AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438410 MtrunA17_Chr8g0386001 96.809 282 5 1 1 282 1 278 0.0 554
Msa1438410 MtrunA17_Chr3g0131951 56.993 286 103 2 10 275 72 357 4.44e-116 338
Msa1438410 MtrunA17_Chr7g0214191 47.794 272 126 3 1 267 1 261 1.05e-77 237
Msa1438410 MtrunA17_Chr5g0428281 45.055 273 139 4 3 273 4 267 8.09e-74 227
Msa1438410 MtrunA17_Chr7g0214181 49.576 236 118 1 1 236 1 235 9.23e-74 226
Msa1438410 MtrunA17_Chr8g0386011 47.479 238 120 4 4 240 5 238 2.24e-69 215
Msa1438410 MtrunA17_Chr3g0131961 46.637 223 116 3 10 231 11 231 5.33e-67 209
Msa1438410 MtrunA17_Chr7g0215601 47.934 242 121 4 4 241 5 245 1.11e-66 208
Msa1438410 MtrunA17_Chr5g0444031 40.891 247 140 3 4 246 25 269 1.14e-60 193
Msa1438410 MtrunA17_Chr2g0278491 42.920 226 121 6 56 277 1 222 1.76e-50 166
Msa1438410 MtrunA17_Chr2g0295681 38.462 208 127 1 10 217 6 212 1.25e-46 156
Msa1438410 MtrunA17_Chr3g0125861 34.498 229 144 3 6 231 2 227 6.07e-42 144
Msa1438410 MtrunA17_Chr6g0450941 37.156 218 131 4 11 223 83 299 1.06e-41 145
Msa1438410 MtrunA17_Chr8g0388621 33.043 230 151 2 11 238 12 240 1.61e-41 143
Msa1438410 MtrunA17_Chr1g0159431 35.931 231 140 4 6 233 2 227 4.41e-41 142
Msa1438410 MtrunA17_Chr3g0119951 31.939 263 164 6 12 269 11 263 4.94e-41 142
Msa1438410 MtrunA17_Chr3g0126421 32.558 258 160 4 5 258 2 249 1.84e-40 140
Msa1438410 MtrunA17_Chr3g0119991 31.474 251 157 6 24 269 2 242 4.63e-38 134
Msa1438410 MtrunA17_Chr1g0158931 34.667 225 138 3 10 226 7 230 2.07e-37 133
Msa1438410 MtrunA17_Chr3g0126411 32.558 258 160 4 5 258 2 249 2.50e-37 132
Msa1438410 MtrunA17_Chr4g0059191 34.123 211 132 3 25 231 1 208 5.11e-35 125
Msa1438410 MtrunA17_Chr8g0359261 33.180 217 136 4 13 225 18 229 2.44e-32 119
Msa1438410 MtrunA17_Chr6g0450931 33.831 201 121 5 31 223 7 203 3.92e-32 118
Msa1438410 MtrunA17_Chr2g0314571 31.963 219 137 5 13 225 18 230 2.24e-29 111
Msa1438410 MtrunA17_Chr6g0450951 34.896 192 117 5 31 217 7 195 4.62e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438410 AT5G50800.1 48.814 295 135 7 1 281 1 293 6.97e-89 266
Msa1438410 AT5G23660.1 53.138 239 103 2 1 231 3 240 2.68e-85 257
Msa1438410 AT4G25010.1 47.872 282 131 4 1 267 1 281 2.16e-80 244
Msa1438410 AT3G48740.1 46.127 284 140 6 1 275 3 282 3.17e-80 244
Msa1438410 AT5G13170.1 43.885 278 130 4 10 269 12 281 2.84e-77 237
