Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848860 | XP_024630226.1 | 99.185 | 368 | 2 | 1 | 1 | 368 | 1 | 367 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848860 | sp|Q56YJ8|FAMA_ARATH | 55.779 | 398 | 98 | 9 | 43 | 368 | 11 | 402 | 6.52e-124 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848860 | A0A396G9I0 | 91.479 | 399 | 2 | 2 | 1 | 368 | 1 | 398 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0848860 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013810 | Msa0848860 | 0.805942 | 1.046067e-49 | -8.615850e-47 |
| Msa0035090 | Msa0848860 | 0.803631 | 3.179063e-49 | -8.615850e-47 |
| Msa0046050 | Msa0848860 | 0.803323 | 3.683269e-49 | -8.615850e-47 |
| Msa0046860 | Msa0848860 | 0.805003 | 1.646227e-49 | -8.615850e-47 |
| Msa0057270 | Msa0848860 | 0.823147 | 1.620142e-53 | -8.615850e-47 |
| Msa0057740 | Msa0848860 | 0.802652 | 5.068195e-49 | -8.615850e-47 |
| Msa0080620 | Msa0848860 | 0.817909 | 2.582546e-52 | -8.615850e-47 |
| Msa0083570 | Msa0848860 | 0.802942 | 4.414362e-49 | -8.615850e-47 |
| Msa0087580 | Msa0848860 | 0.810873 | 9.281235e-51 | -8.615850e-47 |
| Msa0092750 | Msa0848860 | 0.806289 | 8.841859e-50 | -8.615850e-47 |
| Msa0615850 | Msa0848860 | 0.826014 | 3.422803e-54 | -8.615850e-47 |
| Msa0622400 | Msa0848860 | 0.800265 | 1.562884e-48 | -8.615850e-47 |
| Msa0669710 | Msa0848860 | 0.803822 | 2.901827e-49 | -8.615850e-47 |
| Msa0669750 | Msa0848860 | 0.805244 | 1.465571e-49 | -8.615850e-47 |
| Msa0677250 | Msa0848860 | 0.812279 | 4.593522e-51 | -8.615850e-47 |
| Msa0688880 | Msa0848860 | 0.802203 | 6.272047e-49 | -8.615850e-47 |
| Msa0690720 | Msa0848860 | 0.814402 | 1.569061e-51 | -8.615850e-47 |
| Msa0698900 | Msa0848860 | 0.818495 | 1.902898e-52 | -8.615850e-47 |
| Msa0713530 | Msa0848860 | 0.800884 | 1.168710e-48 | -8.615850e-47 |
| Msa0729380 | Msa0848860 | 0.817084 | 3.960867e-52 | -8.615850e-47 |
| Msa0738970 | Msa0848860 | 0.807436 | 5.060555e-50 | -8.615850e-47 |
| Msa0747900 | Msa0848860 | 0.816574 | 5.156039e-52 | -8.615850e-47 |
| Msa0752830 | Msa0848860 | 0.800988 | 1.112989e-48 | -8.615850e-47 |
| Msa0755590 | Msa0848860 | 0.827006 | 1.984966e-54 | -8.615850e-47 |
| Msa0790520 | Msa0848860 | 0.823110 | 1.652453e-53 | -8.615850e-47 |
| Msa0797240 | Msa0848860 | 0.801793 | 7.613509e-49 | -8.615850e-47 |
| Msa0825520 | Msa0848860 | 0.809678 | 1.680275e-50 | -8.615850e-47 |
| Msa0835010 | Msa0848860 | 0.814598 | 1.420070e-51 | -8.615850e-47 |
| Msa0130120 | Msa0848860 | 0.803332 | 3.667567e-49 | -8.615850e-47 |
| Msa0133450 | Msa0848860 | 0.816440 | 5.523612e-52 | -8.615850e-47 |
| Msa0134300 | Msa0848860 | 0.809915 | 1.494260e-50 | -8.615850e-47 |
| Msa0149070 | Msa0848860 | 0.811812 | 5.804356e-51 | -8.615850e-47 |
| Msa0180600 | Msa0848860 | 0.809807 | 1.576080e-50 | -8.615850e-47 |
| Msa0180780 | Msa0848860 | 0.810777 | 9.736181e-51 | -8.615850e-47 |
| Msa0186510 | Msa0848860 | 0.804842 | 1.779237e-49 | -8.615850e-47 |
| Msa0197600 | Msa0848860 | 0.806520 | 7.904674e-50 | -8.615850e-47 |
| Msa0233200 | Msa0848860 | 0.804359 | 2.243357e-49 | -8.615850e-47 |
| Msa0369430 | Msa0848860 | 0.800260 | 1.566638e-48 | -8.615850e-47 |
| Msa0373950 | Msa0848860 | 0.821052 | 4.956285e-53 | -8.615850e-47 |
| Msa0423110 | Msa0848860 | 0.808716 | 2.701751e-50 | -8.615850e-47 |
| Msa0433270 | Msa0848860 | 0.824680 | 7.078530e-54 | -8.615850e-47 |
| Msa0437790 | Msa0848860 | 0.807964 | 3.907723e-50 | -8.615850e-47 |
| Msa0466040 | Msa0848860 | 0.806081 | 9.782939e-50 | -8.615850e-47 |
| Msa0467080 | Msa0848860 | 0.801063 | 1.074204e-48 | -8.615850e-47 |
| Msa0270090 | Msa0848860 | 0.814138 | 1.794909e-51 | -8.615850e-47 |
| Msa0291140 | Msa0848860 | 0.803419 | 3.518431e-49 | -8.615850e-47 |
| Msa0329060 | Msa0848860 | 0.806845 | 6.750578e-50 | -8.615850e-47 |
| Msa0547810 | Msa0848860 | 0.804135 | 2.497491e-49 | -8.615850e-47 |
| Msa0558890 | Msa0848860 | 0.801331 | 9.468678e-49 | -8.615850e-47 |
| Msa0595780 | Msa0848860 | 0.810847 | 9.405039e-51 | -8.615850e-47 |
| Msa0596080 | Msa0848860 | 0.805733 | 1.157702e-49 | -8.615850e-47 |
| Msa0848860 | Msa0859390 | 0.808656 | 2.781926e-50 | -8.615850e-47 |
| Msa0848860 | Msa0864730 | 0.809297 | 2.028890e-50 | -8.615850e-47 |
| Msa0848860 | Msa0864750 | 0.808363 | 3.214073e-50 | -8.615850e-47 |
| Msa0848860 | Msa0906310 | 0.802069 | 6.683830e-49 | -8.615850e-47 |
| Msa0848860 | Msa0959710 | 0.801386 | 9.226613e-49 | -8.615850e-47 |
| Msa0848860 | Msa0967540 | 0.812499 | 4.111646e-51 | -8.615850e-47 |
| Msa0848860 | Msa0975460 | 0.801090 | 1.060953e-48 | -8.615850e-47 |
| Msa0848860 | Msa0995130 | 0.814299 | 1.653604e-51 | -8.615850e-47 |
