS
ATCTATCAAAATTGTCCTGG+AGG 0.595257 1_3:+13109531 Msa0104900:CDS
GTCGTCAACGGGAGTTGTAA+GGG 0.596339 1_3:+13111209 Msa0104900:CDS
GAAGAGTTGGAGAACAAACA+TGG 0.598617 1_3:-13107392 None:intergenic
AAGAGACAATTTCTATCAAG+CGG 0.601979 1_3:+13110198 Msa0104900:CDS
GGAGATGTGGTTGTTTCCAA+TGG 0.604328 1_3:+13110880 Msa0104900:CDS
CAACAATGGAACAGGTTGCG+AGG 0.605355 1_3:+13110290 Msa0104900:CDS
CGCACACATATCGCCTTCAA+GGG 0.605429 1_3:-13111187 None:intergenic
GGTCTAAATGACAGTGAATG+TGG 0.605581 1_3:-13113852 None:intergenic
ATTCACAACGGCAGAGACGT+CGG 0.606609 1_3:-13111076 None:intergenic
AGTTTGGAGATCATCTGCTA+TGG 0.609973 1_3:+13110372 Msa0104900:CDS
GGGACGATGTTCTTACTGGA+AGG 0.612837 1_3:+13109768 Msa0104900:CDS
ATGGCTATTGGAAGACGTGA+AGG 0.614015 1_3:+13110859 Msa0104900:CDS
ATGTAACAACAAAATCTCCA+AGG 0.614207 1_3:+13111109 Msa0104900:CDS
GCATATTCTACGGCTGCTGG+AGG 0.614349 1_3:+13112815 Msa0104900:CDS
AGGCATTAAATAATTCTGAA+GGG 0.616351 1_3:-13109906 None:intergenic
GTCCCTGCCTTTGTTCACAA+GGG 0.619714 1_3:-13109750 None:intergenic
ATTTGATATCCTCAATGAGG+TGG 0.621324 1_3:+13112520 Msa0104900:CDS
GTAAAGGTAAAGCAATTCCA+GGG 0.621381 1_3:+13112492 Msa0104900:CDS
TAATCTCTGCGTCAAGAAAG+GGG 0.622731 1_3:-13109805 None:intergenic
GCTTGAAAATGGAACAGTCA+AGG 0.623908 1_3:+13111131 Msa0104900:CDS
ATCCCTTGTGAACAAAGGCA+GGG 0.631490 1_3:+13109748 Msa0104900:CDS
GATCAACAACCACCTCATTG+AGG 0.631885 1_3:-13112529 None:intergenic
ATGGTATCCCTTGTGAACAA+AGG 0.632008 1_3:+13109743 Msa0104900:CDS
AAGGTTAAATGACACAATAG+GGG 0.632745 1_3:-13111988 None:intergenic
GGATCTTTAGGAACTCCGAA+AGG 0.635393 1_3:+13109597 Msa0104900:CDS
TACCGGAGAGTCAAGCCCGA+AGG 0.636841 1_3:-13107546 None:intergenic
TCAGAAAACCAAGGGAACCA+AGG 0.637128 1_3:-13112007 None:intergenic
GGGTGATATTGCTGAAGTCG+AGG 0.638757 1_3:+13109565 Msa0104900:CDS
CTGCTATGGTGTCTAGATGG+AGG 0.639306 1_3:+13110386 Msa0104900:CDS
ATGAGAAGTCAGAAAACCAA+GGG 0.643195 1_3:-13112015 None:intergenic
ATCGGAGCTTAAATGTATGG+AGG 0.646616 1_3:+13109936 Msa0104900:CDS
TTGTACTAGAGAAAAGGTCA+CGG 0.651293 1_3:+13111284 Msa0104900:CDS
ATGTGATAACATGTTAGAGG+GGG 0.656764 1_3:-13110458 None:intergenic
AATGTGATAACATGTTAGAG+GGG 0.659803 1_3:-13110459 None:intergenic
TTCATCGCGTAAAGCTAACC+CGG 0.661753 1_3:-13111154 None:intergenic
ATAGCCATGTCCTTAAATTG+CGG 0.663244 1_3:-13110844 None:intergenic
GTGCAGTCATAACTTCAACT+GGG 0.663724 1_3:-13110267 None:intergenic
AGTATTTGATATCCTCAATG+AGG 0.664737 1_3:+13112517 Msa0104900:CDS
TCGACTTCAGCAATATCACC+CGG 0.665510 1_3:-13109563 None:intergenic
GAATATGCAGTACTTCCCGT+AGG 0.667616 1_3:-13112800 None:intergenic
TATGAGAAGTCAGAAAACCA+AGG 0.675077 1_3:-13112016 None:intergenic
TGATAATTGACATAATCGGG+AGG 0.681483 1_3:-13110799 None:intergenic
TGGAAGACGTGAAGGAGATG+TGG 0.685338 1_3:+13110867 Msa0104900:CDS
CACCAATTAGCAAATAGTGT+AGG 0.686349 1_3:-13110025 None:intergenic
ATAGGGGTAAACAATATGCA+CGG 0.689744 1_3:-13113825 None:intergenic
AGTAAACGGATCAAGTCAAG+GGG 0.695048 1_3:+13111032 Msa0104900:CDS
AATGGTAGCATGTATCGACA+TGG 0.696077 1_3:+13107337 Msa0104900:exon
AGGTTAAATGACACAATAGG+GGG 0.696511 1_3:-13111987 None:intergenic
AAGTATGATGAGAAAACACA+AGG 0.702953 1_3:+13110625 Msa0104900:CDS
CAGGGATAACCCTCACCACG+AGG 0.704430 1_3:-13110001 None:intergenic
TTAGCAAATAGTGTAGGACA+GGG 0.706605 1_3:-13110019 None:intergenic
ATTATGCAATCCGTTGACTG+GGG 0.726680 1_3:+13109643 Msa0104900:CDS
TAACAGAAGAAGGACTAACG+TGG 0.741335 1_3:+13110125 Msa0104900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTCACAA+CGG - chr1_3:13111091-13111110 None:intergenic 10.0%
!!! ATTTTATCATACAATAATAT+CGG + chr1_3:13112313-13112332 Msa0104900:intron 10.0%
!!! TTTGGGATAATAATAAATTT+TGG - chr1_3:13107201-13107220 None:intergenic 15.0%
!! AATGAAAATGAAAAAAGTTT+GGG - chr1_3:13107218-13107237 None:intergenic 15.0%
!! TAATGAAAATGAAAAAAGTT+TGG - chr1_3:13107219-13107238 None:intergenic 15.0%
!!! TTAAAAATTTAGAATAGACA+TGG + chr1_3:13111456-13111475 Msa0104900:intron 15.0%
!!! ATTTTAAGCTATATTATATC+AGG + chr1_3:13112064-13112083 Msa0104900:intron 15.0%
!! GAAATATTAAATTTAGTTAG+AGG - chr1_3:13112092-13112111 None:intergenic 15.0%
!! CTAAATTTAATATTTCAAAC+AGG + chr1_3:13112096-13112115 Msa0104900:intron 15.0%
!!! AAATATTAGATTTATTTTCC+TGG + chr1_3:13112878-13112897 Msa0104900:intron 15.0%
!!! GGAAAATTAAAATTTTGTTT+GGG - chr1_3:13113236-13113255 None:intergenic 15.0%
!!! TGGAAAATTAAAATTTTGTT+TGG - chr1_3:13113237-13113256 None:intergenic 15.0%
!! TTAGCATAATAAAATTATAC+TGG + chr1_3:13113546-13113565 Msa0104900:intron 15.0%
!!! ATAATAATAAATTTTGGTGG+TGG - chr1_3:13107195-13107214 None:intergenic 20.0%
!! TCCTATTTAATTATTTCAAG+TGG - chr1_3:13107685-13107704 None:intergenic 20.0%
!! TATTAATTTCCTTAACAAGA+GGG - chr1_3:13107776-13107795 None:intergenic 20.0%
!! TTATTAATTTCCTTAACAAG+AGG - chr1_3:13107777-13107796 None:intergenic 20.0%
!!! TATGAAATGAAATTTTTAGC+TGG + chr1_3:13107814-13107833 Msa0104900:intron 20.0%
!! ATATGATTCAGATAGATAAT+TGG + chr1_3:13108277-13108296 Msa0104900:intron 20.0%
!!! TTCTTTGAATTCCATTTTTT+TGG + chr1_3:13108936-13108955 Msa0104900:intron 20.0%
!! AAATACGGAAATTCATTTAA+GGG - chr1_3:13109382-13109401 None:intergenic 20.0%
!! AAAATACGGAAATTCATTTA+AGG - chr1_3:13109383-13109402 None:intergenic 20.0%
!!! AGGAATTCAAATTCTAAAAA+TGG - chr1_3:13109499-13109518 None:intergenic 20.0%
!! TTAGAAGAAGAAAAATATAC+AGG - chr1_3:13110052-13110071 None:intergenic 20.0%
!!! ATTTGATAATTGACATAATC+GGG - chr1_3:13110805-13110824 None:intergenic 20.0%
