AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706700 MtrunA17_Chr8g0386001 96.809 282 5 1 1 282 1 278 0.0 554
Msa0706700 MtrunA17_Chr3g0131951 56.993 286 103 2 10 275 72 357 4.44e-116 338
Msa0706700 MtrunA17_Chr7g0214191 47.794 272 126 3 1 267 1 261 1.05e-77 237
Msa0706700 MtrunA17_Chr5g0428281 45.055 273 139 4 3 273 4 267 8.09e-74 227
Msa0706700 MtrunA17_Chr7g0214181 49.576 236 118 1 1 236 1 235 9.23e-74 226
Msa0706700 MtrunA17_Chr8g0386011 47.479 238 120 4 4 240 5 238 2.24e-69 215
Msa0706700 MtrunA17_Chr3g0131961 46.637 223 116 3 10 231 11 231 5.33e-67 209
Msa0706700 MtrunA17_Chr7g0215601 47.934 242 121 4 4 241 5 245 1.11e-66 208
Msa0706700 MtrunA17_Chr5g0444031 40.891 247 140 3 4 246 25 269 1.14e-60 193
Msa0706700 MtrunA17_Chr2g0278491 42.920 226 121 6 56 277 1 222 1.76e-50 166
Msa0706700 MtrunA17_Chr2g0295681 38.462 208 127 1 10 217 6 212 1.25e-46 156
Msa0706700 MtrunA17_Chr3g0125861 34.498 229 144 3 6 231 2 227 6.07e-42 144
Msa0706700 MtrunA17_Chr6g0450941 37.156 218 131 4 11 223 83 299 1.06e-41 145
Msa0706700 MtrunA17_Chr8g0388621 33.043 230 151 2 11 238 12 240 1.61e-41 143
Msa0706700 MtrunA17_Chr1g0159431 35.931 231 140 4 6 233 2 227 4.41e-41 142
Msa0706700 MtrunA17_Chr3g0119951 31.939 263 164 6 12 269 11 263 4.94e-41 142
Msa0706700 MtrunA17_Chr3g0126421 32.558 258 160 4 5 258 2 249 1.84e-40 140
Msa0706700 MtrunA17_Chr3g0119991 31.474 251 157 6 24 269 2 242 4.63e-38 134
Msa0706700 MtrunA17_Chr1g0158931 34.667 225 138 3 10 226 7 230 2.07e-37 133
Msa0706700 MtrunA17_Chr3g0126411 32.558 258 160 4 5 258 2 249 2.50e-37 132
Msa0706700 MtrunA17_Chr4g0059191 34.123 211 132 3 25 231 1 208 5.11e-35 125
Msa0706700 MtrunA17_Chr8g0359261 33.180 217 136 4 13 225 18 229 2.44e-32 119
Msa0706700 MtrunA17_Chr6g0450931 33.831 201 121 5 31 223 7 203 3.92e-32 118
Msa0706700 MtrunA17_Chr2g0314571 31.963 219 137 5 13 225 18 230 2.24e-29 111
Msa0706700 MtrunA17_Chr6g0450951 34.896 192 117 5 31 217 7 195 4.62e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706700 AT5G50800.1 48.814 295 135 7 1 281 1 293 6.97e-89 266
Msa0706700 AT5G23660.1 53.138 239 103 2 1 231 3 240 2.68e-85 257
Msa0706700 AT4G25010.1 47.872 282 131 4 1 267 1 281 2.16e-80 244
Msa0706700 AT3G48740.1 46.127 284 140 6 1 275 3 282 3.17e-80 244
Msa0706700 AT5G13170.1 43.885 278 130 4 10 269 12 281 2.84e-77 237
Msa0706700 AT5G50790.1 40.659 273 146 6 11 269 11 281 7.16e-68 213
Msa0706700 AT2G39060.1 46.414 237 120 3 10 242 10 243 9.57e-65 204
Msa0706700 AT4G15920.1 35.021 237 152 2 8 243 4 239 1.47e-51 169
Msa0706700 AT3G16690.1 32.710 214 144 0 10 223 6 219 2.79e-44 150
Msa0706700 AT3G16690.3 32.710 214 144 0 10 223 41 254 4.07e-44 151