| Msa0848860 | Msa0999480 | 0.816602 | 5.082346e-52 | -8.615850e-47 |
| Msa0848860 | Msa1036020 | -0.804736 | 1.872493e-49 | -8.615850e-47 |
| Msa0848860 | Msa1057340 | 0.804853 | 1.769405e-49 | -8.615850e-47 |
| Msa0848860 | Msa1070930 | 0.801514 | 8.685541e-49 | -8.615850e-47 |
| Msa0848860 | Msa1085370 | 0.808699 | 2.723961e-50 | -8.615850e-47 |
| Msa0848860 | Msa1089130 | 0.815340 | 9.722482e-52 | -8.615850e-47 |
| Msa0848860 | Msa1127900 | 0.801066 | 1.072774e-48 | -8.615850e-47 |
| Msa0848860 | Msa1172120 | 0.800264 | 1.563822e-48 | -8.615850e-47 |
| Msa0848860 | Msa1182970 | 0.810996 | 8.729234e-51 | -8.615850e-47 |
| Msa0848860 | Msa1195860 | 0.814305 | 1.648851e-51 | -8.615850e-47 |
| Msa0848860 | Msa1199210 | 0.813711 | 2.228887e-51 | -8.615850e-47 |
| Msa0848860 | Msa1209240 | 0.815394 | 9.455393e-52 | -8.615850e-47 |
| Msa0848860 | Msa1218720 | 0.815414 | 9.358177e-52 | -8.615850e-47 |
| Msa0848860 | Msa1220680 | 0.804287 | 2.322956e-49 | -8.615850e-47 |
| Msa0848860 | Msa1245870 | 0.804480 | 2.117509e-49 | -8.615850e-47 |
| Msa0848860 | Msa1252730 | 0.803020 | 4.253479e-49 | -8.615850e-47 |
| Msa0848860 | Msa1257960 | 0.811564 | 6.571750e-51 | -8.615850e-47 |
| Msa0848860 | Msa1283120 | 0.804467 | 2.130654e-49 | -8.615850e-47 |
| Msa0848860 | Msa1309910 | 0.805519 | 1.283632e-49 | -8.615850e-47 |
| Msa0848860 | Msa1330900 | 0.802038 | 6.782125e-49 | -8.615850e-47 |
| Msa0848860 | Msa1333430 | 0.805200 | 1.497518e-49 | -8.615850e-47 |
| Msa0848860 | Msa1349360 | 0.805560 | 1.258297e-49 | -8.615850e-47 |
| Msa0848860 | Msa1364850 | 0.825532 | 4.454312e-54 | -8.615850e-47 |
| Msa0848860 | Msa1384620 | 0.807304 | 5.396081e-50 | -8.615850e-47 |
| Msa0848860 | Msa1419040 | 0.800033 | 1.741961e-48 | -8.615850e-47 |
| Msa0848860 | Msa1427020 | 0.814916 | 1.207093e-51 | -8.615850e-47 |
| Msa0848860 | Msa1429890 | 0.804805 | 1.810654e-49 | -8.615850e-47 |
| Msa0848860 | Msa1430630 | 0.800246 | 1.577019e-48 | -8.615850e-47 |
| Msa0848860 | Msa1435690 | 0.822815 | 1.935822e-53 | -8.615850e-47 |
| Msa0848860 | Msa1437150 | 0.804829 | 1.790461e-49 | -8.615850e-47 |
| Msa0848860 | Msa1451690 | 0.810690 | 1.016590e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848860 | MtrunA17_Chr0c01g0489461 | 91.479 | 399 | 2 | 2 | 1 | 368 | 1 | 398 | 0.0 | 737 |
| Msa0848860 | MtrunA17_Chr3g0132471 | 46.222 | 225 | 98 | 5 | 146 | 359 | 97 | 309 | 3.25e-55 | 184 |
| Msa0848860 | MtrunA17_Chr1g0191571 | 47.087 | 206 | 104 | 2 | 158 | 362 | 129 | 330 | 3.05e-53 | 179 |
| Msa0848860 | MtrunA17_Chr8g0345871 | 53.555 | 211 | 79 | 4 | 154 | 363 | 170 | 362 | 4.45e-52 | 177 |
| Msa0848860 | MtrunA17_Chr8g0366551 | 41.241 | 274 | 122 | 7 | 120 | 368 | 60 | 319 | 4.65e-52 | 176 |
| Msa0848860 | MtrunA17_Chr7g0273081 | 45.175 | 228 | 106 | 6 | 147 | 368 | 98 | 312 | 1.01e-51 | 174 |
| Msa0848860 | MtrunA17_Chr2g0287761 | 44.388 | 196 | 99 | 2 | 165 | 360 | 1 | 186 | 2.93e-48 | 162 |
| Msa0848860 | MtrunA17_Chr5g0426851 | 43.981 | 216 | 112 | 6 | 146 | 358 | 79 | 288 | 1.89e-47 | 163 |
| Msa0848860 | MtrunA17_Chr1g0158941 | 38.053 | 226 | 129 | 1 | 143 | 357 | 65 | 290 | 8.29e-47 | 161 |
| Msa0848860 | MtrunA17_Chr3g0126381 | 35.052 | 194 | 93 | 5 | 197 | 357 | 4 | 197 | 7.87e-27 | 105 |
| Msa0848860 | MtrunA17_Chr8g0366751 | 26.957 | 230 | 135 | 8 | 140 | 364 | 439 | 640 | 1.26e-15 | 78.2 |
| Msa0848860 | MtrunA17_Chr5g0411341 | 26.291 | 213 | 128 | 6 | 140 | 346 | 470 | 659 | 5.82e-14 | 73.2 |
| Msa0848860 | MtrunA17_Chr4g0052821 | 25.128 | 195 | 129 | 3 | 167 | 359 | 291 | 470 | 2.01e-13 | 71.2 |
| Msa0848860 | MtrunA17_Chr3g0126361 | 40.164 | 122 | 53 | 5 | 95 | 196 | 11 | 132 | 4.16e-13 | 66.2 |
| Msa0848860 | MtrunA17_Chr4g0052841 | 24.500 | 200 | 134 | 3 | 167 | 364 | 293 | 477 | 1.07e-12 | 68.9 |
| Msa0848860 | MtrunA17_Chr1g0185621 | 28.846 | 156 | 94 | 5 | 167 | 321 | 476 | 615 | 6.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848860 | AT3G24140.2 | 56.030 | 398 | 97 | 9 | 43 | 368 | 11 | 402 | 1.64e-125 | 367 |
| Msa0848860 | AT3G24140.1 | 55.779 | 398 | 98 | 9 | 43 | 368 | 11 | 402 | 6.63e-125 | 366 |
| Msa0848860 | AT3G06120.1 | 43.564 | 202 | 101 | 3 | 165 | 362 | 1 | 193 | 1.68e-48 | 163 |
| Msa0848860 | AT1G22490.1 | 43.458 | 214 | 107 | 4 | 154 | 366 | 104 | 304 | 7.36e-48 | 164 |
| Msa0848860 | AT1G72210.1 | 42.922 | 219 | 106 | 5 | 155 | 368 | 115 | 319 | 1.56e-47 | 164 |
| Msa0848860 | AT1G22490.2 | 45.989 | 187 | 88 | 3 | 154 | 340 | 104 | 277 | 1.01e-44 | 157 |
| Msa0848860 | AT1G72210.2 | 43.684 | 190 | 89 | 4 | 155 | 340 | 115 | 290 | 5.60e-43 | 152 |