!!! GATTTGATAATTGACATAAT+CGG - chr1_3:13110806-13110825 None:intergenic 20.0%
!! ATGTCAATTATCAAATCAAA+AGG + chr1_3:13110809-13110828 Msa0104900:CDS 20.0%
!! TGTCAATTATCAAATCAAAA+GGG + chr1_3:13110810-13110829 Msa0104900:CDS 20.0%
!!! ATAATTTTCTTTGACTCTAA+TGG + chr1_3:13111432-13111451 Msa0104900:intron 20.0%
!! TGACACCAAAAAAAATATAA+AGG - chr1_3:13112123-13112142 None:intergenic 20.0%
!!! ATTGACGTTTTTAAACATAA+AGG - chr1_3:13112153-13112172 None:intergenic 20.0%
!! ATTGTTACCAAATTATTTCA+AGG - chr1_3:13112912-13112931 None:intergenic 20.0%
!!! ATTGACTTTGAATTTGTTTT+GGG - chr1_3:13113297-13113316 None:intergenic 20.0%
!!! TATTGACTTTGAATTTGTTT+TGG - chr1_3:13113298-13113317 None:intergenic 20.0%
!!! AATTTTAGTGTAAGAAACAT+CGG - chr1_3:13113680-13113699 None:intergenic 20.0%
!! GGGATAATAATAAATTTTGG+TGG - chr1_3:13107198-13107217 None:intergenic 25.0%
! CGATAATAACATAACATACT+AGG - chr1_3:13107603-13107622 None:intergenic 25.0%
! GCCACTTGAAATAATTAAAT+AGG + chr1_3:13107681-13107700 Msa0104900:intron 25.0%
! TAATTAAATAGGACACTTTG+CGG + chr1_3:13107692-13107711 Msa0104900:intron 25.0%
! AAAATCACCTATGTTATGTT+AGG + chr1_3:13107871-13107890 Msa0104900:intron 25.0%
! TGATTCAGATAGATGATAAT+TGG + chr1_3:13108327-13108346 Msa0104900:intron 25.0%
! AGCTTAAATTGGTATTAGAT+TGG - chr1_3:13108478-13108497 None:intergenic 25.0%
!! TACTTTAAGCTAGCTTAAAT+TGG - chr1_3:13108489-13108508 None:intergenic 25.0%
! CATTTATTCATCGAATAACT+CGG + chr1_3:13108525-13108544 Msa0104900:intron 25.0%
! ATTTATTCATCGAATAACTC+GGG + chr1_3:13108526-13108545 Msa0104900:intron 25.0%
! GAAATTGTTTGAAGATTGAT+TGG - chr1_3:13108571-13108590 None:intergenic 25.0%
! ACTCTAATACCATGTTAAAT+GGG + chr1_3:13108655-13108674 Msa0104900:intron 25.0%
!! CATCCTTTGAATTATCTTTT+GGG - chr1_3:13108693-13108712 None:intergenic 25.0%
!! TCATCCTTTGAATTATCTTT+TGG - chr1_3:13108694-13108713 None:intergenic 25.0%
! AAAAGATAATTCAAAGGATG+AGG + chr1_3:13108693-13108712 Msa0104900:intron 25.0%
! AAAGATAATTCAAAGGATGA+GGG + chr1_3:13108694-13108713 Msa0104900:intron 25.0%
!!! TTTTGGTGTATAAATGTGTT+CGG - chr1_3:13108723-13108742 None:intergenic 25.0%
! ATTTATACACCAAAAAACCT+GGG + chr1_3:13108728-13108747 Msa0104900:intron 25.0%
!! ATTTTGTCAAAATTGCAATG+TGG + chr1_3:13108801-13108820 Msa0104900:intron 25.0%
! AAGTTCACATTCCAAAAAAA+TGG - chr1_3:13108950-13108969 None:intergenic 25.0%
! ATGCAAAACAGCTAATAAAA+TGG - chr1_3:13109011-13109030 None:intergenic 25.0%
!! GTTTTGCATTATGATTTAGT+TGG + chr1_3:13109022-13109041 Msa0104900:intron 25.0%
!!! ACTATTTTATCTTCAAGTTG+AGG - chr1_3:13109707-13109726 None:intergenic 25.0%
! GATAAAATAGTTTCTGTTCT+TGG + chr1_3:13109716-13109735 Msa0104900:CDS 25.0%
! AGGCATTAAATAATTCTGAA+GGG - chr1_3:13109909-13109928 None:intergenic 25.0%
!! AGAAGTAATATCCTTTTTGA+GGG - chr1_3:13110539-13110558 None:intergenic 25.0%
!! ATTTTCTTGTACTAGAGAAA+AGG + chr1_3:13111278-13111297 Msa0104900:CDS 25.0%
! AGTTTCTGTAGTTAATGTAT+AGG + chr1_3:13111485-13111504 Msa0104900:intron 25.0%
! TATAGAAACTGGATTAAGAA+TGG - chr1_3:13111657-13111676 None:intergenic 25.0%
!!! CAGGTCCTTTATATTTTTTT+TGG + chr1_3:13112115-13112134 Msa0104900:intron 25.0%
! AAATAAAGACAACTACATCA+GGG - chr1_3:13112297-13112316 None:intergenic 25.0%
! AAAATAAAGACAACTACATC+AGG - chr1_3:13112298-13112317 None:intergenic 25.0%
! CTTTACGAAAAATTTCACAT+CGG - chr1_3:13112478-13112497 None:intergenic 25.0%
! TGATAAATTTCAGTCATTGT+TGG + chr1_3:13112934-13112953 Msa0104900:intron 25.0%
! AAAATAAGTGAAAGAACACA+TGG - chr1_3:13113189-13113208 None:intergenic 25.0%
! ATTATGCTAAGTTTCTAACT+AGG - chr1_3:13113536-13113555 None:intergenic 25.0%
AGAAGAAGTTGAATGAACTA+CGG - chr1_3:13107369-13107388 None:intergenic 30.0%
! AATCTATTGTTGGTGAAGAA+TGG - chr1_3:13107419-13107438 None:intergenic 30.0%
!! AAGTCATTTTCATTCACCTT+CGG + chr1_3:13107530-13107549 Msa0104900:CDS 30.0%
! ATAAGTATAAGAGAGTGTAC+CGG - chr1_3:13107566-13107585 None:intergenic 30.0%
ATTATACTTCCCTCTTGTTA+AGG + chr1_3:13107764-13107783 Msa0104900:intron 30.0%
AGACTAGACAAGATAAGATT+AGG + chr1_3:13108061-13108080 Msa0104900:intron 30.0%
ACACAATTAGAGAGAAAGTT+CGG + chr1_3:13108088-13108107 Msa0104900:intron 30.0%
TAGAAAAGATGATAGAAACC+AGG + chr1_3:13108124-13108143 Msa0104900:intron 30.0%
TTTAACATGGTATTAGAGTC+AGG - chr1_3:13108654-13108673 None:intergenic 30.0%
GACTCTAATACCATGTTAAA+TGG + chr1_3:13108654-13108673 Msa0104900:intron 30.0%
CATCCCAAAAGATAATTCAA+AGG + chr1_3:13108687-13108706 Msa0104900:intron 30.0%
! TTTGGTGTATAAATGTGTTC+GGG - chr1_3:13108722-13108741 None:intergenic 30.0%
CATTTATACACCAAAAAACC+TGG + chr1_3:13108727-13108746 Msa0104900:intron 30.0%
TCTTAATCATGTTTGCACAT+AGG + chr1_3:13108868-13108887 Msa0104900:intron 30.0%
CATGCTATTAGAGATTCATT+TGG + chr1_3:13108984-13109003 Msa0104900:intron 30.0%
TTGCTGGATAATTCTAAACT+TGG + chr1_3:13109047-13109066 Msa0104900:intron 30.0%
TTGTATGTGTTCTTCAACTT+AGG + chr1_3:13109110-13109129 Msa0104900:intron 30.0%
! GCTCTTTTCATAAGCTATTT+TGG + chr1_3:13109245-13109264 Msa0104900:intron 30.0%
AACTCTTGAACTTAATGTCA+TGG + chr1_3:13109437-13109456 Msa0104900:intron 30.0%
!! ATTTTGATAGATCATGGGAT+TGG - chr1_3:13109523-13109542 None:intergenic 30.0%
!! GGACAATTTTGATAGATCAT+GGG - chr1_3:13109528-13109547 None:intergenic 30.0%
!! AGGACAATTTTGATAGATCA+TGG - chr1_3:13109529-13109548 None:intergenic 30.0%
ATGATCTATCAAAATTGTCC+TGG + chr1_3:13109528-13109547 Msa0104900:CDS 30.0%