Msa1438410 AT5G50790.1 40.659 273 146 6 11 269 11 281 7.16e-68 213
Msa1438410 AT2G39060.1 46.414 237 120 3 10 242 10 243 9.57e-65 204
Msa1438410 AT4G15920.1 35.021 237 152 2 8 243 4 239 1.47e-51 169
Msa1438410 AT3G16690.1 32.710 214 144 0 10 223 6 219 2.79e-44 150
Msa1438410 AT3G16690.3 32.710 214 144 0 10 223 41 254 4.07e-44 151
Msa1438410 AT1G21460.1 36.752 234 136 4 6 230 2 232 2.04e-42 146
Msa1438410 AT5G62850.1 33.778 225 146 2 6 228 5 228 2.56e-39 137
Msa1438410 AT4G10850.1 33.654 208 136 1 11 216 12 219 2.12e-38 135
Msa1438410 AT5G53190.1 34.034 238 146 4 12 240 9 244 6.54e-38 135
Msa1438410 AT5G40260.1 34.579 214 134 4 10 218 9 221 2.21e-35 127
Msa1438410 AT3G28007.1 36.321 212 128 4 11 218 10 218 3.25e-35 127
Msa1438410 AT1G66770.1 31.963 219 146 2 1 216 1 219 7.43e-35 127
Msa1438410 AT3G14770.1 32.569 218 141 3 11 225 16 230 1.56e-31 117
Msa1438410 AT5G62850.2 33.862 189 122 2 6 192 5 192 4.18e-31 115
Msa1438410 AT5G40260.2 35.519 183 113 3 10 188 9 190 4.43e-30 112
Msa1438410 AT1G21460.2 35.417 192 118 3 6 194 2 190 1.99e-29 110
Msa1438410 AT3G16690.2 29.167 144 102 0 10 153 6 149 6.85e-21 88.2

Find 56 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGATTGGGTTGTTTAATT+TGG 0.148249 tig0028546:+3262 Msa1438410:CDS
ATTACATACCCTTGCTTTCT+TGG 0.188827 tig0028546:-3011 Msa1438410:intergenic
ATACTCACCATAACGCTTAA+AGG 0.233412 tig0028546:-3398 Msa1438410:intergenic
CTGATTGGGTTGTTTAATTT+GGG 0.255905 tig0028546:+3263 Msa1438410:CDS
TTGATATCATCTTTGTGTTC+TGG 0.282619 tig0028546:-4230 Msa1438410:intergenic
ACTAACTATGCTATAATATA+TGG 0.283413 tig0028546:-4551 Msa1438410:intergenic
TGCAGCACCTTTAAGCGTTA+TGG 0.323289 tig0028546:+3391 Msa1438410:CDS
AACTTTGTGGGTATCACATT+TGG 0.323979 tig0028546:+4143 Msa1438410:CDS
TCACAACAAGTGCAATTATA+TGG 0.328007 tig0028546:+3561 Msa1438410:CDS
AGGCATAAACTCTACACTTT+TGG 0.335245 tig0028546:-3519 Msa1438410:intergenic
ACAGAACGTATCGAACTTCT+TGG 0.348472 tig0028546:+3335 Msa1438410:CDS
CACACAACCAAATGCATTGA+TGG 0.355614 tig0028546:-2948 Msa1438410:intergenic
ATCTTCACATTGAAGCTGAT+TGG 0.360466 tig0028546:+3248 Msa1438410:CDS
ATCATCACCATCAATGCATT+TGG 0.361524 tig0028546:+2941 Msa1438410:CDS
GAAGCAAGAAGAGAAGAAAC+AGG 0.365263 tig0028546:+4331 Msa1438410:CDS
CACTCTTCAGTGCAATGCTT+TGG 0.375576 tig0028546:+2882 Msa1438410:CDS
