AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131530 MtrunA17_Chr4g0073941 98.363 733 8 2 1 731 1 731 0.0 1479
Msa1131530 MtrunA17_Chr4g0001481 64.286 742 246 10 1 727 1 738 0.0 949
Msa1131530 MtrunA17_Chr3g0126541 55.448 725 303 8 12 729 1 712 0.0 812
Msa1131530 MtrunA17_Chr1g0158861 57.018 684 277 8 55 729 40 715 0.0 800
Msa1131530 MtrunA17_Chr2g0305771 54.948 677 272 9 80 731 22 690 0.0 752
Msa1131530 MtrunA17_Chr3g0139071 55.275 673 265 9 87 731 61 725 0.0 736
Msa1131530 MtrunA17_Chr2g0326871 51.385 722 323 12 13 728 4 703 0.0 726
Msa1131530 MtrunA17_Chr7g0275581 51.681 714 307 11 38 727 16 715 0.0 715
Msa1131530 MtrunA17_Chr4g0028861 56.187 598 252 6 67 660 90 681 0.0 712
Msa1131530 MtrunA17_Chr1g0181121 52.096 668 298 11 78 731 24 683 0.0 700
Msa1131530 MtrunA17_Chr7g0228181 50.617 648 293 8 98 728 43 680 0.0 674
Msa1131530 MtrunA17_Chr8g0347121 49.627 671 295 8 95 725 56 723 0.0 670
Msa1131530 MtrunA17_Chr3g0125651 48.892 677 309 8 88 731 20 692 0.0 669
Msa1131530 MtrunA17_Chr6g0481021 41.297 586 302 13 99 660 123 690 3.51e-131 404
Msa1131530 MtrunA17_Chr6g0480671 39.899 594 322 13 98 673 192 768 6.61e-126 393
Msa1131530 MtrunA17_Chr8g0360821 38.380 568 331 10 101 656 64 624 4.74e-125 388
Msa1131530 MtrunA17_Chr6g0480851 39.794 583 316 13 99 663 184 749 3.91e-122 383
Msa1131530 MtrunA17_Chr6g0480781 36.960 579 331 12 99 659 169 731 7.77e-118 372
Msa1131530 MtrunA17_Chr7g0218341 38.542 576 326 11 98 656 108 672 4.11e-113 358
Msa1131530 MtrunA17_Chr6g0480741 35.826 575 330 12 98 653 114 668 1.62e-100 324
Msa1131530 MtrunA17_Chr2g0318561 38.126 459 254 12 215 656 2 447 4.48e-94 301
Msa1131530 MtrunA17_Chr6g0480681 34.043 611 330 19 99 661 115 700 1.72e-91 301
Msa1131530 MtrunA17_Chr5g0395421 38.310 355 188 11 297 637 18 355 8.85e-60 206
Msa1131530 MtrunA17_Chr2g0326861 43.147 197 106 3 174 368 14 206 8.84e-50 174
Msa1131530 MtrunA17_Chr6g0480771 38.492 252 132 6 420 658 12 253 1.17e-39 148
Msa1131530 MtrunA17_Chr5g0395411 36.744 215 114 5 99 312 172 365 1.33e-36 141
Msa1131530 MtrunA17_Chr6g0480841 40.909 198 97 5 474 658 2 192 3.61e-33 127
Msa1131530 MtrunA17_Chr2g0326851 50.382 131 60 4 599 726 3 131 1.20e-30 117
Msa1131530 MtrunA17_Chr6g0480751 32.710 214 126 4 4 216 19 215 7.10e-26 106
Msa1131530 MtrunA17_Chr6g0480791 40.164 122 72 1 99 219 172 293 3.31e-23 100
Msa1131530 MtrunA17_Chr6g0480821 32.919 161 97 6 227 384 37 189 1.09e-17 82.8
Msa1131530 MtrunA17_Chr2g0318551 33.533 167 92 6 97 259 61 212 4.04e-16 78.2
Msa1131530 MtrunA17_Chr3g0138671 22.200 491 291 16 91 577 39 442 9.29e-16 81.3
Msa1131530 MtrunA17_Chr8g0356081 19.533 471 280 11 99 560 40 420 1.64e-15 80.5
Msa1131530 MtrunA17_Chr6g0480761 31.847 157 95 5 233 384 16 165 2.57e-15 75.5
Msa1131530 MtrunA17_Chr4g0063141 25.728 206 150 2 373 577 238 441 7.61e-15 78.6
Msa1131530 MtrunA17_Chr5g0434371 21.385 491 303 16 67 554 49 459 4.06e-14 76.3
Msa1131530 MtrunA17_Chr2g0277651 24.044 183 138 1 374 556 262 443 1.05e-12 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131530 AT5G57940.1 77.500 720 156 4 12 728 1 717 0.0 1142
Msa1131530 AT5G57940.2 77.500 720 156 4 12 728 1 717 0.0 1142
Msa1131530 AT5G57940.3 76.944 720 153 5 12 728 1 710 0.0 1129
Msa1131530 AT2G23980.9 73.592 746 180 7 1 729 1 746 0.0 1117
Msa1131530 AT2G23980.10 73.592 746 180 7 1 729 1 746 0.0 1117
Msa1131530 AT2G23980.1 73.592 746 180 7 1 729 1 746 0.0 1117
Msa1131530 AT2G23980.4 73.592 746 180 7 1 729 1 746 0.0 1117
Msa1131530 AT2G23980.5 73.592 746 180 7 1 729 1 746 0.0 1117
Msa1131530 AT2G23980.3 71.391 769 180 8 1 729 1 769 0.0 1103
Msa1131530 AT2G23980.2 71.391 769 180 8 1 729 1 769 0.0 1103
Msa1131530 AT2G23980.8 71.391 769 180 8 1 729 1 769 0.0 1103
Msa1131530 AT2G23980.7 71.391 769 180 8 1 729 1 769 0.0 1103
Msa1131530 AT2G23980.6 74.687 719 168 6 25 729 1 719 0.0 1102