Msa0706700 AT1G21460.1 36.752 234 136 4 6 230 2 232 2.04e-42 146
Msa0706700 AT5G62850.1 33.778 225 146 2 6 228 5 228 2.56e-39 137
Msa0706700 AT4G10850.1 33.654 208 136 1 11 216 12 219 2.12e-38 135
Msa0706700 AT5G53190.1 34.034 238 146 4 12 240 9 244 6.54e-38 135
Msa0706700 AT5G40260.1 34.579 214 134 4 10 218 9 221 2.21e-35 127
Msa0706700 AT3G28007.1 36.321 212 128 4 11 218 10 218 3.25e-35 127
Msa0706700 AT1G66770.1 31.963 219 146 2 1 216 1 219 7.43e-35 127
Msa0706700 AT3G14770.1 32.569 218 141 3 11 225 16 230 1.56e-31 117
Msa0706700 AT5G62850.2 33.862 189 122 2 6 192 5 192 4.18e-31 115
Msa0706700 AT5G40260.2 35.519 183 113 3 10 188 9 190 4.43e-30 112
Msa0706700 AT1G21460.2 35.417 192 118 3 6 194 2 190 1.99e-29 110
Msa0706700 AT3G16690.2 29.167 144 102 0 10 153 6 149 6.85e-21 88.2

Find 56 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGATTGGGTTGTTTAATT+TGG 0.148249 4_4:+79718126 Msa0706700:CDS
ATTACATACCCTTGCTTTCT+TGG 0.188827 4_4:-79717876 None:intergenic
ATACTCACCATAACGCTTAA+AGG 0.233412 4_4:-79718262 None:intergenic
CTGATTGGGTTGTTTAATTT+GGG 0.255905 4_4:+79718127 Msa0706700:CDS
TTGATATCATCTTTGTGTTC+TGG 0.282619 4_4:-79719092 None:intergenic
ACTAACTATGCTATAATATA+TGG 0.283413 4_4:-79719413 None:intergenic
TGCAGCACCTTTAAGCGTTA+TGG 0.323289 4_4:+79718255 Msa0706700:CDS
AACTTTGTGGGTATCACATT+TGG 0.323979 4_4:+79719005 Msa0706700:CDS
TCACAACAAGTGCAATTATA+TGG 0.328007 4_4:+79718425 Msa0706700:CDS
AGGCATAAACTCTACACTTT+TGG 0.335245 4_4:-79718383 None:intergenic
ACAGAACGTATCGAACTTCT+TGG 0.348472 4_4:+79718199 Msa0706700:CDS
CACACAACCAAATGCATTGA+TGG 0.355614 4_4:-79717813 None:intergenic
ATCTTCACATTGAAGCTGAT+TGG 0.360466 4_4:+79718112 Msa0706700:CDS
ATCATCACCATCAATGCATT+TGG 0.361524 4_4:+79717806 Msa0706700:CDS
GAAGCAAGAAGAGAAGAAAC+AGG 0.365263 4_4:+79719193 Msa0706700:CDS
CACTCTTCAGTGCAATGCTT+TGG 0.375576 4_4:+79717747 Msa0706700:CDS
TCTTCACATTGAAGCTGATT+GGG 0.409416 4_4:+79718113 Msa0706700:CDS
CCTCAAAGATATATTTGTTA+CGG 0.420795 4_4:+79718465 Msa0706700:CDS
GGGACAGCTTCCGAACTTTG+TGG 0.421425 4_4:+79718992 Msa0706700:intron
CTGAAGAGTGCAGCCACATA+TGG 0.434896 4_4:-79717734 None:intergenic
TGAGAAGTTTGATAAATTGA+AGG 0.436768 4_4:+79719266 Msa0706700:exon
TGTACTTGATTTCCTTCACT+TGG 0.445244 4_4:-79719227 None:intergenic
GGACAGCTTCCGAACTTTGT+GGG 0.454384 4_4:+79718993 Msa0706700:intron
TCCTATATTCAACATACAAA+AGG 0.460017 4_4:+79716994 Msa0706700:five_prime_UTR
CCGTAACAAATATATCTTTG+AGG 0.464322 4_4:-79718465 None:intergenic
AATGTGATACCCACAAAGTT+CGG 0.481534 4_4:-79719002 None:intergenic
AAATCAAGTACAACAACAAA+AGG 0.486924 4_4:+79719238 Msa0706700:CDS
TTCATACATGCATTTGTGCA+AGG 0.496378 4_4:-79719562 None:intergenic
