AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688880 MtrunA17_Chr2g0307851 95.224 670 29 1 1 667 1 670 0.0 1236
Msa0688880 MtrunA17_Chr4g0061881 78.814 590 124 1 78 666 68 657 0.0 969
Msa0688880 MtrunA17_Chr4g0061841 52.412 311 64 5 152 462 8 234 7.35e-95 292
Msa0688880 MtrunA17_Chr4g0073611 49.196 311 112 6 153 458 2 271 3.55e-89 280
Msa0688880 MtrunA17_Chr5g0408331 43.750 368 117 6 80 446 34 312 4.30e-88 278
Msa0688880 MtrunA17_Chr5g0437391 44.974 378 118 12 199 569 6 300 4.84e-82 263
Msa0688880 MtrunA17_Chr4g0076561 63.636 209 40 2 347 555 14 186 1.62e-79 250
Msa0688880 MtrunA17_Chr4g0069071 39.687 383 198 11 139 510 11 371 2.19e-68 228
Msa0688880 MtrunA17_Chr8g0344851 62.778 180 56 5 428 604 1 172 2.47e-58 194
Msa0688880 MtrunA17_Chr4g0061831 85.437 103 15 0 490 592 9 111 1.08e-53 179
Msa0688880 MtrunA17_Chr4g0064001 51.724 203 72 6 453 643 4 192 2.43e-48 169
Msa0688880 MtrunA17_Chr4g0076571 69.072 97 30 0 149 245 2 98 2.65e-44 153
Msa0688880 MtrunA17_Chr8g0344821 64.815 108 36 1 494 601 5 110 6.93e-36 130
Msa0688880 MtrunA17_Chr5g0437441 56.190 105 40 3 105 206 1 102 1.66e-28 109
Msa0688880 MtrunA17_Chr8g0344831 51.181 127 49 2 323 449 5 118 1.32e-26 105
Msa0688880 MtrunA17_Chr4g0073621 75.758 66 14 1 542 605 1 66 2.39e-25 99.8
Msa0688880 MtrunA17_Chr5g0408341 60.494 81 32 0 547 627 1 81 9.91e-25 100
Msa0688880 MtrunA17_Chr5g0437451 82.353 51 9 0 544 594 98 148 1.20e-21 92.0
Msa0688880 MtrunA17_Chr4g0069081 50.000 86 43 0 523 608 2 87 6.09e-21 88.6
Msa0688880 MtrunA17_Chr4g0063991 57.143 84 24 2 345 428 2 73 1.22e-19 84.0
Msa0688880 MtrunA17_Chr4g0063981 45.070 71 29 2 182 252 1 61 3.44e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688880 AT1G73990.1 69.184 662 180 6 15 667 30 676 0.0 910
Msa0688880 AT1G73990.2 69.759 539 139 6 15 544 30 553 0.0 753

Find 177 sgRNAs with CRISPR-Local

Find 682 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTATGATCCTCGAATTTC+TGG 0.156422 4_4:+55166534 Msa0688880:CDS
AAATGGACACTTGGAATTTC+AGG 0.199983 4_4:+55170598 Msa0688880:CDS
ATTGTATATCCATTATTAAA+TGG 0.217202 4_4:-55175759 None:intergenic
GTCTTCTTCTTGAATGAGTT+TGG 0.227850 4_4:-55165116 None:intergenic
TCTTCTTCTTGAATGAGTTT+GGG 0.270184 4_4:-55165115 None:intergenic
CATACATTAAATTTGATATA+AGG 0.278743 4_4:-55169253 None:intergenic
TTTGAATTTGAACCTATTAC+TGG 0.285214 4_4:+55165249 Msa0688880:CDS
GCAGAAAGTCTTACGTTAAC+TGG 0.296101 4_4:+55172163 Msa0688880:CDS
CTTACTCGCCCATTTAATAA+TGG 0.310770 4_4:+55175750 Msa0688880:three_prime_UTR
ATATGCATTCTGTGCAGATT+TGG 0.331313 4_4:-55174882 None:intergenic
GTAGAGGGAGGTGTGGAGGG+GGG 0.333560 4_4:-55165016 None:intergenic
AACTGCCAACGGTCGATTAC+GGG 0.340728 4_4:+55169660 Msa0688880:CDS
CATGGTTTGGTTGATGCTAT+TGG 0.357229 4_4:+55175098 Msa0688880:CDS
GCAAATAGCTCTGCTTCATC+TGG 0.360163 4_4:-55174860 None:intergenic
AAACTGCCAACGGTCGATTA+CGG 0.362185 4_4:+55169659 Msa0688880:CDS
GACAAAATGGGGTTGTCGTT+GGG 0.368893 4_4:-55175451 None:intergenic
ACGTGCTTTCAACTCCGGTT+AGG 0.374016 4_4:-55175342 None:intergenic
CACAGTTTAAACTATCAATA+TGG 0.374090 4_4:-55166566 None:intergenic
AAATTCCTCCAACCAGTAAT+AGG 0.377007 4_4:-55165261 None:intergenic
GGCGGTAGAGGGAGGTGTGG+AGG 0.383098 4_4:-55165020 None:intergenic
TAGAGGGAGGTGTGGAGGGG+GGG 0.389232 4_4:-55165015 None:intergenic
AAAACCAGTCATTGCTTCAA+TGG 0.389485 4_4:+55172084 Msa0688880:CDS
GGTAGAGGGAGGTGTGGAGG+GGG 0.392523 4_4:-55165017 None:intergenic
CTTACGTTAACTGGTTCAAT+TGG 0.395398 4_4:+55172172 Msa0688880:CDS
AGGTAGCACAGGGTAGAGTT+TGG 0.398928 4_4:+55175054 Msa0688880:CDS
TACAATGAAGCTTCGTGGCC+AGG 0.399382 4_4:+55165347 Msa0688880:CDS
ATTGAATGAAATAAAATTAA+CGG 0.399687 4_4:-55164948 None:intergenic
AATGAATTATTAAAATCTAC+AGG 0.400136 4_4:-55175498 None:intergenic
ATAGCCATCATCCGGGCCTC+AGG 0.402955 4_4:+55170634 Msa0688880:CDS
TTGTATATCCATTATTAAAT+GGG 0.404479 4_4:-55175758 None:intergenic
AGGGAGCATTAGTCGAGTTA+AGG 0.410229 4_4:+55170654 Msa0688880:CDS
CTGTTCGTCCTGAGGTATAT+TGG 0.410992 4_4:-55175159 None:intergenic
TTCAAATTCAAATTCTCCAC+TGG 0.413968 4_4:-55165238 None:intergenic
TTGGAGGAATTTCGTCGTTA+AGG 0.417101 4_4:+55165272 Msa0688880:CDS
ATTGAGAACTTTATAAATGA+AGG 0.419440 4_4:+55169197 Msa0688880:CDS
AGATGCAGCATCACATGGTT+TGG 0.425370 4_4:+55175085 Msa0688880:CDS
CGTGCTTTCAACTCCGGTTA+GGG 0.429338 4_4:-55175341 None:intergenic
AATACTCCCGGGTTAGGAAA+TGG 0.431438 4_4:+55170581 Msa0688880:CDS
CACGTTGAAGGAACTGCTAC+AGG 0.432578 4_4:+55175360 Msa0688880:CDS
CCTATGATCCTCGAATTTCT+GGG 0.434964 4_4:+55166535 Msa0688880:CDS
CGGTAGAGGGAGGTGTGGAG+GGG 0.441743 4_4:-55165018 None:intergenic
TGTCTCATCTGGACTTCTGT+AGG 0.442944 4_4:+55175706 Msa0688880:three_prime_UTR
AGGTAGAGAGGGACTAGATC+TGG 0.444443 4_4:-55175293 None:intergenic
GCGGTAGAGGGAGGTGTGGA+GGG 0.446200 4_4:-55165019 None:intergenic
GTCTCATCTGGACTTCTGTA+GGG 0.448382 4_4:+55175707 Msa0688880:three_prime_UTR
ACAGGAAATACTCCCGGGTT+AGG 0.449319 4_4:+55170575 Msa0688880:intron
ACAATTACATGCATTTCTCT+TGG 0.456531 4_4:+55175777 Msa0688880:three_prime_UTR
CAATATACCTCAGGACGAAC+AGG 0.460640 4_4:+55175160 Msa0688880:CDS
AAGAACTGATAGCCATCATC+CGG 0.468277 4_4:+55170626 Msa0688880:CDS
TATGCCTGGATTGTCTCATC+TGG 0.468428 4_4:+55175695 Msa0688880:three_prime_UTR
CCCAGAAATTCGAGGATCAT+AGG 0.470601 4_4:-55166535 None:intergenic
TAGATAATATCTATACAAAC+TGG 0.471417 4_4:+55169057 Msa0688880:CDS
GGGAGCATTAGTCGAGTTAA+GGG 0.472364 4_4:+55170655 Msa0688880:CDS
TTAGGATGTGGAGAGAAATT+CGG 0.477457 4_4:+55172047 Msa0688880:intron
GAGGCAAGAGCGTCACCTCC+AGG 0.482340 4_4:-55171366 None:intergenic
CAGTTAAGTGTCTCTAGCTC+AGG 0.482587 4_4:+55170679 Msa0688880:CDS
TTAAAATCTACAGGGAACTA+AGG 0.483269 4_4:-55175489 None:intergenic
TGACAAAATGGGGTTGTCGT+TGG 0.483685 4_4:-55175452 None:intergenic
GCAGGTTACTGACATGTTGA+AGG 0.485150 4_4:+55169610 Msa0688880:intron
AGATGCTCATTGCGTATCCA+TGG 0.485437 4_4:+55165298 Msa0688880:CDS
CAAGTGTCCATTTCCTAACC+CGG 0.488540 4_4:-55170588 None:intergenic
GGCGCACGGAGTTCCCTAAC+CGG 0.489745 4_4:+55175328 Msa0688880:CDS
GACTAATGCTCCCTGAGGCC+CGG 0.494942 4_4:-55170645 None:intergenic
TTGAACCTATTACTGGTTGG+AGG 0.497114 4_4:+55165256 Msa0688880:CDS
TTAATAAAGAAATCATATCA+AGG 0.499995 4_4:+55173644 Msa0688880:CDS
CTTCAACGTGCTTTCAACTC+CGG 0.501193 4_4:-55175347 None:intergenic
ATAAGGTGTTGCGGCGGTAG+AGG 0.501582 4_4:-55165032 None:intergenic
AGTTTGGGGAAGAGAGTGAA+AGG 0.501583 4_4:-55165100 None:intergenic
CAAGATGGAGGAGGTAGCAC+AGG 0.504381 4_4:+55175043 Msa0688880:CDS
GCTCCCTGAGGCCCGGATGA+TGG 0.505280 4_4:-55170638 None:intergenic
GCGAAACTGTATGAGAAGAT+TGG 0.507637 4_4:+55173619 Msa0688880:CDS
TTGCCAATCCTTTCCACTTG+CGG 0.509346 4_4:-55168960 None:intergenic
CGTGCGCCTAATAAAATCTC+AGG 0.511141 4_4:-55175313 None:intergenic
GTTCTTACAATGAAGCTTCG+TGG 0.512091 4_4:+55165342 Msa0688880:CDS
TTTCTGATGGAGTTCAAGCT+AGG 0.514681 4_4:+55175392 Msa0688880:CDS
AGTGAAGAGTAGATTCTCTC+CGG 0.517158 4_4:+55166470 Msa0688880:CDS
AGAACGTACAGTCATAGATC+TGG 0.517426 4_4:-55174933 None:intergenic
TGATAGTTTAAACTGTGGGT+GGG 0.519618 4_4:+55166572 Msa0688880:CDS
GATAGTTTAAACTGTGGGTG+GGG 0.519973 4_4:+55166573 Msa0688880:CDS
GGAGGATACTACATGGCAAT+GGG 0.520535 4_4:+55172124 Msa0688880:CDS
TGATGGAGTTCAAGCTAGGA+TGG 0.520543 4_4:+55175396 Msa0688880:CDS
TATTGCCATAGCAAAATTGA+AGG 0.523316 4_4:+55175136 Msa0688880:CDS
CTCAACCTAGGTGGACAAGA+TGG 0.525487 4_4:+55175028 Msa0688880:intron
GGAAGAATCAAAAGCGCGAA+GGG 0.529032 4_4:-55165145 None:intergenic
ATAGTAAGAATACATATGCC+TGG 0.529719 4_4:+55175681 Msa0688880:three_prime_UTR
ATTATCAGAATTGACAGTCC+TGG 0.529856 4_4:+55171348 Msa0688880:CDS
TTGATAGTTTAAACTGTGGG+TGG 0.533991 4_4:+55166571 Msa0688880:CDS
GGTTTGGTTGATGCTATTGG+TGG 0.533991 4_4:+55175101 Msa0688880:CDS
AATTTGAACCTATTACTGGT+TGG 0.537190 4_4:+55165253 Msa0688880:CDS
TAATATCTATACAAACTGGC+TGG 0.538238 4_4:+55169061 Msa0688880:CDS
CGGAGTTGAAAGCACGTTGA+AGG 0.539872 4_4:+55175348 Msa0688880:CDS
ATTGGCAAGTACAAAAGTGC+AGG 0.541412 4_4:+55168975 Msa0688880:CDS
GGTTCAATTGGAGTGGTCAC+AGG 0.541619 4_4:+55172184 Msa0688880:CDS
CGGGTTAGGAAATGGACACT+TGG 0.542638 4_4:+55170589 Msa0688880:CDS
AAAGAAAAGTAAGCACTTGG+AGG 0.543239 4_4:-55167459 None:intergenic
GAACCGCAAGTGGAAAGGAT+TGG 0.547009 4_4:+55168957 Msa0688880:CDS
TCTTCTCATACAGTTTCGCT+AGG 0.547877 4_4:-55173615 None:intergenic
AACAAAGAAAAGTAAGCACT+TGG 0.548235 4_4:-55167462 None:intergenic
CTTCTTCTTGAATGAGTTTG+GGG 0.549616 4_4:-55165114 None:intergenic
GGAGTTCAAGCTAGGATGGA+TGG 0.550073 4_4:+55175400 Msa0688880:CDS
AAGTGACGATGATGATGATA+AGG 0.550787 4_4:-55165049 None:intergenic
TTCTACCCGTAATCGACCGT+TGG 0.552327 4_4:-55169665 None:intergenic
CCTTTACGAACACGTTCCCA+TGG 0.553283 4_4:-55165315 None:intergenic
ATTGAAGGCCAATATACCTC+AGG 0.554095 4_4:+55175151 Msa0688880:CDS
CCATGGGAACGTGTTCGTAA+AGG 0.554425 4_4:+55165315 Msa0688880:CDS
TTGAACACAGGAAATACTCC+CGG 0.555818 4_4:+55170569 Msa0688880:intron
GCTTGTAGGAAAATTTGTTG+TGG 0.558144 4_4:+55167371 Msa0688880:intron
ATATTGATAGTTTAAACTGT+GGG 0.562161 4_4:+55166568 Msa0688880:CDS
AATAAAATCTCAGGTAGAGA+GGG 0.563178 4_4:-55175304 None:intergenic