Msa1131530 AT4G30560.1 73.352 728 182 5 8 729 10 731 0.0 1099
Msa1131530 AT4G30560.4 73.352 728 182 5 8 729 10 731 0.0 1099
Msa1131530 AT4G30560.5 74.121 711 172 5 25 729 1 705 0.0 1088
Msa1131530 AT4G30560.2 74.121 711 172 5 25 729 1 705 0.0 1088
Msa1131530 AT4G30560.3 74.121 711 172 5 25 729 1 705 0.0 1088
Msa1131530 AT1G19780.1 67.467 750 218 5 7 731 2 750 0.0 1021
Msa1131530 AT1G15990.1 67.160 743 217 9 7 728 2 738 0.0 1002
Msa1131530 AT5G53130.1 56.579 684 280 6 55 729 41 716 0.0 790
Msa1131530 AT1G01340.2 55.733 689 271 9 66 728 26 706 0.0 785
Msa1131530 AT1G01340.1 55.733 689 271 9 66 728 21 701 0.0 784
Msa1131530 AT4G01010.1 55.694 641 265 5 94 726 63 692 0.0 750
Msa1131530 AT4G01010.2 55.694 641 265 5 94 726 63 692 0.0 750
Msa1131530 AT1G19780.2 68.831 539 145 4 215 731 2 539 0.0 750
Msa1131530 AT2G28260.1 53.275 687 287 11 49 728 19 678 0.0 726
Msa1131530 AT2G28260.2 54.476 659 269 9 76 728 5 638 0.0 724
Msa1131530 AT2G24610.1 53.333 675 275 8 87 729 60 726 0.0 716
Msa1131530 AT2G24610.2 53.333 675 275 8 87 729 75 741 0.0 714
Msa1131530 AT4G30360.1 53.625 662 270 10 97 731 69 720 0.0 712
Msa1131530 AT2G46430.1 50.218 689 319 9 55 730 29 706 0.0 709
Msa1131530 AT2G46430.2 50.218 689 319 9 55 730 29 706 0.0 709
Msa1131530 AT5G14870.1 50.075 671 294 8 98 731 39 705 0.0 683
Msa1131530 AT3G48010.1 50.075 665 292 10 98 725 43 704 0.0 675
Msa1131530 AT2G46440.1 46.766 603 304 9 97 691 28 621 0.0 538
Msa1131530 AT2G46450.4 42.812 626 327 10 110 728 40 641 3.30e-174 514
Msa1131530 AT2G46450.1 42.812 626 327 10 110 728 40 641 3.30e-174 514
Msa1131530 AT2G46450.3 41.534 626 312 11 110 728 27 605 4.56e-164 487
Msa1131530 AT2G46450.2 41.315 639 320 12 97 728 28 618 9.88e-164 486
Msa1131530 AT2G46440.2 49.777 448 212 7 252 691 1 443 5.16e-143 426
Msa1131530 AT3G17690.1 38.185 584 322 14 99 664 158 720 2.45e-126 393
Msa1131530 AT3G17700.1 38.986 572 314 14 99 653 192 745 3.32e-119 375
Msa1131530 AT5G54250.2 37.069 580 332 13 98 656 78 645 1.48e-115 364
Msa1131530 AT5G54250.1 37.069 580 332 13 98 656 78 645 1.48e-115 364
Msa1131530 AT5G54250.4 37.069 580 332 13 98 656 78 645 1.48e-115 364
Msa1131530 AT5G15410.1 37.955 577 338 9 92 653 106 677 9.16e-115 363
Msa1131530 AT5G15410.2 37.955 577 338 9 92 653 105 676 9.52e-115 363
Msa1131530 AT3G17690.2 38.586 495 275 10 99 584 158 632 6.87e-113 355
Msa1131530 AT5G54250.3 36.379 580 331 14 98 656 78 640 7.51e-110 349
Msa1131530 AT3G17700.2 39.157 498 280 11 99 591 192 671 2.96e-107 342
Msa1131530 AT3G17690.3 36.031 383 223 8 88 461 147 516 9.92e-75 251
Msa1131530 AT3G02850.2 21.368 468 286 15 94 558 69 457 5.48e-17 85.9
Msa1131530 AT3G02850.1 21.627 467 286 14 94 558 69 457 7.01e-17 85.5
Msa1131530 AT3G02850.3 21.368 468 286 15 94 558 69 457 1.12e-16 84.7
Msa1131530 AT2G26650.1 19.672 488 288 10 99 577 49 441 3.19e-16 83.6
Msa1131530 AT5G37500.1 21.692 461 281 14 97 556 55 436 1.03e-14 78.6
Msa1131530 AT5G37500.2 21.692 461 281 14 97 556 55 436 1.16e-14 78.6
Msa1131530 AT5G37500.4 21.475 461 282 14 97 556 55 436 1.59e-14 77.8
Msa1131530 AT5G37500.3 22.103 466 273 16 95 556 3 382 5.27e-13 73.2
Msa1131530 AT4G22200.2 22.995 187 143 1 374 560 263 448 1.85e-12 71.2
Msa1131530 AT4G22200.1 22.995 187 143 1 374 560 263 448 3.94e-12 70.5
Msa1131530 AT5G46240.1 22.000 200 155 1 373 572 245 443 1.21e-11 68.6
Msa1131530 AT2G26650.2 20.250 400 232 8 187 577 15 336 2.05e-11 68.2
Msa1131530 AT4G32650.2 23.913 184 139 1 375 558 276 458 6.22e-11 66.2
Msa1131530 AT4G32650.3 23.913 184 139 1 375 558 276 458 7.30e-11 66.2
Msa1131530 AT4G32650.1 23.913 184 139 1 375 558 276 458 7.43e-11 66.2

Find 189 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATATCTTTACTGTTTA+TGG 0.022733 7_3:+84102189 Msa1131530:CDS
CAATTGTAATATTGAAATTA+TGG 0.130935 7_3:+84105017 Msa1131530:three_prime_UTR
GCTCCATCATCTCGTGTCTT+TGG 0.178515 7_3:+84100571 Msa1131530:CDS