GTTTGTAAGAAGAAAACAAC+AGG 0.503909 4_4:+79717695 Msa0706700:CDS
AGAAGGAGTGAAAGAGTGAA+AGG 0.510328 4_4:-79718403 None:intergenic
TCATACATGCATTTGTGCAA+GGG 0.513101 4_4:-79719561 None:intergenic
GAGAAGTTTGATAAATTGAA+GGG 0.516591 4_4:+79719267 Msa0706700:exon
CAGCCACATATGGAGCAGAT+TGG 0.522606 4_4:-79717724 None:intergenic
CTTATTGCTCCAAGAAAGCA+AGG 0.525447 4_4:+79717867 Msa0706700:CDS
GGAGCAATAAGTGATATAGA+TGG 0.527394 4_4:-79717855 None:intergenic
TCAAACATATTCTGATACCA+TGG 0.537188 4_4:+79717025 Msa0706700:exon
TTTCCAATCTGCTCCATATG+TGG 0.537778 4_4:+79717721 Msa0706700:CDS
ATTGGGTTGTTTAATTTGGG+AGG 0.542194 4_4:+79718130 Msa0706700:CDS
TATAGGAGAGAAGACAAGGA+AGG 0.550189 4_4:-79716978 None:intergenic
TGAATATAGGAGAGAAGACA+AGG 0.551688 4_4:-79716982 None:intergenic
TAATTGCACTTGTTGTGAGA+AGG 0.562113 4_4:-79718420 None:intergenic
GGCTATAAAGCAAAAGAAAG+AGG 0.564263 4_4:-79717510 None:intergenic
AACGTATCGAACTTCTTGGA+TGG 0.564898 4_4:+79718203 Msa0706700:CDS
GAAGAAACAAAACCAAGTGA+AGG 0.574594 4_4:+79719215 Msa0706700:CDS
CACATTTGGAACAATTCAGA+TGG 0.576532 4_4:+79719019 Msa0706700:CDS
TAATTTGGGAGGAATTTGCT+TGG 0.577927 4_4:+79718141 Msa0706700:CDS
AATGCACAAAACAACACACA+TGG 0.584531 4_4:-79719340 None:intergenic
CAAGTACAACAACAAAAGGA+AGG 0.611484 4_4:+79719242 Msa0706700:CDS
GCAATTATATGGCTGTGCTA+TGG 0.628621 4_4:+79718436 Msa0706700:CDS
TGTAAGAAGAAAACAACAGG+AGG 0.632520 4_4:+79717698 Msa0706700:CDS
AATAAGTGATATAGATGGCG+AGG 0.639838 4_4:-79717850 None:intergenic
TGTTCATATTGAGACTACAA+TGG 0.641365 4_4:+79719157 Msa0706700:CDS
ATGCACAAAACAACACACAT+GGG 0.656015 4_4:-79719339 None:intergenic
AGTATTGTCTCTGTGAACCA+TGG 0.657818 4_4:-79717042 None:intergenic
GAGGTGAACATTTAAGCTAG+AGG 0.674188 4_4:+79716934 Msa0706700:five_prime_UTR
TTATTGCTCCAAGAAAGCAA+GGG 0.730949 4_4:+79717868 Msa0706700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTATATATTA+AGG + chr4_4:79718760-79718779 Msa0706700:intron 0.0%
!! TATACTACTAAAAAAAATTA+TGG + chr4_4:79717924-79717943 Msa0706700:intron 10.0%
!! CTAATTTAATTATTATTAGT+AGG + chr4_4:79718045-79718064 Msa0706700:intron 10.0%
!!! CACATTATTAATTTTTTTTT+GGG + chr4_4:79718972-79718991 Msa0706700:intron 10.0%
!! AGATTTAGTGATAAAAAATA+AGG + chr4_4:79717198-79717217 Msa0706700:intron 15.0%
!!! TCCAATTTTAAAAAATTAGT+TGG + chr4_4:79717343-79717362 Msa0706700:intron 15.0%
!!! TCCAACTAATTTTTTAAAAT+TGG - chr4_4:79717347-79717366 None:intergenic 15.0%
!! TAAACAAAAAAAAAGTTGTA+AGG - chr4_4:79717472-79717491 None:intergenic 15.0%
!!! TTTTTTTTGTTTAATGTTGT+AGG + chr4_4:79717479-79717498 Msa0706700:intron 15.0%
!!! TTTTTTTGAAATACTTACAT+GGG - chr4_4:79717536-79717555 None:intergenic 15.0%