CAGGCATTAAATAATTCTGA+AGG - chr1_3:13109910-13109929 None:intergenic 30.0%
! ATTTAATGCCTGATGATGAT+CGG + chr1_3:13109918-13109937 Msa0104900:CDS 30.0%
! TTCTTCTTCTAAAGAAGACA+CGG + chr1_3:13110060-13110079 Msa0104900:CDS 30.0%
! AAGAATTAGAAACGGCTTTT+TGG + chr1_3:13110089-13110108 Msa0104900:CDS 30.0%
AAGAGACAATTTCTATCAAG+CGG + chr1_3:13110198-13110217 Msa0104900:CDS 30.0%
AATGTGATAACATGTTAGAG+GGG - chr1_3:13110462-13110481 None:intergenic 30.0%
GAATGTGATAACATGTTAGA+GGG - chr1_3:13110463-13110482 None:intergenic 30.0%
AGAATGTGATAACATGTTAG+AGG - chr1_3:13110464-13110483 None:intergenic 30.0%
! CAGAAGTAATATCCTTTTTG+AGG - chr1_3:13110540-13110559 None:intergenic 30.0%
AAGTATGATGAGAAAACACA+AGG + chr1_3:13110625-13110644 Msa0104900:CDS 30.0%
ATCAGGAGAAATTCCATTTA+AGG - chr1_3:13110659-13110678 None:intergenic 30.0%
AAATGGAATTTCTCCTGATA+AGG + chr1_3:13110660-13110679 Msa0104900:CDS 30.0%
TTAATCTTGCTGGAAAAACT+TGG - chr1_3:13110697-13110716 None:intergenic 30.0%
!! TTTTAAAGGGTTAATCTTGC+TGG - chr1_3:13110707-13110726 None:intergenic 30.0%
!!! GCTTTTTTGGAAAAGATATC+CGG - chr1_3:13110745-13110764 None:intergenic 30.0%
GAAATTCTTACCGCAATTTA+AGG + chr1_3:13110834-13110853 Msa0104900:CDS 30.0%
ACAATCAAAAGTCTGTGAAT+GGG + chr1_3:13110983-13111002 Msa0104900:CDS 30.0%
ATGTAACAACAAAATCTCCA+AGG + chr1_3:13111109-13111128 Msa0104900:CDS 30.0%
TTTAACAACAGCACATTCTT+TGG - chr1_3:13111372-13111391 None:intergenic 30.0%
TGCTGTTGTTAAAAAAGCTT+GGG + chr1_3:13111379-13111398 Msa0104900:CDS 30.0%
ACTATTGGAAGAAGCAAAAA+TGG + chr1_3:13111407-13111426 Msa0104900:CDS 30.0%
TGCAGATTAGATATAGAAAC+TGG - chr1_3:13111668-13111687 None:intergenic 30.0%
AGTTTCTATATCTAATCTGC+AGG + chr1_3:13111667-13111686 Msa0104900:intron 30.0%
CAATAACATTCATTCTCTCT+TGG - chr1_3:13111712-13111731 None:intergenic 30.0%
AGAGAGAATGAATGTTATTG+TGG + chr1_3:13111712-13111731 Msa0104900:CDS 30.0%
AAGGTTAAATGACACAATAG+GGG - chr1_3:13111991-13112010 None:intergenic 30.0%
CAAGGTTAAATGACACAATA+GGG - chr1_3:13111992-13112011 None:intergenic 30.0%
!!! TGGAAGCAACTTTCATTTTT+TGG - chr1_3:13112185-13112204 None:intergenic 30.0%
AAAAATGAAAGTTGCTTCCA+CGG + chr1_3:13112185-13112204 Msa0104900:intron 30.0%
AATAAAGACAACTACATCAG+GGG - chr1_3:13112296-13112315 None:intergenic 30.0%
! CGATGTGAAATTTTTCGTAA+AGG + chr1_3:13112476-13112495 Msa0104900:CDS 30.0%
AGTATTTGATATCCTCAATG+AGG + chr1_3:13112517-13112536 Msa0104900:CDS 30.0%
! CATTCAATCTTTGAAAGGTA+TGG - chr1_3:13112566-13112585 None:intergenic 30.0%
CATAGCATTCAATCTTTGAA+AGG - chr1_3:13112571-13112590 None:intergenic 30.0%
CATGACATCTATCATATAGA+AGG - chr1_3:13112742-13112761 None:intergenic 30.0%
ATCCATGCCTTGAAATAATT+TGG + chr1_3:13112902-13112921 Msa0104900:intron 30.0%
TACCAAATTATTTCAAGGCA+TGG - chr1_3:13112907-13112926 None:intergenic 30.0%
AGCATCATAAACACTTCTTT+AGG + chr1_3:13113077-13113096 Msa0104900:intron 30.0%
!!! AAACCCTTGTTTTTGATACA+AGG - chr1_3:13113119-13113138 None:intergenic 30.0%
!! AAATTTTGTTTGGGATGACA+TGG - chr1_3:13113227-13113246 None:intergenic 30.0%
CACATGTTCTTGATGTTTAT+GGG - chr1_3:13113344-13113363 None:intergenic 30.0%
TCACATGTTCTTGATGTTTA+TGG - chr1_3:13113345-13113364 None:intergenic 30.0%
AACATCAAGAACATGTGATA+CGG + chr1_3:13113347-13113366 Msa0104900:intron 30.0%
GTCTTTAATAACATGCTAGA+CGG - chr1_3:13113444-13113463 None:intergenic 30.0%
AAACAAACTAGAGTAGACTA+GGG + chr1_3:13113464-13113483 Msa0104900:intron 30.0%
TCATGCGTTCATTAATATCA+AGG - chr1_3:13113715-13113734 None:intergenic 30.0%
GTCATTAGATAATAGCATCT+AGG - chr1_3:13113775-13113794 None:intergenic 30.0%
TAATGACAAAAGAAAACTGC+AGG + chr1_3:13113788-13113807 Msa0104900:CDS 30.0%
TTCTGCTCGATTAGAATTAA+AGG + chr1_3:13113890-13113909 Msa0104900:CDS 30.0%
GATCGTTGAACTAACACAAA+TGG + chr1_3:13107319-13107338 Msa0104900:exon 35.0%
TTCACCAACAATAGATTCCT+AGG + chr1_3:13107422-13107441 Msa0104900:CDS 35.0%
AACAATAGATTCCTAGGCTT+GGG + chr1_3:13107428-13107447 Msa0104900:CDS 35.0%
AGTATCAAAGGAAAGGAAGA+AGG + chr1_3:13107462-13107481 Msa0104900:CDS 35.0%
GAAGGTGAATGAAAATGACT+TGG - chr1_3:13107531-13107550 None:intergenic 35.0%
!! AGTCATTTTCATTCACCTTC+GGG + chr1_3:13107531-13107550 Msa0104900:CDS 35.0%
GTTCTGTCCTAACATAACAT+AGG - chr1_3:13107881-13107900 None:intergenic 35.0%
GTTATGTTAGGACAGAACTT+AGG + chr1_3:13107883-13107902 Msa0104900:intron 35.0%
CACAATTAGAGAGAAAGTTC+GGG + chr1_3:13108089-13108108 Msa0104900:intron 35.0%
AAGGATTGTAATGTGGGAAT+TGG - chr1_3:13108629-13108648 None:intergenic 35.0%
CAGGTTAAGGATTGTAATGT+GGG - chr1_3:13108635-13108654 None:intergenic 35.0%
TCAGGTTAAGGATTGTAATG+TGG - chr1_3:13108636-13108655 None:intergenic 35.0%
ATGGTATTAGAGTCAGGTTA+AGG - chr1_3:13108648-13108667 None:intergenic 35.0%
AGATTCTAGCCCATTTAACA+TGG - chr1_3:13108667-13108686 None:intergenic 35.0%
!! GTTTCTCAAGACTTGTTGTT+GGG + chr1_3:13108823-13108842 Msa0104900:intron 35.0%
CTAATAGCATGCATCAAGAT+TGG - chr1_3:13108975-13108994 None:intergenic 35.0%
TATGATTTAGTTGGCATTGC+TGG + chr1_3:13109031-13109050 Msa0104900:intron 35.0%
ATAAGTTGTTTGCCCAAGTA+GGG - chr1_3:13109136-13109155 None:intergenic 35.0%
AATAAGTTGTTTGCCCAAGT+AGG - chr1_3:13109137-13109156 None:intergenic 35.0%
AAGCTCAAATAAGTCAATCC+CGG + chr1_3:13109356-13109375 Msa0104900:intron 35.0%
ATCTATCAAAATTGTCCTGG+AGG + chr1_3:13109531-13109550 Msa0104900:CDS 35.0%
TCTATCAAAATTGTCCTGGA+GGG + chr1_3:13109532-13109551 Msa0104900:CDS 35.0%