ACACGCTCTCTAAGCTCTTT+TGG 0.222016 7_3:-84103500 None:intergenic
CTCTTAAGTTCTGAAGTTAA+TGG 0.232977 7_3:-84101663 None:intergenic
ATTATGGGTTGGAAGAATTA+AGG 0.233547 7_3:+84105033 Msa1131530:three_prime_UTR
GCCTAACTGGCTGTCATATT+AGG 0.256859 7_3:+84104961 Msa1131530:three_prime_UTR
CTCCATCATCTCGTGTCTTT+GGG 0.266985 7_3:+84100572 Msa1131530:CDS
TCTGAAGGACTGAAATTAAT+TGG 0.268732 7_3:+84100250 Msa1131530:CDS
TCAGACACTTTAAGATCTTC+TGG 0.270701 7_3:-84100310 None:intergenic
CAATGTAAGCCGTGCGAAAT+TGG 0.274977 7_3:-84100549 None:intergenic
GATGTCAGAGTTACAAAATC+TGG 0.296654 7_3:+84100145 Msa1131530:CDS
TATGACTGAACTTGTGAAAA+AGG 0.303288 7_3:+84104889 Msa1131530:three_prime_UTR
GGTTCCACTATTTGAGAGTA+TGG 0.306379 7_3:+84104154 Msa1131530:intron
TCAATAGCACTTGCCATATC+AGG 0.329052 7_3:+84102823 Msa1131530:CDS
GGCAAACTTTGAGGCTAATA+AGG 0.330312 7_3:-84104708 None:intergenic
ATCCTCTTCGCGCTTCTGAT+TGG 0.344987 7_3:+84102850 Msa1131530:CDS
CAGAGAATACTTATATTGTT+CGG 0.346563 7_3:+84104228 Msa1131530:CDS
AGCTCCCGCCCATGCAGTTT+CGG 0.347462 7_3:-84101703 None:intergenic
CAATGATGAATTACACTGTC+TGG 0.350794 7_3:+84100447 Msa1131530:CDS
AAATTAATTACCTTAAATTC+TGG 0.365686 7_3:-84102220 None:intergenic
TTTCAGCTCATCGGCGGTTA+AGG 0.369784 7_3:-84104471 None:intergenic
TAGTATACATTAAGCCTAAC+TGG 0.380548 7_3:+84104948 Msa1131530:three_prime_UTR
ACTGATTATTTGCAGATAGT+TGG 0.381899 7_3:+84101915 Msa1131530:intron
AATTGTAATATTGAAATTAT+GGG 0.384376 7_3:+84105018 Msa1131530:three_prime_UTR
GATCCTTCCTCCTTGTTGTT+CGG 0.392824 7_3:+84098737 Msa1131530:five_prime_UTR
TGACTATTATTGCCAACTTT+CGG 0.399473 7_3:-84100477 None:intergenic
ATCTTTACTGTTTATGGTGG+GGG 0.405257 7_3:+84102195 Msa1131530:CDS
ATCATCTCGTGTCTTTGGGC+GGG 0.405515 7_3:+84100576 Msa1131530:CDS
CTTGTAATCAGATTGTTGTT+TGG 0.406927 7_3:+84101538 Msa1131530:intron
TCACTGCAGTACCCTTGGTC+AGG 0.408201 7_3:+84102762 Msa1131530:intron
ATATCTCTTCGAAGATCCTT+TGG 0.408228 7_3:-84103593 None:intergenic
TATTAAGCGTCATCTCTGTT+TGG 0.412230 7_3:+84103613 Msa1131530:CDS
CTCTCATTTCCTCCAGCCTA+AGG 0.417185 7_3:-84103433 None:intergenic
ATGAAAAGCATCTCATCAAC+TGG 0.418687 7_3:-84104260 None:intergenic
TTTAAGCAAGCCTTGTCATC+TGG 0.423538 7_3:+84102140 Msa1131530:CDS
TGGAAGATTAGAACCAGATC+TGG 0.424177 7_3:-84104402 None:intergenic
GGTACCATTCGAAGAAATCT+AGG 0.424271 7_3:-84101642 None:intergenic
TAGAACCAGATCTGGGGTCC+AGG 0.433905 7_3:-84104394 None:intergenic
AGAGAATACTTATATTGTTC+GGG 0.441039 7_3:+84104229 Msa1131530:CDS
ATCTGTGTTGCCAGTACCAC+AGG 0.445249 7_3:+84100669 Msa1131530:CDS
CACTATAACCTTCCGTGTGC+TGG 0.445320 7_3:-84102037 None:intergenic
TGGGCCCTGGACCCCAGATC+TGG 0.448919 7_3:+84104389 Msa1131530:CDS
ATCGACTCGCAAAGACTGCC+AGG 0.450934 7_3:+84104759 Msa1131530:CDS
ACCTAATATGACAGCCAGTT+AGG 0.451204 7_3:-84104962 None:intergenic
CGCCCAAAGACACGAGATGA+TGG 0.455061 7_3:-84100574 None:intergenic
GTGTCTTTGCCGAAACTGCA+TGG 0.456842 7_3:+84101694 Msa1131530:CDS
TTTCAACCGCACATATCTAA+AGG 0.457653 7_3:+84104334 Msa1131530:CDS
TCAGTCCCTTACCCTTAGGC+TGG 0.460097 7_3:+84103421 Msa1131530:CDS
TAATAAGGCGGCACCAAGGC+TGG 0.460595 7_3:-84104693 None:intergenic
GAAGAGGATGAGACCTGATA+TGG 0.460796 7_3:-84102836 None:intergenic
TGCTTTCTATTTGCTAAACA+TGG 0.461201 7_3:+84100522 Msa1131530:CDS
AAATTAATTGGTCGATCACT+TGG 0.464219 7_3:+84100262 Msa1131530:CDS
AACGGCAGTTCCTCCAGCCT+TGG 0.469815 7_3:+84104680 Msa1131530:CDS
TTTCCTCCAGCCTAAGGGTA+AGG 0.471966 7_3:-84103427 None:intergenic
TCATCCATACTCTCAAATAG+TGG 0.476542 7_3:-84104158 None:intergenic
TCTGCTGTAAAGTCAGGCTC+AGG 0.479099 7_3:-84104806 None:intergenic
ACTCTCAACAATGGAGAACC+TGG 0.480377 7_3:+84104555 Msa1131530:CDS
CATCATCTCGTGTCTTTGGG+CGG 0.483109 7_3:+84100575 Msa1131530:CDS
TCATCTCGTGTCTTTGGGCG+GGG 0.485159 7_3:+84100577 Msa1131530:CDS
TGGTTTCAGTCTCTCACATA+TGG 0.485163 7_3:-84104195 None:intergenic
TTACTTCACTGCAGTACCCT+TGG 0.485316 7_3:+84102757 Msa1131530:intron