TCTTCACATTGAAGCTGATT+GGG 0.409416 tig0028546:+3249 Msa1438410:CDS
CCTCAAAGATATATTTGTTA+CGG 0.420795 tig0028546:+3601 Msa1438410:CDS
GGGACAGCTTCCGAACTTTG+TGG 0.421425 tig0028546:+4130 Msa1438410:intron
CTGAAGAGTGCAGCCACATA+TGG 0.434896 tig0028546:-2869 Msa1438410:intergenic
TGAGAAGTTTGATAAATTGA+AGG 0.436768 tig0028546:+4404 Msa1438410:exon
TGTACTTGATTTCCTTCACT+TGG 0.445244 tig0028546:-4365 Msa1438410:intergenic
GGACAGCTTCCGAACTTTGT+GGG 0.454384 tig0028546:+4131 Msa1438410:intron
TCCTATATTCAACATACAAA+AGG 0.460017 tig0028546:+2129 Msa1438410:five_prime_UTR
CCGTAACAAATATATCTTTG+AGG 0.464322 tig0028546:-3601 Msa1438410:intergenic
AATGTGATACCCACAAAGTT+CGG 0.481534 tig0028546:-4140 Msa1438410:intergenic
AAATCAAGTACAACAACAAA+AGG 0.486924 tig0028546:+4376 Msa1438410:CDS
TTCATACATGCATTTGTGCA+AGG 0.496378 tig0028546:-4700 Msa1438410:intergenic
GTTTGTAAGAAGAAAACAAC+AGG 0.503909 tig0028546:+2830 Msa1438410:CDS
AGAAGGAGTGAAAGAGTGAA+AGG 0.510328 tig0028546:-3539 Msa1438410:intergenic
TCATACATGCATTTGTGCAA+GGG 0.513101 tig0028546:-4699 Msa1438410:intergenic
GAGAAGTTTGATAAATTGAA+GGG 0.516591 tig0028546:+4405 Msa1438410:exon
CAGCCACATATGGAGCAGAT+TGG 0.522606 tig0028546:-2859 Msa1438410:intergenic
CTTATTGCTCCAAGAAAGCA+AGG 0.525447 tig0028546:+3002 Msa1438410:CDS
GGAGCAATAAGTGATATAGA+TGG 0.527394 tig0028546:-2990 Msa1438410:intergenic
TCAAACATATTCTGATACCA+TGG 0.537188 tig0028546:+2160 Msa1438410:exon
TTTCCAATCTGCTCCATATG+TGG 0.537778 tig0028546:+2856 Msa1438410:CDS
ATTGGGTTGTTTAATTTGGG+AGG 0.542194 tig0028546:+3266 Msa1438410:CDS
TATAGGAGAGAAGACAAGGA+AGG 0.550189 tig0028546:-2113 Msa1438410:intergenic
TGAATATAGGAGAGAAGACA+AGG 0.551688 tig0028546:-2117 Msa1438410:intergenic
TAATTGCACTTGTTGTGAGA+AGG 0.562113 tig0028546:-3556 Msa1438410:intergenic
GGCTATAAAGCAAAAGAAAG+AGG 0.564263 tig0028546:-2645 Msa1438410:intergenic
AACGTATCGAACTTCTTGGA+TGG 0.564898 tig0028546:+3339 Msa1438410:CDS
GAAGAAACAAAACCAAGTGA+AGG 0.574594 tig0028546:+4353 Msa1438410:CDS
CACATTTGGAACAATTCAGA+TGG 0.576532 tig0028546:+4157 Msa1438410:CDS
TAATTTGGGAGGAATTTGCT+TGG 0.577927 tig0028546:+3277 Msa1438410:CDS
AATGCACAAAACAACACACA+TGG 0.584531 tig0028546:-4478 Msa1438410:intergenic
CAAGTACAACAACAAAAGGA+AGG 0.611484 tig0028546:+4380 Msa1438410:CDS
GCAATTATATGGCTGTGCTA+TGG 0.628621 tig0028546:+3572 Msa1438410:CDS