AGGCATATTGTAGGATCTTT+AGG + chr1_3:13109585-13109604 Msa0104900:CDS 35.0%
TAATGCAGAATGAAGCCTTT+CGG - chr1_3:13109615-13109634 None:intergenic 35.0%
AAGGCTTCATTCTGCATTAA+TGG + chr1_3:13109616-13109635 Msa0104900:CDS 35.0%
AAGAAAGGGGTTCATAATTG+AGG - chr1_3:13109795-13109814 None:intergenic 35.0%
! TTTCATCTCGCTTCTGAAAA+CGG - chr1_3:13109861-13109880 None:intergenic 35.0%
! TTTTCAGAAGCGAGATGAAA+AGG + chr1_3:13109861-13109880 Msa0104900:CDS 35.0%
ATGATCGGAGCTTAAATGTA+TGG + chr1_3:13109933-13109952 Msa0104900:CDS 35.0%
AAGAATGTCTGCTATGATTC+TGG + chr1_3:13109974-13109993 Msa0104900:CDS 35.0%
TTAGCAAATAGTGTAGGACA+GGG - chr1_3:13110022-13110041 None:intergenic 35.0%
ATTAGCAAATAGTGTAGGAC+AGG - chr1_3:13110023-13110042 None:intergenic 35.0%
! GTCCTACACTATTTGCTAAT+TGG + chr1_3:13110023-13110042 Msa0104900:CDS 35.0%
CACCAATTAGCAAATAGTGT+AGG - chr1_3:13110028-13110047 None:intergenic 35.0%
GGAGTCTGAAGAATTAGAAA+CGG + chr1_3:13110081-13110100 Msa0104900:CDS 35.0%
CTAACGTGGTTACTAGATAA+AGG + chr1_3:13110139-13110158 Msa0104900:CDS 35.0%
GAAATTGTCTCTTACAGTCT+CGG - chr1_3:13110191-13110210 None:intergenic 35.0%
AGATGAAATAGCATCGTTCA+CGG - chr1_3:13110224-13110243 None:intergenic 35.0%
ATGTTACAGATAGCAGCAAA+AGG + chr1_3:13110323-13110342 Msa0104900:CDS 35.0%
! TCCTTGCTATGAAGATAGAT+AGG - chr1_3:13110349-13110368 None:intergenic 35.0%
ATCTATCTTCATAGCAAGGA+AGG + chr1_3:13110349-13110368 Msa0104900:CDS 35.0%
ATGTGATAACATGTTAGAGG+GGG - chr1_3:13110461-13110480 None:intergenic 35.0%
!! AGTAATATCCTTTTTGAGGG+AGG - chr1_3:13110536-13110555 None:intergenic 35.0%
! GATTAACCCTTTAAAAGCTC+AGG + chr1_3:13110711-13110730 Msa0104900:CDS 35.0%
!! TTTTTGGAAAAGATATCCGG+AGG - chr1_3:13110742-13110761 None:intergenic 35.0%
!!! AAATGTGGACATCGCTTTTT+TGG - chr1_3:13110758-13110777 None:intergenic 35.0%
! AAAAGCGATGTCCACATTTT+TGG + chr1_3:13110759-13110778 Msa0104900:CDS 35.0%
! AAAGCGATGTCCACATTTTT+GGG + chr1_3:13110760-13110779 Msa0104900:CDS 35.0%
TGATAATTGACATAATCGGG+AGG - chr1_3:13110802-13110821 None:intergenic 35.0%
ATAGCCATGTCCTTAAATTG+CGG - chr1_3:13110847-13110866 None:intergenic 35.0%
CAATTTAAGGACATGGCTAT+TGG + chr1_3:13110847-13110866 Msa0104900:CDS 35.0%
TGTTTCCAATGGTACTATTG+TGG + chr1_3:13110891-13110910 Msa0104900:CDS 35.0%
GTTTCCAATGGTACTATTGT+GGG + chr1_3:13110892-13110911 Msa0104900:CDS 35.0%
GCTGATCCATTTAAACTATC+AGG - chr1_3:13110919-13110938 None:intergenic 35.0%
TAGTTTAAATGGATCAGCTC+AGG + chr1_3:13110921-13110940 Msa0104900:CDS 35.0%
ATTGTCATCGACCGTAATTT+CGG - chr1_3:13110968-13110987 None:intergenic 35.0%
GACAATCAAAAGTCTGTGAA+TGG + chr1_3:13110982-13111001 Msa0104900:CDS 35.0%
TCTAGTAGGACAACAGTAAA+CGG + chr1_3:13111018-13111037 Msa0104900:CDS 35.0%
TCAAGGGGAATTACATTACA+TGG + chr1_3:13111047-13111066 Msa0104900:CDS 35.0%
AAATCTCCAAGGCTTGAAAA+TGG + chr1_3:13111120-13111139 Msa0104900:CDS 35.0%
AAAGAAAGCTGAGATGTTCT+TGG + chr1_3:13111242-13111261 Msa0104900:CDS 35.0%
TTGTACTAGAGAAAAGGTCA+CGG + chr1_3:13111284-13111303 Msa0104900:CDS 35.0%
! GTGCTGTTGTTAAAAAAGCT+TGG + chr1_3:13111378-13111397 Msa0104900:CDS 35.0%
GCTGTTGTTAAAAAAGCTTG+GGG + chr1_3:13111380-13111399 Msa0104900:CDS 35.0%
AAATCCAAAACCTGGAATTC+TGG - chr1_3:13111762-13111781 None:intergenic 35.0%
CCTTGTATCATGACTGTAAA+AGG - chr1_3:13111792-13111811 None:intergenic 35.0%
! CCTTTTACAGTCATGATACA+AGG + chr1_3:13111789-13111808 Msa0104900:CDS 35.0%
CCACAAAATCTACTTTCTCA+TGG - chr1_3:13111908-13111927 None:intergenic 35.0%
! CCATGAGAAAGTAGATTTTG+TGG + chr1_3:13111905-13111924 Msa0104900:CDS 35.0%
AGGTTAAATGACACAATAGG+GGG - chr1_3:13111990-13112009 None:intergenic 35.0%
CCAAGGTTAAATGACACAAT+AGG - chr1_3:13111993-13112012 None:intergenic 35.0%
!! CCTATTGTGTCATTTAACCT+TGG + chr1_3:13111990-13112009 Msa0104900:CDS 35.0%
ATGAGAAGTCAGAAAACCAA+GGG - chr1_3:13112018-13112037 None:intergenic 35.0%
TATGAGAAGTCAGAAAACCA+AGG - chr1_3:13112019-13112038 None:intergenic 35.0%
GACTTAAGACAAGTCATTCA+CGG + chr1_3:13112407-13112426 Msa0104900:CDS 35.0%
ATGGTGTCTACATTACTCTT+AGG + chr1_3:13112444-13112463 Msa0104900:CDS 35.0%
GTAAAGGTAAAGCAATTCCA+GGG + chr1_3:13112492-13112511 Msa0104900:CDS 35.0%
AGGATATCAAATACTTTCCC+TGG - chr1_3:13112512-13112531 None:intergenic 35.0%
ATTTGATATCCTCAATGAGG+TGG + chr1_3:13112520-13112539 Msa0104900:CDS 35.0%
TGACACTCACTTTGGTTATA+AGG - chr1_3:13112604-13112623 None:intergenic 35.0%
ACATAAAGTGACACTCACTT+TGG - chr1_3:13112612-13112631 None:intergenic 35.0%
TGATAGATGTCATGTCTTTC+AGG + chr1_3:13112748-13112767 Msa0104900:intron 35.0%
TGCACCTTGTATCAAAAACA+AGG + chr1_3:13113112-13113131 Msa0104900:intron 35.0%
GCACCTTGTATCAAAAACAA+GGG + chr1_3:13113113-13113132 Msa0104900:intron 35.0%
TTGATGTTTATGGGCATATG+TGG - chr1_3:13113335-13113354 None:intergenic 35.0%
ACATCAAGAACATGTGATAC+GGG + chr1_3:13113348-13113367 Msa0104900:intron 35.0%
CAAACAAACTAGAGTAGACT+AGG + chr1_3:13113463-13113482 Msa0104900:intron 35.0%
!! GCATTGATTCAAATGCATGT+AGG - chr1_3:13113503-13113522 None:intergenic 35.0%
GCGTTCATTAATATCAAGGA+AGG - chr1_3:13113711-13113730 None:intergenic 35.0%
ATAGGGGTAAACAATATGCA+CGG - chr1_3:13113828-13113847 None:intergenic 35.0%
AATTCTAATCGAGCAGAATC+TGG - chr1_3:13113888-13113907 None:intergenic 35.0%
! AATGGTAGCATGTATCGACA+TGG + chr1_3:13107337-13107356 Msa0104900:exon 40.0%
GAAGAGTTGGAGAACAAACA+TGG - chr1_3:13107395-13107414 None:intergenic 40.0%
CAAGCCTAGGAATCTATTGT+TGG - chr1_3:13107429-13107448 None:intergenic 40.0%