CTGTTTGGCTTTAGTGAGGA+GGG 0.485661 7_3:+84103628 Msa1131530:CDS
CGCAAAGACTGCCAGGGAGT+TGG 0.489302 7_3:+84104766 Msa1131530:CDS
AATTGGTCGATCACTTGGAC+TGG 0.493849 7_3:+84100267 Msa1131530:CDS
ATATCTTTACTGTTTATGGT+GGG 0.494622 7_3:+84102193 Msa1131530:CDS
TTGGTCGATCACTTGGACTG+GGG 0.495877 7_3:+84100269 Msa1131530:CDS
GGGCGAGCTTGTGATAGATT+CGG 0.504640 7_3:+84100597 Msa1131530:CDS
TAGCAAATAGAAAGCATCAA+TGG 0.505414 7_3:-84100515 None:intergenic
GCATCATCTGCTGTAAAGTC+AGG 0.505947 7_3:-84104812 None:intergenic
ACACGGAAGGTTATAGTGCC+TGG 0.506802 7_3:+84102042 Msa1131530:CDS
TTCAAACTAGCACATATCCT+GGG 0.507377 7_3:+84102788 Msa1131530:CDS
TCAGAACTTAAGAGAACAGC+TGG 0.509746 7_3:+84101672 Msa1131530:CDS
CTTCAAACTAGCACATATCC+TGG 0.511018 7_3:+84102787 Msa1131530:CDS
TATCTTTACTGTTTATGGTG+GGG 0.514479 7_3:+84102194 Msa1131530:CDS
AATATCTTTACTGTTTATGG+TGG 0.516798 7_3:+84102192 Msa1131530:CDS
TAGACGTCTTCACAGTAGAC+AGG 0.517455 7_3:+84104511 Msa1131530:CDS
TTGAATAAAACAAGCAGCCC+AGG 0.520184 7_3:-84104573 None:intergenic
GGAAGATTAGAACCAGATCT+GGG 0.521641 7_3:-84104401 None:intergenic
GTAATATTGAAATTATGGGT+TGG 0.523418 7_3:+84105022 Msa1131530:three_prime_UTR
CTTTGCCGAAACTGCATGGG+CGG 0.524201 7_3:+84101698 Msa1131530:CDS
ATCTTCAGTCCCTTACCCTT+AGG 0.524427 7_3:+84103417 Msa1131530:CDS
TAAAGGAGGCTGAGTTCTGT+GGG 0.524904 7_3:+84104351 Msa1131530:CDS
ATTGGTCGATCACTTGGACT+GGG 0.525084 7_3:+84100268 Msa1131530:CDS
AAATTAAACCATGGTAGTCA+TGG 0.526709 7_3:+84100181 Msa1131530:CDS
CACTGCAGTACCCTTGGTCA+GGG 0.528148 7_3:+84102763 Msa1131530:intron
TCTGTTTGGCTTTAGTGAGG+AGG 0.529031 7_3:+84103627 Msa1131530:CDS
AGTGCGCGCGGCAAACTTTG+AGG 0.530370 7_3:-84104717 None:intergenic
CTAATCTTCCAACCTCTACT+CGG 0.532003 7_3:+84104414 Msa1131530:CDS
GGAATGAGAAAGGGATCTGA+AGG 0.534084 7_3:+84100235 Msa1131530:CDS
AGAATGCTTGCCGTGACAAT+GGG 0.537644 7_3:+84101985 Msa1131530:CDS
ACAGTTTCTCTCTCTCTATG+AGG 0.539148 7_3:+84098842 Msa1131530:five_prime_UTR
TTGTAATTTCACCAACTCCC+TGG 0.539371 7_3:-84104777 None:intergenic
CAGAATGCTTGCCGTGACAA+TGG 0.542017 7_3:+84101984 Msa1131530:CDS
TTGTTTGGAGATTTCTTCAG+AGG 0.547801 7_3:+84101553 Msa1131530:CDS
TTTGCCGAAACTGCATGGGC+GGG 0.548314 7_3:+84101699 Msa1131530:CDS
TTCCTCCAGCCTAAGGGTAA+GGG 0.548812 7_3:-84103426 None:intergenic
TGTCTTTGCCGAAACTGCAT+GGG 0.548973 7_3:+84101695 Msa1131530:CDS
TTCAATATTACAATTGACAA+CGG 0.549917 7_3:-84105010 None:intergenic
AATTATGAAGCTTCGTCAGA+AGG 0.551043 7_3:+84104625 Msa1131530:CDS
ATCTCTGTTTGGCTTTAGTG+AGG 0.554542 7_3:+84103624 Msa1131530:CDS
ACCACAGATGGTGGGAGGAG+TGG 0.554774 7_3:+84104308 Msa1131530:CDS
TGATTACAAATCACAGTACA+TGG 0.555003 7_3:+84099810 Msa1131530:CDS
ATGGAAGCAGCACAACCTCT+AGG 0.556003 7_3:+84100200 Msa1131530:CDS
TGTAATTCATCATTGATGAC+AGG 0.556688 7_3:-84100439 None:intergenic
GCTTCTGATTGGCAACATGC+AGG 0.559066 7_3:+84102861 Msa1131530:CDS
GTCCCTTACCCTTAGGCTGG+AGG 0.561500 7_3:+84103424 Msa1131530:CDS
GGCAACAAATTTCAGCTCAT+CGG 0.562924 7_3:-84104480 None:intergenic
AATGATGAATTACACTGTCT+GGG 0.563593 7_3:+84100448 Msa1131530:CDS
ACCTAAAAGAACTTTCTCGC+TGG 0.565973 7_3:-84099837 None:intergenic
CTGCTGTAAAGTCAGGCTCA+GGG 0.566862 7_3:-84104805 None:intergenic
AGCATCAATGGCTGTCCTCA+AGG 0.567403 7_3:-84100503 None:intergenic
CTTGAGAGTGTTACCACAGA+TGG 0.567620 7_3:+84104296 Msa1131530:CDS
GTGGTACTGGCAACACAGAT+AGG 0.568795 7_3:-84100666 None:intergenic
TTCACAGTCCGAGTAGAGGT+TGG 0.569798 7_3:-84104422 None:intergenic
CGCCTTCACAGTCCGAGTAG+AGG 0.572148 7_3:-84104426 None:intergenic
TTGAACGCAATGACTCATGC+TGG 0.573357 7_3:+84101961 Msa1131530:CDS
AACAAATTTCAGCTCATCGG+CGG 0.575197 7_3:-84104477 None:intergenic
TATTCCTAGATTTCTTCGAA+TGG 0.576328 7_3:+84101638 Msa1131530:CDS
TGGAGGAAATGAGAGTCAAA+AGG 0.578064 7_3:+84103441 Msa1131530:CDS
ATTGAAAAGATAACCTCCCC+AGG 0.578411 7_3:-84102805 None:intergenic
CTAAAGGAGGCTGAGTTCTG+TGG 0.580756 7_3:+84104350 Msa1131530:CDS