!!! ATTTTTTTGAAATACTTACA+TGG - chr4_4:79717537-79717556 None:intergenic 15.0%
!!! AATAGAAATTATAGTTGATA+AGG + chr4_4:79718668-79718687 Msa0706700:intron 15.0%
!! ACATCTCAAAAATAATTATA+TGG + chr4_4:79718837-79718856 Msa0706700:intron 15.0%
!!! GCACATTATTAATTTTTTTT+TGG + chr4_4:79718971-79718990 Msa0706700:intron 15.0%
!! CATTAAAAATCGTAAAATAT+GGG + chr4_4:79719359-79719378 Msa0706700:three_prime_UTR 15.0%
!!! TTTTTTGAAATACTTACATG+GGG - chr4_4:79717535-79717554 None:intergenic 20.0%
!!! ATTTTATGCCTACATAAAAA+CGG + chr4_4:79717772-79717791 Msa0706700:CDS 20.0%
!! TCAACAATTTATAGTAGAAT+TGG - chr4_4:79718499-79718518 None:intergenic 20.0%
!!! TTTTTTACTACCAGTTTATA+TGG + chr4_4:79718895-79718914 Msa0706700:intron 20.0%
!! GCATTAAAAATCGTAAAATA+TGG + chr4_4:79719358-79719377 Msa0706700:three_prime_UTR 20.0%
!! ACTAACTATGCTATAATATA+TGG - chr4_4:79719416-79719435 None:intergenic 20.0%
!!! AAACAGAGATTACATATTTT+TGG - chr4_4:79719473-79719492 None:intergenic 20.0%
!! AAAAATATGTAATCTCTGTT+TGG + chr4_4:79719472-79719491 Msa0706700:three_prime_UTR 20.0%
! TCCTATATTCAACATACAAA+AGG + chr4_4:79716994-79717013 Msa0706700:five_prime_UTR 25.0%
!! TCCTTTTGTATGTTGAATAT+AGG - chr4_4:79716998-79717017 None:intergenic 25.0%
!!! ATTTTTGTAGTTGGTATTCT+AGG + chr4_4:79717068-79717087 Msa0706700:CDS 25.0%
! GTTATTTAATTCTTGTGAGA+AGG - chr4_4:79717438-79717457 None:intergenic 25.0%
!!! TTTTTGAAATACTTACATGG+GGG - chr4_4:79717534-79717553 None:intergenic 25.0%
!! TTTTATGCCTACATAAAAAC+GGG + chr4_4:79717773-79717792 Msa0706700:CDS 25.0%
!! CCTCAAAGATATATTTGTTA+CGG + chr4_4:79718465-79718484 Msa0706700:CDS 25.0%
!! AAAGCTAGTTTATTGCTTAT+AGG + chr4_4:79718614-79718633 Msa0706700:intron 25.0%
! TAGCTAATAAAATTAGCATG+CGG + chr4_4:79718691-79718710 Msa0706700:intron 25.0%
! GTTGAATTAATTAAGAGAAG+TGG - chr4_4:79718872-79718891 None:intergenic 25.0%
!! TACCAGTTTATATGGTATTT+TGG + chr4_4:79718903-79718922 Msa0706700:intron 25.0%
! AACCAAAATACCATATAAAC+TGG - chr4_4:79718908-79718927 None:intergenic 25.0%
!!! AGTTTATATGGTATTTTGGT+TGG + chr4_4:79718907-79718926 Msa0706700:intron 25.0%
! GTTAATAGTATCAATCCATT+AGG - chr4_4:79718945-79718964 None:intergenic 25.0%
!!! TATGAACAACATTTTGAAGA+GGG - chr4_4:79719145-79719164 None:intergenic 25.0%
!!! ATATGAACAACATTTTGAAG+AGG - chr4_4:79719146-79719165 None:intergenic 25.0%
! AAATCAAGTACAACAACAAA+AGG + chr4_4:79719238-79719257 Msa0706700:CDS 25.0%
! TGAGAAGTTTGATAAATTGA+AGG + chr4_4:79719266-79719285 Msa0706700:exon 25.0%
! GAGAAGTTTGATAAATTGAA+GGG + chr4_4:79719267-79719286 Msa0706700:exon 25.0%
TCAAACATATTCTGATACCA+TGG + chr4_4:79717025-79717044 Msa0706700:exon 30.0%
! AATACTGCGATTTTTGTAGT+TGG + chr4_4:79717059-79717078 Msa0706700:CDS 30.0%