CAACAATAGATTCCTAGGCT+TGG + chr1_3:13107427-13107446 Msa0104900:CDS 40.0%
!! GGCTTTGAGTATCAAAGGAA+AGG + chr1_3:13107455-13107474 Msa0104900:CDS 40.0%
GGAAAGGAAGAAGGATACTA+AGG + chr1_3:13107471-13107490 Msa0104900:CDS 40.0%
CGAGAATCAAGTAAGCGTAA+CGG + chr1_3:13108008-13108027 Msa0104900:intron 40.0%
AGATGATAGAAACCAGGCTT+AGG + chr1_3:13108130-13108149 Msa0104900:intron 40.0%
!! GGTTTCTCAAGACTTGTTGT+TGG + chr1_3:13108822-13108841 Msa0104900:intron 40.0%
GGGTAACTCTCATAGTAGTA+TGG + chr1_3:13108843-13108862 Msa0104900:intron 40.0%
! GTTTTCTTCTCTGCGCATTT+TGG + chr1_3:13108901-13108920 Msa0104900:intron 40.0%
TAAGCGCTTGTGACACTATT+TGG - chr1_3:13109325-13109344 None:intergenic 40.0%
ACGGAAATTCATTTAAGGGC+CGG - chr1_3:13109378-13109397 None:intergenic 40.0%
TGATAGATCATGGGATTGGA+AGG - chr1_3:13109519-13109538 None:intergenic 40.0%
CTATCAAAATTGTCCTGGAG+GGG + chr1_3:13109533-13109552 Msa0104900:CDS 40.0%
! CATTATGCAATCCGTTGACT+GGG + chr1_3:13109642-13109661 Msa0104900:CDS 40.0%
! ATTATGCAATCCGTTGACTG+GGG + chr1_3:13109643-13109662 Msa0104900:CDS 40.0%
AGTTTCTGTTCTTGGATGCA+TGG + chr1_3:13109724-13109743 Msa0104900:CDS 40.0%
ATGGTATCCCTTGTGAACAA+AGG + chr1_3:13109743-13109762 Msa0104900:CDS 40.0%
TAATCTCTGCGTCAAGAAAG+GGG - chr1_3:13109808-13109827 None:intergenic 40.0%
CTAATCTCTGCGTCAAGAAA+GGG - chr1_3:13109809-13109828 None:intergenic 40.0%
AAGGGCAACATGTAAACTCT+CGG - chr1_3:13109891-13109910 None:intergenic 40.0%
TTTAAGCTCCGATCATCATC+AGG - chr1_3:13109929-13109948 None:intergenic 40.0%
ATCGGAGCTTAAATGTATGG+AGG + chr1_3:13109936-13109955 Msa0104900:CDS 40.0%
!!! TATGATTCTGGTTTTCCTCG+TGG + chr1_3:13109986-13110005 Msa0104900:CDS 40.0%
! TTAGAAACGGCTTTTTGGAC+TGG + chr1_3:13110094-13110113 Msa0104900:CDS 40.0%
TAACAGAAGAAGGACTAACG+TGG + chr1_3:13110125-13110144 Msa0104900:CDS 40.0%
!! GTGAACGATGCTATTTCATC+TGG + chr1_3:13110223-13110242 Msa0104900:CDS 40.0%
GTGCAGTCATAACTTCAACT+GGG - chr1_3:13110270-13110289 None:intergenic 40.0%
AGTTATGACTGCACCAACAA+TGG + chr1_3:13110276-13110295 Msa0104900:CDS 40.0%
GCCTATCTATCTTCATAGCA+AGG + chr1_3:13110345-13110364 Msa0104900:CDS 40.0%
TTCATAGCAAGGAAGGAGTT+TGG + chr1_3:13110356-13110375 Msa0104900:CDS 40.0%
AGTTTGGAGATCATCTGCTA+TGG + chr1_3:13110372-13110391 Msa0104900:CDS 40.0%
AACATGTTAGAGGGGGTAAT+TGG - chr1_3:13110454-13110473 None:intergenic 40.0%
! AAATAGCTCTGCAAAACTGC+AGG + chr1_3:13110486-13110505 Msa0104900:CDS 40.0%
AGAAAGATCCTCCCTCAAAA+AGG + chr1_3:13110525-13110544 Msa0104900:CDS 40.0%
! CTTTTCAGAGACACTTCTGT+CGG - chr1_3:13110605-13110624 None:intergenic 40.0%
CAAGGTAATGCAGCCTTAAA+TGG + chr1_3:13110643-13110662 Msa0104900:CDS 40.0%
GGAATTTCTCCTGATAAGGA+AGG + chr1_3:13110664-13110683 Msa0104900:CDS 40.0%
GGAAAAGATCCTTCCTTATC+AGG - chr1_3:13110676-13110695 None:intergenic 40.0%
! GAGGAACCTGAGCTTTTAAA+GGG - chr1_3:13110720-13110739 None:intergenic 40.0%
CTTACCGCAATTTAAGGACA+TGG + chr1_3:13110840-13110859 Msa0104900:CDS 40.0%
GTGGGTCCTGATAGTTTAAA+TGG + chr1_3:13110910-13110929 Msa0104900:CDS 40.0%
TTGTCATCGACCGTAATTTC+GGG - chr1_3:13110967-13110986 None:intergenic 40.0%
!! GGAATGCTTCTAGTTCTAGT+AGG + chr1_3:13111004-13111023 Msa0104900:CDS 40.0%
ACAGTAAACGGATCAAGTCA+AGG + chr1_3:13111030-13111049 Msa0104900:CDS 40.0%
CAGTAAACGGATCAAGTCAA+GGG + chr1_3:13111031-13111050 Msa0104900:CDS 40.0%
AGTAAACGGATCAAGTCAAG+GGG + chr1_3:13111032-13111051 Msa0104900:CDS 40.0%
!! ACTGTTCCATTTTCAAGCCT+TGG - chr1_3:13111129-13111148 None:intergenic 40.0%
GCTTGAAAATGGAACAGTCA+AGG + chr1_3:13111131-13111150 Msa0104900:CDS 40.0%
AAGCTGAGATGTTCTTGGTT+CGG + chr1_3:13111247-13111266 Msa0104900:CDS 40.0%
AAAGGTCACGGAATCTTCTT+TGG + chr1_3:13111296-13111315 Msa0104900:CDS 40.0%
!! TCATTCTCTCTTGGTGATGA+AGG - chr1_3:13111703-13111722 None:intergenic 40.0%
! AGTAGATTTTGTGGCATGCT+TGG + chr1_3:13111914-13111933 Msa0104900:CDS 40.0%
! GTAGATTTTGTGGCATGCTT+GGG + chr1_3:13111915-13111934 Msa0104900:CDS 40.0%
! TAGATTTTGTGGCATGCTTG+GGG + chr1_3:13111916-13111935 Msa0104900:CDS 40.0%
TCATTTAACCTTGGTTCCCT+TGG + chr1_3:13111999-13112018 Msa0104900:CDS 40.0%
CTTCAAAAATGTTCACACCG+TGG - chr1_3:13112205-13112224 None:intergenic 40.0%
TAGTCGTCAAACTACATACG+CGG - chr1_3:13112380-13112399 None:intergenic 40.0%
GTATGTAGTTTGACGACTAC+AGG + chr1_3:13112381-13112400 Msa0104900:intron 40.0%
CGTAAAGGTAAAGCAATTCC+AGG + chr1_3:13112491-13112510 Msa0104900:CDS 40.0%
TCAATGAGGTGGTTGTTGAT+CGG + chr1_3:13112531-13112550 Msa0104900:CDS 40.0%
! TGTCATGTCTTTCAGGTACA+AGG + chr1_3:13112755-13112774 Msa0104900:intron 40.0%
AGTCATTGTTGGAACTCCTA+CGG + chr1_3:13112784-13112803 Msa0104900:CDS 40.0%
!! GGGAAGTACTGCATATTCTA+CGG + chr1_3:13112805-13112824 Msa0104900:CDS 40.0%
AAACTCCTACAAGCTTACCA+TGG - chr1_3:13112843-13112862 None:intergenic 40.0%
TATTTCAAGGCATGGATACC+AGG - chr1_3:13112899-13112918 None:intergenic 40.0%
AGACTCATGGTCAATCATGA+AGG + chr1_3:13113005-13113024 Msa0104900:intron 40.0%
! TGTTTGGGATGACATGGAAT+TGG - chr1_3:13113221-13113240 None:intergenic 40.0%
TAGTCGTCAAATTGATGTGC+TGG - chr1_3:13113257-13113276 None:intergenic 40.0%
AACTAGAGTAGACTAGGGTT+TGG + chr1_3:13113469-13113488 Msa0104900:intron 40.0%
!! CTGGTATTGATGCAAATGAC+TGG + chr1_3:13113565-13113584 Msa0104900:intron 40.0%
AACAATATGCACGGAACGTT+TGG - chr1_3:13113819-13113838 None:intergenic 40.0%
ACAGTGAATGTGGACAGATA+GGG - chr1_3:13113845-13113864 None:intergenic 40.0%