AATACTTATATTGTTCGGGA+AGG 0.582365 7_3:+84104233 Msa1131530:CDS
AGTTTGAAGCCCCTGACCAA+GGG 0.585386 7_3:-84102773 None:intergenic
GTCAAACATCTTTCAACAGT+AGG 0.587623 7_3:-84099782 None:intergenic
ATTCCATAATCAAAAGGTGG+AGG 0.588062 7_3:-84102116 None:intergenic
ACCACTCCTCCCACCATCTG+TGG 0.589869 7_3:-84104309 None:intergenic
GTATGATCAATATAAGTGGT+TGG 0.589892 7_3:+84103529 Msa1131530:CDS
AGAACCAGATCTGGGGTCCA+GGG 0.590157 7_3:-84104393 None:intergenic
TCTCATTTCCTCCAGCCTAA+GGG 0.590500 7_3:-84103432 None:intergenic
TGGTCGATCACTTGGACTGG+GGG 0.590891 7_3:+84100270 Msa1131530:CDS
CATGGCTCTCCAATTTCGCA+CGG 0.593225 7_3:+84100540 Msa1131530:CDS
GAGAGTGTTACCACAGATGG+TGG 0.593359 7_3:+84104299 Msa1131530:CDS
TATAATACAATTATTTACAA+AGG 0.594456 7_3:-84104927 None:intergenic
CAGTCTTTGCGAGTCGATTG+CGG 0.595562 7_3:-84104754 None:intergenic
GGCGGTATGATCAATATAAG+TGG 0.596596 7_3:+84103525 Msa1131530:CDS
GTGAAGACGTCTAAACTGAC+TGG 0.596611 7_3:-84104501 None:intergenic
AAGAGCTTAGAGAGCGTGTG+AGG 0.598434 7_3:+84103504 Msa1131530:CDS
GTATTCTCTGTAAATAAACA+TGG 0.598980 7_3:-84104215 None:intergenic
TAGTTTGAAGCCCCTGACCA+AGG 0.599761 7_3:-84102774 None:intergenic
TTTAGTTCAGAGTCTACCAA+AGG 0.600713 7_3:+84103577 Msa1131530:CDS
ACGGTAAATAAGTTACATGC+TGG 0.600732 7_3:-84104991 None:intergenic
TACAAATCACAGTACATGGA+TGG 0.601736 7_3:+84099814 Msa1131530:CDS
ACTGCAGTACCCTTGGTCAG+GGG 0.604670 7_3:+84102764 Msa1131530:intron
GCACCGAACAACAAGGAGGA+AGG 0.608922 7_3:-84098740 None:intergenic
GCTGTAAAGTCAGGCTCAGG+GGG 0.609315 7_3:-84104803 None:intergenic
TCAGAAGGAAGTCACGGCAA+CGG 0.612473 7_3:+84104662 Msa1131530:CDS
TGCTGCTTCCATGACTACCA+TGG 0.616363 7_3:-84100189 None:intergenic
AAAATTCCATAATCAAAAGG+TGG 0.620323 7_3:-84102119 None:intergenic
TCTGGGTATAGACCGAAAGT+TGG 0.620416 7_3:+84100465 Msa1131530:CDS
TGTGAGAACCAGCACACGGA+AGG 0.621184 7_3:+84102029 Msa1131530:CDS
AGCTTAGAGAGCGTGTGAGG+CGG 0.621829 7_3:+84103507 Msa1131530:CDS
CAGCCTCCTTTAGATATGTG+CGG 0.623629 7_3:-84104340 None:intergenic
AGTATTGATAAATTAAACCA+TGG 0.625061 7_3:+84100172 Msa1131530:CDS
TGATGTACTAGCAACAAAGC+AGG 0.625485 7_3:+84101587 Msa1131530:CDS
TGCTGTAAAGTCAGGCTCAG+GGG 0.626056 7_3:-84104804 None:intergenic
GAAGAAGCGGATGAGTCAGA+AGG 0.626874 7_3:+84104647 Msa1131530:CDS
AACCTCTACTCGGACTGTGA+AGG 0.629479 7_3:+84104424 Msa1131530:CDS
GTAAATAAGTTACATGCTGG+TGG 0.631706 7_3:-84104988 None:intergenic
CTCTCAACAATGGAGAACCT+GGG 0.633749 7_3:+84104556 Msa1131530:CDS
CAACCGCACATATCTAAAGG+AGG 0.635378 7_3:+84104337 Msa1131530:CDS
GCTTCGTCAGAAGGAAGAAG+CGG 0.637094 7_3:+84104634 Msa1131530:CDS
AAAGGCGTGATTCAGAACAA+TGG 0.640001 7_3:+84103459 Msa1131530:CDS
TGAAATGATACCAGATGACA+AGG 0.640327 7_3:-84102150 None:intergenic
GATGAGTCAGAAGGAAGTCA+CGG 0.642746 7_3:+84104656 Msa1131530:CDS
CAATAATAGTCACCACCTTG+AGG 0.647111 7_3:+84100488 Msa1131530:CDS
TATAAGTGGTTGGCAACACG+TGG 0.647524 7_3:+84103539 Msa1131530:CDS
TGCCAATCAGAAGCGCGAAG+AGG 0.647772 7_3:-84102852 None:intergenic
GGAGGCTGAGTTCTGTGGGG+AGG 0.650785 7_3:+84104355 Msa1131530:CDS
AAACTTTGAGGCTAATAAGG+CGG 0.650978 7_3:-84104705 None:intergenic
TACACCACGGAGAGTGCGCG+CGG 0.651777 7_3:-84104729 None:intergenic
ACTGTGATTTGTAATCACTT+CGG 0.652558 7_3:-84099804 None:intergenic
AACTAGCACATATCCTGGGG+AGG 0.659235 7_3:+84102792 Msa1131530:CDS
AAACTCTGCACCGAACAACA+AGG 0.661797 7_3:-84098747 None:intergenic
GACTGTGAAGGCGTTAACAG+AGG 0.662573 7_3:+84104436 Msa1131530:CDS
AGGCTAATAAGGCGGCACCA+AGG 0.669575 7_3:-84104697 None:intergenic
AGAGTGTTACCACAGATGGT+GGG 0.670648 7_3:+84104300 Msa1131530:CDS
AAGCAAGATAATGAACAGCA+AGG 0.671349 7_3:-84101610 None:intergenic
TCGACTCGCAAAGACTGCCA+GGG 0.672240 7_3:+84104760 Msa1131530:CDS
GTCGATTGCGGTGTACACCA+CGG 0.672348 7_3:-84104742 None:intergenic
GTGTTACCACAGATGGTGGG+AGG 0.679578 7_3:+84104303 Msa1131530:CDS
ATCAATGGCTGTCCTCAAGG+TGG 0.685135 7_3:-84100500 None:intergenic