TCAGCCATTGAAGCAATGAC+TGG 0.563949 4_4:-55172088 None:intergenic
TAATAAAGAAATCATATCAA+GGG 0.565337 4_4:+55173645 Msa0688880:CDS
TCAAATTCAAATTCTCCACT+GGG 0.565424 4_4:-55165237 None:intergenic
AAATTTAATGTATGATGATG+AGG 0.565513 4_4:+55169262 Msa0688880:CDS
TGGAGGATACTACATGGCAA+TGG 0.566417 4_4:+55172123 Msa0688880:CDS
TACCAGAACTTACAAATCAG+AGG 0.568309 4_4:-55171385 None:intergenic
AATAGGAGTTGAACCGCAAG+TGG 0.570611 4_4:+55168947 Msa0688880:CDS
TAAGGTGTTGCGGCGGTAGA+GGG 0.571866 4_4:-55165031 None:intergenic
CAGCTTACCTCTGAGGAATG+AGG 0.572547 4_4:-55167502 None:intergenic
CATTGCTTCAATGGCTGATG+TGG 0.572578 4_4:+55172093 Msa0688880:CDS
AAGAAAAGTAAGCACTTGGA+GGG 0.573901 4_4:-55167458 None:intergenic
TGAACACAGGAAATACTCCC+GGG 0.579067 4_4:+55170570 Msa0688880:intron
GAGTTGAACCGCAAGTGGAA+AGG 0.579458 4_4:+55168952 Msa0688880:CDS
TAGCCATCATCCGGGCCTCA+GGG 0.580655 4_4:+55170635 Msa0688880:CDS
GTTAACTGGTTCAATTGGAG+TGG 0.581126 4_4:+55172177 Msa0688880:CDS
AAGTCCAGATGAGACAATCC+AGG 0.583833 4_4:-55175699 None:intergenic
AAGTGTCCATTTCCTAACCC+GGG 0.584075 4_4:-55170587 None:intergenic
CGTTGAAGGAACTGCTACAG+GGG 0.585808 4_4:+55175362 Msa0688880:CDS
CTATGGCAATAGCTCGGGAA+AGG 0.585943 4_4:-55175124 None:intergenic
TAATAAAATCTCAGGTAGAG+AGG 0.589084 4_4:-55175305 None:intergenic
GAGAAGATTCGCACTGTCAG+AGG 0.592913 4_4:+55170724 Msa0688880:CDS
GATGCTCATTGCGTATCCAT+GGG 0.597452 4_4:+55165299 Msa0688880:CDS
GTTGATAAGCTGAAAGAAGA+GGG 0.598500 4_4:+55169230 Msa0688880:CDS
AGATAGACCCCAGAAATTCG+AGG 0.602106 4_4:-55166543 None:intergenic
ATGGCTGATGTGGCAGCAAG+TGG 0.602616 4_4:+55172103 Msa0688880:CDS
GTGAAGAGTAGATTCTCTCC+GGG 0.602919 4_4:+55166471 Msa0688880:CDS
CATATTGATAGTTTAAACTG+TGG 0.604388 4_4:+55166567 Msa0688880:CDS
ATGTACGTACAGTGATTGCG+AGG 0.604584 4_4:-55175617 None:intergenic
GATAAAGTCTCTTCTGCCAA+AGG 0.606342 4_4:+55169083 Msa0688880:CDS
TGCGGCGGTAGAGGGAGGTG+TGG 0.607201 4_4:-55165023 None:intergenic
GAAAGACCAGCTTACCTCTG+AGG 0.608420 4_4:-55167509 None:intergenic
GACATGTTGAAGGAGAGACT+TGG 0.612900 4_4:+55169620 Msa0688880:CDS
GGTGTTGCGGCGGTAGAGGG+AGG 0.613375 4_4:-55165028 None:intergenic
TCTCATCTGGACTTCTGTAG+GGG 0.617749 4_4:+55175708 Msa0688880:three_prime_UTR
ACGTTGAAGGAACTGCTACA+GGG 0.618985 4_4:+55175361 Msa0688880:CDS
AGTTGATAAGCTGAAAGAAG+AGG 0.622772 4_4:+55169229 Msa0688880:CDS
AATAAAGAAATCATATCAAG+GGG 0.623523 4_4:+55173646 Msa0688880:CDS
TAACTAACCTGTTCGTCCTG+AGG 0.625627 4_4:-55175167 None:intergenic
GGTAAAGATGCAGCATCACA+TGG 0.630228 4_4:+55175080 Msa0688880:CDS
TGGACACTTGGAATTTCAGG+TGG 0.630389 4_4:+55170601 Msa0688880:CDS
AGGAAGAATCAAAAGCGCGA+AGG 0.632352 4_4:-55165146 None:intergenic
AGAACTGATAGCCATCATCC+GGG 0.633122 4_4:+55170627 Msa0688880:CDS
AGTGAAGTGATGAGCTGACA+AGG 0.634549 4_4:-55164904 None:intergenic
TAGCTCAGGCATCACTGCGG+AGG 0.634924 4_4:+55170693 Msa0688880:CDS
AGAAAAGTAAGCACTTGGAG+GGG 0.636043 4_4:-55167457 None:intergenic
GTAAAGTAGAAGAAATTCGA+AGG 0.637376 4_4:+55166595 Msa0688880:CDS
AGCAAGTGGAGGATACTACA+TGG 0.638303 4_4:+55172117 Msa0688880:CDS
CTAGGTGGACAAGATGGAGG+AGG 0.639098 4_4:+55175034 Msa0688880:intron
GCACAGGGTAGAGTTTGGAC+TGG 0.644303 4_4:+55175059 Msa0688880:CDS
GCTATGCCAGGTAACTGTTG+TGG 0.645235 4_4:+55175264 Msa0688880:intron
AACCTAGGTGGACAAGATGG+AGG 0.648031 4_4:+55175031 Msa0688880:intron
CTATGATCCTCGAATTTCTG+GGG 0.650704 4_4:+55166536 Msa0688880:CDS
ATTTGAGGTAGAGAAAGTCC+CGG 0.652101 4_4:-55166489 None:intergenic
ATGAATTATTAAAATCTACA+GGG 0.660702 4_4:-55175497 None:intergenic
GCTGATGTGGCAGCAAGTGG+AGG 0.665663 4_4:+55172106 Msa0688880:CDS
ATCAGAATTGACAGTCCTGG+AGG 0.668918 4_4:+55171351 Msa0688880:CDS
TGTACGTACAGTGATTGCGA+GGG 0.672180 4_4:-55175616 None:intergenic
ATATAAACAATTTCGAGACA+AGG 0.676264 4_4:+55174901 Msa0688880:CDS
AAGATGGAGGAGGTAGCACA+GGG 0.676774 4_4:+55175044 Msa0688880:CDS
TCTCTTCACATGCACACGCG+AGG 0.678266 4_4:-55167428 None:intergenic
GGCTGACATAAACTAAGACG+TGG 0.702100 4_4:+55164870 None:intergenic
GTACGTACAGTGATTGCGAG+GGG 0.704083 4_4:-55175615 None:intergenic
ATGATGATGATAAGGTGTTG+CGG 0.714238 4_4:-55165041 None:intergenic
GCTGATGAAGATTATCCCAG+TGG 0.718921 4_4:+55165222 Msa0688880:CDS
GTTCAAGCCTCATTCCTCAG+AGG 0.722696 4_4:+55167495 Msa0688880:CDS
AACTCGACTAATGCTCCCTG+AGG 0.724123 4_4:-55170650 None:intergenic
CTCTAGCTCAGGCATCACTG+CGG 0.730860 4_4:+55170690 Msa0688880:CDS
ATGATGATAAGGTGTTGCGG+CGG 0.786339 4_4:-55165038 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATGAAATAAAATTAA+CGG - chr4_4:55164951-55164970 None:intergenic 10.0%
!!! CTTTATTTTATTTTGTTTAA+TGG - chr4_4:55165815-55165834 None:intergenic 10.0%
!! TTGACAAAAATAAAATAAAA+TGG + chr4_4:55168030-55168049 Msa0688880:intron 10.0%
!! TTAAACACTAAATATATAAA+AGG + chr4_4:55168071-55168090 Msa0688880:intron 10.0%
!! TAAACACTAAATATATAAAA+GGG + chr4_4:55168072-55168091 Msa0688880:intron 10.0%
!! TAAAATATTATAGATGTATA+TGG + chr4_4:55168711-55168730 Msa0688880:intron 10.0%
!!! TTTAATAATTTGATTTGTAT+TGG + chr4_4:55171447-55171466 Msa0688880:intron 10.0%
!! TATATTAATAATAATAGGTA+TGG - chr4_4:55173840-55173859 None:intergenic 10.0%
!! ACAAAAAAAAAAAAAATACA+AGG - chr4_4:55175554-55175573 None:intergenic 10.0%
!! TAATGTAATGTAAAAAAGTT+TGG + chr4_4:55165469-55165488 Msa0688880:intron 15.0%
!! AATGTAATGTAAAAAAGTTT+GGG + chr4_4:55165470-55165489 Msa0688880:intron 15.0%
!! AACATACTATATGTATATTT+GGG - chr4_4:55166387-55166406 None:intergenic 15.0%
!!! TTTACATTTTAGAGAAAATA+TGG + chr4_4:55167299-55167318 Msa0688880:intron 15.0%
!!! CAATAAATTACCTTTTTTTT+TGG + chr4_4:55167561-55167580 Msa0688880:intron 15.0%
!!! AAATTTTCCCATTATATTTT+AGG + chr4_4:55167887-55167906 Msa0688880:intron 15.0%
!!! GTGTTTTCAAATAAAAATTA+TGG + chr4_4:55167986-55168005 Msa0688880:intron 15.0%
!!! AATTTGAAACAACAATTAAA+AGG + chr4_4:55168101-55168120 Msa0688880:intron 15.0%
!!! TTGTTTTAAAGAGAAATTAT+TGG - chr4_4:55168492-55168511 None:intergenic 15.0%
!!! ACATCTATAATATTTTAGAA+AGG - chr4_4:55168708-55168727 None:intergenic 15.0%
!! CATACATTAAATTTGATATA+AGG - chr4_4:55169256-55169275 None:intergenic 15.0%
!! GAATATATATTAATAAAAGC+TGG - chr4_4:55169340-55169359 None:intergenic 15.0%
!! AAGATAAAATTGAAACTTTA+CGG - chr4_4:55169786-55169805 None:intergenic 15.0%
!!! AATTTTACAATTAGTGTATA+CGG + chr4_4:55170321-55170340 Msa0688880:intron 15.0%
!!! ATCATCTTGATATTTTATTT+TGG - chr4_4:55170537-55170556 None:intergenic 15.0%
!! AATATTATATTGGTATTTAC+CGG + chr4_4:55170823-55170842 Msa0688880:intron 15.0%
!!! ATATGTTTATTTATTTTCTC+TGG - chr4_4:55171055-55171074 None:intergenic 15.0%
!! ATTATAATAATTAGAAGTTG+TGG - chr4_4:55171246-55171265 None:intergenic 15.0%
!!! TTTTGAAAATAAAACTAACA+TGG - chr4_4:55171421-55171440 None:intergenic 15.0%
!!! CAAAAAAATTTGTCAAATTT+TGG + chr4_4:55171678-55171697 Msa0688880:intron 15.0%
!!! AATCTAACTAAAAAAAGTAT+AGG + chr4_4:55172265-55172284 Msa0688880:intron 15.0%
!! TTAATAAAGAAATCATATCA+AGG + chr4_4:55173644-55173663 Msa0688880:CDS 15.0%
!! TAATAAAGAAATCATATCAA+GGG + chr4_4:55173645-55173664 Msa0688880:CDS 15.0%
!!! TGAAACTCAAATTTTAAATT+TGG - chr4_4:55173897-55173916 None:intergenic 15.0%
!! ATTATGTAAAACTTAATTCA+TGG - chr4_4:55174209-55174228 None:intergenic 15.0%
!!! AATCTTCATAATCAATTTTT+TGG + chr4_4:55174256-55174275 Msa0688880:intron 15.0%
!! TTAATAATGGTATGAATTAT+TGG + chr4_4:55174586-55174605 Msa0688880:intron 15.0%
!! TAATAATGGTATGAATTATT+GGG + chr4_4:55174587-55174606 Msa0688880:intron 15.0%
!!! TGTTTTTAATCTTTAATTGA+CGG + chr4_4:55174802-55174821 Msa0688880:intron 15.0%
!!! TCTTTTATAATTGACAAAAT+GGG - chr4_4:55175466-55175485 None:intergenic 15.0%
!!! ATCTTTTATAATTGACAAAA+TGG - chr4_4:55175467-55175486 None:intergenic 15.0%
!! ATGAATTATTAAAATCTACA+GGG - chr4_4:55175500-55175519 None:intergenic 15.0%
!! AATGAATTATTAAAATCTAC+AGG - chr4_4:55175501-55175520 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTTGTTCG+AGG + chr4_4:55175557-55175576 Msa0688880:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTTTGTTCGA+GGG + chr4_4:55175558-55175577 Msa0688880:three_prime_UTR 15.0%
!! TTGTATATCCATTATTAAAT+GGG - chr4_4:55175761-55175780 None:intergenic 15.0%
!! ATTGTATATCCATTATTAAA+TGG - chr4_4:55175762-55175781 None:intergenic 15.0%
!!! AAGAAATAGTTTGAGTTTAA+CGG - chr4_4:55165636-55165655 None:intergenic 20.0%
!! TTATGAAAATAAGCTGAATA+TGG + chr4_4:55165892-55165911 Msa0688880:intron 20.0%
!!! GAATGTGATTAAATTGTTTT+AGG + chr4_4:55166090-55166109 Msa0688880:intron 20.0%
!! GTATGATTATAATTGAGAAT+GGG - chr4_4:55166319-55166338 None:intergenic 20.0%
!! AGTATGATTATAATTGAGAA+TGG - chr4_4:55166320-55166339 None:intergenic 20.0%
!! GAACATACTATATGTATATT+TGG - chr4_4:55166388-55166407 None:intergenic 20.0%
!!! ATATTGATAGTTTAAACTGT+GGG + chr4_4:55166568-55166587 Msa0688880:CDS 20.0%
!! ACATCATATATTATGCAAAA+AGG - chr4_4:55166693-55166712 None:intergenic 20.0%
!! AATATATCTTCTGTTGTTAT+AGG + chr4_4:55167020-55167039 Msa0688880:intron 20.0%
!! ATATATCTTCTGTTGTTATA+GGG + chr4_4:55167021-55167040 Msa0688880:intron 20.0%
!!! TTTTGTTTCGTTTTTACTTT+GGG - chr4_4:55167779-55167798 None:intergenic 20.0%