TGTAAGAAGAAAACAACAGG+AGG 0.632520 tig0028546:+2833 Msa1438410:CDS
AATAAGTGATATAGATGGCG+AGG 0.639838 tig0028546:-2985 Msa1438410:intergenic
TGTTCATATTGAGACTACAA+TGG 0.641365 tig0028546:+4295 Msa1438410:CDS
ATGCACAAAACAACACACAT+GGG 0.656015 tig0028546:-4477 Msa1438410:intergenic
AGTATTGTCTCTGTGAACCA+TGG 0.657818 tig0028546:-2177 Msa1438410:intergenic
GAGGTGAACATTTAAGCTAG+AGG 0.674188 tig0028546:+2069 Msa1438410:five_prime_UTR
TTATTGCTCCAAGAAAGCAA+GGG 0.730949 tig0028546:+3003 Msa1438410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTATATATTA+AGG + tig0028546:3897-3916 Msa1438410:intron 0.0%
!! TAAACAAAAAAAAAGTTATA+AGG - tig0028546:2607-2626 Msa1438410:intergenic 10.0%
!! TATACTACTAAAAAAAATTA+TGG + tig0028546:3059-3078 Msa1438410:intron 10.0%
!! CTAATTTAATTATTATTAGT+AGG + tig0028546:3181-3200 Msa1438410:intron 10.0%
!!! CACATTATTAATTTTTTTTT+TGG + tig0028546:4109-4128 Msa1438410:intron 10.0%
!! AGATTTAGTGATAAAAAATA+AGG + tig0028546:2333-2352 Msa1438410:intron 15.0%
!!! TCCAATTTTAAAAAATTAGT+TGG + tig0028546:2478-2497 Msa1438410:intron 15.0%
!!! TCCAACTAATTTTTTAAAAT+TGG - tig0028546:2482-2501 Msa1438410:intergenic 15.0%
!!! TTTTTTTTGTTTAATGTTGT+AGG + tig0028546:2614-2633 Msa1438410:intron 15.0%
!!! TTTTTTTGAAATACTTACAT+GGG - tig0028546:2671-2690 Msa1438410:intergenic 15.0%
!!! ATTTTTTTGAAATACTTACA+TGG - tig0028546:2672-2691 Msa1438410:intergenic 15.0%
!!! AATAGAAATTATAGTTGATA+AGG + tig0028546:3804-3823 Msa1438410:intron 15.0%
!! ACATCTCAAAAATAATTATA+TGG + tig0028546:3974-3993 Msa1438410:intron 15.0%
!!! TTTTTTACTACTAGTTTATA+TGG + tig0028546:4032-4051 Msa1438410:intron 15.0%
!! CATTAAAAATCGTAAAATAT+GGG + tig0028546:4497-4516 Msa1438410:three_prime_UTR 15.0%
!!! TTTTTTGAAATACTTACATG+GGG - tig0028546:2670-2689 Msa1438410:intergenic 20.0%
!!! ATTTTATGCCTACATAAAAA+CGG + tig0028546:2907-2926 Msa1438410:CDS 20.0%
!! TCAACAATTTATAGTAGAAT+TGG - tig0028546:3635-3654 Msa1438410:intergenic 20.0%
!!! TACTAGTTTATATGGTATTT+TGG + tig0028546:4040-4059 Msa1438410:intron 20.0%
!! GCATTAAAAATCGTAAAATA+TGG + tig0028546:4496-4515 Msa1438410:three_prime_UTR 20.0%
!! ACTAACTATGCTATAATATA+TGG - tig0028546:4554-4573 Msa1438410:intergenic 20.0%
!!! AAACAGAGATTACATATTTT+TGG - tig0028546:4611-4630 Msa1438410:intergenic 20.0%
!! AAAAATATGTAATCTCTGTT+TGG + tig0028546:4610-4629 Msa1438410:three_prime_UTR 20.0%