AAACAGTGGATCCACAAACA+CGG 0.686841 7_3:-84100407 None:intergenic
TCAAACTAGCACATATCCTG+GGG 0.691393 7_3:+84102789 Msa1131530:CDS
GTATTGTGAGAACCAGCACA+CGG 0.712309 7_3:+84102025 Msa1131530:CDS
GAAGATTAGAACCAGATCTG+GGG 0.716370 7_3:-84104400 None:intergenic
TGAAAGTGAAGTTGAAGTTG+CGG 0.721956 7_3:-84098819 None:intergenic
CTCTGCACCGAACAACAAGG+AGG 0.732981 7_3:-84098744 None:intergenic
AAAGGAGGCTGAGTTCTGTG+GGG 0.741818 7_3:+84104352 Msa1131530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTATTTATTTTTTTT+TGG + chr7_3:84100871-84100890 Msa1131530:intron 0.0%
!!! TTATTTATTTATTTTTTTTT+GGG + chr7_3:84100872-84100891 Msa1131530:intron 0.0%
!! TAAAATTAAAGCAATTAAAT+TGG - chr7_3:84098888-84098907 None:intergenic 10.0%
!!! TTTAATTGCTTTAATTTTAA+TGG + chr7_3:84098889-84098908 Msa1131530:intron 10.0%
!! TAACAAAAACAAAAAAAAAA+TGG - chr7_3:84098997-84099016 None:intergenic 10.0%
!!! TGTATGTATATTTTTATTTT+TGG + chr7_3:84099099-84099118 Msa1131530:intron 10.0%
!!! ATTTATTTATTTTTTTTTGG+GGG + chr7_3:84100874-84100893 Msa1131530:intron 10.0%
!!! TCTTATAAATTTTTCTAATA+TGG + chr7_3:84101094-84101113 Msa1131530:intron 10.0%
!! TATAATACAATTATTTACAA+AGG - chr7_3:84104930-84104949 None:intergenic 10.0%
!! AATTGTAATATTGAAATTAT+GGG + chr7_3:84105018-84105037 Msa1131530:three_prime_UTR 10.0%
!! TAAATTATTTCATGATCATA+AGG + chr7_3:84099067-84099086 Msa1131530:intron 15.0%
!! ATAGTAGATTTATTTACATA+TGG + chr7_3:84099531-84099550 Msa1131530:intron 15.0%
!! TAGTAGATTTATTTACATAT+GGG + chr7_3:84099532-84099551 Msa1131530:intron 15.0%
!!! TCTTTTTCATTTTTTTTTCT+AGG + chr7_3:84100086-84100105 Msa1131530:intron 15.0%
!!! TTTATTTATTTTTTTTTGGG+GGG + chr7_3:84100875-84100894 Msa1131530:intron 15.0%
!! AGAATATAAAAAGAAAACAA+AGG - chr7_3:84101520-84101539 None:intergenic 15.0%
!! TTAAAAATTCCATAATCAAA+AGG - chr7_3:84102125-84102144 None:intergenic 15.0%
!! AAATTAATTACCTTAAATTC+TGG - chr7_3:84102223-84102242 None:intergenic 15.0%
!! TAAGAAATATGATAAAATAG+AGG + chr7_3:84102946-84102965 Msa1131530:intron 15.0%
!! ATATATTATAAATGTTACTG+AGG + chr7_3:84103367-84103386 Msa1131530:intron 15.0%
!!! AAAAATATTTGGTTCTTTAT+CGG - chr7_3:84103735-84103754 None:intergenic 15.0%
!!! AATTCATTTACTTATTTTCA+TGG + chr7_3:84104124-84104143 Msa1131530:intron 15.0%
!! CAATTGTAATATTGAAATTA+TGG + chr7_3:84105017-84105036 Msa1131530:three_prime_UTR 15.0%
!!! TTATTTTGTGATTTGAGATT+AGG + chr7_3:84098715-84098734 Msa1131530:five_prime_UTR 20.0%
!! ATGGTTTAGATGATTAATAT+TGG + chr7_3:84099176-84099195 Msa1131530:intron 20.0%
!!! ACTTTAGGTTCATTTTTTTA+TGG + chr7_3:84099489-84099508 Msa1131530:intron 20.0%
!! AATAAATCTACTATATAACG+TGG - chr7_3:84099525-84099544 None:intergenic 20.0%
!! GAATAATTTAAAGAATGACA+TGG - chr7_3:84099607-84099626 None:intergenic 20.0%
!! TGCAATACTATAAATATTGT+TGG + chr7_3:84099710-84099729 Msa1131530:intron 20.0%
!!! TTTTCATTTTTTTTTCTAGG+TGG + chr7_3:84100089-84100108 Msa1131530:intron 20.0%
!!! TTTCATTTTTTTTTCTAGGT+GGG + chr7_3:84100090-84100109 Msa1131530:intron 20.0%
!!! AGTATTGATAAATTAAACCA+TGG + chr7_3:84100172-84100191 Msa1131530:CDS 20.0%
!!! TTTTAAAAAAGGAATGAGAA+AGG + chr7_3:84100225-84100244 Msa1131530:CDS 20.0%
!! TTTAAAAAAGGAATGAGAAA+GGG + chr7_3:84100226-84100245 Msa1131530:CDS 20.0%
!! TAAGAGTAAAAATTTGTCTT+GGG - chr7_3:84100353-84100372 None:intergenic 20.0%
!! ATAAGAGTAAAAATTTGTCT+TGG - chr7_3:84100354-84100373 None:intergenic 20.0%
!!! AAGACAAATTTTTACTCTTA+TGG + chr7_3:84100353-84100372 Msa1131530:CDS 20.0%
!!! CTGTACAATTATTTTTTCTT+TGG + chr7_3:84100736-84100755 Msa1131530:intron 20.0%
!!! TTATTTATTTTTTTTTGGGG+GGG + chr7_3:84100876-84100895 Msa1131530:intron 20.0%
!! AAGAATAAGTGCAATAAAAT+TGG + chr7_3:84100954-84100973 Msa1131530:intron 20.0%
!!! TGATTTGAAACTATTGAAAT+TGG + chr7_3:84101065-84101084 Msa1131530:intron 20.0%
!!! GATTTGAAACTATTGAAATT+GGG + chr7_3:84101066-84101085 Msa1131530:intron 20.0%