!!! ATTTTGTTTCGTTTTTACTT+TGG - chr4_4:55167780-55167799 None:intergenic 20.0%
!! GAAATGTCCTAAAATATAAT+GGG - chr4_4:55167897-55167916 None:intergenic 20.0%
!! AGAAATGTCCTAAAATATAA+TGG - chr4_4:55167898-55167917 None:intergenic 20.0%
!!! TTCATTTTTCTCTCTTAATT+AGG - chr4_4:55168151-55168170 None:intergenic 20.0%
!! AAAAATGAAGTTCAGTATTT+AGG + chr4_4:55168162-55168181 Msa0688880:intron 20.0%
!! AATTTGTCTGAAAGAAAAAT+AGG - chr4_4:55168307-55168326 None:intergenic 20.0%
!! AAAACAACATAGTATTATGA+CGG + chr4_4:55168505-55168524 Msa0688880:intron 20.0%
!! CAAATAATTCCTTTATTGTT+TGG + chr4_4:55168768-55168787 Msa0688880:intron 20.0%
!!! AAACTTTTTCCAAACAATAA+AGG - chr4_4:55168780-55168799 None:intergenic 20.0%
!! AAAAGGTTTGATTAATAATC+TGG - chr4_4:55168837-55168856 None:intergenic 20.0%
!! CTGATGCTTAAAAATTTAAA+AGG - chr4_4:55168854-55168873 None:intergenic 20.0%
!! TAGATAATATCTATACAAAC+TGG + chr4_4:55169057-55169076 Msa0688880:CDS 20.0%
!! ATTGAGAACTTTATAAATGA+AGG + chr4_4:55169197-55169216 Msa0688880:CDS 20.0%
!!! AAATTTAATGTATGATGATG+AGG + chr4_4:55169262-55169281 Msa0688880:CDS 20.0%
!! TAAAAACAATACATTCATAC+AGG - chr4_4:55169451-55169470 None:intergenic 20.0%
!! AGAATAGATTGCAATTAAAT+AGG + chr4_4:55169557-55169576 Msa0688880:intron 20.0%
!! GAATAGATTGCAATTAAATA+GGG + chr4_4:55169558-55169577 Msa0688880:intron 20.0%
!!! AAGTATATGTGTTTTATTTG+TGG + chr4_4:55169718-55169737 Msa0688880:intron 20.0%
!!! AGCTTTAGAAATAACTAATT+TGG + chr4_4:55169753-55169772 Msa0688880:intron 20.0%
!!! GCTTTAGAAATAACTAATTT+GGG + chr4_4:55169754-55169773 Msa0688880:intron 20.0%
!! TAACAATCAACAGAAATTAA+TGG - chr4_4:55169956-55169975 None:intergenic 20.0%
!! CATTATTAGGAATAAAAGTT+GGG - chr4_4:55170491-55170510 None:intergenic 20.0%
!! AAAATATCAAGATGATTTCT+TGG + chr4_4:55170541-55170560 Msa0688880:intron 20.0%
!! TTTAATGATAACTGCTTTAA+TGG - chr4_4:55170772-55170791 None:intergenic 20.0%
!!! TATTTATTTTCTCTGGATTT+GGG - chr4_4:55171048-55171067 None:intergenic 20.0%
!!! TTATTTATTTTCTCTGGATT+TGG - chr4_4:55171049-55171068 None:intergenic 20.0%
!!! TTGTATTGGTTTGAAATTAT+TGG + chr4_4:55171461-55171480 Msa0688880:intron 20.0%
!!! CAAAACATTATTTTGTATCA+CGG + chr4_4:55172021-55172040 Msa0688880:intron 20.0%
!! AAAATCATAAATCTTTGGAT+TGG + chr4_4:55172509-55172528 Msa0688880:intron 20.0%
!!! TATTAGTGATGTATTTTAGA+GGG - chr4_4:55172592-55172611 None:intergenic 20.0%
!!! TTATTAGTGATGTATTTTAG+AGG - chr4_4:55172593-55172612 None:intergenic 20.0%
!!! CAACAATAATTTTTCTTCAT+TGG - chr4_4:55172755-55172774 None:intergenic 20.0%
!! GTAAAAAACATCATTTATGA+TGG + chr4_4:55172910-55172929 Msa0688880:intron 20.0%
!! TCAAAATCATTTCCAATAAA+AGG + chr4_4:55173210-55173229 Msa0688880:intron 20.0%
!!! TAAATACTTCTTCCTTTTAT+TGG - chr4_4:55173225-55173244 None:intergenic 20.0%
!!! AAAGGAAGAAGTATTTAAAA+AGG + chr4_4:55173228-55173247 Msa0688880:intron 20.0%
!!! TTTTCCAAAAACAATAATGT+AGG + chr4_4:55173309-55173328 Msa0688880:intron 20.0%
!!! ATGATATAACATTTTTCTGT+AGG + chr4_4:55173583-55173602 Msa0688880:intron 20.0%
!! AATAAAGAAATCATATCAAG+GGG + chr4_4:55173646-55173665 Msa0688880:CDS 20.0%
!! AAGAAGTTATGCTAAAATAT+GGG + chr4_4:55173916-55173935 Msa0688880:intron 20.0%
!!! ATACATGATGGAATTTTTAA+CGG - chr4_4:55174660-55174679 None:intergenic 20.0%
!! AAAGATTAAAAACATGTAAG+TGG - chr4_4:55174796-55174815 None:intergenic 20.0%
!!! CTTTTATAATTGACAAAATG+GGG - chr4_4:55175465-55175484 None:intergenic 20.0%
!!! AATCACTTTTTCTTCGATTT+TGG - chr4_4:55165178-55165197 None:intergenic 25.0%
! TTTGAATTTGAACCTATTAC+TGG + chr4_4:55165249-55165268 Msa0688880:CDS 25.0%
! CTCAAATATTTACTCAACAA+AGG - chr4_4:55165409-55165428 None:intergenic 25.0%
!!! TGTTTATGTTTGAGTTGAAT+TGG + chr4_4:55165437-55165456 Msa0688880:intron 25.0%
! GTAAAAAAGTTTGGGAAAAT+AGG + chr4_4:55165478-55165497 Msa0688880:intron 25.0%
!! ATTTTACACTAACATCCAAT+AGG - chr4_4:55165590-55165609 None:intergenic 25.0%
! CTAGTTTAATTAAGTGACAT+AGG + chr4_4:55165711-55165730 Msa0688880:intron 25.0%
!! TTATGTTGTTTATCCAAATC+AGG - chr4_4:55165737-55165756 None:intergenic 25.0%
! CAAAATAAGCCAATTCAAAT+AGG + chr4_4:55165991-55166010 Msa0688880:intron 25.0%
! ACATGGTAGTAAGATATAAT+TGG + chr4_4:55166015-55166034 Msa0688880:intron 25.0%
! TGTTCATATGATAAGCAATT+AGG - chr4_4:55166055-55166074 None:intergenic 25.0%
!!! TATGAACACTATTTCTAGAA+AGG + chr4_4:55166067-55166086 Msa0688880:intron 25.0%
!!! ATGAACACTATTTCTAGAAA+GGG + chr4_4:55166068-55166087 Msa0688880:intron 25.0%
!!! TCTGCTTTCATTTTTCAAAT+TGG + chr4_4:55166406-55166425 Msa0688880:intron 25.0%
! AAAAAATTCTCGCATATTTG+AGG - chr4_4:55166507-55166526 None:intergenic 25.0%
! CACAGTTTAAACTATCAATA+TGG - chr4_4:55166569-55166588 None:intergenic 25.0%
!! CATATTGATAGTTTAAACTG+TGG + chr4_4:55166567-55166586 Msa0688880:CDS 25.0%
! ATCTTGAACTTCAAAAAATC+AGG + chr4_4:55166621-55166640 Msa0688880:CDS 25.0%
! TGCATAATATATGATGTTGA+TGG + chr4_4:55166696-55166715 Msa0688880:intron 25.0%
! CTGTAGTTAGTAATTATTGA+TGG + chr4_4:55166797-55166816 Msa0688880:intron 25.0%
! AACAGAAGATATATTGCTTT+GGG - chr4_4:55167015-55167034 None:intergenic 25.0%
! TATATCTTCTGTTGTTATAG+GGG + chr4_4:55167022-55167041 Msa0688880:intron 25.0%
!! TGATGCATGTTTAATTTACA+TGG + chr4_4:55167048-55167067 Msa0688880:intron 25.0%
! AATACTTCTCGTATATCATT+TGG + chr4_4:55167121-55167140 Msa0688880:intron 25.0%
!!! TTTTTTTATCTCTGCTGAAA+TGG + chr4_4:55167177-55167196 Msa0688880:intron 25.0%
!! ATTCTTTTTCTTGACATGTA+GGG - chr4_4:55167404-55167423 None:intergenic 25.0%
!! TATTCTTTTTCTTGACATGT+AGG - chr4_4:55167405-55167424 None:intergenic 25.0%
!! TTGCATTGTTTAAAGTTTGA+CGG + chr4_4:55167538-55167557 Msa0688880:intron 25.0%
!!! TATTACACTTGCTTTTTATC+TGG + chr4_4:55167649-55167668 Msa0688880:intron 25.0%
! ACATTATACAATAGTTCATC+TGG - chr4_4:55167732-55167751 None:intergenic 25.0%
! GATGAACTATTGTATAATGT+AGG + chr4_4:55167732-55167751 Msa0688880:intron 25.0%
! GTAAAAACGAAACAAAATCA+TGG + chr4_4:55167782-55167801 Msa0688880:intron 25.0%
! TATTGAATTAGGAAAGCTTT+GGG - chr4_4:55168255-55168274 None:intergenic 25.0%
! GATGGAAAAAATATTACAAG+AGG - chr4_4:55168447-55168466 None:intergenic 25.0%
! ATAACGTTTGTACATAACTT+TGG + chr4_4:55168632-55168651 Msa0688880:intron 25.0%
!!! CTTTTTTGCCAATTTAAAAC+AGG + chr4_4:55169158-55169177 Msa0688880:intron 25.0%
!!! TTCCTTTTCCTGTTTTAAAT+TGG - chr4_4:55169169-55169188 None:intergenic 25.0%
!! GTATCTTATTTAGTGATTAG+TGG + chr4_4:55169379-55169398 Msa0688880:intron 25.0%
!!! TTTTAGTTGCTTCTTTATTG+TGG + chr4_4:55169466-55169485 Msa0688880:intron 25.0%
!! GTTGTATTCTTATTTATTGC+TGG + chr4_4:55169510-55169529 Msa0688880:intron 25.0%
! TGCAATTAAATAGGGTTATA+AGG + chr4_4:55169566-55169585 Msa0688880:intron 25.0%
! GAGAAATAGTCTAAATTACT+AGG - chr4_4:55169824-55169843 None:intergenic 25.0%
!! GAAAATGTATGTTTTCAGAA+TGG - chr4_4:55169899-55169918 None:intergenic 25.0%
! TGTTAATTAGATCTAAGTAG+CGG + chr4_4:55169971-55169990 Msa0688880:intron 25.0%
! ATAAAAGTTGGGTAAGAAAA+AGG - chr4_4:55170480-55170499 None:intergenic 25.0%
! GCATTATTAGGAATAAAAGT+TGG - chr4_4:55170492-55170511 None:intergenic 25.0%
!! TGTATTTTATTCACCAAAAG+GGG - chr4_4:55170514-55170533 None:intergenic 25.0%
!! GTGTATTTTATTCACCAAAA+GGG - chr4_4:55170515-55170534 None:intergenic 25.0%
!!! ATTGCTATTGTTTTTCTAGT+AGG + chr4_4:55170797-55170816 Msa0688880:intron 25.0%
!!! TTGCTATTGTTTTTCTAGTA+GGG + chr4_4:55170798-55170817 Msa0688880:intron 25.0%
! TAGTAGGGGAAATATTATAT+TGG + chr4_4:55170813-55170832 Msa0688880:intron 25.0%
!! TAAGATTAATGAGAAGCATA+GGG + chr4_4:55170852-55170871 Msa0688880:intron 25.0%
! TTTATGAGATCTATGAATCT+CGG + chr4_4:55171013-55171032 Msa0688880:intron 25.0%
! ATTACTAAAAGAGAATAGAC+AGG - chr4_4:55171174-55171193 None:intergenic 25.0%
!!! CTTAAATTTTTTTGACTCTG+AGG - chr4_4:55171322-55171341 None:intergenic 25.0%
! CTCAGAGTCAAAAAAATTTA+AGG + chr4_4:55171320-55171339 Msa0688880:intron 25.0%
! TGAAAATAAAACTAACATGG+AGG - chr4_4:55171418-55171437 None:intergenic 25.0%
!!! ATTGGTTTGAAATTATTGGT+TGG + chr4_4:55171465-55171484 Msa0688880:intron 25.0%
!!! TGTTTTTATTCCCCAAAATA+CGG + chr4_4:55171630-55171649 Msa0688880:intron 25.0%
!! ATAGTTAGTTACCGTATTTT+GGG - chr4_4:55171644-55171663 None:intergenic 25.0%
!! AATAGTTAGTTACCGTATTT+TGG - chr4_4:55171645-55171664 None:intergenic 25.0%
!! ATTGTTATCATTTTCAGTAG+AGG - chr4_4:55171705-55171724 None:intergenic 25.0%
! CTACTGAAAATGATAACAAT+TGG + chr4_4:55171705-55171724 Msa0688880:intron 25.0%
! AAAAGGGTAATAATTGCATT+TGG - chr4_4:55171821-55171840 None:intergenic 25.0%
! CAAATTTAACTGGACTATAA+GGG - chr4_4:55171907-55171926 None:intergenic 25.0%
! TCAAATTTAACTGGACTATA+AGG - chr4_4:55171908-55171927 None:intergenic 25.0%
! AGATGCATTTCAAATTTAAC+TGG - chr4_4:55171917-55171936 None:intergenic 25.0%
!! AGTTAAATTTGAAATGCATC+TGG + chr4_4:55171916-55171935 Msa0688880:intron 25.0%
! ATTAAAATCATTCATGCACA+TGG + chr4_4:55172292-55172311 Msa0688880:intron 25.0%
! TTTCTATGTTACAATCTACT+TGG + chr4_4:55172345-55172364 Msa0688880:intron 25.0%
!! ATGTTACTTATAGTCAAGAT+AGG + chr4_4:55172481-55172500 Msa0688880:intron 25.0%