! TCCTATATTCAACATACAAA+AGG + tig0028546:2129-2148 Msa1438410:five_prime_UTR 25.0%
!! TCCTTTTGTATGTTGAATAT+AGG - tig0028546:2133-2152 Msa1438410:intergenic 25.0%
!!! ATTTTTGTAGTTGGTATTCT+AGG + tig0028546:2203-2222 Msa1438410:CDS 25.0%
! GTTATTTAATTCTTGTGAGA+AGG - tig0028546:2573-2592 Msa1438410:intergenic 25.0%
!!! TTTTTGAAATACTTACATGG+GGG - tig0028546:2669-2688 Msa1438410:intergenic 25.0%
!! TTTTATGCCTACATAAAAAC+GGG + tig0028546:2908-2927 Msa1438410:CDS 25.0%
!! CCTCAAAGATATATTTGTTA+CGG + tig0028546:3601-3620 Msa1438410:CDS 25.0%
!! AAAGCTAGTTTATTGCTTAT+AGG + tig0028546:3750-3769 Msa1438410:intron 25.0%
! TAGCTAATAAAATTAGCATG+CGG + tig0028546:3827-3846 Msa1438410:intron 25.0%
! GTTGAATTAATTAAGAGAAG+TGG - tig0028546:4009-4028 Msa1438410:intergenic 25.0%
!!! AGTTTATATGGTATTTTGGT+TGG + tig0028546:4044-4063 Msa1438410:intron 25.0%
! GTTAATAGTATCAATCCATT+AGG - tig0028546:4082-4101 Msa1438410:intergenic 25.0%
!!! TATGAACAACATTTTGAAGA+GGG - tig0028546:4283-4302 Msa1438410:intergenic 25.0%
!!! ATATGAACAACATTTTGAAG+AGG - tig0028546:4284-4303 Msa1438410:intergenic 25.0%
! AAATCAAGTACAACAACAAA+AGG + tig0028546:4376-4395 Msa1438410:CDS 25.0%
! TGAGAAGTTTGATAAATTGA+AGG + tig0028546:4404-4423 Msa1438410:exon 25.0%
! GAGAAGTTTGATAAATTGAA+GGG + tig0028546:4405-4424 Msa1438410:exon 25.0%
TCAAACATATTCTGATACCA+TGG + tig0028546:2160-2179 Msa1438410:exon 30.0%
! AATACTGCGATTTTTGTAGT+TGG + tig0028546:2194-2213 Msa1438410:CDS 30.0%
TATGATTCAGTTGACCATAA+TGG - tig0028546:2438-2457 Msa1438410:intergenic 30.0%
GTTTACAATCAAGTTTAGAG+AGG - tig0028546:2521-2540 Msa1438410:intergenic 30.0%
GTTTGTAAGAAGAAAACAAC+AGG + tig0028546:2830-2849 Msa1438410:CDS 30.0%
! ATTTGAGACTTGTGTGTTAT+TGG + tig0028546:3217-3236 Msa1438410:intron 30.0%
! CTGATTGGGTTGTTTAATTT+GGG + tig0028546:3263-3282 Msa1438410:CDS 30.0%
TCACAACAAGTGCAATTATA+TGG + tig0028546:3561-3580 Msa1438410:CDS 30.0%
CCGTAACAAATATATCTTTG+AGG - tig0028546:3604-3623 Msa1438410:intergenic 30.0%
! CATCTTTACAAGTGTTACTA+TGG + tig0028546:3699-3718 Msa1438410:intron 30.0%
! TGGCTTTTATTATGTCCTAA+TGG + tig0028546:4064-4083 Msa1438410:intron 30.0%
TTGATATCATCTTTGTGTTC+TGG - tig0028546:4233-4252 Msa1438410:intergenic 30.0%
TGTTCATATTGAGACTACAA+TGG + tig0028546:4295-4314 Msa1438410:CDS 30.0%