AAAAAAAAGATGTAGAGCTG+AGG - chr4_4:79717110-79717129 None:intergenic 30.0%
TATGATTCAGTTGACCATAA+TGG - chr4_4:79717303-79717322 None:intergenic 30.0%
GTTTACAATCAAGTTTAGAG+AGG - chr4_4:79717386-79717405 None:intergenic 30.0%
GTTTGTAAGAAGAAAACAAC+AGG + chr4_4:79717695-79717714 Msa0706700:CDS 30.0%
! ATTTGAGACTTGTGTGTTAT+TGG + chr4_4:79718081-79718100 Msa0706700:intron 30.0%
! CTGATTGGGTTGTTTAATTT+GGG + chr4_4:79718127-79718146 Msa0706700:CDS 30.0%
TCACAACAAGTGCAATTATA+TGG + chr4_4:79718425-79718444 Msa0706700:CDS 30.0%
CCGTAACAAATATATCTTTG+AGG - chr4_4:79718468-79718487 None:intergenic 30.0%
! CATCTTTACAAGTGTTACTA+TGG + chr4_4:79718563-79718582 Msa0706700:intron 30.0%
! TGGCTTTTATTATGTCCTAA+TGG + chr4_4:79718927-79718946 Msa0706700:intron 30.0%
TTGATATCATCTTTGTGTTC+TGG - chr4_4:79719095-79719114 None:intergenic 30.0%
TGTTCATATTGAGACTACAA+TGG + chr4_4:79719157-79719176 Msa0706700:CDS 30.0%
!!! AAGACAAGGAAGGTTTTGAA+GGG - chr4_4:79716971-79716990 None:intergenic 35.0%
TGAATATAGGAGAGAAGACA+AGG - chr4_4:79716985-79717004 None:intergenic 35.0%
CACTCTTGATCTAACCATTA+TGG + chr4_4:79717286-79717305 Msa0706700:intron 35.0%
CAACTGAATCATAAGTCGAT+AGG + chr4_4:79717310-79717329 Msa0706700:intron 35.0%
GGCTATAAAGCAAAAGAAAG+AGG - chr4_4:79717513-79717532 None:intergenic 35.0%
TGTAAGAAGAAAACAACAGG+AGG + chr4_4:79717698-79717717 Msa0706700:CDS 35.0%
!! CATTTCACCCGTTTTTATGT+AGG - chr4_4:79717783-79717802 None:intergenic 35.0%
ATCATCACCATCAATGCATT+TGG + chr4_4:79717806-79717825 Msa0706700:CDS 35.0%
AATAAGTGATATAGATGGCG+AGG - chr4_4:79717853-79717872 None:intergenic 35.0%
GGAGCAATAAGTGATATAGA+TGG - chr4_4:79717858-79717877 None:intergenic 35.0%
TTATTGCTCCAAGAAAGCAA+GGG + chr4_4:79717868-79717887 Msa0706700:CDS 35.0%
ATTACATACCCTTGCTTTCT+TGG - chr4_4:79717879-79717898 None:intergenic 35.0%
TATCATCAAGTTAGTGAACG+AGG + chr4_4:79717984-79718003 Msa0706700:intron 35.0%
ATCTTCACATTGAAGCTGAT+TGG + chr4_4:79718112-79718131 Msa0706700:CDS 35.0%
TCTTCACATTGAAGCTGATT+GGG + chr4_4:79718113-79718132 Msa0706700:CDS 35.0%
! GCTGATTGGGTTGTTTAATT+TGG + chr4_4:79718126-79718145 Msa0706700:CDS 35.0%
!! ATTGGGTTGTTTAATTTGGG+AGG + chr4_4:79718130-79718149 Msa0706700:CDS 35.0%
! TAATTTGGGAGGAATTTGCT+TGG + chr4_4:79718141-79718160 Msa0706700:CDS 35.0%
ATACTCACCATAACGCTTAA+AGG - chr4_4:79718265-79718284 None:intergenic 35.0%
TGAAATTGAACACGGTGATT+TGG - chr4_4:79718346-79718365 None:intergenic 35.0%
! AGGCATAAACTCTACACTTT+TGG - chr4_4:79718386-79718405 None:intergenic 35.0%
!! TAATTGCACTTGTTGTGAGA+AGG - chr4_4:79718423-79718442 None:intergenic 35.0%
AATGTGATACCCACAAAGTT+CGG - chr4_4:79719005-79719024 None:intergenic 35.0%