!! TGTTACTTATAGTCAAGATA+GGG + chr4_4:55172482-55172501 Msa0688880:intron 25.0%
! GGATGAAAATCATAAATCTT+TGG + chr4_4:55172504-55172523 Msa0688880:intron 25.0%
!!! ATTAGTGATGTATTTTAGAG+GGG - chr4_4:55172591-55172610 None:intergenic 25.0%
! ACTTCAATTCATAATCCATA+AGG + chr4_4:55172623-55172642 Msa0688880:intron 25.0%
!! ATTTATGATGGAGATAAACA+TGG + chr4_4:55172922-55172941 Msa0688880:intron 25.0%
!! TTTATGATGGAGATAAACAT+GGG + chr4_4:55172923-55172942 Msa0688880:intron 25.0%
!! TTGCACAATCATATGATTTT+TGG - chr4_4:55173100-55173119 None:intergenic 25.0%
! TCGAATGAATAATTAGCATT+CGG - chr4_4:55173476-55173495 None:intergenic 25.0%
! CAAGAAGTTATGCTAAAATA+TGG + chr4_4:55173915-55173934 Msa0688880:intron 25.0%
! AATAATATACGTAGCAAGTT+TGG - chr4_4:55173981-55174000 None:intergenic 25.0%
!!! CTACGTATATTATTGATTTG+AGG + chr4_4:55173987-55174006 Msa0688880:intron 25.0%
! TTTGATGTAGTCAAAAAGTT+AGG - chr4_4:55174165-55174184 None:intergenic 25.0%
!! TGTTTCTTTCAAATTGCTTT+TGG + chr4_4:55174326-55174345 Msa0688880:intron 25.0%
! AATTGTACTATAAATCTTGC+AGG + chr4_4:55174546-55174565 Msa0688880:intron 25.0%
! ATTGTACTATAAATCTTGCA+GGG + chr4_4:55174547-55174566 Msa0688880:intron 25.0%
! ACCATATATGTGGTTAATAA+TGG + chr4_4:55174573-55174592 Msa0688880:intron 25.0%
! ACCATTATTAACCACATATA+TGG - chr4_4:55174577-55174596 None:intergenic 25.0%
!!! CAATCTACTTTTATACATGA+TGG - chr4_4:55174672-55174691 None:intergenic 25.0%
!! CTTGTAACTTGTAATGTATA+GGG - chr4_4:55174742-55174761 None:intergenic 25.0%
!! ACTTGTAACTTGTAATGTAT+AGG - chr4_4:55174743-55174762 None:intergenic 25.0%
! ATTAAAAACATGTAAGTGGA+AGG - chr4_4:55174792-55174811 None:intergenic 25.0%
!! TTTAATTGACGGTTTTTACA+AGG + chr4_4:55174813-55174832 Msa0688880:intron 25.0%
! ATATTTCCTTTCTTTCTTAC+AGG + chr4_4:55174837-55174856 Msa0688880:intron 25.0%
! ATATAAACAATTTCGAGACA+AGG + chr4_4:55174901-55174920 Msa0688880:CDS 25.0%
! CTCAAATACAACATTCATAT+TGG - chr4_4:55175211-55175230 None:intergenic 25.0%
TCTTCTTCTTGAATGAGTTT+GGG - chr4_4:55165118-55165137 None:intergenic 30.0%
!! TTTTTCTTCGATTTTGGTGT+CGG - chr4_4:55165172-55165191 None:intergenic 30.0%
GAAGAAAAAGTGATTCAAGA+AGG + chr4_4:55165183-55165202 Msa0688880:CDS 30.0%
TCAAATTCAAATTCTCCACT+GGG - chr4_4:55165240-55165259 None:intergenic 30.0%
TTCAAATTCAAATTCTCCAC+TGG - chr4_4:55165241-55165260 None:intergenic 30.0%
AATTTGAACCTATTACTGGT+TGG + chr4_4:55165253-55165272 Msa0688880:CDS 30.0%
!! AAGAAATGTGATGATGGTAA+AGG - chr4_4:55165384-55165403 None:intergenic 30.0%
AAGGATAAGAAATGTGATGA+TGG - chr4_4:55165390-55165409 None:intergenic 30.0%
! GAGAAATAGTTGATTCCTAT+TGG + chr4_4:55165572-55165591 Msa0688880:intron 30.0%
! CACTATGTTTAAAATCGTAG+AGG + chr4_4:55165677-55165696 Msa0688880:intron 30.0%
! TGTTTAAAATCGTAGAGGTA+TGG + chr4_4:55165682-55165701 Msa0688880:intron 30.0%
TTTGCTTTCATGAGCTATAT+TGG + chr4_4:55165864-55165883 Msa0688880:intron 30.0%
AAGTACTTATGTGAGTAGAA+AGG + chr4_4:55165966-55165985 Msa0688880:intron 30.0%
CAAATCATGACGCAATATTA+AGG + chr4_4:55166196-55166215 Msa0688880:intron 30.0%
GTAAAGTAGAAGAAATTCGA+AGG + chr4_4:55166595-55166614 Msa0688880:CDS 30.0%
TGCAAGTTTACTGAATTTCT+TGG - chr4_4:55166761-55166780 None:intergenic 30.0%
! GTAATTATTGATGGCTTCTA+TGG + chr4_4:55166806-55166825 Msa0688880:intron 30.0%
! TCTTGAACAATTTTCCTACT+TGG + chr4_4:55166868-55166887 Msa0688880:intron 30.0%
AAACTTCAGAGTTTATGCAT+TGG - chr4_4:55166897-55166916 None:intergenic 30.0%
GAATGTTCTCTATAGGATAT+AGG - chr4_4:55166949-55166968 None:intergenic 30.0%
CAACAGAAGATATATTGCTT+TGG - chr4_4:55167016-55167035 None:intergenic 30.0%
CAAATTTCATGGTTTATCCA+TGG - chr4_4:55167089-55167108 None:intergenic 30.0%
CACTAAGTGTTCAAATTTCA+TGG - chr4_4:55167100-55167119 None:intergenic 30.0%
! TATCTCCTCTTGTTATATGA+GGG + chr4_4:55167235-55167254 Msa0688880:intron 30.0%
AACAAAGAAAAGTAAGCACT+TGG - chr4_4:55167465-55167484 None:intergenic 30.0%
!! AGTGCTTACTTTTCTTTGTT+TGG + chr4_4:55167465-55167484 Msa0688880:CDS 30.0%
TACACACACACCAAAAAAAA+AGG - chr4_4:55167574-55167593 None:intergenic 30.0%
TTACCATTGAAAGACCAAAT+TGG - chr4_4:55167603-55167622 None:intergenic 30.0%
!!! CTTTTTATCTGGCCTTATAT+AGG + chr4_4:55167660-55167679 Msa0688880:intron 30.0%
GAATTGATCAAGCCTATATA+AGG - chr4_4:55167675-55167694 None:intergenic 30.0%
AACTATTGTATAATGTAGGC+TGG + chr4_4:55167736-55167755 Msa0688880:intron 30.0%
ACTATTGTATAATGTAGGCT+GGG + chr4_4:55167737-55167756 Msa0688880:intron 30.0%
GTATTGAATTAGGAAAGCTT+TGG - chr4_4:55168256-55168275 None:intergenic 30.0%
AGCTTTCCTAATTCAATACT+AGG + chr4_4:55168257-55168276 Msa0688880:intron 30.0%
GCTTTCCTAATTCAATACTA+GGG + chr4_4:55168258-55168277 Msa0688880:intron 30.0%
ATGACATTGCCAATAAATGT+AGG - chr4_4:55168386-55168405 None:intergenic 30.0%
GAAAAAATATTACAAGAGGC+TGG - chr4_4:55168443-55168462 None:intergenic 30.0%
! TGCTTTAACAACTAGTTTGA+TGG - chr4_4:55168465-55168484 None:intergenic 30.0%
ACAAACGTTATATGAAGTAC+TGG - chr4_4:55168623-55168642 None:intergenic 30.0%
! ATTATTTGAGACACTAGCAT+TGG - chr4_4:55168756-55168775 None:intergenic 30.0%
!!! CAGTTGTTAATTTTTTGTCC+AGG + chr4_4:55168912-55168931 Msa0688880:intron 30.0%
TAATATCTATACAAACTGGC+TGG + chr4_4:55169061-55169080 Msa0688880:CDS 30.0%
!! TTGAAAAGCAAAAGTACCTT+TGG - chr4_4:55169102-55169121 None:intergenic 30.0%
! TGCCAATTTAAAACAGGAAA+AGG + chr4_4:55169164-55169183 Msa0688880:intron 30.0%
! TCTTATTTAGTGATTAGTGG+TGG + chr4_4:55169382-55169401 Msa0688880:intron 30.0%
!! TTAGTGGTGGATATATTTGA+TGG + chr4_4:55169395-55169414 Msa0688880:intron 30.0%
CCAAACAAAAACTCTTCATT+TGG - chr4_4:55169427-55169446 None:intergenic 30.0%
! CCAAATGAAGAGTTTTTGTT+TGG + chr4_4:55169424-55169443 Msa0688880:intron 30.0%
! TGAAACATTGAATGTTTTGC+AGG + chr4_4:55169592-55169611 Msa0688880:intron 30.0%
AACAGATAAAAAACTGCCAA+CGG + chr4_4:55169649-55169668 Msa0688880:CDS 30.0%
GTTCTTATTGCATAGTAGAA+CGG - chr4_4:55170084-55170103 None:intergenic 30.0%
!!! TTCACTAACTGCTTCTTTTT+TGG + chr4_4:55170113-55170132 Msa0688880:intron 30.0%
CAATTAGTGTATACGGAAAT+TGG + chr4_4:55170328-55170347 Msa0688880:intron 30.0%
ATTTCATTATCTCTTTGTCC+TGG + chr4_4:55170402-55170421 Msa0688880:intron 30.0%
! GGTGTATTTTATTCACCAAA+AGG - chr4_4:55170516-55170535 None:intergenic 30.0%
!! TGCTATTGTTTTTCTAGTAG+GGG + chr4_4:55170799-55170818 Msa0688880:intron 30.0%
! CTAAGATTAATGAGAAGCAT+AGG + chr4_4:55170851-55170870 Msa0688880:intron 30.0%
! TTTGGAATCAAAAGCTTCAA+AGG - chr4_4:55170887-55170906 None:intergenic 30.0%
!! GAAGCTTTTGATTCCAAAAA+TGG + chr4_4:55170889-55170908 Msa0688880:intron 30.0%
ACTAAGAGATACATTGACAA+AGG + chr4_4:55170938-55170957 Msa0688880:intron 30.0%
CAGGTAGATTATATTGAAAC+AGG + chr4_4:55170967-55170986 Msa0688880:intron 30.0%
TTATATTGAAACAGGATGCT+AGG + chr4_4:55170975-55170994 Msa0688880:intron 30.0%
TTATGAGATCTATGAATCTC+GGG + chr4_4:55171014-55171033 Msa0688880:intron 30.0%
ATATAACAAACGCACTATCT+TGG + chr4_4:55171192-55171211 Msa0688880:intron 30.0%
TTGTGCTATAATTTACGTCA+TGG + chr4_4:55171277-55171296 Msa0688880:intron 30.0%
! TAGTTAGTTACCGTATTTTG+GGG - chr4_4:55171643-55171662 None:intergenic 30.0%
CGGTAACTAACTATTACTTT+CGG + chr4_4:55171650-55171669 Msa0688880:intron 30.0%
CAAAAGGTGAAGAAACTTTA+GGG + chr4_4:55171794-55171813 Msa0688880:intron 30.0%
AAAAGGTGAAGAAACTTTAG+GGG + chr4_4:55171795-55171814 Msa0688880:intron 30.0%
!!! GCAATTATTACCCTTTTTTG+AGG + chr4_4:55171824-55171843 Msa0688880:intron 30.0%
!!! GTTTTTAGCTCCTCAAAAAA+GGG - chr4_4:55171837-55171856 None:intergenic 30.0%
!!! TGTTTTTAGCTCCTCAAAAA+AGG - chr4_4:55171838-55171857 None:intergenic 30.0%
TTCCTCTCAAGTTTAAAAGT+AGG - chr4_4:55171869-55171888 None:intergenic 30.0%
! GTTAGGCTTTCTAAGTATTT+TGG + chr4_4:55171961-55171980 Msa0688880:intron 30.0%
!! ATCACGGTGTTTTATTGTTT+CGG + chr4_4:55172209-55172228 Msa0688880:intron 30.0%
TGCTGCTCAATTTAAGAATT+TGG + chr4_4:55172368-55172387 Msa0688880:intron 30.0%
GTTACTTATAGTCAAGATAG+GGG + chr4_4:55172483-55172502 Msa0688880:intron 30.0%
ACAATGAGGAAAAAGTTGTT+TGG + chr4_4:55172854-55172873 Msa0688880:intron 30.0%
CAATGAGGAAAAAGTTGTTT+GGG + chr4_4:55172855-55172874 Msa0688880:intron 30.0%
ATCATATCCAGAATATGATC+AGG + chr4_4:55173062-55173081 Msa0688880:intron 30.0%
CATGCTTAAAGTCATTATTG+TGG + chr4_4:55173136-55173155 Msa0688880:intron 30.0%
AGAGATTTCAAAAGAAGGAA+AGG - chr4_4:55173173-55173192 None:intergenic 30.0%
TCCAAAAACAATAATGTAGG+AGG + chr4_4:55173312-55173331 Msa0688880:intron 30.0%
! TCCTCCTACATTATTGTTTT+TGG - chr4_4:55173316-55173335 None:intergenic 30.0%
CTAATGTGCATAACCTATAA+AGG - chr4_4:55173345-55173364 None:intergenic 30.0%
! TTTTCATGCTACCATTTGAA+TGG + chr4_4:55173422-55173441 Msa0688880:intron 30.0%
GCAGTTAATTACCATTCAAA+TGG - chr4_4:55173436-55173455 None:intergenic 30.0%
TAATAGGTATGGAATCATCT+AGG - chr4_4:55173829-55173848 None:intergenic 30.0%
AAGTTATGCTAAAATATGGG+TGG + chr4_4:55173919-55173938 Msa0688880:intron 30.0%
TTTATATGCCTATAGCTTGA+AGG - chr4_4:55173949-55173968 None:intergenic 30.0%
!! TGGTTCTAGAGTTGATAAAT+TGG - chr4_4:55174042-55174061 None:intergenic 30.0%
