AlfalfaGEDB | Msa0842370

M. sativa cultivar zhongmu-4 / Msa0842370

KEGG: K14272
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004021 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006950 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009853 GO:0009987 GO:0016020 GO:0016740 GO:0016769 GO:0036293 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0047635 GO:0047958 GO:0048046 GO:0050896 GO:0070482
PFAM: PF00155.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842370	XP_003613139.1	98.753	481	6	0	1	481	1	481	0.0	982

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842370	sp\|Q9S7E9\|GGT2_ARATH	84.823	481	73	0	1	481	1	481	0.0	866

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842370	G7JYY7	98.753	481	6	0	1	481	1	481	0.0	982

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0842370	0.845635	3.592419e-59	-8.615850e-47
Msa0000610	Msa0842370	0.862914	3.614437e-64	-8.615850e-47
Msa0001040	Msa0842370	0.843534	1.320942e-58	-8.615850e-47
Msa0001510	Msa0842370	0.891871	2.674183e-74	-8.615850e-47
Msa0001540	Msa0842370	0.821836	3.266840e-53	-8.615850e-47
Msa0002110	Msa0842370	0.865495	5.665893e-65	-8.615850e-47
Msa0002690	Msa0842370	0.926390	5.009816e-91	-8.615850e-47
Msa0002700	Msa0842370	0.919397	4.736628e-87	-8.615850e-47
Msa0003340	Msa0842370	0.845457	4.013109e-59	-8.615850e-47
Msa0003370	Msa0842370	0.802045	6.760125e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842370	MtrunA17_Chr5g0412871	98.753	481	6	0	1	481	1	481	0.0	982
Msa0842370	MtrunA17_Chr8g0345201	49.378	482	233	3	3	474	44	524	2.56e-166	479
Msa0842370	MtrunA17_Chr6g0475681	24.868	378	250	14	93	463	173	523	2.26e-22	100
Msa0842370	MtrunA17_Chr7g0248681	26.953	256	172	9	100	352	86	329	2.74e-19	90.5
Msa0842370	MtrunA17_Chr8g0387481	26.012	346	225	14	100	438	87	408	6.17e-19	89.4
Msa0842370	MtrunA17_Chr6g0488041	25.784	287	191	11	94	376	84	352	8.13e-19	88.6
Msa0842370	MtrunA17_Chr3g0135251	23.607	377	252	16	100	466	78	428	8.17e-19	89.0
Msa0842370	MtrunA17_Chr2g0324801	24.211	380	235	12	74	440	17	356	1.36e-18	87.4
Msa0842370	MtrunA17_Chr8g0389311	25.649	308	208	13	103	407	83	372	8.36e-18	85.5
Msa0842370	MtrunA17_Chr8g0389321	25.649	308	208	13	103	407	83	372	8.36e-18	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0842370	AT1G70580.4	84.823	481	73	0	1	481	1	481	0.0	866
Msa0842370	AT1G70580.2	84.823	481	73	0	1	481	1	481	0.0	866
Msa0842370	AT1G70580.3	84.823	481	73	0	1	481	1	481	0.0	866
Msa0842370	AT1G70580.1	84.823	481	73	0	1	481	1	481	0.0	866
Msa0842370	AT1G23310.1	84.200	481	76	0	1	481	1	481	0.0	861
Msa0842370	AT1G23310.2	84.738	439	67	0	1	439	1	439	0.0	788
Msa0842370	AT1G72330.1	49.582	478	230	3	5	472	62	538	3.02e-169	488
Msa0842370	AT1G72330.3	48.269	491	230	4	5	472	62	551	1.17e-165	479
Msa0842370	AT1G17290.1	49.583	480	231	3	5	474	65	543	5.93e-164	474
Msa0842370	AT1G72330.2	49.570	349	165	3	5	343	62	409	4.46e-116	348