!!! AAGACAAGGAAGGTTTTGAA+GGG - tig0028546:2106-2125 Msa1438410:intergenic 35.0%
TGAATATAGGAGAGAAGACA+AGG - tig0028546:2120-2139 Msa1438410:intergenic 35.0%
CACTCTTGATCTAACCATTA+TGG + tig0028546:2421-2440 Msa1438410:intron 35.0%
CAACTGAATCATAAGTCGAT+AGG + tig0028546:2445-2464 Msa1438410:intron 35.0%
GGCTATAAAGCAAAAGAAAG+AGG - tig0028546:2648-2667 Msa1438410:intergenic 35.0%
TGTAAGAAGAAAACAACAGG+AGG + tig0028546:2833-2852 Msa1438410:CDS 35.0%
!! CATTTCACCCGTTTTTATGT+AGG - tig0028546:2918-2937 Msa1438410:intergenic 35.0%
ATCATCACCATCAATGCATT+TGG + tig0028546:2941-2960 Msa1438410:CDS 35.0%
AATAAGTGATATAGATGGCG+AGG - tig0028546:2988-3007 Msa1438410:intergenic 35.0%
GGAGCAATAAGTGATATAGA+TGG - tig0028546:2993-3012 Msa1438410:intergenic 35.0%
TTATTGCTCCAAGAAAGCAA+GGG + tig0028546:3003-3022 Msa1438410:CDS 35.0%
ATTACATACCCTTGCTTTCT+TGG - tig0028546:3014-3033 Msa1438410:intergenic 35.0%
TATCATCAAGTTAGTGAACG+AGG + tig0028546:3119-3138 Msa1438410:intron 35.0%
ATCTTCACATTGAAGCTGAT+TGG + tig0028546:3248-3267 Msa1438410:CDS 35.0%
TCTTCACATTGAAGCTGATT+GGG + tig0028546:3249-3268 Msa1438410:CDS 35.0%
! GCTGATTGGGTTGTTTAATT+TGG + tig0028546:3262-3281 Msa1438410:CDS 35.0%
!! ATTGGGTTGTTTAATTTGGG+AGG + tig0028546:3266-3285 Msa1438410:CDS 35.0%
! TAATTTGGGAGGAATTTGCT+TGG + tig0028546:3277-3296 Msa1438410:CDS 35.0%
ATACTCACCATAACGCTTAA+AGG - tig0028546:3401-3420 Msa1438410:intergenic 35.0%
TGAAATTGAACACGGTGATT+TGG - tig0028546:3482-3501 Msa1438410:intergenic 35.0%
! AGGCATAAACTCTACACTTT+TGG - tig0028546:3522-3541 Msa1438410:intergenic 35.0%
!! TAATTGCACTTGTTGTGAGA+AGG - tig0028546:3559-3578 Msa1438410:intergenic 35.0%
AATGTGATACCCACAAAGTT+CGG - tig0028546:4143-4162 Msa1438410:intergenic 35.0%
AACTTTGTGGGTATCACATT+TGG + tig0028546:4143-4162 Msa1438410:CDS 35.0%
! CACATTTGGAACAATTCAGA+TGG + tig0028546:4157-4176 Msa1438410:CDS 35.0%
! GGTAGCTTTTGATCATTTAC+AGG - tig0028546:4212-4231 Msa1438410:intergenic 35.0%
GAAGAAACAAAACCAAGTGA+AGG + tig0028546:4353-4372 Msa1438410:CDS 35.0%
TGTACTTGATTTCCTTCACT+TGG - tig0028546:4368-4387 Msa1438410:intergenic 35.0%
CAAGTACAACAACAAAAGGA+AGG + tig0028546:4380-4399 Msa1438410:CDS 35.0%
ATGCACAAAACAACACACAT+GGG - tig0028546:4480-4499 Msa1438410:intergenic 35.0%
AATGCACAAAACAACACACA+TGG - tig0028546:4481-4500 Msa1438410:intergenic 35.0%
TCATACATGCATTTGTGCAA+GGG - tig0028546:4702-4721 Msa1438410:intergenic 35.0%