| Msa0848860 | AT2G46810.2 | 41.176 | 204 | 98 | 3 | 158 | 359 | 114 | 297 | 6.47e-41 | 146 |
| Msa0848860 | AT4G01460.1 | 40.758 | 211 | 114 | 4 | 155 | 364 | 105 | 305 | 3.10e-40 | 145 |
| Msa0848860 | AT4G01460.2 | 40.758 | 211 | 114 | 4 | 155 | 364 | 105 | 305 | 3.10e-40 | 145 |
| Msa0848860 | AT2G46810.3 | 41.176 | 204 | 98 | 3 | 158 | 359 | 174 | 357 | 4.81e-40 | 145 |
| Msa0848860 | AT2G46810.1 | 41.176 | 204 | 98 | 3 | 158 | 359 | 186 | 369 | 4.96e-40 | 145 |
| Msa0848860 | AT2G46810.4 | 43.548 | 186 | 84 | 2 | 158 | 342 | 114 | 279 | 1.11e-38 | 141 |
| Msa0848860 | AT5G46690.1 | 41.964 | 224 | 114 | 4 | 154 | 362 | 77 | 299 | 1.60e-38 | 140 |
| Msa0848860 | AT3G61950.2 | 40.580 | 207 | 100 | 4 | 155 | 359 | 117 | 302 | 3.13e-38 | 139 |
| Msa0848860 | AT3G61950.6 | 42.487 | 193 | 89 | 3 | 155 | 346 | 117 | 288 | 4.40e-38 | 138 |
| Msa0848860 | AT3G61950.1 | 40.580 | 207 | 100 | 4 | 155 | 359 | 168 | 353 | 1.07e-37 | 139 |
| Msa0848860 | AT3G61950.3 | 42.487 | 193 | 89 | 3 | 155 | 346 | 168 | 339 | 2.11e-37 | 138 |
| Msa0848860 | AT5G46690.2 | 43.284 | 201 | 99 | 3 | 154 | 340 | 77 | 276 | 2.05e-35 | 131 |
| Msa0848860 | AT5G65320.1 | 36.321 | 212 | 122 | 4 | 155 | 363 | 92 | 293 | 1.92e-30 | 118 |
| Msa0848860 | AT5G65320.2 | 38.503 | 187 | 104 | 3 | 155 | 340 | 92 | 268 | 3.93e-27 | 108 |
| Msa0848860 | AT5G53210.2 | 65.714 | 70 | 24 | 0 | 163 | 232 | 100 | 169 | 1.80e-25 | 105 |
| Msa0848860 | AT5G53210.2 | 50.000 | 74 | 37 | 0 | 270 | 343 | 274 | 347 | 2.33e-15 | 77.0 |
| Msa0848860 | AT5G53210.1 | 65.714 | 70 | 24 | 0 | 163 | 232 | 100 | 169 | 2.77e-25 | 105 |
| Msa0848860 | AT5G53210.1 | 46.591 | 88 | 47 | 0 | 270 | 357 | 274 | 361 | 1.24e-18 | 86.7 |
| Msa0848860 | AT4G17880.1 | 27.354 | 223 | 126 | 7 | 123 | 342 | 380 | 569 | 3.87e-15 | 77.4 |
| Msa0848860 | AT1G32640.1 | 25.714 | 245 | 128 | 7 | 107 | 341 | 405 | 605 | 9.16e-15 | 76.3 |
| Msa0848860 | AT4G37850.2 | 25.573 | 262 | 161 | 6 | 107 | 360 | 90 | 325 | 6.07e-13 | 69.3 |
| Msa0848860 | AT4G37850.1 | 25.573 | 262 | 161 | 6 | 107 | 360 | 90 | 325 | 6.07e-13 | 69.3 |
| Msa0848860 | AT3G61950.4 | 66.667 | 42 | 14 | 0 | 155 | 196 | 168 | 209 | 1.01e-12 | 67.4 |
| Msa0848860 | AT3G61950.5 | 66.667 | 42 | 14 | 0 | 155 | 196 | 168 | 209 | 1.01e-12 | 67.4 |
| Msa0848860 | AT5G46760.1 | 24.898 | 245 | 150 | 7 | 102 | 342 | 358 | 572 | 4.13e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGATTCTTCGCGGTTTA+AGG | 0.091676 | 5_4:-34804343 | None:intergenic |
| GTGATGCAGTTTGCAGATTT+TGG | 0.187925 | 5_4:+34804309 | Msa0848860:CDS |
| GGTGATCAAGCTTCTATAAT+TGG | 0.199677 | 5_4:+34805214 | Msa0848860:CDS |
| TCACTTGTCTTAACAGTTCT+TGG | 0.201116 | 5_4:-34804609 | None:intergenic |
| CTGTTTGGAGTAAGAGAAAT+TGG | 0.281448 | 5_4:-34803211 | None:intergenic |
| CCTCCTGAAGTTTGTGTTTG+AGG | 0.310661 | 5_4:-34804243 | None:intergenic |
| TGGTCATTTGGTAAAGTAAC+TGG | 0.316468 | 5_4:-34805382 | None:intergenic |
| TCGCGGTTTAAGGCTAATTT+AGG | 0.318430 | 5_4:-34804333 | None:intergenic |
| TAAAGTCATCTTCTAAATAA+TGG | 0.320084 | 5_4:+34803890 | Msa0848860:exon |
| GTAGAAAGAGGCTTCTAGTA+TGG | 0.336451 | 5_4:-34806043 | None:intergenic |
| ACTAGCTTCATCTGGTCATT+TGG | 0.371823 | 5_4:-34805394 | None:intergenic |
| CACAATTCATTTGTAGAAAG+AGG | 0.374807 | 5_4:-34806055 | None:intergenic |
| CAATTTCTCTTACTCCAAAC+AGG | 0.379984 | 5_4:+34803212 | Msa0848860:five_prime_UTR |
| CTTCTGATGGTCTACTATAG+TGG | 0.380090 | 5_4:+34803111 | Msa0848860:five_prime_UTR |
| AAGCTAGTTGAGATGGAAAC+TGG | 0.382861 | 5_4:+34805409 | Msa0848860:CDS |
| TCAAATGACAAGAGTACTAT+AGG | 0.385992 | 5_4:-34806016 | None:intergenic |
| GTGATCAAGCTTCTATAATT+GGG | 0.386419 | 5_4:+34805215 | Msa0848860:CDS |
| AACCAGGCATGAGGGATCTA+AGG | 0.393915 | 5_4:-34804710 | None:intergenic |
| TTCTGATGGTCTACTATAGT+GGG | 0.406725 | 5_4:+34803112 | Msa0848860:five_prime_UTR |
| GATGTAGAAGTGAAACTTCT+AGG | 0.406812 | 5_4:+34805472 | Msa0848860:CDS |
| TATAGAGTTTGTGAGGGAAT+TGG | 0.411761 | 5_4:+34805243 | Msa0848860:CDS |
| GCCTTAAACCGCGAAGAATC+AGG | 0.418841 | 5_4:+34804342 | Msa0848860:CDS |
| CCATCTCAACTAGCTTCATC+TGG | 0.419409 | 5_4:-34805402 | None:intergenic |
| TTTCCATCGTCTTCTTCTGA+TGG | 0.423943 | 5_4:+34803098 | Msa0848860:five_prime_UTR |
| AAGCACAATCAAAACAAGTT+GGG | 0.436877 | 5_4:+34805317 | Msa0848860:CDS |
| CCCACCAATATGTTTCTTGA+GGG | 0.438462 | 5_4:-34803820 | None:intergenic |
| CAAAAGAGAAGGAGGCTACT+AGG | 0.441278 | 5_4:+34805292 | Msa0848860:CDS |
| GGAGAAAGATAACGACTATT+CGG | 0.442650 | 5_4:+34803911 | Msa0848860:CDS |
| TATATAATAAGAAACCTGTT+TGG | 0.443208 | 5_4:-34803226 | None:intergenic |
| GACTGAAAATTCATTGAATG+AGG | 0.445925 | 5_4:-34806112 | None:intergenic |