GCAAAAGAATAACAAAAGCA+AGG - chr4_4:55174353-55174372 None:intergenic 30.0%
ACTAACAACCTCGATATTTA+CGG - chr4_4:55174386-55174405 None:intergenic 30.0%
TATAGTACAATTCAACACAC+TGG - chr4_4:55174538-55174557 None:intergenic 30.0%
! TCTCTGAAGAAAAGAAATCA+AGG + chr4_4:55174624-55174643 Msa0688880:intron 30.0%
! AGAAAAGAAATCAAGGTGTT+AGG + chr4_4:55174631-55174650 Msa0688880:intron 30.0%
GAGAAAAGTAGTTGTATGAA+AGG - chr4_4:55175011-55175030 None:intergenic 30.0%
TATTGCCATAGCAAAATTGA+AGG + chr4_4:55175136-55175155 Msa0688880:CDS 30.0%
GAGTAGTACAGTTACAAAAA+TGG + chr4_4:55175228-55175247 Msa0688880:intron 30.0%
AATAAAATCTCAGGTAGAGA+GGG - chr4_4:55175307-55175326 None:intergenic 30.0%
TAATAAAATCTCAGGTAGAG+AGG - chr4_4:55175308-55175327 None:intergenic 30.0%
! TCTCTACCTGAGATTTTATT+AGG + chr4_4:55175307-55175326 Msa0688880:CDS 30.0%
!! TGGAATCATTTTTCGTTCAT+TGG + chr4_4:55175420-55175439 Msa0688880:CDS 30.0%
!! ATCATTTTTCGTTCATTGGA+AGG + chr4_4:55175424-55175443 Msa0688880:CDS 30.0%
TTAAAATCTACAGGGAACTA+AGG - chr4_4:55175492-55175511 None:intergenic 30.0%
ATAGTAAGAATACATATGCC+TGG + chr4_4:55175681-55175700 Msa0688880:three_prime_UTR 30.0%
ACAATTACATGCATTTCTCT+TGG + chr4_4:55175777-55175796 Msa0688880:three_prime_UTR 30.0%
!! ATGATGATGATAAGGTGTTG+CGG - chr4_4:55165044-55165063 None:intergenic 35.0%
! AAGTGACGATGATGATGATA+AGG - chr4_4:55165052-55165071 None:intergenic 35.0%
CTTCTTCTTGAATGAGTTTG+GGG - chr4_4:55165117-55165136 None:intergenic 35.0%
GTCTTCTTCTTGAATGAGTT+TGG - chr4_4:55165119-55165138 None:intergenic 35.0%
AAATTCCTCCAACCAGTAAT+AGG - chr4_4:55165264-55165283 None:intergenic 35.0%
!! TGATGATGGTAAAGGAAAGA+AGG - chr4_4:55165376-55165395 None:intergenic 35.0%
! ACTATTTCTCCACCTCTATT+AGG - chr4_4:55165562-55165581 None:intergenic 35.0%
! TAAAATCGTAGAGGTATGGT+AGG + chr4_4:55165686-55165705 Msa0688880:intron 35.0%
TACCATGTGCCTATTTGAAT+TGG - chr4_4:55166003-55166022 None:intergenic 35.0%
! TTGATAGTTTAAACTGTGGG+TGG + chr4_4:55166571-55166590 Msa0688880:CDS 35.0%
TGATAGTTTAAACTGTGGGT+GGG + chr4_4:55166572-55166591 Msa0688880:CDS 35.0%
CTCTCTTGAATGTTCTCTAT+AGG - chr4_4:55166956-55166975 None:intergenic 35.0%
TTTATCCATGGCTTATGCAT+TGG - chr4_4:55167077-55167096 None:intergenic 35.0%
AAAAAGGAACCTTCTACTGA+AGG - chr4_4:55167203-55167222 None:intergenic 35.0%
!! GATACATTGATTCGGGAAAA+AGG - chr4_4:55167219-55167238 None:intergenic 35.0%
!! AAGAGGAGATACATTGATTC+GGG - chr4_4:55167226-55167245 None:intergenic 35.0%
! CAAGAGGAGATACATTGATT+CGG - chr4_4:55167227-55167246 None:intergenic 35.0%
! GTATCTCCTCTTGTTATATG+AGG + chr4_4:55167234-55167253 Msa0688880:intron 35.0%
TTCATCCCTCATATAACAAG+AGG - chr4_4:55167243-55167262 None:intergenic 35.0%
!!! GATGAAGCCTGTTATTTTCT+GGG + chr4_4:55167257-55167276 Msa0688880:intron 35.0%
TCACAATCCCAGAAAATAAC+AGG - chr4_4:55167267-55167286 None:intergenic 35.0%
AAGTATCAATGCACGTTAGA+GGG - chr4_4:55167345-55167364 None:intergenic 35.0%
! TGATACTTGAGTTTGCTTGT+AGG + chr4_4:55167357-55167376 Msa0688880:intron 35.0%
!! GCTTGTAGGAAAATTTGTTG+TGG + chr4_4:55167371-55167390 Msa0688880:intron 35.0%
AAGAAAAGTAAGCACTTGGA+GGG - chr4_4:55167461-55167480 None:intergenic 35.0%
AAAGAAAAGTAAGCACTTGG+AGG - chr4_4:55167462-55167481 None:intergenic 35.0%
TGTGTGTATGATCTCCAATT+TGG + chr4_4:55167586-55167605 Msa0688880:intron 35.0%
! TCTCCAATTTGGTCTTTCAA+TGG + chr4_4:55167597-55167616 Msa0688880:intron 35.0%
GTCTTTCAATGGTAATTTCG+AGG + chr4_4:55167608-55167627 Msa0688880:intron 35.0%
ATAGTTCATCTGGTGTCTTT+GGG - chr4_4:55167722-55167741 None:intergenic 35.0%
AATAGTTCATCTGGTGTCTT+TGG - chr4_4:55167723-55167742 None:intergenic 35.0%
!! GTTTTTACTTTGGGTTACCA+TGG - chr4_4:55167770-55167789 None:intergenic 35.0%
! TGACACCCTAGTATTGAATT+AGG - chr4_4:55168266-55168285 None:intergenic 35.0%
! TAGGGTGTCAAATGATACAT+TGG + chr4_4:55168276-55168295 Msa0688880:intron 35.0%
! AGGGTGTCAAATGATACATT+GGG + chr4_4:55168277-55168296 Msa0688880:intron 35.0%
CAAATTAGATCTGACCCAAA+TGG + chr4_4:55168321-55168340 Msa0688880:intron 35.0%
CAATAAATGTAGGACCAATC+TGG - chr4_4:55168376-55168395 None:intergenic 35.0%
! CAGATTGGTCCTACATTTAT+TGG + chr4_4:55168374-55168393 Msa0688880:intron 35.0%
ATCCTTGTAAGAAACTTACC+TGG + chr4_4:55168593-55168612 Msa0688880:intron 35.0%
TACCAGGTAAGTTTCTTACA+AGG - chr4_4:55168598-55168617 None:intergenic 35.0%
TCAGTACAAGACTTAACTTC+AGG - chr4_4:55168681-55168700 None:intergenic 35.0%
!! CCTATTTTATCTAAAACGCC+TGG - chr4_4:55168933-55168952 None:intergenic 35.0%
!! CCAGGCGTTTTAGATAAAAT+AGG + chr4_4:55168930-55168949 Msa0688880:intron 35.0%
! CTCACAATTTTCATCAGACA+TGG - chr4_4:55169021-55169040 None:intergenic 35.0%
!! AGTTGATAAGCTGAAAGAAG+AGG + chr4_4:55169229-55169248 Msa0688880:CDS 35.0%
! GTTGATAAGCTGAAAGAAGA+GGG + chr4_4:55169230-55169249 Msa0688880:CDS 35.0%
TTAGTGTATACGGAAATTGG+AGG + chr4_4:55170331-55170350 Msa0688880:intron 35.0%
! ATTCCTAATAATGCCCCTTT+TGG + chr4_4:55170498-55170517 Msa0688880:intron 35.0%
! TTCTTGGTTTGATTGAACAC+AGG + chr4_4:55170557-55170576 Msa0688880:intron 35.0%
AAATGGACACTTGGAATTTC+AGG + chr4_4:55170598-55170617 Msa0688880:CDS 35.0%
CTCATTAATCTTAGTGACAC+CGG - chr4_4:55170845-55170864 None:intergenic 35.0%
!! CAATACTGTATGGCCATTTT+TGG - chr4_4:55170905-55170924 None:intergenic 35.0%
CGAAAGCAAACAATACTGTA+TGG - chr4_4:55170915-55170934 None:intergenic 35.0%
ACATGAATGAAGAGTTCTGT+AGG - chr4_4:55171080-55171099 None:intergenic 35.0%
!!! TAGACAGGTTTTATTGCTGT+TGG - chr4_4:55171159-55171178 None:intergenic 35.0%
AACAGTATCGTAGATGAACA+CGG - chr4_4:55171221-55171240 None:intergenic 35.0%
ATTATCAGAATTGACAGTCC+TGG + chr4_4:55171348-55171367 Msa0688880:CDS 35.0%
TACCAGAACTTACAAATCAG+AGG - chr4_4:55171388-55171407 None:intergenic 35.0%
!! TCCACTTTTGGTCCATTTTA+CGG + chr4_4:55171732-55171751 Msa0688880:intron 35.0%
! CCTAAAGTTTCTTCACCTTT+TGG - chr4_4:55171796-55171815 None:intergenic 35.0%
CCAAAAGGTGAAGAAACTTT+AGG + chr4_4:55171793-55171812 Msa0688880:intron 35.0%
!! AGCCTACTTTTAAACTTGAG+AGG + chr4_4:55171864-55171883 Msa0688880:intron 35.0%
!! TGCATCTGGAATTTTTACCA+TGG + chr4_4:55171930-55171949 Msa0688880:intron 35.0%
!! TCTGGAATTTTTACCATGGA+TGG + chr4_4:55171934-55171953 Msa0688880:intron 35.0%
TTACCATGGATGGAATTGTT+AGG + chr4_4:55171944-55171963 Msa0688880:intron 35.0%
! TATTTTGTATCACGGTGCTT+AGG + chr4_4:55172029-55172048 Msa0688880:intron 35.0%
TTAGGATGTGGAGAGAAATT+CGG + chr4_4:55172047-55172066 Msa0688880:intron 35.0%
AAAACCAGTCATTGCTTCAA+TGG + chr4_4:55172084-55172103 Msa0688880:CDS 35.0%
! CTTACGTTAACTGGTTCAAT+TGG + chr4_4:55172172-55172191 Msa0688880:CDS 35.0%
TTGTTTCGGTAGGTGAATAT+AGG + chr4_4:55172223-55172242 Msa0688880:intron 35.0%
AAAATCATTCATGCACATGG+TGG + chr4_4:55172295-55172314 Msa0688880:intron 35.0%
CAATGATCAGTCTCAGTAAA+TGG + chr4_4:55172412-55172431 Msa0688880:intron 35.0%
!!! TCTCAGTTTTGTTCTCCTTA+TGG - chr4_4:55172641-55172660 None:intergenic 35.0%
TCACTGTACAAAATGAACAG+TGG + chr4_4:55172785-55172804 Msa0688880:intron 35.0%
ATGACACAAGAGAAACAATG+AGG + chr4_4:55172840-55172859 Msa0688880:intron 35.0%
ATGGAGATAAACATGGGTTT+CGG + chr4_4:55172929-55172948 Msa0688880:intron 35.0%
GGTTTCAACAATTGGATTTC+TGG + chr4_4:55172950-55172969 Msa0688880:intron 35.0%
! TTCAACAATTGGATTTCTGG+TGG + chr4_4:55172953-55172972 Msa0688880:intron 35.0%
ATGATCTCACCAAATTGTGT+AGG - chr4_4:55173047-55173066 None:intergenic 35.0%
AAGCATGATAGTCAAAACTG+TGG - chr4_4:55173123-55173142 None:intergenic 35.0%
GCTGAAGAGATTTCAAAAGA+AGG - chr4_4:55173178-55173197 None:intergenic 35.0%
!! TGGAAAAAGCATTGTAGAAC+AGG - chr4_4:55173296-55173315 None:intergenic 35.0%
GCATTCGGCTATATATCATT+TGG - chr4_4:55173461-55173480 None:intergenic 35.0%
CTAATTATTCATTCGACCTC+TGG + chr4_4:55173480-55173499 Msa0688880:intron 35.0%
TTATTTAGTATCTCAGCTGC+CGG + chr4_4:55173720-55173739 Msa0688880:intron 35.0%
! TCGTTGGGTTAGAATCTATT+TGG - chr4_4:55173790-55173809 None:intergenic 35.0%
GATTCTAACCCAACGAAAAT+TGG + chr4_4:55173794-55173813 Msa0688880:intron 35.0%
! AAACAGCATTTTGTGTACTC+AGG - chr4_4:55174311-55174330 None:intergenic 35.0%
!! ATATCGAGGTTGTTAGTCTT+TGG + chr4_4:55174389-55174408 Msa0688880:intron 35.0%
TAATTAGTCGATCTCCATCT+TGG + chr4_4:55174486-55174505 Msa0688880:intron 35.0%
ACACACTGGAGAAAAGAATT+AGG - chr4_4:55174524-55174543 None:intergenic 35.0%
TACAAGTTACAAGTTCAACC+TGG + chr4_4:55174749-55174768 Msa0688880:intron 35.0%
ACAAGTTACAAGTTCAACCT+GGG + chr4_4:55174750-55174769 Msa0688880:intron 35.0%
ATATGCATTCTGTGCAGATT+TGG - chr4_4:55174885-55174904 None:intergenic 35.0%
!! ACAACTACTTTTCTCAACCT+AGG + chr4_4:55175016-55175035 Msa0688880:intron 35.0%
!! ATTTTGCTATGGCAATAGCT+CGG - chr4_4:55175133-55175152 None:intergenic 35.0%
!!! ATTGGCCTTCAATTTTGCTA+TGG - chr4_4:55175144-55175163 None:intergenic 35.0%
CTTACTCGCCCATTTAATAA+TGG + chr4_4:55175750-55175769 Msa0688880:three_prime_UTR 35.0%
! GCATTTCTCTTGGTACTTTT+TGG + chr4_4:55175787-55175806 Msa0688880:three_prime_UTR 35.0%
!! TCTCTTGGTACTTTTTGGTA+CGG + chr4_4:55175792-55175811 Msa0688880:three_prime_UTR 35.0%
! TTGAACCTATTACTGGTTGG+AGG + chr4_4:55165256-55165275 Msa0688880:CDS 40.0%