TTCATACATGCATTTGTGCA+AGG - tig0028546:4703-4722 Msa1438410:intergenic 35.0%
GAGGTGAACATTTAAGCTAG+AGG + tig0028546:2069-2088 Msa1438410:five_prime_UTR 40.0%
!! GAAGACAAGGAAGGTTTTGA+AGG - tig0028546:2107-2126 Msa1438410:intergenic 40.0%
TATAGGAGAGAAGACAAGGA+AGG - tig0028546:2116-2135 Msa1438410:intergenic 40.0%
AGTATTGTCTCTGTGAACCA+TGG - tig0028546:2180-2199 Msa1438410:intergenic 40.0%
CTGAATCATAAGTCGATAGG+TGG + tig0028546:2448-2467 Msa1438410:intron 40.0%
TTTCCAATCTGCTCCATATG+TGG + tig0028546:2856-2875 Msa1438410:CDS 40.0%
CACACAACCAAATGCATTGA+TGG - tig0028546:2951-2970 Msa1438410:intergenic 40.0%
CTTATTGCTCCAAGAAAGCA+AGG + tig0028546:3002-3021 Msa1438410:CDS 40.0%
ACAGAACGTATCGAACTTCT+TGG + tig0028546:3335-3354 Msa1438410:CDS 40.0%
AACGTATCGAACTTCTTGGA+TGG + tig0028546:3339-3358 Msa1438410:CDS 40.0%
CTGCAAAAACACTAGTTGAG+AGG - tig0028546:3376-3395 Msa1438410:intergenic 40.0%
!! CCACTCTCTGAAATTGAACA+CGG - tig0028546:3490-3509 Msa1438410:intergenic 40.0%
AGAAGGAGTGAAAGAGTGAA+AGG - tig0028546:3542-3561 Msa1438410:intergenic 40.0%
GCAATTATATGGCTGTGCTA+TGG + tig0028546:3572-3591 Msa1438410:CDS 40.0%
! AAGTGTTACTATGGCTCAGA+TGG + tig0028546:3708-3727 Msa1438410:intron 40.0%
! AGTGTTACTATGGCTCAGAT+GGG + tig0028546:3709-3728 Msa1438410:intron 40.0%
GAAGCAAGAAGAGAAGAAAC+AGG + tig0028546:4331-4350 Msa1438410:CDS 40.0%
CACTCTTCAGTGCAATGCTT+TGG + tig0028546:2882-2901 Msa1438410:CDS 45.0%
TGCAGCACCTTTAAGCGTTA+TGG + tig0028546:3391-3410 Msa1438410:CDS 45.0%
CCGTGTTCAATTTCAGAGAG+TGG + tig0028546:3487-3506 Msa1438410:intron 45.0%
!!! ACATTATTAATTTTTTTTTT+GGG + tig0028546:4110-4129 Msa1438410:intron 5.0%
CAGCCACATATGGAGCAGAT+TGG - tig0028546:2862-2881 Msa1438410:intergenic 50.0%
! CTGAAGAGTGCAGCCACATA+TGG - tig0028546:2872-2891 Msa1438410:intergenic 50.0%
GGACAGCTTCCGAACTTTGT+GGG + tig0028546:4131-4150 Msa1438410:intron 50.0%
GGGACAGCTTCCGAACTTTG+TGG + tig0028546:4130-4149 Msa1438410:intron 55.0%
Chromosome Type Strat End Strand Name
tig0028546 gene 2063 4737 2063 ID=Msa1438410;Name=Msa1438410
tig0028546 mRNA 2063 4737 2063 ID=Msa1438410-mRNA-1;Parent=Msa1438410;Name=Msa1438410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=116|1|1|1|1|1|6|331|282
tig0028546 exon 2063 2224 2063 ID=Msa1438410-mRNA-1:exon:11247;Parent=Msa1438410-mRNA-1