| TGCTGAGAGTAAGTCATGTT+TGG | 0.461833 | 5_4:+34805447 | Msa0848860:CDS |
| TATCGAGTTGGCGAAACATC+GGG | 0.463450 | 5_4:+34804186 | Msa0848860:CDS |
| GTCCTTAGATCCCTCATGCC+TGG | 0.466194 | 5_4:+34804708 | Msa0848860:CDS |
| AAAGGTGAAAGAAAGTCAAA+TGG | 0.469826 | 5_4:-34803180 | None:intergenic |
| GAAGCACAATCAAAACAAGT+TGG | 0.486078 | 5_4:+34805316 | Msa0848860:CDS |
| AAGGTGAAAGAAAGTCAAAT+GGG | 0.487694 | 5_4:-34803179 | None:intergenic |
| ATTCTCTCAAGGAGAAGGCC+TGG | 0.493901 | 5_4:+34805514 | Msa0848860:CDS |
| CCCTCAAGAAACATATTGGT+GGG | 0.494662 | 5_4:+34803820 | Msa0848860:five_prime_UTR |
| AAGAACTGTCTGTTCAATAG+TGG | 0.499927 | 5_4:-34805602 | None:intergenic |
| TGTGTTGAAGCTTGGTGGCA+TGG | 0.500253 | 5_4:-34804097 | None:intergenic |
| CCAGATGAAGCTAGTTGAGA+TGG | 0.511789 | 5_4:+34805402 | Msa0848860:CDS |
| GCCTGGTTCATACGTGCAAA+GGG | 0.513019 | 5_4:+34804725 | Msa0848860:CDS |
| CTGTTCAATAGTGGTGATGT+TGG | 0.513963 | 5_4:-34805593 | None:intergenic |
| AGGGCCCTCAAGAAACATAT+TGG | 0.516644 | 5_4:+34803816 | Msa0848860:five_prime_UTR |
| CCCCACCAATATGTTTCTTG+AGG | 0.518040 | 5_4:-34803821 | None:intergenic |
| GTGTTGAAGCTTGGTGGCAT+GGG | 0.524729 | 5_4:-34804096 | None:intergenic |
| GTATCGAGTTGGCGAAACAT+CGG | 0.525109 | 5_4:+34804185 | Msa0848860:CDS |
| GAATGAGGTTTATTTAAGAG+AGG | 0.528890 | 5_4:-34806097 | None:intergenic |
| TGCAAGAGAACAACAAGAAG+AGG | 0.529798 | 5_4:+34804580 | Msa0848860:CDS |
| ATGGTCTTGATCAACTGTCC+AGG | 0.530534 | 5_4:-34805532 | None:intergenic |
| TGCCTGGTTCATACGTGCAA+AGG | 0.533937 | 5_4:+34804724 | Msa0848860:CDS |
| TTTGTAGAAGAGAATCATGC+AGG | 0.533983 | 5_4:-34803144 | None:intergenic |
| AGCTAGTGATACAAGGTTCA+CGG | 0.534009 | 5_4:+34805879 | Msa0848860:CDS |
| TTAAAATTCTCTCAAGGAGA+AGG | 0.534852 | 5_4:+34805509 | Msa0848860:CDS |
| CATATCTTCAAGAGCAGCAA+TGG | 0.547350 | 5_4:-34805551 | None:intergenic |
| TCTTTATTCATTCAATGTCA+AGG | 0.550164 | 5_4:+34805621 | Msa0848860:CDS |
| ACCCTTTGCACGTATGAACC+AGG | 0.550812 | 5_4:-34804726 | None:intergenic |
| TTGAAGCTTGGTGGCATGGG+TGG | 0.555219 | 5_4:-34804093 | None:intergenic |
| GCCCTCAAGAAACATATTGG+TGG | 0.564311 | 5_4:+34803819 | Msa0848860:five_prime_UTR |
| CTTCGATACCTGATTCTTCG+CGG | 0.569325 | 5_4:-34804350 | None:intergenic |
| TGAATTGTGTAATCTATCAA+AGG | 0.569575 | 5_4:+34806069 | Msa0848860:three_prime_UTR |
| GTCTAGAATCACAAAAGAGA+AGG | 0.576264 | 5_4:+34805281 | Msa0848860:CDS |
| AGTTTCTGACGAGAACAACT+CGG | 0.576812 | 5_4:+34804533 | Msa0848860:CDS |
| ATGCCTCAAACACAAACTTC+AGG | 0.576898 | 5_4:+34804240 | Msa0848860:CDS |
| TAGTGGTGATGTTGGTGTGA+AGG | 0.588630 | 5_4:-34805585 | None:intergenic |
| TCAAGTGTGTTGAAGCTTGG+TGG | 0.589540 | 5_4:-34804102 | None:intergenic |
| TGACTCACATAGCTGTTGAA+AGG | 0.591781 | 5_4:+34804652 | Msa0848860:CDS |
| AGCACAATCAAAACAAGTTG+GGG | 0.596948 | 5_4:+34805318 | Msa0848860:CDS |
| TGAAAACAACAACGGAATGG+TGG | 0.599929 | 5_4:+34804209 | Msa0848860:CDS |
| TCCAGGTAGCTAGTGATACA+AGG | 0.601551 | 5_4:+34805872 | Msa0848860:intron |
| GCACGTATGAACCAGGCATG+AGG | 0.603673 | 5_4:-34804719 | None:intergenic |
| CAATGATTAAAATTCTCTCA+AGG | 0.606240 | 5_4:+34805503 | Msa0848860:CDS |
| ATCAAGCTTCTATAATTGGG+GGG | 0.607172 | 5_4:+34805218 | Msa0848860:CDS |
| CACGTATGAACCAGGCATGA+GGG | 0.608646 | 5_4:-34804718 | None:intergenic |
| TAGAATCACAAAAGAGAAGG+AGG | 0.611862 | 5_4:+34805284 | Msa0848860:CDS |
| TGATCAAGCTTCTATAATTG+GGG | 0.615729 | 5_4:+34805216 | Msa0848860:CDS |
| GAGGTTCAAATTGACAAGCG+TGG | 0.615809 | 5_4:+34804470 | Msa0848860:CDS |
| TAATCAAGTGTGTTGAAGCT+TGG | 0.616529 | 5_4:-34804105 | None:intergenic |
| TTAACAAAACTTCAGGTGGA+GGG | 0.617194 | 5_4:+34803797 | Msa0848860:intron |
| GAGAAATTGGAAGCAGACAA+AGG | 0.618216 | 5_4:-34803198 | None:intergenic |
| TAGCTGTTGAAAGGAATCGA+AGG | 0.623409 | 5_4:+34804661 | Msa0848860:CDS |
| GGGTGAAAACAACAACGGAA+TGG | 0.626152 | 5_4:+34804206 | Msa0848860:CDS |
| AAAACTTAGTATCTGCTGAA+CGG | 0.628856 | 5_4:-34805920 | None:intergenic |
| CCTCAAGAAACATATTGGTG+GGG | 0.630413 | 5_4:+34803821 | Msa0848860:five_prime_UTR |
| TCTGATGGTCTACTATAGTG+GGG | 0.638325 | 5_4:+34803113 | Msa0848860:five_prime_UTR |
| GATCAAGCTTCTATAATTGG+GGG | 0.640085 | 5_4:+34805217 | Msa0848860:CDS |
| CCTCAAACACAAACTTCAGG+AGG | 0.642336 | 5_4:+34804243 | Msa0848860:CDS |
| TCAAGCTTCTATAATTGGGG+GGG | 0.643949 | 5_4:+34805219 | Msa0848860:CDS |
| TTGTAGAAGAGAATCATGCA+GGG | 0.652898 | 5_4:-34803143 | None:intergenic |
| AGACCATCAGAAGAAGACGA+TGG | 0.681000 | 5_4:-34803101 | None:intergenic |
| GTTCAAATTGACAAGCGTGG+AGG | 0.694433 | 5_4:+34804473 | Msa0848860:CDS |