GGTCTAAATGACAGTGAATG+TGG - chr1_3:13113855-13113874 None:intergenic 40.0%
!! GGTGGTGGATTTAACATGTC+AGG - chr1_3:13107180-13107199 None:intergenic 45.0%
GGTGAAGAATGGAGAAGAGT+TGG - chr1_3:13107408-13107427 None:intergenic 45.0%
TCCTTTGATACTCAAAGCCC+AGG - chr1_3:13107454-13107473 None:intergenic 45.0%
CGCTTACTTGATTCTCGTGT+TGG - chr1_3:13108005-13108024 None:intergenic 45.0%
! AAGTAAGCGTAACGGAGATG+AGG + chr1_3:13108016-13108035 Msa0104900:intron 45.0%
TGATAGAAACCAGGCTTAGG+TGG + chr1_3:13108133-13108152 Msa0104900:intron 45.0%
AGTACGAAGAGCAGATCAGA+TGG + chr1_3:13108190-13108209 Msa0104900:intron 45.0%
GTCAGACCAAAAGAGGTAGA+TGG + chr1_3:13108219-13108238 Msa0104900:intron 45.0%
! AGTTCGCCATCTACCTCTTT+TGG - chr1_3:13108228-13108247 None:intergenic 45.0%
ACCCATACTCACATCTATCC+TGG + chr1_3:13108424-13108443 Msa0104900:intron 45.0%
CCCAGGATAGATGTGAGTAT+GGG - chr1_3:13108428-13108447 None:intergenic 45.0%
CCCATACTCACATCTATCCT+GGG + chr1_3:13108425-13108444 Msa0104900:intron 45.0%
TCCCAGGATAGATGTGAGTA+TGG - chr1_3:13108429-13108448 None:intergenic 45.0%
GTGAATTAGACTCATGTCCC+AGG - chr1_3:13108445-13108464 None:intergenic 45.0%
AACTCGGGAACTGAACAATG+TGG + chr1_3:13108541-13108560 Msa0104900:intron 45.0%
ACTCGGGAACTGAACAATGT+GGG + chr1_3:13108542-13108561 Msa0104900:intron 45.0%
ACCAAAAAACCTGGGAACCT+GGG + chr1_3:13108736-13108755 Msa0104900:intron 45.0%
ATTGAAGTCTCACATTGCCC+AGG - chr1_3:13108756-13108775 None:intergenic 45.0%
TCTTCAACTTAGGCCCTACT+TGG + chr1_3:13109120-13109139 Msa0104900:intron 45.0%
CTTCAACTTAGGCCCTACTT+GGG + chr1_3:13109121-13109140 Msa0104900:intron 45.0%
CGGAAATTCATTTAAGGGCC+GGG - chr1_3:13109377-13109396 None:intergenic 45.0%
TCGACTTCAGCAATATCACC+CGG - chr1_3:13109566-13109585 None:intergenic 45.0%
CTGAAGTCGAGGCATATTGT+AGG + chr1_3:13109576-13109595 Msa0104900:CDS 45.0%
! GGATCTTTAGGAACTCCGAA+AGG + chr1_3:13109597-13109616 Msa0104900:CDS 45.0%
GCATTATGCAATCCGTTGAC+TGG + chr1_3:13109641-13109660 Msa0104900:CDS 45.0%
TATCCCTTGTGAACAAAGGC+AGG + chr1_3:13109747-13109766 Msa0104900:CDS 45.0%
ATCCCTTGTGAACAAAGGCA+GGG + chr1_3:13109748-13109767 Msa0104900:CDS 45.0%
GCTAATCTCTGCGTCAAGAA+AGG - chr1_3:13109810-13109829 None:intergenic 45.0%
! TTCTGAAAACGGCAAGTGGA+GGG - chr1_3:13109850-13109869 None:intergenic 45.0%
GGTAGTCAGGTAACAGAAGA+AGG + chr1_3:13110115-13110134 Msa0104900:CDS 45.0%
GGTGCAGTCATAACTTCAAC+TGG - chr1_3:13110271-13110290 None:intergenic 45.0%
CATCTGCTATGGTGTCTAGA+TGG + chr1_3:13110383-13110402 Msa0104900:CDS 45.0%
ATGTTAGAGGGGGTAATTGG+TGG - chr1_3:13110451-13110470 None:intergenic 45.0%
GATGCAACACGCAGTTCTAT+TGG + chr1_3:13110574-13110593 Msa0104900:CDS 45.0%
! GGAGGAACCTGAGCTTTTAA+AGG - chr1_3:13110721-13110740 None:intergenic 45.0%
TTGGAAAAGATATCCGGAGG+AGG - chr1_3:13110739-13110758 None:intergenic 45.0%
!!! TGTCCACATTTTTGGGTAGC+AGG + chr1_3:13110767-13110786 Msa0104900:CDS 45.0%
CTTCCTGCTACCCAAAAATG+TGG - chr1_3:13110773-13110792 None:intergenic 45.0%
ATGGCTATTGGAAGACGTGA+AGG + chr1_3:13110859-13110878 Msa0104900:CDS 45.0%
! GGAGATGTGGTTGTTTCCAA+TGG + chr1_3:13110880-13110899 Msa0104900:CDS 45.0%
AGGACCCACAATAGTACCAT+TGG - chr1_3:13110899-13110918 None:intergenic 45.0%
ATCTGGAGAGCCCGAAATTA+CGG + chr1_3:13110954-13110973 Msa0104900:CDS 45.0%
AGCTTTACGCGATGAAGAGT+TGG + chr1_3:13111161-13111180 Msa0104900:CDS 45.0%
GCTTTACGCGATGAAGAGTT+GGG + chr1_3:13111162-13111181 Msa0104900:CDS 45.0%
!! ATGTTCTTGGTTCGGACAGA+TGG + chr1_3:13111255-13111274 Msa0104900:CDS 45.0%
CTCAGCAACAGATGCTTATG+TGG + chr1_3:13111337-13111356 Msa0104900:CDS 45.0%
AAAGCTTGGGGACGAACTAT+TGG + chr1_3:13111392-13111411 Msa0104900:CDS 45.0%
GCAAGTACATCATGCACATC+AGG - chr1_3:13111740-13111759 None:intergenic 45.0%
GATGTACTTGCCAGAATTCC+AGG + chr1_3:13111749-13111768 Msa0104900:CDS 45.0%
! CTTGCCAGAATTCCAGGTTT+TGG + chr1_3:13111755-13111774 Msa0104900:CDS 45.0%
GTCTGCACAAATCCAAAACC+TGG - chr1_3:13111770-13111789 None:intergenic 45.0%
! AGATTTTGTGGCATGCTTGG+GGG + chr1_3:13111917-13111936 Msa0104900:CDS 45.0%
TCAGAAAACCAAGGGAACCA+AGG - chr1_3:13112010-13112029 None:intergenic 45.0%
CACGGAAATACTTCACGAGA+TGG + chr1_3:13112425-13112444 Msa0104900:CDS 45.0%
GATCAACAACCACCTCATTG+AGG - chr1_3:13112532-13112551 None:intergenic 45.0%
CAATGAGGTGGTTGTTGATC+GGG + chr1_3:13112532-13112551 Msa0104900:CDS 45.0%
AATGAGGTGGTTGTTGATCG+GGG + chr1_3:13112533-13112552 Msa0104900:CDS 45.0%
! GTCTTTCAGGTACAAGGTGA+TGG + chr1_3:13112761-13112780 Msa0104900:intron 45.0%
!! CAAGGTGATGGAGTCATTGT+TGG + chr1_3:13112773-13112792 Msa0104900:CDS 45.0%
GTCATTGTTGGAACTCCTAC+GGG + chr1_3:13112785-13112804 Msa0104900:CDS 45.0%
GAATATGCAGTACTTCCCGT+AGG - chr1_3:13112803-13112822 None:intergenic 45.0%
AGGTTCCATGGTAAGCTTGT+AGG + chr1_3:13112835-13112854 Msa0104900:intron 45.0%
GGCGCTATGAATAAGACTCA+TGG + chr1_3:13112992-13113011 Msa0104900:intron 45.0%
CTCAAAGACCTCTACTTAGC+TGG + chr1_3:13113400-13113419 Msa0104900:intron 45.0%
ATATGCACGGAACGTTTGGA+TGG - chr1_3:13113815-13113834 None:intergenic 45.0%
CAGTGAATGTGGACAGATAG+GGG - chr1_3:13113844-13113863 None:intergenic 45.0%
GACAGTGAATGTGGACAGAT+AGG - chr1_3:13113846-13113865 None:intergenic 45.0%
! GCAGAATCTGGAAGTATGAC+AGG - chr1_3:13113876-13113895 None:intergenic 45.0%
!!! ATTTTATTTATTTTTGTTTA+AGG - chr1_3:13107257-13107276 None:intergenic 5.0%
!! CAAAAAAAATTAAAAAAATA+CGG - chr1_3:13109397-13109416 None:intergenic 5.0%
!! GCCTGGGCTTTGAGTATCAA+AGG + chr1_3:13107450-13107469 Msa0104900:CDS 50.0%