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Find 149 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTCAACCTTATTATT+TGG	0.103405	5_4:-19421157	Msa0842370:three_prime_UTR
AAAGTTCAATGATGATTTCA+TGG	0.322465	5_4:-19421581	Msa0842370:CDS
AAATCCTGAGCCAGGAACAG+TGG	0.624773	5_4:+19422600	None:intergenic
AAGATGATTGTTTGCCATCA+TGG	0.374038	5_4:+19421379	None:intergenic
AAGCTTCAACCTTATTATTT+GGG	0.297059	5_4:-19421156	None:intergenic
AAGGCTCAGTATGCTGTCAG+AGG	0.653659	5_4:-19427774	Msa0842370:CDS
AAGTGGCAGAGTTTATACAG+AGG	0.671960	5_4:-19425407	Msa0842370:CDS
AATACTATAATCAGAGGCGA+AGG	0.605176	5_4:-19425181	Msa0842370:CDS
AATATTTGTGCTGGAACATT+TGG	0.293542	5_4:+19423510	None:intergenic
AATCACTAAGAAGAAGAGCA+AGG	0.628553	5_4:-19422911	Msa0842370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTATTGTCAATAGATAACA+AGG	+	chr5_4:19421312-19421331	None:intergenic	30.0%
ACTGAAAAAAAGGGTTCAAA+AGG	+	chr5_4:19421400-19421419	None:intergenic	30.0%
ATCATAGCCACTGAAAAAAA+GGG	+	chr5_4:19421409-19421428	None:intergenic	30.0%
AATCATAGCCACTGAAAAAA+AGG	+	chr5_4:19421410-19421429	None:intergenic	30.0%
GGTCATTTCATCATGTTATA+TGG	+	chr5_4:19421634-19421653	None:intergenic	30.0%
AATTGCAAAGAAACCGAAAA+AGG	+	chr5_4:19421813-19421832	None:intergenic	30.0%
TTTGTAATTGTACCATCATG+TGG	-	chr5_4:19422172-19422191	Msa0842370:intron	30.0%
TCATAGATCATAACATACCA+TGG	+	chr5_4:19422230-19422249	None:intergenic	30.0%
TTAATCCAACGGATAAGATT+TGG	+	chr5_4:19422279-19422298	None:intergenic	30.0%
CAACTGTTAGATTAATCCAA+CGG	+	chr5_4:19422290-19422309	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	19421157	19429426	19421157	ID=Msa0842370;Name=Msa0842370
chr5_4	mRNA	19421157	19429426	19421157	ID=Msa0842370-mRNA-1;Parent=Msa0842370;Name=Msa0842370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=479\|1\|1\|1\|0.85\|0.73\|15\|366\|481
chr5_4	exon	19421157	19421221	19421157	ID=Msa0842370-mRNA-1:exon:8113;Parent=Msa0842370-mRNA-1
chr5_4	exon	19421242	19421672	19421242	ID=Msa0842370-mRNA-1:exon:8112;Parent=Msa0842370-mRNA-1
chr5_4	exon	19422586	19422742	19422586	ID=Msa0842370-mRNA-1:exon:8111;Parent=Msa0842370-mRNA-1
chr5_4	exon	19422856	19422947	19422856	ID=Msa0842370-mRNA-1:exon:8110;Parent=Msa0842370-mRNA-1
chr5_4	exon	19423339	19423403	19423339	ID=Msa0842370-mRNA-1:exon:8109;Parent=Msa0842370-mRNA-1
chr5_4	exon	19423509	19423574	19423509	ID=Msa0842370-mRNA-1:exon:8108;Parent=Msa0842370-mRNA-1
chr5_4	exon	19424421	19424552	19424421	ID=Msa0842370-mRNA-1:exon:8107;Parent=Msa0842370-mRNA-1
chr5_4	exon	19424640	19424813	19424640	ID=Msa0842370-mRNA-1:exon:8106;Parent=Msa0842370-mRNA-1
chr5_4	exon	19424929	19425087	19424929	ID=Msa0842370-mRNA-1:exon:8105;Parent=Msa0842370-mRNA-1
chr5_4	exon	19425174	19425261	19425174	ID=Msa0842370-mRNA-1:exon:8104;Parent=Msa0842370-mRNA-1
chr5_4	exon	19425390	19425471	19425390	ID=Msa0842370-mRNA-1:exon:8103;Parent=Msa0842370-mRNA-1
chr5_4	exon	19426632	19426749	19426632	ID=Msa0842370-mRNA-1:exon:8102;Parent=Msa0842370-mRNA-1
chr5_4	exon	19426924	19426989	19426924	ID=Msa0842370-mRNA-1:exon:8101;Parent=Msa0842370-mRNA-1
chr5_4	exon	19427728	19427874	19427728	ID=Msa0842370-mRNA-1:exon:8100;Parent=Msa0842370-mRNA-1
chr5_4	exon	19428978	19429426	19428978	ID=Msa0842370-mRNA-1:exon:8099;Parent=Msa0842370-mRNA-1
chr5_4	five_prime_UTR	19428978	19429426	19428978	ID=Msa0842370-mRNA-1:five_prime_utr;Parent=Msa0842370-mRNA-1
chr5_4	five_prime_UTR	19427845	19427874	19427845	ID=Msa0842370-mRNA-1:five_prime_utr;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19427728	19427844	19427728	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19426924	19426989	19426924	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19426632	19426749	19426632	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19425390	19425471	19425390	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19425174	19425261	19425174	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19424929	19425087	19424929	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19424640	19424813	19424640	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19424421	19424552	19424421	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19423509	19423574	19423509	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19423339	19423403	19423339	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19422856	19422947	19422856	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19422586	19422742	19422586	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	CDS	19421543	19421672	19421543	ID=Msa0842370-mRNA-1:cds;Parent=Msa0842370-mRNA-1
chr5_4	three_prime_UTR	19421242	19421542	19421242	ID=Msa0842370-mRNA-1:three_prime_utr;Parent=Msa0842370-mRNA-1
chr5_4	three_prime_UTR	19421157	19421221	19421157	ID=Msa0842370-mRNA-1:three_prime_utr;Parent=Msa0842370-mRNA-1