| AGGTGAAAGAAAGTCAAATG+GGG | 0.706461 | 5_4:-34803178 | None:intergenic |
| GGTTAGGAGAAAATGACGAG+AGG | 0.716694 | 5_4:+34804451 | Msa0848860:intron |
| ACATCGGGTGAAAACAACAA+CGG | 0.729217 | 5_4:+34804201 | Msa0848860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATAACTTTGTATTT+AGG | + | chr5_4:34803240-34803259 | Msa0848860:intron | 10.0% |
| !! | CAAATAGAAAAAGTAAAATT+AGG | + | chr5_4:34803369-34803388 | Msa0848860:intron | 15.0% |
| !!! | TAATTATGTCACTAAATTTT+AGG | - | chr5_4:34803443-34803462 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAGTAGTTAT+TGG | + | chr5_4:34803505-34803524 | Msa0848860:intron | 15.0% |
| !!! | ATTTTCTAATTTAGTTGAAA+TGG | + | chr5_4:34803651-34803670 | Msa0848860:intron | 15.0% |
| !!! | TTACTATAAAACTTTTTTTG+TGG | + | chr5_4:34803710-34803729 | Msa0848860:intron | 15.0% |
| !! | ATATATACAAAATATTTGAG+TGG | - | chr5_4:34803991-34804010 | None:intergenic | 15.0% |
| !!! | TAAATTTTAGAGAACAATTA+CGG | - | chr5_4:34805076-34805095 | None:intergenic | 15.0% |
| !!! | TGTTTTTGATTTTACAATAT+AGG | + | chr5_4:34805192-34805211 | Msa0848860:intron | 15.0% |
| !!! | GTTTTTGATTTTACAATATA+GGG | + | chr5_4:34805193-34805212 | Msa0848860:intron | 15.0% |
| !!! | TATATATTTTATATGTTGTG+TGG | + | chr5_4:34805987-34806006 | Msa0848860:three_prime_UTR | 15.0% |
| !! | TATATAATAAGAAACCTGTT+TGG | - | chr5_4:34803229-34803248 | None:intergenic | 20.0% |
| !! | TAGAAAAAGTAAAATTAGGA+AGG | + | chr5_4:34803373-34803392 | Msa0848860:intron | 20.0% |
| !! | AGAAAAAGTAAAATTAGGAA+GGG | + | chr5_4:34803374-34803393 | Msa0848860:intron | 20.0% |
| !! | GTAATTTACTAGATTAAAGT+TGG | - | chr5_4:34803535-34803554 | None:intergenic | 20.0% |
| !! | TAACAATATGCAAATAACTA+TGG | + | chr5_4:34803621-34803640 | Msa0848860:intron | 20.0% |
| !! | TAAAGTCATCTTCTAAATAA+TGG | + | chr5_4:34803890-34803909 | Msa0848860:exon | 20.0% |
| !!! | GTAACAATAATTTGAAACTT+TGG | - | chr5_4:34805054-34805073 | None:intergenic | 20.0% |
| !!! | ATACTTGTGATTTTATTAGA+TGG | + | chr5_4:34805751-34805770 | Msa0848860:intron | 20.0% |
| !! | CAAACATAAACTAAAATTTG+AGG | + | chr5_4:34805799-34805818 | Msa0848860:intron | 20.0% |
| !!! | AATGAGTGTTTTTATCGAAA+GGG | - | chr5_4:34803080-34803099 | None:intergenic | 25.0% |
| !!! | AAATGAGTGTTTTTATCGAA+AGG | - | chr5_4:34803081-34803100 | None:intergenic | 25.0% |
| ! | ATTTAGTGACATAATTAGAG+AGG | + | chr5_4:34803446-34803465 | Msa0848860:intron | 25.0% |
| ! | TAATGAGAGAAATTTAGTGA+GGG | - | chr5_4:34803483-34803502 | None:intergenic | 25.0% |
| ! | TTAATGAGAGAAATTTAGTG+AGG | - | chr5_4:34803484-34803503 | None:intergenic | 25.0% |
| !! | TTTTGTGTTCTTTTGTTCAA+TGG | + | chr5_4:34803772-34803791 | Msa0848860:intron | 25.0% |
| !! | AATGGATTTAACAAAACTTC+AGG | + | chr5_4:34803790-34803809 | Msa0848860:intron | 25.0% |
| ! | ACAAAGACATAAAAAAGACA+CGG | - | chr5_4:34803966-34803985 | None:intergenic | 25.0% |
| ! | AAAATTTGAGCAAAACAACA+TGG | - | chr5_4:34804058-34804077 | None:intergenic | 25.0% |
| !!! | ATTTTGGTCTTCTATCTTAT+TGG | - | chr5_4:34804409-34804428 | None:intergenic | 25.0% |
| ! | ATTGCACCAAAATTAAACAA+TGG | + | chr5_4:34805114-34805133 | Msa0848860:intron | 25.0% |
| !!! | CTCTAACCATTGTTTAATTT+TGG | - | chr5_4:34805123-34805142 | None:intergenic | 25.0% |
| ! | CAATGATTAAAATTCTCTCA+AGG | + | chr5_4:34805503-34805522 | Msa0848860:CDS | 25.0% |
| ! | TCTTTATTCATTCAATGTCA+AGG | + | chr5_4:34805621-34805640 | Msa0848860:CDS | 25.0% |
| ! | ATTATCTCATAAGATGTGAA+TGG | - | chr5_4:34805710-34805729 | None:intergenic | 25.0% |
| ! | TGAATTGTGTAATCTATCAA+AGG | + | chr5_4:34806069-34806088 | Msa0848860:three_prime_UTR | 25.0% |
| !! | TGTTTTTATCGAAAGGGTTA+TGG | - | chr5_4:34803074-34803093 | None:intergenic | 30.0% |
| AAGGTGAAAGAAAGTCAAAT+GGG | - | chr5_4:34803182-34803201 | None:intergenic | 30.0% | |
| AAAGGTGAAAGAAAGTCAAA+TGG | - | chr5_4:34803183-34803202 | None:intergenic | 30.0% | |
| TTTATGTACATCACATAGCT+AGG | + | chr5_4:34803268-34803287 | Msa0848860:intron | 30.0% | |
| TTATGTACATCACATAGCTA+GGG | + | chr5_4:34803269-34803288 | Msa0848860:intron | 30.0% | |
| AAACAACATGGTGATATATG+AGG | - | chr5_4:34804046-34804065 | None:intergenic | 30.0% | |
| ! | CTCAAATTTTGAATCTTTGC+AGG | + | chr5_4:34804068-34804087 | Msa0848860:intron | 30.0% |
| GAAACTTGAGAAAATAAACC+GGG | - | chr5_4:34804377-34804396 | None:intergenic | 30.0% | |
| GGAAACTTGAGAAAATAAAC+CGG | - | chr5_4:34804378-34804397 | None:intergenic | 30.0% | |
| ! | TCTATCTTATTGGTTAAGAC+AGG | - | chr5_4:34804399-34804418 | None:intergenic | 30.0% |
| ATGTTATAGCTGCTGAAATT+TGG | + | chr5_4:34804784-34804803 | Msa0848860:intron | 30.0% | |