CGGAGATGAGGACATTGCAT+TGG + chr1_3:13108028-13108047 Msa0104900:intron 50.0%
CATGTCAAACCACCTAAGCC+TGG - chr1_3:13108145-13108164 None:intergenic 50.0%
ACGAAGAGCAGATCAGATGG+AGG + chr1_3:13108193-13108212 Msa0104900:intron 50.0%
GAGGAGAGTCAGACCAAAAG+AGG + chr1_3:13108212-13108231 Msa0104900:intron 50.0%
CACCAAAAAACCTGGGAACC+TGG + chr1_3:13108735-13108754 Msa0104900:intron 50.0%
TCAGCAATATCACCCGGAAC+TGG - chr1_3:13109560-13109579 None:intergenic 50.0%
GGGTGATATTGCTGAAGTCG+AGG + chr1_3:13109565-13109584 Msa0104900:CDS 50.0%
ACGCTACATTCCCCAGTCAA+CGG - chr1_3:13109656-13109675 None:intergenic 50.0%
GGAATGTAGCGTCTCGTATG+AGG + chr1_3:13109664-13109683 Msa0104900:CDS 50.0%
GTCCCTGCCTTTGTTCACAA+GGG - chr1_3:13109753-13109772 None:intergenic 50.0%
GGGACGATGTTCTTACTGGA+AGG + chr1_3:13109768-13109787 Msa0104900:CDS 50.0%
CGCAGAGATTAGCGAGATTG+AGG + chr1_3:13109817-13109836 Msa0104900:CDS 50.0%
! CTTCTGAAAACGGCAAGTGG+AGG - chr1_3:13109851-13109870 None:intergenic 50.0%
! TCGCTTCTGAAAACGGCAAG+TGG - chr1_3:13109854-13109873 None:intergenic 50.0%
!!! TTCTGGTTTTCCTCGTGGTG+AGG + chr1_3:13109991-13110010 Msa0104900:CDS 50.0%
!!! TCTGGTTTTCCTCGTGGTGA+GGG + chr1_3:13109992-13110011 Msa0104900:CDS 50.0%
!!! GGCTTTTTGGACTGGTAGTC+AGG + chr1_3:13110102-13110121 Msa0104900:CDS 50.0%
GACTGCACCAACAATGGAAC+AGG + chr1_3:13110282-13110301 Msa0104900:CDS 50.0%
CTCGCAACCTGTTCCATTGT+TGG - chr1_3:13110292-13110311 None:intergenic 50.0%
CAACAATGGAACAGGTTGCG+AGG + chr1_3:13110290-13110309 Msa0104900:CDS 50.0%
CTGCTATGGTGTCTAGATGG+AGG + chr1_3:13110386-13110405 Msa0104900:CDS 50.0%
AAAAGCTCAGGTTCCTCCTC+CGG + chr1_3:13110723-13110742 Msa0104900:CDS 50.0%
TGGAAGACGTGAAGGAGATG+TGG + chr1_3:13110867-13110886 Msa0104900:CDS 50.0%
!! GCTCAGGTTGATCATCCATC+TGG + chr1_3:13110937-13110956 Msa0104900:CDS 50.0%
GTAATTTCGGGCTCTCCAGA+TGG - chr1_3:13110955-13110974 None:intergenic 50.0%
ATTCACAACGGCAGAGACGT+CGG - chr1_3:13111079-13111098 None:intergenic 50.0%
GAAGAGTTGGGATCCCTTGA+AGG + chr1_3:13111174-13111193 Msa0104900:CDS 50.0%
CGCACACATATCGCCTTCAA+GGG - chr1_3:13111190-13111209 None:intergenic 50.0%
ACGCACACATATCGCCTTCA+AGG - chr1_3:13111191-13111210 None:intergenic 50.0%
CGATATGTGTGCGTCGTCAA+CGG + chr1_3:13111197-13111216 Msa0104900:CDS 50.0%
GATATGTGTGCGTCGTCAAC+GGG + chr1_3:13111198-13111217 Msa0104900:CDS 50.0%
GTCGTCAACGGGAGTTGTAA+GGG + chr1_3:13111209-13111228 Msa0104900:CDS 50.0%
AGCATCTGTTGCTGAGTGCT+AGG - chr1_3:13111333-13111352 None:intergenic 50.0%
! GATTTTGTGGCATGCTTGGG+GGG + chr1_3:13111918-13111937 Msa0104900:CDS 50.0%
ACTGCATATTCTACGGCTGC+TGG + chr1_3:13112812-13112831 Msa0104900:CDS 50.0%
! GTCACTTGGTGAGTGACAGT+GGG - chr1_3:13112968-13112987 None:intergenic 50.0%
! AGTCACTTGGTGAGTGACAG+TGG - chr1_3:13112969-13112988 None:intergenic 50.0%
TGTCACTCACCAAGTGACTG+CGG + chr1_3:13112970-13112989 Msa0104900:intron 50.0%
CTTGCACTCCAGCTAAGTAG+AGG - chr1_3:13113411-13113430 None:intergenic 50.0%
TAGATTCCTAGGCTTGGGCC+TGG + chr1_3:13107433-13107452 Msa0104900:CDS 55.0%
AGATTCCTAGGCTTGGGCCT+GGG + chr1_3:13107434-13107453 Msa0104900:CDS 55.0%
!!! GCCCAGGTTCCCAGGTTTTT+TGG - chr1_3:13108740-13108759 None:intergenic 55.0%
CGTCCCTGCCTTTGTTCACA+AGG - chr1_3:13109754-13109773 None:intergenic 55.0%
GGCAGGGACGATGTTCTTAC+TGG + chr1_3:13109764-13109783 Msa0104900:CDS 55.0%
CGTCGTCAACGGGAGTTGTA+AGG + chr1_3:13111208-13111227 Msa0104900:CDS 55.0%
GCATATTCTACGGCTGCTGG+AGG + chr1_3:13112815-13112834 Msa0104900:CDS 55.0%
! ACTTGGTGAGTGACAGTGGG+TGG - chr1_3:13112965-13112984 None:intergenic 55.0%
GTCACTCACCAAGTGACTGC+GGG + chr1_3:13112971-13112990 Msa0104900:intron 55.0%
CACCTTCGGGCTTGACTCTC+CGG + chr1_3:13107544-13107563 Msa0104900:CDS 60.0%
TACCGGAGAGTCAAGCCCGA+AGG - chr1_3:13107549-13107568 None:intergenic 60.0%
ATCCACCCTCACGCCTAGCA+CGG + chr1_3:13108594-13108613 Msa0104900:intron 60.0%
CTCACATTGCCCAGGTTCCC+AGG - chr1_3:13108748-13108767 None:intergenic 60.0%
CAGGGATAACCCTCACCACG+AGG - chr1_3:13110004-13110023 None:intergenic 60.0%
TACGGCTGCTGGAGGTTCCA+TGG + chr1_3:13112823-13112842 Msa0104900:CDS 60.0%
TCATAGCGCCCGCAGTCACT+TGG - chr1_3:13112982-13113001 None:intergenic 60.0%
CAAAGCCCAGGCCCAAGCCT+AGG - chr1_3:13107442-13107461 None:intergenic 65.0%
TCCACCCTCACGCCTAGCAC+GGG + chr1_3:13108595-13108614 Msa0104900:intron 65.0%
ATGCCCCGTGCTAGGCGTGA+GGG - chr1_3:13108602-13108621 None:intergenic 65.0%
TCACGCCTAGCACGGGGCAT+GGG + chr1_3:13108602-13108621 Msa0104900:intron 65.0%
TTGGACCCATGCCCCGTGCT+AGG - chr1_3:13108610-13108629 None:intergenic 65.0%
GTCCTGGAGGGGACCAGTTC+CGG + chr1_3:13109544-13109563 Msa0104900:CDS 65.0%
TCCTGGAGGGGACCAGTTCC+GGG + chr1_3:13109545-13109564 Msa0104900:CDS 65.0%
GTGGCATGCTTGGGGGGTGA+CGG + chr1_3:13111924-13111943 Msa0104900:CDS 65.0%
CCACCCTCACGCCTAGCACG+GGG + chr1_3:13108596-13108615 Msa0104900:intron 70.0%
CATGCCCCGTGCTAGGCGTG+AGG - chr1_3:13108603-13108622 None:intergenic 70.0%
CTCACGCCTAGCACGGGGCA+TGG + chr1_3:13108601-13108620 Msa0104900:intron 70.0%
ACCCGGAACTGGTCCCCTCC+AGG - chr1_3:13109549-13109568 None:intergenic 70.0%
CCCCGTGCTAGGCGTGAGGG+TGG - chr1_3:13108599-13108618 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13107158 13113920 13107158 ID=Msa0104900;Name=Msa0104900
chr1_3 mRNA 13107158 13113920 13107158 ID=Msa0104900-mRNA-1;Parent=Msa0104900;Name=Msa0104900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=180|0.83|0.85|1|0.83|0.85|7|0|952