TTGGAGGAATTTCGTCGTTA+AGG + chr4_4:55165272-55165291 Msa0688880:CDS 40.0%
GTTCTTACAATGAAGCTTCG+TGG + chr4_4:55165342-55165361 Msa0688880:CDS 40.0%
GTAAAGGAAAGAAGGAAACC+TGG - chr4_4:55165368-55165387 None:intergenic 40.0%
! AGGTGATTTGGCAGAATACA+CGG - chr4_4:55165542-55165561 None:intergenic 40.0%
TCTGCCAAATCACCTAATAG+AGG + chr4_4:55165547-55165566 Msa0688880:intron 40.0%
TCCACCTCTATTAGGTGATT+TGG - chr4_4:55165554-55165573 None:intergenic 40.0%
TAAGTGACATAGGCCTGATT+TGG + chr4_4:55165721-55165740 Msa0688880:intron 40.0%
AGCCAATTCAAATAGGCACA+TGG + chr4_4:55165998-55166017 Msa0688880:intron 40.0%
AGTGAAGAGTAGATTCTCTC+CGG + chr4_4:55166470-55166489 Msa0688880:CDS 40.0%
! ATTTGAGGTAGAGAAAGTCC+CGG - chr4_4:55166492-55166511 None:intergenic 40.0%
CCTATGATCCTCGAATTTCT+GGG + chr4_4:55166535-55166554 Msa0688880:CDS 40.0%
CTATGATCCTCGAATTTCTG+GGG + chr4_4:55166536-55166555 Msa0688880:CDS 40.0%
GATAGTTTAAACTGTGGGTG+GGG + chr4_4:55166573-55166592 Msa0688880:CDS 40.0%
!!! GGATGAAGCCTGTTATTTTC+TGG + chr4_4:55167256-55167275 Msa0688880:intron 40.0%
CAAGTATCAATGCACGTTAG+AGG - chr4_4:55167346-55167365 None:intergenic 40.0%
AGAAAAGTAAGCACTTGGAG+GGG - chr4_4:55167460-55167479 None:intergenic 40.0%
! TGGTAATTTCGAGGTTTTCG+TGG + chr4_4:55167617-55167636 Msa0688880:intron 40.0%
! GGTAATTTCGAGGTTTTCGT+GGG + chr4_4:55167618-55167637 Msa0688880:intron 40.0%
ATCAACTGACCAAACCAGAT+TGG + chr4_4:55168359-55168378 Msa0688880:intron 40.0%
AATGTAGGACCAATCTGGTT+TGG - chr4_4:55168371-55168390 None:intergenic 40.0%
! AGTATTATGACGGAGAGAGT+AGG + chr4_4:55168515-55168534 Msa0688880:intron 40.0%
TATAGAAGGGGAATGATACC+TGG + chr4_4:55168538-55168557 Msa0688880:intron 40.0%
TACAGAATTACCAGACTACC+AGG - chr4_4:55168559-55168578 None:intergenic 40.0%
!! ATATGAAGTACTGGACTACC+AGG - chr4_4:55168614-55168633 None:intergenic 40.0%
! TTGAGACACTAGCATTGGAA+TGG - chr4_4:55168751-55168770 None:intergenic 40.0%
! ATTGGCAAGTACAAAAGTGC+AGG + chr4_4:55168975-55168994 Msa0688880:CDS 40.0%
GATAAAGTCTCTTCTGCCAA+AGG + chr4_4:55169083-55169102 Msa0688880:CDS 40.0%
ACGGGTAGAAATTTCTTCAG+AGG + chr4_4:55169678-55169697 Msa0688880:intron 40.0%
!! GATCTAAGTAGCGGATTTCT+AGG + chr4_4:55169980-55169999 Msa0688880:intron 40.0%
!! TGGAAGATGACGGAATCAAT+AGG - chr4_4:55170036-55170055 None:intergenic 40.0%
ATGCACTATGTGGAAGATGA+CGG - chr4_4:55170046-55170065 None:intergenic 40.0%
!! TCACCAAAAGGGGCATTATT+AGG - chr4_4:55170504-55170523 None:intergenic 40.0%
TTGAACACAGGAAATACTCC+CGG + chr4_4:55170569-55170588 Msa0688880:intron 40.0%
AAGAACTGATAGCCATCATC+CGG + chr4_4:55170626-55170645 Msa0688880:CDS 40.0%
ACATTGACAAAGGCAAGAAC+AGG + chr4_4:55170948-55170967 Msa0688880:intron 40.0%
! TGCCTCTGATTTGTAAGTTC+TGG + chr4_4:55171383-55171402 Msa0688880:intron 40.0%
! ACAATTGGTCACTCCACTTT+TGG + chr4_4:55171720-55171739 Msa0688880:intron 40.0%
! TTTCTGAGAATGGCCACAAT+TGG - chr4_4:55171766-55171785 None:intergenic 40.0%
!! TGGTCCTTCTTTTCTGAGAA+TGG - chr4_4:55171776-55171795 None:intergenic 40.0%
CTCAGAAAAGAAGGACCAAA+AGG + chr4_4:55171778-55171797 Msa0688880:intron 40.0%
AAGCCTAACAATTCCATCCA+TGG - chr4_4:55171950-55171969 None:intergenic 40.0%
GCAGAAAGTCTTACGTTAAC+TGG + chr4_4:55172163-55172182 Msa0688880:CDS 40.0%
! GTTAACTGGTTCAATTGGAG+TGG + chr4_4:55172177-55172196 Msa0688880:CDS 40.0%
!! CGGTGTTTTATTGTTTCGGT+AGG + chr4_4:55172213-55172232 Msa0688880:intron 40.0%
GGTAGGTGAATATAGGAGAA+GGG + chr4_4:55172230-55172249 Msa0688880:intron 40.0%
!! AGAATTTGGAAGCCTTGTTG+AGG + chr4_4:55172382-55172401 Msa0688880:intron 40.0%
GAGAACAAAACTGAGAACAG+AGG + chr4_4:55172645-55172664 Msa0688880:intron 40.0%
CATGTGTGACAGTGTTTCAT+GGG - chr4_4:55172823-55172842 None:intergenic 40.0%
TCATGTGTGACAGTGTTTCA+TGG - chr4_4:55172824-55172843 None:intergenic 40.0%
GTTGTTTGGGAAGAAATGCT+TGG + chr4_4:55172868-55172887 Msa0688880:intron 40.0%
TGGGTTTCGGTTTCAACAAT+TGG + chr4_4:55172942-55172961 Msa0688880:intron 40.0%
!! TGGTAAACCTGCTTTTGGTT+AGG + chr4_4:55172973-55172992 Msa0688880:intron 40.0%
CGCAATGATCCTACACAATT+TGG + chr4_4:55173035-55173054 Msa0688880:intron 40.0%
ACACGATCCTGATCATATTC+TGG - chr4_4:55173072-55173091 None:intergenic 40.0%
AGAATATGATCAGGATCGTG+TGG + chr4_4:55173071-55173090 Msa0688880:intron 40.0%
GAATATGATCAGGATCGTGT+GGG + chr4_4:55173072-55173091 Msa0688880:intron 40.0%
AAAGAAGGAAAGGTCGCTAT+AGG - chr4_4:55173163-55173182 None:intergenic 40.0%
! TGTAGAACAGGTTTTCCTCT+CGG - chr4_4:55173284-55173303 None:intergenic 40.0%
AGGAGGAAATCTGCCTTTAT+AGG + chr4_4:55173329-55173348 Msa0688880:intron 40.0%
GTACTGTTGTTGATCTCTGT+AGG + chr4_4:55173391-55173410 Msa0688880:intron 40.0%
!! ATTCGACCTCTGGAATAATG+AGG + chr4_4:55173490-55173509 Msa0688880:intron 40.0%
TCTTCTCATACAGTTTCGCT+AGG - chr4_4:55173618-55173637 None:intergenic 40.0%
GCGAAACTGTATGAGAAGAT+TGG + chr4_4:55173619-55173638 Msa0688880:CDS 40.0%
!! TATTGATTTGAGGACCTCTC+AGG + chr4_4:55173997-55174016 Msa0688880:intron 40.0%
!! ATTGATTTGAGGACCTCTCA+GGG + chr4_4:55173998-55174017 Msa0688880:intron 40.0%
AGTGCAAACTGCAAACACAT+TGG - chr4_4:55174062-55174081 None:intergenic 40.0%
! AGCATTTTGTGTACTCAGGT+GGG - chr4_4:55174307-55174326 None:intergenic 40.0%
GGCATATATCCAAACCAAGA+TGG - chr4_4:55174503-55174522 None:intergenic 40.0%
CAAGTTACAAGTTCAACCTG+GGG + chr4_4:55174751-55174770 Msa0688880:intron 40.0%
TAAGTGGAAGGAAGAACTCT+CGG - chr4_4:55174780-55174799 None:intergenic 40.0%
ATCTGGCCTGTAAGAAAGAA+AGG - chr4_4:55174846-55174865 None:intergenic 40.0%
AGAACGTACAGTCATAGATC+TGG - chr4_4:55174936-55174955 None:intergenic 40.0%
!! ACTACTTTTCTCAACCTAGG+TGG + chr4_4:55175019-55175038 Msa0688880:intron 40.0%
!! CATGGTTTGGTTGATGCTAT+TGG + chr4_4:55175098-55175117 Msa0688880:CDS 40.0%
!! TTTTGCTATGGCAATAGCTC+GGG - chr4_4:55175132-55175151 None:intergenic 40.0%
ATTGAAGGCCAATATACCTC+AGG + chr4_4:55175151-55175170 Msa0688880:CDS 40.0%
ATATCTCCACAACAGTTACC+TGG - chr4_4:55175273-55175292 None:intergenic 40.0%
! CTGAGATTTTATTAGGCGCA+CGG + chr4_4:55175314-55175333 Msa0688880:CDS 40.0%
TTTCTGATGGAGTTCAAGCT+AGG + chr4_4:55175392-55175411 Msa0688880:CDS 40.0%
AGTGAAGTGATGAGCTGACA+AGG - chr4_4:55164907-55164926 None:intergenic 45.0%
!! ATGATGATAAGGTGTTGCGG+CGG - chr4_4:55165041-55165060 None:intergenic 45.0%
AGTTTGGGGAAGAGAGTGAA+AGG - chr4_4:55165103-55165122 None:intergenic 45.0%
! GGAAGAATCAAAAGCGCGAA+GGG - chr4_4:55165148-55165167 None:intergenic 45.0%
! AGGAAGAATCAAAAGCGCGA+AGG - chr4_4:55165149-55165168 None:intergenic 45.0%
!!! TTCTTCGATTTTGGTGTCGG+AGG - chr4_4:55165169-55165188 None:intergenic 45.0%
GCTGATGAAGATTATCCCAG+TGG + chr4_4:55165222-55165241 Msa0688880:CDS 45.0%
AGATGCTCATTGCGTATCCA+TGG + chr4_4:55165298-55165317 Msa0688880:CDS 45.0%
GATGCTCATTGCGTATCCAT+GGG + chr4_4:55165299-55165318 Msa0688880:CDS 45.0%
GCCAAATCACCTAATAGAGG+TGG + chr4_4:55165550-55165569 Msa0688880:intron 45.0%
AAGGTTGTTGCCTTGTGAGT+TGG + chr4_4:55166215-55166234 Msa0688880:intron 45.0%
TAGAAACAGCTTTCCGCTTG+CGG + chr4_4:55166257-55166276 Msa0688880:intron 45.0%
AATGGGTGATTAAGCACACG+AGG - chr4_4:55166302-55166321 None:intergenic 45.0%
GTGAAGAGTAGATTCTCTCC+GGG + chr4_4:55166471-55166490 Msa0688880:CDS 45.0%
GCCTATGATCCTCGAATTTC+TGG + chr4_4:55166534-55166553 Msa0688880:CDS 45.0%
CCCAGAAATTCGAGGATCAT+AGG - chr4_4:55166538-55166557 None:intergenic 45.0%
AGATAGACCCCAGAAATTCG+AGG - chr4_4:55166546-55166565 None:intergenic 45.0%
! TTATGCATTGGCAGCCAAGT+AGG - chr4_4:55166885-55166904 None:intergenic 45.0%
CTGAAATGGCCTTCAGTAGA+AGG + chr4_4:55167191-55167210 Msa0688880:intron 45.0%
CTGGGATTGTGATGTAACTG+AGG + chr4_4:55167275-55167294 Msa0688880:intron 45.0%
! ATTTCGAGGTTTTCGTGGGA+TGG + chr4_4:55167622-55167641 Msa0688880:intron 45.0%
! TTTCGAGGTTTTCGTGGGAT+GGG + chr4_4:55167623-55167642 Msa0688880:intron 45.0%
TGTATAATGTAGGCTGGGTC+AGG + chr4_4:55167742-55167761 Msa0688880:intron 45.0%
TAGATCTGACCCAAATGGCT+TGG + chr4_4:55168326-55168345 Msa0688880:intron 45.0%
AGATCTGACCCAAATGGCTT+GGG + chr4_4:55168327-55168346 Msa0688880:intron 45.0%
TTACAAGAGGCTGGAACTGA+TGG - chr4_4:55168434-55168453 None:intergenic 45.0%
ACGGAGAGAGTAGGTATAGA+AGG + chr4_4:55168524-55168543 Msa0688880:intron 45.0%
CGGAGAGAGTAGGTATAGAA+GGG + chr4_4:55168525-55168544 Msa0688880:intron 45.0%
GGAGAGAGTAGGTATAGAAG+GGG + chr4_4:55168526-55168545 Msa0688880:intron 45.0%
AATAGGAGTTGAACCGCAAG+TGG + chr4_4:55168947-55168966 Msa0688880:CDS 45.0%
TTGCCAATCCTTTCCACTTG+CGG - chr4_4:55168963-55168982 None:intergenic 45.0%
GCAGGTTACTGACATGTTGA+AGG + chr4_4:55169610-55169629 Msa0688880:intron 45.0%
GACATGTTGAAGGAGAGACT+TGG + chr4_4:55169620-55169639 Msa0688880:CDS 45.0%
AAACTGCCAACGGTCGATTA+CGG + chr4_4:55169659-55169678 Msa0688880:CDS 45.0%
TCCACCTCTATGCTTCAACA+GGG + chr4_4:55169920-55169939 Msa0688880:intron 45.0%
ACATCCCTGTTGAAGCATAG+AGG - chr4_4:55169927-55169946 None:intergenic 45.0%
AGCTGCAATGATGCACTATG+TGG - chr4_4:55170056-55170075 None:intergenic 45.0%
! CTTTGTCCTGGTTCTTTCTG+TGG + chr4_4:55170414-55170433 Msa0688880:intron 45.0%