AACTTTGTGGGTATCACATT+TGG + chr4_4:79719005-79719024 Msa0706700:CDS 35.0%
! CACATTTGGAACAATTCAGA+TGG + chr4_4:79719019-79719038 Msa0706700:CDS 35.0%
! GGTAGCTTTTGATCATTTAC+AGG - chr4_4:79719074-79719093 None:intergenic 35.0%
GAAGAAACAAAACCAAGTGA+AGG + chr4_4:79719215-79719234 Msa0706700:CDS 35.0%
TGTACTTGATTTCCTTCACT+TGG - chr4_4:79719230-79719249 None:intergenic 35.0%
CAAGTACAACAACAAAAGGA+AGG + chr4_4:79719242-79719261 Msa0706700:CDS 35.0%
ATGCACAAAACAACACACAT+GGG - chr4_4:79719342-79719361 None:intergenic 35.0%
AATGCACAAAACAACACACA+TGG - chr4_4:79719343-79719362 None:intergenic 35.0%
TCATACATGCATTTGTGCAA+GGG - chr4_4:79719564-79719583 None:intergenic 35.0%
TTCATACATGCATTTGTGCA+AGG - chr4_4:79719565-79719584 None:intergenic 35.0%
GAGGTGAACATTTAAGCTAG+AGG + chr4_4:79716934-79716953 Msa0706700:five_prime_UTR 40.0%
!! GAAGACAAGGAAGGTTTTGA+AGG - chr4_4:79716972-79716991 None:intergenic 40.0%
TATAGGAGAGAAGACAAGGA+AGG - chr4_4:79716981-79717000 None:intergenic 40.0%
AGTATTGTCTCTGTGAACCA+TGG - chr4_4:79717045-79717064 None:intergenic 40.0%
CTGAATCATAAGTCGATAGG+TGG + chr4_4:79717313-79717332 Msa0706700:intron 40.0%
TTTCCAATCTGCTCCATATG+TGG + chr4_4:79717721-79717740 Msa0706700:CDS 40.0%
CACACAACCAAATGCATTGA+TGG - chr4_4:79717816-79717835 None:intergenic 40.0%
CTTATTGCTCCAAGAAAGCA+AGG + chr4_4:79717867-79717886 Msa0706700:CDS 40.0%
ACAGAACGTATCGAACTTCT+TGG + chr4_4:79718199-79718218 Msa0706700:CDS 40.0%
AACGTATCGAACTTCTTGGA+TGG + chr4_4:79718203-79718222 Msa0706700:CDS 40.0%
CTGCAAAAACACTAGTTGAG+AGG - chr4_4:79718240-79718259 None:intergenic 40.0%
!! CCACTCTCTGAAATTGAACA+CGG - chr4_4:79718354-79718373 None:intergenic 40.0%
AGAAGGAGTGAAAGAGTGAA+AGG - chr4_4:79718406-79718425 None:intergenic 40.0%
GCAATTATATGGCTGTGCTA+TGG + chr4_4:79718436-79718455 Msa0706700:CDS 40.0%
! AAGTGTTACTATGGCTCAGA+TGG + chr4_4:79718572-79718591 Msa0706700:intron 40.0%
! AGTGTTACTATGGCTCAGAT+GGG + chr4_4:79718573-79718592 Msa0706700:intron 40.0%
GAAGCAAGAAGAGAAGAAAC+AGG + chr4_4:79719193-79719212 Msa0706700:CDS 40.0%
CACTCTTCAGTGCAATGCTT+TGG + chr4_4:79717747-79717766 Msa0706700:CDS 45.0%
TGCAGCACCTTTAAGCGTTA+TGG + chr4_4:79718255-79718274 Msa0706700:CDS 45.0%
CCGTGTTCAATTTCAGAGAG+TGG + chr4_4:79718351-79718370 Msa0706700:intron 45.0%
CAGCCACATATGGAGCAGAT+TGG - chr4_4:79717727-79717746 None:intergenic 50.0%
! CTGAAGAGTGCAGCCACATA+TGG - chr4_4:79717737-79717756 None:intergenic 50.0%
GGACAGCTTCCGAACTTTGT+GGG + chr4_4:79718993-79719012 Msa0706700:intron 50.0%
GGGACAGCTTCCGAACTTTG+TGG + chr4_4:79718992-79719011 Msa0706700:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79716928 79719599 79716928 ID=Msa0706700;Name=Msa0706700