| TGTTATAGCTGCTGAAATTT+GGG | + | chr5_4:34804785-34804804 | Msa0848860:intron | 30.0% | |
| TGATACCATGTTGAAATTTG+GGG | - | chr5_4:34804856-34804875 | None:intergenic | 30.0% | |
| CTGATACCATGTTGAAATTT+GGG | - | chr5_4:34804857-34804876 | None:intergenic | 30.0% | |
| TCTGATACCATGTTGAAATT+TGG | - | chr5_4:34804858-34804877 | None:intergenic | 30.0% | |
| GTGATCAAGCTTCTATAATT+GGG | + | chr5_4:34805215-34805234 | Msa0848860:CDS | 30.0% | |
| TGATCAAGCTTCTATAATTG+GGG | + | chr5_4:34805216-34805235 | Msa0848860:CDS | 30.0% | |
| AAGCACAATCAAAACAAGTT+GGG | + | chr5_4:34805317-34805336 | Msa0848860:CDS | 30.0% | |
| AAAGTAACTGGAAAAAATGG+AGG | - | chr5_4:34805373-34805392 | None:intergenic | 30.0% | |
| GGTAAAGTAACTGGAAAAAA+TGG | - | chr5_4:34805376-34805395 | None:intergenic | 30.0% | |
| TTAAAATTCTCTCAAGGAGA+AGG | + | chr5_4:34805509-34805528 | Msa0848860:CDS | 30.0% | |
| AAAACTTAGTATCTGCTGAA+CGG | - | chr5_4:34805923-34805942 | None:intergenic | 30.0% | |
| !! | TCAAATGACAAGAGTACTAT+AGG | - | chr5_4:34806019-34806038 | None:intergenic | 30.0% |
| CACAATTCATTTGTAGAAAG+AGG | - | chr5_4:34806058-34806077 | None:intergenic | 30.0% | |
| GAATGAGGTTTATTTAAGAG+AGG | - | chr5_4:34806100-34806119 | None:intergenic | 30.0% | |
| GACTGAAAATTCATTGAATG+AGG | - | chr5_4:34806115-34806134 | None:intergenic | 30.0% | |
| ! | TTTTATCGAAAGGGTTATGG+AGG | - | chr5_4:34803071-34803090 | None:intergenic | 35.0% |
| TTCTGATGGTCTACTATAGT+GGG | + | chr5_4:34803112-34803131 | Msa0848860:five_prime_UTR | 35.0% | |
| TTGTAGAAGAGAATCATGCA+GGG | - | chr5_4:34803146-34803165 | None:intergenic | 35.0% | |
| TTTGTAGAAGAGAATCATGC+AGG | - | chr5_4:34803147-34803166 | None:intergenic | 35.0% | |
| AGGTGAAAGAAAGTCAAATG+GGG | - | chr5_4:34803181-34803200 | None:intergenic | 35.0% | |
| ! | CTGTTTGGAGTAAGAGAAAT+TGG | - | chr5_4:34803214-34803233 | None:intergenic | 35.0% |
| CAATTTCTCTTACTCCAAAC+AGG | + | chr5_4:34803212-34803231 | Msa0848860:five_prime_UTR | 35.0% | |
| GGATTTAACAAAACTTCAGG+TGG | + | chr5_4:34803793-34803812 | Msa0848860:intron | 35.0% | |
| TTTAACAAAACTTCAGGTGG+AGG | + | chr5_4:34803796-34803815 | Msa0848860:intron | 35.0% | |
| TTAACAAAACTTCAGGTGGA+GGG | + | chr5_4:34803797-34803816 | Msa0848860:intron | 35.0% | |
| ! | ATTTTGTCTTGCATGAAGTG+AGG | + | chr5_4:34803845-34803864 | Msa0848860:five_prime_UTR | 35.0% |
| !! | CATGAAGTGAGGTTGTTTTA+GGG | + | chr5_4:34803856-34803875 | Msa0848860:five_prime_UTR | 35.0% |
| GGAGAAAGATAACGACTATT+CGG | + | chr5_4:34803911-34803930 | Msa0848860:CDS | 35.0% | |
| TAATCAAGTGTGTTGAAGCT+TGG | - | chr5_4:34804108-34804127 | None:intergenic | 35.0% | |
| ! | CGTATTGTTGTTGTTGTTGT+TGG | - | chr5_4:34804152-34804171 | None:intergenic | 35.0% |
| GACCAAAATTTGATGTTGAG+TGG | + | chr5_4:34804420-34804439 | Msa0848860:intron | 35.0% | |
| ! | CACCACTCAACATCAAATTT+TGG | - | chr5_4:34804425-34804444 | None:intergenic | 35.0% |
| CAAAATTTGATGTTGAGTGG+TGG | + | chr5_4:34804423-34804442 | Msa0848860:intron | 35.0% | |
| TCACTTGTCTTAACAGTTCT+TGG | - | chr5_4:34804612-34804631 | None:intergenic | 35.0% | |
| GTTATAGCTGCTGAAATTTG+GGG | + | chr5_4:34804786-34804805 | Msa0848860:intron | 35.0% | |
| AACTGTGTCCTTGATTTCTA+AGG | - | chr5_4:34805012-34805031 | None:intergenic | 35.0% | |
| GGTGATCAAGCTTCTATAAT+TGG | + | chr5_4:34805214-34805233 | Msa0848860:CDS | 35.0% | |
| GATCAAGCTTCTATAATTGG+GGG | + | chr5_4:34805217-34805236 | Msa0848860:CDS | 35.0% | |
| ATCAAGCTTCTATAATTGGG+GGG | + | chr5_4:34805218-34805237 | Msa0848860:CDS | 35.0% | |
| TATAGAGTTTGTGAGGGAAT+TGG | + | chr5_4:34805243-34805262 | Msa0848860:CDS | 35.0% | |
| ! | GTCTAGAATCACAAAAGAGA+AGG | + | chr5_4:34805281-34805300 | Msa0848860:CDS | 35.0% |
| TAGAATCACAAAAGAGAAGG+AGG | + | chr5_4:34805284-34805303 | Msa0848860:CDS | 35.0% | |
| GAAGCACAATCAAAACAAGT+TGG | + | chr5_4:34805316-34805335 | Msa0848860:CDS | 35.0% | |
| AGCACAATCAAAACAAGTTG+GGG | + | chr5_4:34805318-34805337 | Msa0848860:CDS | 35.0% | |
| TGGTCATTTGGTAAAGTAAC+TGG | - | chr5_4:34805385-34805404 | None:intergenic | 35.0% | |
| GATGTAGAAGTGAAACTTCT+AGG | + | chr5_4:34805472-34805491 | Msa0848860:CDS | 35.0% | |
| AAGAACTGTCTGTTCAATAG+TGG | - | chr5_4:34805605-34805624 | None:intergenic | 35.0% | |
| !!! | GTATTTTTTGTGATGTGTCC+AGG | + | chr5_4:34805855-34805874 | Msa0848860:intron | 35.0% |
| TTTCCATCGTCTTCTTCTGA+TGG | + | chr5_4:34803098-34803117 | Msa0848860:five_prime_UTR | 40.0% | |
| CTTCTGATGGTCTACTATAG+TGG | + | chr5_4:34803111-34803130 | Msa0848860:five_prime_UTR | 40.0% | |
| TCTGATGGTCTACTATAGTG+GGG | + | chr5_4:34803113-34803132 | Msa0848860:five_prime_UTR | 40.0% | |