tig0028546 exon 2636 2672 2636 ID=Msa1438410-mRNA-1:exon:11248;Parent=Msa1438410-mRNA-1
tig0028546 exon 2814 3024 2814 ID=Msa1438410-mRNA-1:exon:11249;Parent=Msa1438410-mRNA-1
tig0028546 exon 3248 3412 3248 ID=Msa1438410-mRNA-1:exon:11250;Parent=Msa1438410-mRNA-1
tig0028546 exon 3503 3622 3503 ID=Msa1438410-mRNA-1:exon:11251;Parent=Msa1438410-mRNA-1
tig0028546 exon 4137 4737 4137 ID=Msa1438410-mRNA-1:exon:11252;Parent=Msa1438410-mRNA-1
tig0028546 five_prime_UTR 2063 2178 2063 ID=Msa1438410-mRNA-1:five_prime_utr;Parent=Msa1438410-mRNA-1
tig0028546 CDS 2179 2224 2179 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 CDS 2636 2672 2636 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 CDS 2814 3024 2814 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 CDS 3248 3412 3248 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 CDS 3503 3622 3503 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 CDS 4137 4406 4137 ID=Msa1438410-mRNA-1:cds;Parent=Msa1438410-mRNA-1
tig0028546 three_prime_UTR 4407 4737 4407 ID=Msa1438410-mRNA-1:three_prime_utr;Parent=Msa1438410-mRNA-1
Gene Sequence

>Msa1438410

ATGGTTCACAGAGACAATACTGCGATTTTTGTAGTTGGTATTCTAGGTAACATTGCCTCTTTCTTTTGCTTTATAGCCCCCATATCAATATTTTATCAAGTTTGTAAGAAGAAAACAACAGGAGGTTTCCAATCTGCTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATATTTTATGCCTACATAAAAACGGGTGAAATGCTTATCATCACCATCAATGCATTTGGTTGTGTGATAGAAACAATTTACCTCGCCATCTATATCACTTATTGCTCCAAGAAAGCAAGGATCTTCACATTGAAGCTGATTGGGTTGTTTAATTTGGGAGGAATTTGCTTGGTGATTATTCTAACACATGTTCTAGCAAAAGAACGAACAGAACGTATCGAACTTCTTGGATGGATTTGTGTTGTCCTCTCAACTAGTGTTTTTGCAGCACCTTTAAGCGTTATGAGAGTGGTTATTCGCACCAAAAGTGTAGAGTTTATGCCTTTCACTCTTTCACTCCTTCTCACAACAAGTGCAATTATATGGCTGTGCTATGGTATTCTCCTCAAAGATATATTTGTTACGCTTCCGAACTTTGTGGGTATCACATTTGGAACAATTCAGATGGTGTTGTATGCAATATACAGAAAAAACAAGCCTGTAAATGATCAAAAGCTACCAGAACACAAAGATGATATCAATGAGAATCAGCTTCAAGTAGTAGTGATCCCTCTTCAAAATGTTGTTCATATTGAGACTACAATGGAGAATAAAGAAGAGAAGCAAGAAGAGAAGAAACAGGAAGAAACAAAACCAAGTGAAGGAAATCAAGTACAACAACAAAAGGAAGGTTGA

Protein sequence

>Msa1438410

MVHRDNTAIFVVGILGNIASFFCFIAPISIFYQVCKKKTTGGFQSAPYVAALFSAMLWIFYAYIKTGEMLIITINAFGCVIETIYLAIYITYCSKKARIFTLKLIGLFNLGGICLVIILTHVLAKERTERIELLGWICVVLSTSVFAAPLSVMRVVIRTKSVEFMPFTLSLLLTTSAIIWLCYGILLKDIFVTLPNFVGITFGTIQMVLYAIYRKNKPVNDQKLPEHKDDINENQLQVVVIPLQNVVHIETTMENKEEKQEEKKQEETKPSEGNQVQQQKEG*