chr4_4 mRNA 79716928 79719599 79716928 ID=Msa0706700-mRNA-1;Parent=Msa0706700;Name=Msa0706700-mRNA-1;_AED=0.15;_eAED=0.15;_QI=116|1|1|1|1|1|6|331|282
chr4_4 exon 79716928 79717089 79716928 ID=Msa0706700-mRNA-1:exon:25747;Parent=Msa0706700-mRNA-1
chr4_4 exon 79717501 79717537 79717501 ID=Msa0706700-mRNA-1:exon:25748;Parent=Msa0706700-mRNA-1
chr4_4 exon 79717679 79717889 79717679 ID=Msa0706700-mRNA-1:exon:25749;Parent=Msa0706700-mRNA-1
chr4_4 exon 79718112 79718276 79718112 ID=Msa0706700-mRNA-1:exon:25750;Parent=Msa0706700-mRNA-1
chr4_4 exon 79718367 79718486 79718367 ID=Msa0706700-mRNA-1:exon:25751;Parent=Msa0706700-mRNA-1
chr4_4 exon 79718999 79719599 79718999 ID=Msa0706700-mRNA-1:exon:25752;Parent=Msa0706700-mRNA-1
chr4_4 five_prime_UTR 79716928 79717043 79716928 ID=Msa0706700-mRNA-1:five_prime_utr;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79717044 79717089 79717044 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79717501 79717537 79717501 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79717679 79717889 79717679 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79718112 79718276 79718112 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79718367 79718486 79718367 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 CDS 79718999 79719268 79718999 ID=Msa0706700-mRNA-1:cds;Parent=Msa0706700-mRNA-1
chr4_4 three_prime_UTR 79719269 79719599 79719269 ID=Msa0706700-mRNA-1:three_prime_utr;Parent=Msa0706700-mRNA-1
Gene Sequence

>Msa0706700

ATGGTTCACAGAGACAATACTGCGATTTTTGTAGTTGGTATTCTAGGTAACATTGCCTCTTTCTTTTGCTTTATAGCCCCCATATCAATATTTTATCAAGTTTGTAAGAAGAAAACAACAGGAGGTTTCCAATCTGCTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATATTTTATGCCTACATAAAAACGGGTGAAATGCTTATCATCACCATCAATGCATTTGGTTGTGTGATAGAAACAATTTACCTCGCCATCTATATCACTTATTGCTCCAAGAAAGCAAGGATCTTCACATTGAAGCTGATTGGGTTGTTTAATTTGGGAGGAATTTGCTTGGTGATTATTCTAACACATGTTCTAGCAAAAGAACGAACAGAACGTATCGAACTTCTTGGATGGATTTGTGTTGTCCTCTCAACTAGTGTTTTTGCAGCACCTTTAAGCGTTATGAGAGTGGTTATTCGCACCAAAAGTGTAGAGTTTATGCCTTTCACTCTTTCACTCCTTCTCACAACAAGTGCAATTATATGGCTGTGCTATGGTATTCTCCTCAAAGATATATTTGTTACGCTTCCGAACTTTGTGGGTATCACATTTGGAACAATTCAGATGGTGTTGTATGCAATATACAGAAAAAACAAGCCTGTAAATGATCAAAAGCTACCAGAACACAAAGATGATATCAATGAGAATCAGCTTCAAGTAGTAGTGATCCCTCTTCAAAATGTTGTTCATATTGAGACTACAATGGAGAATAAAGAAGAGAAGCAAGAAGAGAAGAAACAGGAAGAAACAAAACCAAGTGAAGGAAATCAAGTACAACAACAAAAGGAAGGTTGA

Protein sequence

>Msa0706700

MVHRDNTAIFVVGILGNIASFFCFIAPISIFYQVCKKKTTGGFQSAPYVAALFSAMLWIFYAYIKTGEMLIITINAFGCVIETIYLAIYITYCSKKARIFTLKLIGLFNLGGICLVIILTHVLAKERTERIELLGWICVVLSTSVFAAPLSVMRVVIRTKSVEFMPFTLSLLLTTSAIIWLCYGILLKDIFVTLPNFVGITFGTIQMVLYAIYRKNKPVNDQKLPEHKDDINENQLQVVVIPLQNVVHIETTMENKEEKQEEKKQEETKPSEGNQVQQQKEG*