Gene Sequence

>Msa0842370

ATGCCACCAAAGCCCTTAGACTATGAGTCGATTAATGAAAACGTGAAGAAGGCTCAGTATGCTGTCAGAGGTGAATTGTACCTTCGAGCTACCGAGCTTCAGAAGGAGGGCAAAAAGATTATATTCACTAATGTTGGAAACCCACATGCTTTGGGACAGAAACCACTGACCTTCCCTCGCCAGGTTGTTGCCTTGTGCCAGGCTCCATTCCTACTTGATGATCCTAACGTTGGACTGCTATTCCCCGCTGATGCAATTGCAAGAGCTAAGCAGTATCTCTCATTCACATCGGGTGGTTTAGGTGCTTATAGTGATTCTCGAGGCACTCCAGCAGTGAGGAAGGAAGTGGCAGAGTTTATACAGAGGCGTGATGGTTATCCAAGTGATCCAGAGTTCATCTATCTTACTGATGGTGCGAGCAAGGCTGTGATGCAGATATTAAATACTATAATCAGAGGCGAAGGAGATGGGATTATGGTTCCAGTCCCACAATACCCACTCTACTCTGCAACAATTGCTCTTCTTGGTGGTACTCTTGTTCCATACTACCTCGAAGAGACAGCAAATTGGGGTCTTGATACTAATGAACTTCGAAAATCAGTTAGAGAGGCTCGCTATAAAGGATTAAATGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGCCAGTGCCTTAGTGAAGAGAATTTAAGAGAGGTTTTGCAATTTTGTTATGAAGAAAATTTAGTCTTGCTTGGAGATGAGGTTTACCAGACAAATATATATCAGGATGAGCGACCCTTCATTAGTGCCAAAAAGGTTTTGATGGATATGGGGCCACCTTTAAGCAAGGAAGTCCAGCTTGTTTCTTTTCACTCAGTGTCGAAAGGGTATTTTGGTGAATGTGGACAACGTGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGACTGTTGACGAGATCTATAAAGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTATGGGACTAATGATCAATCCACCCAAACCTGGAGATATTTCTTACGACAAATTTGTTAGGGAGAGCAAAGGAATACTTGAATCACTAAGAAGAAGAGCAAGGATCATGACTGATGGATTCAACAGCTGCAGGAATGTTGTTTGCAATTTCACAGAAGGTGCCATGTATTCATTCCCTCAAATAAAACTGCCACCAAAAGCTTTAGAGACTGCTAAACAGGCTGGAAAAGCTGCAGATGTTTACTACTGTCTCAAGCTTTTGGAAGCCACTGGCATATCCACTGTTCCTGGCTCAGGATTTGGACAGAAAGAAGGGGTTTTCCATTTGAGGACAACTATATTACCAGCTGAGGAAGAAATGCCTGCTATTATGGATAGTTTCAAAAAGTTCAATGATGATTTCATGGAACAATATGATGACCACAGAGGTTATTCAAGGTTGTAA

Protein sequence

>Msa0842370

MPPKPLDYESINENVKKAQYAVRGELYLRATELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKQYLSFTSGGLGAYSDSRGTPAVRKEVAEFIQRRDGYPSDPEFIYLTDGASKAVMQILNTIIRGEGDGIMVPVPQYPLYSATIALLGGTLVPYYLEETANWGLDTNELRKSVREARYKGLNVKAMVIINPGNPTGQCLSEENLREVLQFCYEENLVLLGDEVYQTNIYQDERPFISAKKVLMDMGPPLSKEVQLVSFHSVSKGYFGECGQRGGYFEMTNIPPETVDEIYKVASISLSPNVPAQIFMGLMINPPKPGDISYDKFVRESKGILESLRRRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPKALETAKQAGKAADVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPAIMDSFKKFNDDFMEQYDDHRGYSRL*