CATAAGCCACAGAAAGAACC+AGG - chr4_4:55170423-55170442 None:intergenic 45.0%
TGAACACAGGAAATACTCCC+GGG + chr4_4:55170570-55170589 Msa0688880:intron 45.0%
! AATACTCCCGGGTTAGGAAA+TGG + chr4_4:55170581-55170600 Msa0688880:CDS 45.0%
AAGTGTCCATTTCCTAACCC+GGG - chr4_4:55170590-55170609 None:intergenic 45.0%
CAAGTGTCCATTTCCTAACC+CGG - chr4_4:55170591-55170610 None:intergenic 45.0%
TGGACACTTGGAATTTCAGG+TGG + chr4_4:55170601-55170620 Msa0688880:CDS 45.0%
AGAACTGATAGCCATCATCC+GGG + chr4_4:55170627-55170646 Msa0688880:CDS 45.0%
!! AGGGAGCATTAGTCGAGTTA+AGG + chr4_4:55170654-55170673 Msa0688880:CDS 45.0%
!! GGGAGCATTAGTCGAGTTAA+GGG + chr4_4:55170655-55170674 Msa0688880:CDS 45.0%
! CAGTTAAGTGTCTCTAGCTC+AGG + chr4_4:55170679-55170698 Msa0688880:CDS 45.0%
ATCAGAATTGACAGTCCTGG+AGG + chr4_4:55171351-55171370 Msa0688880:CDS 45.0%
GCCGTAAAATGGACCAAAAG+TGG - chr4_4:55171736-55171755 None:intergenic 45.0%
! TTTGGTCCATTTTACGGCTG+AGG + chr4_4:55171738-55171757 Msa0688880:intron 45.0%
! TTGGTCCATTTTACGGCTGA+GGG + chr4_4:55171739-55171758 Msa0688880:intron 45.0%
GTGGCCATTCTCAGAAAAGA+AGG + chr4_4:55171769-55171788 Msa0688880:intron 45.0%
TCAGCCATTGAAGCAATGAC+TGG - chr4_4:55172091-55172110 None:intergenic 45.0%
CATTGCTTCAATGGCTGATG+TGG + chr4_4:55172093-55172112 Msa0688880:CDS 45.0%
AGCAAGTGGAGGATACTACA+TGG + chr4_4:55172117-55172136 Msa0688880:CDS 45.0%
TGGAGGATACTACATGGCAA+TGG + chr4_4:55172123-55172142 Msa0688880:CDS 45.0%
GGAGGATACTACATGGCAAT+GGG + chr4_4:55172124-55172143 Msa0688880:CDS 45.0%
CGGTAGGTGAATATAGGAGA+AGG + chr4_4:55172229-55172248 Msa0688880:intron 45.0%
CTGTCGAGACACTAAAGCAA+TGG - chr4_4:55172442-55172461 None:intergenic 45.0%
!! CAGCATCAAAGGTTGGTTTG+GGG - chr4_4:55172720-55172739 None:intergenic 45.0%
!! GCAGCATCAAAGGTTGGTTT+GGG - chr4_4:55172721-55172740 None:intergenic 45.0%
! TGCAGCATCAAAGGTTGGTT+TGG - chr4_4:55172722-55172741 None:intergenic 45.0%
ACTACTGCAGCATCAAAGGT+TGG - chr4_4:55172727-55172746 None:intergenic 45.0%
TCGTACTACTGCAGCATCAA+AGG - chr4_4:55172731-55172750 None:intergenic 45.0%
TGGGAAGAAATGCTTGGAAG+AGG + chr4_4:55172874-55172893 Msa0688880:intron 45.0%
GGGAAGAAATGCTTGGAAGA+GGG + chr4_4:55172875-55172894 Msa0688880:intron 45.0%
TTGGAAGAGGGTTAGATAGC+AGG + chr4_4:55172887-55172906 Msa0688880:intron 45.0%
TGGAAGAGGGTTAGATAGCA+GGG + chr4_4:55172888-55172907 Msa0688880:intron 45.0%
! TCTGGTGGTAAACCTGCTTT+TGG + chr4_4:55172968-55172987 Msa0688880:intron 45.0%
TGTCATGCCTAACCAAAAGC+AGG - chr4_4:55172983-55173002 None:intergenic 45.0%
TCTGCTTACTTTCTACCGAG+AGG + chr4_4:55173266-55173285 Msa0688880:intron 45.0%
GTCTTGCCTCATTATTCCAG+AGG - chr4_4:55173499-55173518 None:intergenic 45.0%
!! GTGCTGATCAGCGTTCTTTT+AGG + chr4_4:55173689-55173708 Msa0688880:CDS 45.0%
!! TCCTTCTCAAAGAGAGTGTC+CGG - chr4_4:55173742-55173761 None:intergenic 45.0%
ACCCAACGAAAATTGGCTGA+TGG + chr4_4:55173801-55173820 Msa0688880:intron 45.0%
! GCCATCAGCCAATTTTCGTT+GGG - chr4_4:55173805-55173824 None:intergenic 45.0%
! TGCCATCAGCCAATTTTCGT+TGG - chr4_4:55173806-55173825 None:intergenic 45.0%
GTGGACTTCCTTCAAGCTAT+AGG + chr4_4:55173938-55173957 Msa0688880:intron 45.0%
TTCTGTACGAAATCCCTGAG+AGG - chr4_4:55174014-55174033 None:intergenic 45.0%
! CAGCATTTTGTGTACTCAGG+TGG - chr4_4:55174308-55174327 None:intergenic 45.0%
AGTCGATCTCCATCTTGGTT+TGG + chr4_4:55174491-55174510 Msa0688880:intron 45.0%
TGCAGGGCTTACCATATATG+TGG + chr4_4:55174563-55174582 Msa0688880:intron 45.0%
GGTAAAGATGCAGCATCACA+TGG + chr4_4:55175080-55175099 Msa0688880:CDS 45.0%
AGATGCAGCATCACATGGTT+TGG + chr4_4:55175085-55175104 Msa0688880:CDS 45.0%
! GGTTTGGTTGATGCTATTGG+TGG + chr4_4:55175101-55175120 Msa0688880:CDS 45.0%
CTGTTCGTCCTGAGGTATAT+TGG - chr4_4:55175162-55175181 None:intergenic 45.0%
CAATATACCTCAGGACGAAC+AGG + chr4_4:55175160-55175179 Msa0688880:CDS 45.0%
TAACTAACCTGTTCGTCCTG+AGG - chr4_4:55175170-55175189 None:intergenic 45.0%
CGTGCGCCTAATAAAATCTC+AGG - chr4_4:55175316-55175335 None:intergenic 45.0%
CTTCAACGTGCTTTCAACTC+CGG - chr4_4:55175350-55175369 None:intergenic 45.0%
ACGTTGAAGGAACTGCTACA+GGG + chr4_4:55175361-55175380 Msa0688880:CDS 45.0%
! CAGGGGTTGACATTTTCTGA+TGG + chr4_4:55175379-55175398 Msa0688880:CDS 45.0%
TGATGGAGTTCAAGCTAGGA+TGG + chr4_4:55175396-55175415 Msa0688880:CDS 45.0%
GACAAAATGGGGTTGTCGTT+GGG - chr4_4:55175454-55175473 None:intergenic 45.0%
TGACAAAATGGGGTTGTCGT+TGG - chr4_4:55175455-55175474 None:intergenic 45.0%
TGTACGTACAGTGATTGCGA+GGG - chr4_4:55175619-55175638 None:intergenic 45.0%
ATGTACGTACAGTGATTGCG+AGG - chr4_4:55175620-55175639 None:intergenic 45.0%
TATGCCTGGATTGTCTCATC+TGG + chr4_4:55175695-55175714 Msa0688880:three_prime_UTR 45.0%
AAGTCCAGATGAGACAATCC+AGG - chr4_4:55175702-55175721 None:intergenic 45.0%
TGTCTCATCTGGACTTCTGT+AGG + chr4_4:55175706-55175725 Msa0688880:three_prime_UTR 45.0%
GTCTCATCTGGACTTCTGTA+GGG + chr4_4:55175707-55175726 Msa0688880:three_prime_UTR 45.0%
TCTCATCTGGACTTCTGTAG+GGG + chr4_4:55175708-55175727 Msa0688880:three_prime_UTR 45.0%
!! ATAAATATTATATGTATATT+TGG + chr4_4:55168203-55168222 Msa0688880:intron 5.0%
!!! AAATTATAACTTTTTATTTT+AGG + chr4_4:55170243-55170262 Msa0688880:intron 5.0%
!! TACTTTATATTAATAATAAT+AGG - chr4_4:55173845-55173864 None:intergenic 5.0%
CCTTTACGAACACGTTCCCA+TGG - chr4_4:55165318-55165337 None:intergenic 50.0%
CCATGGGAACGTGTTCGTAA+AGG + chr4_4:55165315-55165334 Msa0688880:CDS 50.0%
TACAATGAAGCTTCGTGGCC+AGG + chr4_4:55165347-55165366 Msa0688880:CDS 50.0%
! GTTGTTGCCTTGTGAGTTGG+AGG + chr4_4:55166218-55166237 Msa0688880:intron 50.0%
CTCATGACCTCCAACTCACA+AGG - chr4_4:55166228-55166247 None:intergenic 50.0%
!! GCAAGCGGAAAGCTGTTTCT+AGG - chr4_4:55166258-55166277 None:intergenic 50.0%
AGAAACAGCTTTCCGCTTGC+GGG + chr4_4:55166258-55166277 Msa0688880:intron 50.0%
GTTCAAGCCTCATTCCTCAG+AGG + chr4_4:55167495-55167514 Msa0688880:CDS 50.0%
! CAGCTTACCTCTGAGGAATG+AGG - chr4_4:55167505-55167524 None:intergenic 50.0%
CTCATTCCTCAGAGGTAAGC+TGG + chr4_4:55167503-55167522 Msa0688880:intron 50.0%
GAAAGACCAGCTTACCTCTG+AGG - chr4_4:55167512-55167531 None:intergenic 50.0%
! TGACCCAAATGGCTTGGGTT+GGG + chr4_4:55168332-55168351 Msa0688880:intron 50.0%
AAGCCCAACCCAAGCCATTT+GGG - chr4_4:55168338-55168357 None:intergenic 50.0%
GGGAATGATACCTGGTAGTC+TGG + chr4_4:55168546-55168565 Msa0688880:intron 50.0%
GAGTTGAACCGCAAGTGGAA+AGG + chr4_4:55168952-55168971 Msa0688880:CDS 50.0%
GAACCGCAAGTGGAAAGGAT+TGG + chr4_4:55168957-55168976 Msa0688880:CDS 50.0%
AACTGCCAACGGTCGATTAC+GGG + chr4_4:55169660-55169679 Msa0688880:CDS 50.0%
TTCTACCCGTAATCGACCGT+TGG - chr4_4:55169668-55169687 None:intergenic 50.0%
CTGTTGAAGCATAGAGGTGG+AGG - chr4_4:55169921-55169940 None:intergenic 50.0%
CTCCACCTCTATGCTTCAAC+AGG + chr4_4:55169919-55169938 Msa0688880:intron 50.0%
TCCCTGTTGAAGCATAGAGG+TGG - chr4_4:55169924-55169943 None:intergenic 50.0%
ACAGGAAATACTCCCGGGTT+AGG + chr4_4:55170575-55170594 Msa0688880:intron 50.0%
! CGGGTTAGGAAATGGACACT+TGG + chr4_4:55170589-55170608 Msa0688880:CDS 50.0%
AACTCGACTAATGCTCCCTG+AGG - chr4_4:55170653-55170672 None:intergenic 50.0%
GAGAAGATTCGCACTGTCAG+AGG + chr4_4:55170724-55170743 Msa0688880:CDS 50.0%
GAAACAGGATGCTAGGACTG+AGG + chr4_4:55170982-55171001 Msa0688880:intron 50.0%
TTGGTCCCTCAGCCGTAAAA+TGG - chr4_4:55171747-55171766 None:intergenic 50.0%
GTATCACGGTGCTTAGGATG+TGG + chr4_4:55172035-55172054 Msa0688880:intron 50.0%
GGTTCAATTGGAGTGGTCAC+AGG + chr4_4:55172184-55172203 Msa0688880:CDS 50.0%
GGAGTGGTCACAGGTAATCA+CGG + chr4_4:55172193-55172212 Msa0688880:intron 50.0%
!!! GGGGCTACAGGATTTTGGTT+TGG - chr4_4:55172701-55172720 None:intergenic 50.0%
!! GGTTTGGGGCTACAGGATTT+TGG - chr4_4:55172706-55172725 None:intergenic 50.0%
!! AAAGGTTGGTTTGGGGCTAC+AGG - chr4_4:55172713-55172732 None:intergenic 50.0%
TTCACGCGCCGTAAATATCG+AGG + chr4_4:55174375-55174394 Msa0688880:intron 50.0%
GTTACAAGTTCAACCTGGGG+AGG + chr4_4:55174754-55174773 Msa0688880:intron 50.0%
CTCAACCTAGGTGGACAAGA+TGG + chr4_4:55175028-55175047 Msa0688880:intron 50.0%
AACCTAGGTGGACAAGATGG+AGG + chr4_4:55175031-55175050 Msa0688880:intron 50.0%
AAGATGGAGGAGGTAGCACA+GGG + chr4_4:55175044-55175063 Msa0688880:CDS 50.0%
AGGTAGCACAGGGTAGAGTT+TGG + chr4_4:55175054-55175073 Msa0688880:CDS 50.0%
CTATGGCAATAGCTCGGGAA+AGG - chr4_4:55175127-55175146 None:intergenic 50.0%
GACTTTGCTTGTGCTATGCC+AGG + chr4_4:55175252-55175271 Msa0688880:intron 50.0%
GCTATGCCAGGTAACTGTTG+TGG + chr4_4:55175264-55175283 Msa0688880:intron 50.0%
AGGTAGAGAGGGACTAGATC+TGG - chr4_4:55175296-55175315 None:intergenic 50.0%
CGTGCTTTCAACTCCGGTTA+GGG - chr4_4:55175344-55175363 None:intergenic 50.0%
ACGTGCTTTCAACTCCGGTT+AGG - chr4_4:55175345-55175364 None:intergenic 50.0%
! CGGAGTTGAAAGCACGTTGA+AGG + chr4_4:55175348-55175367 Msa0688880:CDS 50.0%
CACGTTGAAGGAACTGCTAC+AGG + chr4_4:55175360-55175379 Msa0688880:CDS 50.0%
CGTTGAAGGAACTGCTACAG+GGG + chr4_4:55175362-55175381 Msa0688880:CDS 50.0%
GGAGTTCAAGCTAGGATGGA+TGG + chr4_4:55175400-55175419 Msa0688880:CDS 50.0%
GTACGTACAGTGATTGCGAG+GGG - chr4_4:55175618-55175637 None:intergenic 50.0%