| GAGAAATTGGAAGCAGACAA+AGG | - | chr5_4:34803201-34803220 | None:intergenic | 40.0% | |
| CCCACCAATATGTTTCTTGA+GGG | - | chr5_4:34803823-34803842 | None:intergenic | 40.0% | |
| CCCTCAAGAAACATATTGGT+GGG | + | chr5_4:34803820-34803839 | Msa0848860:five_prime_UTR | 40.0% | |
| CCTCAAGAAACATATTGGTG+GGG | + | chr5_4:34803821-34803840 | Msa0848860:five_prime_UTR | 40.0% | |
| !! | GCATGAAGTGAGGTTGTTTT+AGG | + | chr5_4:34803855-34803874 | Msa0848860:five_prime_UTR | 40.0% |
| !!! | CAGCTTTTGAAGTATCGAGT+TGG | + | chr5_4:34804174-34804193 | Msa0848860:CDS | 40.0% |
| ACATCGGGTGAAAACAACAA+CGG | + | chr5_4:34804201-34804220 | Msa0848860:CDS | 40.0% | |
| TGAAAACAACAACGGAATGG+TGG | + | chr5_4:34804209-34804228 | Msa0848860:CDS | 40.0% | |
| ATGCCTCAAACACAAACTTC+AGG | + | chr5_4:34804240-34804259 | Msa0848860:CDS | 40.0% | |
| ! | CAAACTTCAGGAGGCTTTTA+TGG | + | chr5_4:34804252-34804271 | Msa0848860:CDS | 40.0% |
| ! | GTGATGCAGTTTGCAGATTT+TGG | + | chr5_4:34804309-34804328 | Msa0848860:CDS | 40.0% |
| ! | TCGCGGTTTAAGGCTAATTT+AGG | - | chr5_4:34804336-34804355 | None:intergenic | 40.0% |
| AGTTTCTGACGAGAACAACT+CGG | + | chr5_4:34804533-34804552 | Msa0848860:CDS | 40.0% | |
| TGCAAGAGAACAACAAGAAG+AGG | + | chr5_4:34804580-34804599 | Msa0848860:CDS | 40.0% | |
| TGACTCACATAGCTGTTGAA+AGG | + | chr5_4:34804652-34804671 | Msa0848860:CDS | 40.0% | |
| TAGCTGTTGAAAGGAATCGA+AGG | + | chr5_4:34804661-34804680 | Msa0848860:CDS | 40.0% | |
| TCATCCTTACAAAGCTGGTT+TGG | - | chr5_4:34804827-34804846 | None:intergenic | 40.0% | |
| CTAACTCATCCTTACAAAGC+TGG | - | chr5_4:34804832-34804851 | None:intergenic | 40.0% | |
| ! | CAGCTTTGTAAGGATGAGTT+AGG | + | chr5_4:34804830-34804849 | Msa0848860:intron | 40.0% |
| TTAGGCCCCAAATTTCAACA+TGG | + | chr5_4:34804848-34804867 | Msa0848860:intron | 40.0% | |
| TGGTATCAGAGCGTGATTAA+CGG | + | chr5_4:34804868-34804887 | Msa0848860:intron | 40.0% | |
| TCCTGTCTCCTTAGAAATCA+AGG | + | chr5_4:34805001-34805020 | Msa0848860:intron | 40.0% | |
| ! | TCCTTGATTTCTAAGGAGAC+AGG | - | chr5_4:34805005-34805024 | None:intergenic | 40.0% |
| TCAAGCTTCTATAATTGGGG+GGG | + | chr5_4:34805219-34805238 | Msa0848860:CDS | 40.0% | |
| ! | ACTAGCTTCATCTGGTCATT+TGG | - | chr5_4:34805397-34805416 | None:intergenic | 40.0% |
| AAGCTAGTTGAGATGGAAAC+TGG | + | chr5_4:34805409-34805428 | Msa0848860:CDS | 40.0% | |
| TGCTGAGAGTAAGTCATGTT+TGG | + | chr5_4:34805447-34805466 | Msa0848860:CDS | 40.0% | |
| CATATCTTCAAGAGCAGCAA+TGG | - | chr5_4:34805554-34805573 | None:intergenic | 40.0% | |
| ! | CTGTTCAATAGTGGTGATGT+TGG | - | chr5_4:34805596-34805615 | None:intergenic | 40.0% |
| AGCTAGTGATACAAGGTTCA+CGG | + | chr5_4:34805879-34805898 | Msa0848860:CDS | 40.0% | |
| GTAGAAAGAGGCTTCTAGTA+TGG | - | chr5_4:34806046-34806065 | None:intergenic | 40.0% | |
| AGACCATCAGAAGAAGACGA+TGG | - | chr5_4:34803104-34803123 | None:intergenic | 45.0% | |
| AGGGCCCTCAAGAAACATAT+TGG | + | chr5_4:34803816-34803835 | Msa0848860:five_prime_UTR | 45.0% | |
| GCCCTCAAGAAACATATTGG+TGG | + | chr5_4:34803819-34803838 | Msa0848860:five_prime_UTR | 45.0% | |
| CCCCACCAATATGTTTCTTG+AGG | - | chr5_4:34803824-34803843 | None:intergenic | 45.0% | |
| TCAAGTGTGTTGAAGCTTGG+TGG | - | chr5_4:34804105-34804124 | None:intergenic | 45.0% | |
| !! | GTATCGAGTTGGCGAAACAT+CGG | + | chr5_4:34804185-34804204 | Msa0848860:CDS | 45.0% |
| !! | TATCGAGTTGGCGAAACATC+GGG | + | chr5_4:34804186-34804205 | Msa0848860:CDS | 45.0% |
| GGGTGAAAACAACAACGGAA+TGG | + | chr5_4:34804206-34804225 | Msa0848860:CDS | 45.0% | |
| CCTCCTGAAGTTTGTGTTTG+AGG | - | chr5_4:34804246-34804265 | None:intergenic | 45.0% | |
| CCTCAAACACAAACTTCAGG+AGG | + | chr5_4:34804243-34804262 | Msa0848860:CDS | 45.0% | |
| ACCTGATTCTTCGCGGTTTA+AGG | - | chr5_4:34804346-34804365 | None:intergenic | 45.0% | |
| CTTCGATACCTGATTCTTCG+CGG | - | chr5_4:34804353-34804372 | None:intergenic | 45.0% | |
| !! | AGAATCAGGTATCGAAGACC+CGG | + | chr5_4:34804356-34804375 | Msa0848860:intron | 45.0% |
| ! | TTGATGTTGAGTGGTGGTGA+TGG | + | chr5_4:34804429-34804448 | Msa0848860:intron | 45.0% |
| ! | TGATGTTGAGTGGTGGTGAT+GGG | + | chr5_4:34804430-34804449 | Msa0848860:intron | 45.0% |
| GGTTAGGAGAAAATGACGAG+AGG | + | chr5_4:34804451-34804470 | Msa0848860:intron | 45.0% | |
| GAGGTTCAAATTGACAAGCG+TGG | + | chr5_4:34804470-34804489 | Msa0848860:CDS | 45.0% | |
| GTTCAAATTGACAAGCGTGG+AGG | + | chr5_4:34804473-34804492 | Msa0848860:CDS | 45.0% | |
| !! | TGGTTTGGTGAGGATGAGTT+AGG | - | chr5_4:34804812-34804831 | None:intergenic | 45.0% |
| !! | CTTACAAAGCTGGTTTGGTG+AGG | - | chr5_4:34804822-34804841 | None:intergenic | 45.0% |
| ! | CTCACCAAACCAGCTTTGTA+AGG | + | chr5_4:34804820-34804839 | Msa0848860:intron | 45.0% |