chr1_3 exon 13107158 13107565 13107158 ID=Msa0104900-mRNA-1:exon:5114;Parent=Msa0104900-mRNA-1
chr1_3 exon 13109506 13111428 13109506 ID=Msa0104900-mRNA-1:exon:5115;Parent=Msa0104900-mRNA-1
chr1_3 exon 13111689 13111810 13111689 ID=Msa0104900-mRNA-1:exon:5116;Parent=Msa0104900-mRNA-1
chr1_3 exon 13111899 13112040 13111899 ID=Msa0104900-mRNA-1:exon:5117;Parent=Msa0104900-mRNA-1
chr1_3 exon 13112389 13112613 13112389 ID=Msa0104900-mRNA-1:exon:5118;Parent=Msa0104900-mRNA-1
chr1_3 exon 13112770 13112844 13112770 ID=Msa0104900-mRNA-1:exon:5119;Parent=Msa0104900-mRNA-1
chr1_3 exon 13113777 13113920 13113777 ID=Msa0104900-mRNA-1:exon:5120;Parent=Msa0104900-mRNA-1
chr1_3 five_prime_UTR 13107158 13107337 13107158 ID=Msa0104900-mRNA-1:five_prime_utr;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13107338 13107565 13107338 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13109506 13111428 13109506 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13111689 13111810 13111689 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13111899 13112040 13111899 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13112389 13112613 13112389 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13112770 13112844 13112770 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
chr1_3 CDS 13113777 13113920 13113777 ID=Msa0104900-mRNA-1:cds;Parent=Msa0104900-mRNA-1
Gene Sequence

>Msa0104900

ATGGTAGCATGTATCGACATGGCATTCTCCGTAGTTCATTCAACTTCTTCTTATCCATGTTTGTTCTCCAACTCTTCTCCATTCTTCACCAACAATAGATTCCTAGGCTTGGGCCTGGGCTTTGAGTATCAAAGGAAAGGAAGAAGGATACTAAGGAGACATGTCAAGTTTGTTATCAGTGCACAGCTTTCCAAGTCATTTTCATTCACCTTCGGGCTTGACTCTCCGAATTTGAATTCCTTCCAATCCCATGATCTATCAAAATTGTCCTGGAGGGGACCAGTTCCGGGTGATATTGCTGAAGTCGAGGCATATTGTAGGATCTTTAGGAACTCCGAAAGGCTTCATTCTGCATTAATGGATGCATTATGCAATCCGTTGACTGGGGAATGTAGCGTCTCGTATGAGGTTTCATCAGATGAGAAACCTCAACTTGAAGATAAAATAGTTTCTGTTCTTGGATGCATGGTATCCCTTGTGAACAAAGGCAGGGACGATGTTCTTACTGGAAGGTCCTCAATTATGAACCCCTTTCTTGACGCAGAGATTAGCGAGATTGAGGATAAGCTCCCTCCACTTGCCGTTTTCAGAAGCGAGATGAAAAGGTGTTCCGAGAGTTTACATGTTGCCCTTCAGAATTATTTAATGCCTGATGATGATCGGAGCTTAAATGTATGGAGGAAACTTCAGAAACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTGGTGAGGGTTATCCCTGTCCTACACTATTTGCTAATTGGTGTCCTGTATATTTTTCTTCTTCTAAAGAAGACACGGAGTCTGAAGAATTAGAAACGGCTTTTTGGACTGGTAGTCAGGTAACAGAAGAAGGACTAACGTGGTTACTAGATAAAGGATATAAAACAATTATAGATATCAGAGCCGAGACTGTAAGAGACAATTTCTATCAAGCGGCCGTGAACGATGCTATTTCATCTGGCAAAATTAATTTAGTAAAAATCCCAGTTGAAGTTATGACTGCACCAACAATGGAACAGGTTGCGAGGTTTGCATCTTATGTTACAGATAGCAGCAAAAGGCCTATCTATCTTCATAGCAAGGAAGGAGTTTGGAGATCATCTGCTATGGTGTCTAGATGGAGGCAGTATATGACTCGCTCTTCGTCACAGAATGTTTCTAGTCCACCAATTACCCCCTCTAACATGTTATCACATTCTACAAATAGCTCTGCAAAACTGCAGGATTCTTCAGCGACTGCAGAAAGATCCTCCCTCAAAAAGGATATTACTTCTGTGCAAGACAATTTCGATGCAACACGCAGTTCTATTGGAACATCCGACAGAAGTGTCTCTGAAAAGAAGTATGATGAGAAAACACAAGGTAATGCAGCCTTAAATGGAATTTCTCCTGATAAGGAAGGATCTTTTCCAAGTTTTTCCAGCAAGATTAACCCTTTAAAAGCTCAGGTTCCTCCTCCGGATATCTTTTCCAAAAAAGCGATGTCCACATTTTTGGGTAGCAGGAAGATCTCACCTCCCGATTATGTCAATTATCAAATCAAAAGGGCGAAATTCTTACCGCAATTTAAGGACATGGCTATTGGAAGACGTGAAGGAGATGTGGTTGTTTCCAATGGTACTATTGTGGGTCCTGATAGTTTAAATGGATCAGCTCAGGTTGATCATCCATCTGGAGAGCCCGAAATTACGGTCGATGACAATCAAAAGTCTGTGAATGGGAATGCTTCTAGTTCTAGTAGGACAACAGTAAACGGATCAAGTCAAGGGGAATTACATTACATGGCTAATGCCGACGTCTCTGCCGTTGTGAATAATAATAATAATGTAACAACAAAATCTCCAAGGCTTGAAAATGGAACAGTCAAGGCCGGGTTAGCTTTACGCGATGAAGAGTTGGGATCCCTTGAAGGCGATATGTGTGCGTCGTCAACGGGAGTTGTAAGGGTGCAGTCAAGAAAGAAAGCTGAGATGTTCTTGGTTCGGACAGATGGATTTTCTTGTACTAGAGAAAAGGTCACGGAATCTTCTTTGGCTTTCACTCATCCTAGCACTCAGCAACAGATGCTTATGTGGAAGTCTACACCAAAGAATGTGCTGTTGTTAAAAAAGCTTGGGGACGAACTATTGGAAGAAGCAAAAATGGTTGCTAATTTCCTTCATCACCAAGAGAGAATGAATGTTATTGTGGAACCTGATGTGCATGATGTACTTGCCAGAATTCCAGGTTTTGGATTTGTGCAGACCTTTTACAGTCATGATACAAGTGATCTCCATGAGAAAGTAGATTTTGTGGCATGCTTGGGGGGTGACGGCGTTATACTGCATGCATCAAATCTATTCAGAGATGCTGTTCCCCCTATTGTGTCATTTAACCTTGGTTCCCTTGGTTTTCTGACTTCTCATAGTTTTGACGACTACAGGCAAGACTTAAGACAAGTCATTCACGGAAATACTTCACGAGATGGTGTCTACATTACTCTTAGGATGCGTCTCCGATGTGAAATTTTTCGTAAAGGTAAAGCAATTCCAGGGAAAGTATTTGATATCCTCAATGAGGTGGTTGTTGATCGGGGTTCTAATCCATACCTTTCAAAGATTGAATGCTATGAACATGATCACCTTATAACCAAAGTACAAGGTGATGGAGTCATTGTTGGAACTCCTACGGGAAGTACTGCATATTCTACGGCTGCTGGAGGTTCCATGATGCTATTATCTAATGACAAAAGAAAACTGCAGGTCCATCCAAACGTTCCGTGCATATTGTTTACCCCTATCTGTCCACATTCACTGTCATTTAGACCTGTCATACTTCCAGATTCTGCTCGATTAGAATTAAAGGTAAATTAA
Protein sequence

>Msa0104900

MVACIDMAFSVVHSTSSYPCLFSNSSPFFTNNRFLGLGLGFEYQRKGRRILRRHVKFVISAQLSKSFSFTFGLDSPNLNSFQSHDLSKLSWRGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVSSDEKPQLEDKIVSVLGCMVSLVNKGRDDVLTGRSSIMNPFLDAEISEIEDKLPPLAVFRSEMKRCSESLHVALQNYLMPDDDRSLNVWRKLQKLKNVCYDSGFPRGEGYPCPTLFANWCPVYFSSSKEDTESEELETAFWTGSQVTEEGLTWLLDKGYKTIIDIRAETVRDNFYQAAVNDAISSGKINLVKIPVEVMTAPTMEQVARFASYVTDSSKRPIYLHSKEGVWRSSAMVSRWRQYMTRSSSQNVSSPPITPSNMLSHSTNSSAKLQDSSATAERSSLKKDITSVQDNFDATRSSIGTSDRSVSEKKYDEKTQGNAALNGISPDKEGSFPSFSSKINPLKAQVPPPDIFSKKAMSTFLGSRKISPPDYVNYQIKRAKFLPQFKDMAIGRREGDVVVSNGTIVGPDSLNGSAQVDHPSGEPEITVDDNQKSVNGNASSSSRTTVNGSSQGELHYMANADVSAVVNNNNNVTTKSPRLENGTVKAGLALRDEELGSLEGDMCASSTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKNVLLLKKLGDELLEEAKMVANFLHHQERMNVIVEPDVHDVLARIPGFGFVQTFYSHDTSDLHEKVDFVACLGGDGVILHASNLFRDAVPPIVSFNLGSLGFLTSHSFDDYRQDLRQVIHGNTSRDGVYITLRMRLRCEIFRKGKAIPGKVFDILNEVVVDRGSNPYLSKIECYEHDHLITKVQGDGVIVGTPTGSTAYSTAAGGSMMLLSNDKRKLQVHPNVPCILFTPICPHSLSFRPVILPDSARLELKVN*