!!! ATTTGAAACTATTGAAATTG+GGG + chr7_3:84101067-84101086 Msa1131530:intron 20.0%
!! AAAATGATTGAGCTAAAAAT+AGG - chr7_3:84101178-84101197 None:intergenic 20.0%
!! TTAAAATTACAGTAGCAATA+AGG - chr7_3:84101472-84101491 None:intergenic 20.0%
!!! TTATTGCTACTGTAATTTTA+AGG + chr7_3:84101471-84101490 Msa1131530:intron 20.0%
!! CAAAATATCTTTACTGTTTA+TGG + chr7_3:84102189-84102208 Msa1131530:CDS 20.0%
!! AACTTCAGAAATTAACATTA+AGG - chr7_3:84102339-84102358 None:intergenic 20.0%
!!! TAATGTTAATTTCTGAAGTT+AGG + chr7_3:84102339-84102358 Msa1131530:intron 20.0%
!! TATTTAATAGACCATATCAA+TGG + chr7_3:84102483-84102502 Msa1131530:intron 20.0%
!! ACAAATAATCAATGAAATCA+CGG - chr7_3:84102717-84102736 None:intergenic 20.0%
!! AAATATAGCAATTGTGAATA+TGG - chr7_3:84103011-84103030 None:intergenic 20.0%
!! TAGAGATATCATGTATAAAT+AGG - chr7_3:84103061-84103080 None:intergenic 20.0%
!!! ATATTTAAGTTTCTGTGTTA+TGG + chr7_3:84103223-84103242 Msa1131530:intron 20.0%
!!! TTTTCTACTGCAAAAATATT+TGG - chr7_3:84103746-84103765 None:intergenic 20.0%
!!! TTTGCTTTTCAAATTCTTTT+TGG + chr7_3:84103936-84103955 Msa1131530:intron 20.0%
!! TTCAATATTACAATTGACAA+CGG - chr7_3:84105013-84105032 None:intergenic 20.0%
!!! ATTAAGGTTGATTTTATTTG+TGG + chr7_3:84105049-84105068 Msa1131530:three_prime_UTR 20.0%
! AGTAAAAAACTAGCAACTTT+AGG + chr7_3:84099474-84099493 Msa1131530:intron 25.0%
!!! AATGTTTACTAAAAGCATCA+TGG - chr7_3:84099670-84099689 None:intergenic 25.0%
!! TGATGCTTTTAGTAAACATT+CGG + chr7_3:84099670-84099689 Msa1131530:intron 25.0%
! TTATAGTATTGCATTCTTCA+TGG - chr7_3:84099703-84099722 None:intergenic 25.0%
! ACATTGCAACGAAAATATAT+TGG - chr7_3:84099865-84099884 None:intergenic 25.0%
! TAATATTCCTGTTTATGAAC+CGG + chr7_3:84100026-84100045 Msa1131530:intron 25.0%
! AAGAGTAAAAATTTGTCTTG+GGG - chr7_3:84100352-84100371 None:intergenic 25.0%
! AATTGTACAGTATTTGCAAA+AGG - chr7_3:84100726-84100745 None:intergenic 25.0%
!!! TATTTATTTTTTTTTGGGGG+GGG + chr7_3:84100877-84100896 Msa1131530:intron 25.0%
! GGAGAATATAATATCATACT+TGG + chr7_3:84100975-84100994 Msa1131530:intron 25.0%
! AGTTTCAAATCAAAGAAAAC+AGG - chr7_3:84101057-84101076 None:intergenic 25.0%
!! TTAGTATAAACGATGCTTTT+TGG + chr7_3:84101226-84101245 Msa1131530:intron 25.0%
!!! TAGTATAAACGATGCTTTTT+GGG + chr7_3:84101227-84101246 Msa1131530:intron 25.0%
! TAAAAAGAAAACAAAGGCAA+GGG - chr7_3:84101514-84101533 None:intergenic 25.0%
! ATAAAAAGAAAACAAAGGCA+AGG - chr7_3:84101515-84101534 None:intergenic 25.0%
! AAAAAAAACACTTACATGAC+TGG - chr7_3:84101757-84101776 None:intergenic 25.0%
! TATACAACTCAAATAGAACA+AGG - chr7_3:84101807-84101826 None:intergenic 25.0%
! AAAGACCTAAAATACATTAG+TGG - chr7_3:84101888-84101907 None:intergenic 25.0%
! TATCTGCAAATAATCAGTAA+TGG - chr7_3:84101913-84101932 None:intergenic 25.0%
! AAAATTCCATAATCAAAAGG+TGG - chr7_3:84102122-84102141 None:intergenic 25.0%
! AATATCTTTACTGTTTATGG+TGG + chr7_3:84102192-84102211 Msa1131530:CDS 25.0%
! ATATCTTTACTGTTTATGGT+GGG + chr7_3:84102193-84102212 Msa1131530:CDS 25.0%
!!! AGTTAAGGTCATTGATTTTA+TGG + chr7_3:84102385-84102404 Msa1131530:intron 25.0%
!! AGTTTCTATGTCTAAAATAC+TGG + chr7_3:84102408-84102427 Msa1131530:intron 25.0%
! TATCTCAGAACTTCTTATAA+AGG + chr7_3:84102512-84102531 Msa1131530:intron 25.0%
! CAAATAATCAATGAAATCAC+GGG - chr7_3:84102716-84102735 None:intergenic 25.0%
! AAGTAAATGAAAATAGGTTG+CGG - chr7_3:84102743-84102762 None:intergenic 25.0%
! GAAATATGATAAAATAGAGG+AGG + chr7_3:84102949-84102968 Msa1131530:intron 25.0%
! GTATAAATAGGAGAATATGA+TGG - chr7_3:84103049-84103068 None:intergenic 25.0%
! TTTGTTAGGATATGAGATAA+GGG - chr7_3:84103132-84103151 None:intergenic 25.0%
! AACACAGAAACTTAAATATC+AGG - chr7_3:84103222-84103241 None:intergenic 25.0%
!!! TATTTTTATACTCATGCAGA+AGG - chr7_3:84103837-84103856 None:intergenic 25.0%
!! ATATAGTGTTTGAGATTTGT+TGG + chr7_3:84103854-84103873 Msa1131530:intron 25.0%