| ! | TCCTCAGACACATGCTGTTT+GGG | + | chr5_4:34804939-34804958 | Msa0848860:intron | 45.0% |
| CAAAAGAGAAGGAGGCTACT+AGG | + | chr5_4:34805292-34805311 | Msa0848860:CDS | 45.0% | |
| ! | CCATCTCAACTAGCTTCATC+TGG | - | chr5_4:34805405-34805424 | None:intergenic | 45.0% |
| CCAGATGAAGCTAGTTGAGA+TGG | + | chr5_4:34805402-34805421 | Msa0848860:CDS | 45.0% | |
| ! | ATGGTCTTGATCAACTGTCC+AGG | - | chr5_4:34805535-34805554 | None:intergenic | 45.0% |
| ! | TAGTGGTGATGTTGGTGTGA+AGG | - | chr5_4:34805588-34805607 | None:intergenic | 45.0% |
| TCCAGGTAGCTAGTGATACA+AGG | + | chr5_4:34805872-34805891 | Msa0848860:intron | 45.0% | |
| ACCTTGTATCACTAGCTACC+TGG | - | chr5_4:34805876-34805895 | None:intergenic | 45.0% | |
| ! | GTGTTGAAGCTTGGTGGCAT+GGG | - | chr5_4:34804099-34804118 | None:intergenic | 50.0% |
| ! | TGTGTTGAAGCTTGGTGGCA+TGG | - | chr5_4:34804100-34804119 | None:intergenic | 50.0% |
| GCCTTAAACCGCGAAGAATC+AGG | + | chr5_4:34804342-34804361 | Msa0848860:CDS | 50.0% | |
| !! | TTGAGTGGTGGTGATGGGTT+AGG | + | chr5_4:34804435-34804454 | Msa0848860:intron | 50.0% |
| AACCAGGCATGAGGGATCTA+AGG | - | chr5_4:34804713-34804732 | None:intergenic | 50.0% | |
| CACGTATGAACCAGGCATGA+GGG | - | chr5_4:34804721-34804740 | None:intergenic | 50.0% | |
| TGCCTGGTTCATACGTGCAA+AGG | + | chr5_4:34804724-34804743 | Msa0848860:CDS | 50.0% | |
| GCCTGGTTCATACGTGCAAA+GGG | + | chr5_4:34804725-34804744 | Msa0848860:CDS | 50.0% | |
| ACCCTTTGCACGTATGAACC+AGG | - | chr5_4:34804729-34804748 | None:intergenic | 50.0% | |
| GTCCTCAGACACATGCTGTT+TGG | + | chr5_4:34804938-34804957 | Msa0848860:intron | 50.0% | |
| ! | CCTCAGACACATGCTGTTTG+GGG | + | chr5_4:34804940-34804959 | Msa0848860:intron | 50.0% |
| ! | CTCAGACACATGCTGTTTGG+GGG | + | chr5_4:34804941-34804960 | Msa0848860:intron | 50.0% |
| AGGAGACAGGAACATACGTC+TGG | - | chr5_4:34804992-34805011 | None:intergenic | 50.0% | |
| GGGGGCTATAGAGTTTGTGA+GGG | + | chr5_4:34805237-34805256 | Msa0848860:CDS | 50.0% | |
| ATTCTCTCAAGGAGAAGGCC+TGG | + | chr5_4:34805514-34805533 | Msa0848860:CDS | 50.0% | |
| ! | TTGAAGCTTGGTGGCATGGG+TGG | - | chr5_4:34804096-34804115 | None:intergenic | 55.0% |
| GTCCTTAGATCCCTCATGCC+TGG | + | chr5_4:34804708-34804727 | Msa0848860:CDS | 55.0% | |
| GCACGTATGAACCAGGCATG+AGG | - | chr5_4:34804722-34804741 | None:intergenic | 55.0% | |
| CCCCAAACAGCATGTGTCTG+AGG | - | chr5_4:34804943-34804962 | None:intergenic | 55.0% | |
| ! | AGACACATGCTGTTTGGGGG+TGG | + | chr5_4:34804944-34804963 | Msa0848860:intron | 55.0% |
| GGGGGGCTATAGAGTTTGTG+AGG | + | chr5_4:34805236-34805255 | Msa0848860:CDS | 55.0% | |
| GCTGTTTGGGGGTGGTCGCA+CGG | + | chr5_4:34804952-34804971 | Msa0848860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 34803058 | 34806154 | 34803058 | ID=Msa0848860;Name=Msa0848860 |
| chr5_4 | mRNA | 34803058 | 34806154 | 34803058 | ID=Msa0848860-mRNA-1;Parent=Msa0848860;Name=Msa0848860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=273|1|1|1|0.2|0.33|6|188|368 |
| chr5_4 | exon | 34803058 | 34803233 | 34803058 | ID=Msa0848860-mRNA-1:exon:11739;Parent=Msa0848860-mRNA-1 |
| chr5_4 | exon | 34803812 | 34803932 | 34803812 | ID=Msa0848860-mRNA-1:exon:11740;Parent=Msa0848860-mRNA-1 |
| chr5_4 | exon | 34804090 | 34804363 | 34804090 | ID=Msa0848860-mRNA-1:exon:11741;Parent=Msa0848860-mRNA-1 |
| chr5_4 | exon | 34804457 | 34804746 | 34804457 | ID=Msa0848860-mRNA-1:exon:11742;Parent=Msa0848860-mRNA-1 |
| chr5_4 | exon | 34805214 | 34805642 | 34805214 | ID=Msa0848860-mRNA-1:exon:11743;Parent=Msa0848860-mRNA-1 |
| chr5_4 | exon | 34805877 | 34806154 | 34805877 | ID=Msa0848860-mRNA-1:exon:11744;Parent=Msa0848860-mRNA-1 |
| chr5_4 | five_prime_UTR | 34803058 | 34803233 | 34803058 | ID=Msa0848860-mRNA-1:five_prime_utr;Parent=Msa0848860-mRNA-1 |
| chr5_4 | five_prime_UTR | 34803812 | 34803908 | 34803812 | ID=Msa0848860-mRNA-1:five_prime_utr;Parent=Msa0848860-mRNA-1 |
| chr5_4 | CDS | 34803909 | 34803932 | 34803909 | ID=Msa0848860-mRNA-1:cds;Parent=Msa0848860-mRNA-1 |
| chr5_4 | CDS | 34804090 | 34804363 | 34804090 | ID=Msa0848860-mRNA-1:cds;Parent=Msa0848860-mRNA-1 |
| chr5_4 | CDS | 34804457 | 34804746 | 34804457 | ID=Msa0848860-mRNA-1:cds;Parent=Msa0848860-mRNA-1 |
| chr5_4 | CDS | 34805214 | 34805642 | 34805214 | ID=Msa0848860-mRNA-1:cds;Parent=Msa0848860-mRNA-1 |
| chr5_4 | CDS | 34805877 | 34805966 | 34805877 | ID=Msa0848860-mRNA-1:cds;Parent=Msa0848860-mRNA-1 |
| chr5_4 | three_prime_UTR | 34805967 | 34806154 | 34805967 | ID=Msa0848860-mRNA-1:three_prime_utr;Parent=Msa0848860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