!! TAAGGTGTTGCGGCGGTAGA+GGG - chr4_4:55165034-55165053 None:intergenic 55.0%
!! ATAAGGTGTTGCGGCGGTAG+AGG - chr4_4:55165035-55165054 None:intergenic 55.0%
GGCTGCCAATGCATAAGCCA+TGG + chr4_4:55167069-55167088 Msa0688880:intron 55.0%
TCTCTTCACATGCACACGCG+AGG - chr4_4:55167431-55167450 None:intergenic 55.0%
! CTGACCCAAATGGCTTGGGT+TGG + chr4_4:55168331-55168350 Msa0688880:intron 55.0%
CAAGCCCAACCCAAGCCATT+TGG - chr4_4:55168339-55168358 None:intergenic 55.0%
! CTCTAGCTCAGGCATCACTG+CGG + chr4_4:55170690-55170709 Msa0688880:CDS 55.0%
TACGGCTGAGGGACCAATTG+TGG + chr4_4:55171750-55171769 Msa0688880:intron 55.0%
ATGGCTGATGTGGCAGCAAG+TGG + chr4_4:55172103-55172122 Msa0688880:CDS 55.0%
CATTGCTCAGCGCCTCAACA+AGG - chr4_4:55172397-55172416 None:intergenic 55.0%
! GCCGGACACTCTCTTTGAGA+AGG + chr4_4:55173738-55173757 Msa0688880:intron 55.0%
CTCCTCCATCTTGTCCACCT+AGG - chr4_4:55175036-55175055 None:intergenic 55.0%
CTAGGTGGACAAGATGGAGG+AGG + chr4_4:55175034-55175053 Msa0688880:intron 55.0%
CAAGATGGAGGAGGTAGCAC+AGG + chr4_4:55175043-55175062 Msa0688880:CDS 55.0%
GCACAGGGTAGAGTTTGGAC+TGG + chr4_4:55175059-55175078 Msa0688880:CDS 55.0%
ACACGAGGCTTCCACCAGGT+GGG - chr4_4:55166287-55166306 None:intergenic 60.0%
AAGCACACGAGGCTTCCACC+AGG - chr4_4:55166291-55166310 None:intergenic 60.0%
GTAGGCTGGGTCAGGAACCA+TGG + chr4_4:55167750-55167769 Msa0688880:intron 60.0%
ATAGCCATCATCCGGGCCTC+AGG + chr4_4:55170634-55170653 Msa0688880:CDS 60.0%
TAGCCATCATCCGGGCCTCA+GGG + chr4_4:55170635-55170654 Msa0688880:CDS 60.0%
GACTAATGCTCCCTGAGGCC+CGG - chr4_4:55170648-55170667 None:intergenic 60.0%
TAGCTCAGGCATCACTGCGG+AGG + chr4_4:55170693-55170712 Msa0688880:CDS 60.0%
GCTGATGTGGCAGCAAGTGG+AGG + chr4_4:55172106-55172125 Msa0688880:CDS 60.0%
! TAGAGGGAGGTGTGGAGGGG+GGG - chr4_4:55165018-55165037 None:intergenic 65.0%
! GTAGAGGGAGGTGTGGAGGG+GGG - chr4_4:55165019-55165038 None:intergenic 65.0%
! GGTAGAGGGAGGTGTGGAGG+GGG - chr4_4:55165020-55165039 None:intergenic 65.0%
! CGGTAGAGGGAGGTGTGGAG+GGG - chr4_4:55165021-55165040 None:intergenic 65.0%
! GCGGTAGAGGGAGGTGTGGA+GGG - chr4_4:55165022-55165041 None:intergenic 65.0%
ACGAGGCTTCCACCAGGTGG+GGG - chr4_4:55166285-55166304 None:intergenic 65.0%
CACGAGGCTTCCACCAGGTG+GGG - chr4_4:55166286-55166305 None:intergenic 65.0%
CACACGAGGCTTCCACCAGG+TGG - chr4_4:55166288-55166307 None:intergenic 65.0%
!! GAGGCAAGAGCGTCACCTCC+AGG - chr4_4:55171369-55171388 None:intergenic 65.0%
GAAGAACTCTCGGCCTCCCC+AGG - chr4_4:55174770-55174789 None:intergenic 65.0%
GGCGCACGGAGTTCCCTAAC+CGG + chr4_4:55175328-55175347 Msa0688880:CDS 65.0%
! GAGGTGTGGAGGGGGGGTGT+GGG - chr4_4:55165012-55165031 None:intergenic 70.0%
! GGCGGTAGAGGGAGGTGTGG+AGG - chr4_4:55165023-55165042 None:intergenic 70.0%
TGCGGCGGTAGAGGGAGGTG+TGG - chr4_4:55165026-55165045 None:intergenic 70.0%
! GGTGTTGCGGCGGTAGAGGG+AGG - chr4_4:55165031-55165050 None:intergenic 70.0%
GCTCCCTGAGGCCCGGATGA+TGG - chr4_4:55170641-55170660 None:intergenic 70.0%
! GGAGGTGTGGAGGGGGGGTG+TGG - chr4_4:55165013-55165032 None:intergenic 75.0%
CCAGGTGGGGGACCCGCAAG+CGG - chr4_4:55166273-55166292 None:intergenic 75.0%
CTTGCGGGTCCCCCACCTGG+TGG + chr4_4:55166273-55166292 Msa0688880:intron 75.0%
! CCGCTTGCGGGTCCCCCACC+TGG + chr4_4:55166270-55166289 Msa0688880:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 55164882 55175828 55164882 ID=Msa0688880;Name=Msa0688880
chr4_4 mRNA 55164882 55175828 55164882 ID=Msa0688880-mRNA-1;Parent=Msa0688880;Name=Msa0688880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=109|1|1|1|1|1|13|324|667
chr4_4 exon 55164882 55165368 55164882 ID=Msa0688880-mRNA-1:exon:14538;Parent=Msa0688880-mRNA-1
chr4_4 exon 55166459 55166642 55166459 ID=Msa0688880-mRNA-1:exon:14539;Parent=Msa0688880-mRNA-1
chr4_4 exon 55167379 55167516 55167379 ID=Msa0688880-mRNA-1:exon:14540;Parent=Msa0688880-mRNA-1
chr4_4 exon 55168934 55169104 55168934 ID=Msa0688880-mRNA-1:exon:14541;Parent=Msa0688880-mRNA-1
chr4_4 exon 55169180 55169283 55169180 ID=Msa0688880-mRNA-1:exon:14542;Parent=Msa0688880-mRNA-1
chr4_4 exon 55169614 55169681 55169614 ID=Msa0688880-mRNA-1:exon:14543;Parent=Msa0688880-mRNA-1
chr4_4 exon 55170579 55170745 55170579 ID=Msa0688880-mRNA-1:exon:14544;Parent=Msa0688880-mRNA-1
chr4_4 exon 55171325 55171394 55171325 ID=Msa0688880-mRNA-1:exon:14545;Parent=Msa0688880-mRNA-1
chr4_4 exon 55172051 55172205 55172051 ID=Msa0688880-mRNA-1:exon:14546;Parent=Msa0688880-mRNA-1
chr4_4 exon 55173605 55173710 55173605 ID=Msa0688880-mRNA-1:exon:14547;Parent=Msa0688880-mRNA-1
chr4_4 exon 55174859 55174946 55174859 ID=Msa0688880-mRNA-1:exon:14548;Parent=Msa0688880-mRNA-1
chr4_4 exon 55175038 55175181 55175038 ID=Msa0688880-mRNA-1:exon:14549;Parent=Msa0688880-mRNA-1
chr4_4 exon 55175274 55175828 55175274 ID=Msa0688880-mRNA-1:exon:14550;Parent=Msa0688880-mRNA-1
chr4_4 five_prime_UTR 55164882 55164990 55164882 ID=Msa0688880-mRNA-1:five_prime_utr;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55164991 55165368 55164991 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55166459 55166642 55166459 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55167379 55167516 55167379 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55168934 55169104 55168934 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55169180 55169283 55169180 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55169614 55169681 55169614 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55170579 55170745 55170579 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55171325 55171394 55171325 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55172051 55172205 55172051 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55173605 55173710 55173605 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55174859 55174946 55174859 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55175038 55175181 55175038 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 CDS 55175274 55175504 55175274 ID=Msa0688880-mRNA-1:cds;Parent=Msa0688880-mRNA-1
chr4_4 three_prime_UTR 55175505 55175828 55175505 ID=Msa0688880-mRNA-1:three_prime_utr;Parent=Msa0688880-mRNA-1
Gene Sequence

>Msa0688880

ATGTCTACACTTCTTCTACCCACACCCCCCCTCCACACCTCCCTCTACCGCCGCAACACCTTATCATCATCATCGTCACTTCAATTTCACTCTCGCTTCTCTTTTTCTTCCTTTCACTCTCTTCCCCAAACTCATTCAAGAAGAAGACGCATTTCCCTTCGCGCTTTTGATTCTTCCTCCGACACCAAAATCGAAGAAAAAGTGATTCAAGAAGGTGAAAAAGTTAGAATTGCTGATGAAGATTATCCCAGTGGAGAATTTGAATTTGAACCTATTACTGGTTGGAGGAATTTCGTCGTTAAGGTTAAGATGCTCATTGCGTATCCATGGGAACGTGTTCGTAAAGGTAGTGTTCTTACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGATTCTCTCCGGGACTTTCTCTACCTCAAATATGCGAGAATTTTTTGAAAGCAGCCTATGATCCTCGAATTTCTGGGGTCTATCTCCATATTGATAGTTTAAACTGTGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCACATCTTGAACTTCAAAAAATCAGGAAAATTTGTTGTGGCTTATCTCCCTACATGTCAAGAAAAAGAATATTACCTCGCGTGTGCATGTGAAGAGATATATGCCCCTCCAAGTGCTTACTTTTCTTTGTTTGGATTGAGTGTTCAAGCCTCATTCCTCAGAGGCGTTTTAGATAAAATAGGAGTTGAACCGCAAGTGGAAAGGATTGGCAAGTACAAAAGTGCAGGAGATCAATTAGCTCGAACAACCATGTCTGATGAAAATTGTGAGATGTTGACTGCATTACTAGATAATATCTATACAAACTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAAGGAAGAGAAGATATTGAGAACTTTATAAATGAAGGTGTTTATCAAGTTGATAAGCTGAAAGAAGAGGGCCTTATATCAAATTTAATGTATGATGATGAGGTTACTGACATGTTGAAGGAGAGACTTGGAGTGAAAACAGATAAAAAACTGCCAACGGTCGATTACGGGAAATACTCCCGGGTTAGGAAATGGACACTTGGAATTTCAGGTGGCAAAGAACTGATAGCCATCATCCGGGCCTCAGGGAGCATTAGTCGAGTTAAGGGTCAGTTAAGTGTCTCTAGCTCAGGCATCACTGCGGAGGAGTTCATTGAGAAGATTCGCACTGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATTATCAGAATTGACAGTCCTGGAGGTGACGCTCTTGCCTCTGATTTGATGTGGAGAGAAATTCGGCTTTTAGCTGCTTCAAAACCAGTCATTGCTTCAATGGCTGATGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAACTGATGCTATTGTTGCAGAAAGTCTTACGTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTAGCGAAACTGTATGAGAAGATTGGCTTTAATAAAGAAATCATATCAAGGGGAAGATATGCTGAGCTCGTTAGTGCTGATCAGCGTTCTTTTAGGCCAGATGAAGCAGAGCTATTTGCCAAATCTGCACAGAATGCATATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCTATGACTGTGGACAAGATGGAGGAGGTAGCACAGGGTAGAGTTTGGACTGGTAAAGATGCAGCATCACATGGTTTGGTTGATGCTATTGGTGGCCTTTCCCGAGCTATTGCCATAGCAAAATTGAAGGCCAATATACCTCAGGACGAACAGGTAACTGTTGTGGAGATATCCAGATCTAGTCCCTCTCTACCTGAGATTTTATTAGGCGCACGGAGTTCCCTAACCGGAGTTGAAAGCACGTTGAAGGAACTGCTACAGGGGTTGACATTTTCTGATGGAGTTCAAGCTAGGATGGATGGAATCATTTTTCGTTCATTGGAAGGATATCCCAACGACAACCCCATTTTGTCAATTATAAAAGATTACCTTAGTTCCCTGTAG
Protein sequence

>Msa0688880

MSTLLLPTPPLHTSLYRRNTLSSSSSLQFHSRFSFSSFHSLPQTHSRRRRISLRAFDSSSDTKIEEKVIQEGEKVRIADEDYPSGEFEFEPITGWRNFVVKVKMLIAYPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGVYLHIDSLNCGWGKVEEIRRHILNFKKSGKFVVAYLPTCQEKEYYLACACEEIYAPPSAYFSLFGLSVQASFLRGVLDKIGVEPQVERIGKYKSAGDQLARTTMSDENCEMLTALLDNIYTNWLDKVSSAKGKGREDIENFINEGVYQVDKLKEEGLISNLMYDDEVTDMLKERLGVKTDKKLPTVDYGKYSRVRKWTLGISGGKELIAIIRASGSISRVKGQLSVSSSGITAEEFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMGTDAIVAESLTLTGSIGVVTGKFNLAKLYEKIGFNKEIISRGRYAELVSADQRSFRPDEAELFAKSAQNAYKQFRDKAALSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDEQVTVVEISRSSPSLPEILLGARSSLTGVESTLKELLQGLTFSDGVQARMDGIIFRSLEGYPNDNPILSIIKDYLSSL*