! GAAAATCAATCAGTGAAATA+AGG - chr7_3:84104028-84104047 None:intergenic 25.0%
!!! ACTTATTTTCATGGATTTGT+AGG + chr7_3:84104133-84104152 Msa1131530:intron 25.0%
! GTATTCTCTGTAAATAAACA+TGG - chr7_3:84104218-84104237 None:intergenic 25.0%
! CAGAGAATACTTATATTGTT+CGG + chr7_3:84104228-84104247 Msa1131530:CDS 25.0%
! AGAGAATACTTATATTGTTC+GGG + chr7_3:84104229-84104248 Msa1131530:CDS 25.0%
! GTAATATTGAAATTATGGGT+TGG + chr7_3:84105022-84105041 Msa1131530:three_prime_UTR 25.0%
TACGTGTTAGTCAATAGTAA+CGG + chr7_3:84099149-84099168 Msa1131530:intron 30.0%
AATGTGTGTTTGGAAATCAT+GGG + chr7_3:84099325-84099344 Msa1131530:intron 30.0%
!!! CCATCACAGCATTTTTTTTT+TGG - chr7_3:84099438-84099457 None:intergenic 30.0%
CCAAAAAAAAAATGCTGTGA+TGG + chr7_3:84099435-84099454 Msa1131530:intron 30.0%
! AAAAAAAATGCTGTGATGGA+AGG + chr7_3:84099439-84099458 Msa1131530:intron 30.0%
!! ATATTGTTTTGTTCATCTGC+AGG + chr7_3:84099745-84099764 Msa1131530:intron 30.0%
! ACTGTGATTTGTAATCACTT+CGG - chr7_3:84099807-84099826 None:intergenic 30.0%
TGATTACAAATCACAGTACA+TGG + chr7_3:84099810-84099829 Msa1131530:CDS 30.0%
! ATATTTTCGTTGCAATGTCA+TGG + chr7_3:84099867-84099886 Msa1131530:intron 30.0%
AACAATAGTGAAGTAACTAC+CGG - chr7_3:84100048-84100067 None:intergenic 30.0%
TTACTTCACTATTGTTTGAG+AGG + chr7_3:84100052-84100071 Msa1131530:intron 30.0%
AAATTAAACCATGGTAGTCA+TGG + chr7_3:84100181-84100200 Msa1131530:CDS 30.0%
!! ACCTCTAGGTCTTTTAAAAA+AGG + chr7_3:84100214-84100233 Msa1131530:CDS 30.0%
!!! TCCTTTTTTAAAAGACCTAG+AGG - chr7_3:84100218-84100237 None:intergenic 30.0%
TCTGAAGGACTGAAATTAAT+TGG + chr7_3:84100250-84100269 Msa1131530:CDS 30.0%
AAATTAATTGGTCGATCACT+TGG + chr7_3:84100262-84100281 Msa1131530:CDS 30.0%
ACAGGAAGATAAAAAAACAG+TGG - chr7_3:84100424-84100443 None:intergenic 30.0%
! TGTAATTCATCATTGATGAC+AGG - chr7_3:84100442-84100461 None:intergenic 30.0%
AATGATGAATTACACTGTCT+GGG + chr7_3:84100448-84100467 Msa1131530:CDS 30.0%
TGACTATTATTGCCAACTTT+CGG - chr7_3:84100480-84100499 None:intergenic 30.0%
!! TAGCAAATAGAAAGCATCAA+TGG - chr7_3:84100518-84100537 None:intergenic 30.0%
! TGCTTTCTATTTGCTAAACA+TGG + chr7_3:84100522-84100541 Msa1131530:CDS 30.0%
AAGATAACAGAGAACATTGT+TGG - chr7_3:84100788-84100807 None:intergenic 30.0%
!!! ATTTATTTTTTTTTGGGGGG+GGG + chr7_3:84100878-84100897 Msa1131530:intron 30.0%
! GATATACTGAACCCTTATTT+CGG + chr7_3:84101257-84101276 Msa1131530:intron 30.0%
! ATATACTGAACCCTTATTTC+GGG + chr7_3:84101258-84101277 Msa1131530:intron 30.0%
TTGAACATGTTAGTGAATGT+CGG - chr7_3:84101383-84101402 None:intergenic 30.0%
! CTTGTAATCAGATTGTTGTT+TGG + chr7_3:84101538-84101557 Msa1131530:intron 30.0%
TATTCCTAGATTTCTTCGAA+TGG + chr7_3:84101638-84101657 Msa1131530:CDS 30.0%
!! CTCTTAAGTTCTGAAGTTAA+TGG - chr7_3:84101666-84101685 None:intergenic 30.0%
ACTGATTATTTGCAGATAGT+TGG + chr7_3:84101915-84101934 Msa1131530:intron 30.0%
TATCTTTACTGTTTATGGTG+GGG + chr7_3:84102194-84102213 Msa1131530:CDS 30.0%
CTTATCCTTCAATTGAGTTA+AGG + chr7_3:84102370-84102389 Msa1131530:intron 30.0%
AATGACCTTAACTCAATTGA+AGG - chr7_3:84102378-84102397 None:intergenic 30.0%
TAATAGACCATATCAATGGT+AGG + chr7_3:84102487-84102506 Msa1131530:intron 30.0%
AATAGACCATATCAATGGTA+GGG + chr7_3:84102488-84102507 Msa1131530:intron 30.0%
GCAGTGAAGTAAATGAAAAT+AGG - chr7_3:84102749-84102768 None:intergenic 30.0%
ACGTATCGTAAAAGTAAGAA+TGG + chr7_3:84102907-84102926 Msa1131530:intron 30.0%
ATGGTATTCTCTATTGTGAA+GGG - chr7_3:84102992-84103011 None:intergenic 30.0%
TATGGTATTCTCTATTGTGA+AGG - chr7_3:84102993-84103012 None:intergenic 30.0%
TTGTTAGGATATGAGATAAG+GGG - chr7_3:84103131-84103150 None:intergenic 30.0%
! GTTTGTTAGGATATGAGATA+AGG - chr7_3:84103133-84103152 None:intergenic 30.0%
ATTGTTAGGATGAGATAAGA+GGG - chr7_3:84103158-84103177 None:intergenic 30.0%
TGAGAATATGAGTATGTGTT+AGG - chr7_3:84103199-84103218 None:intergenic 30.0%
CTTCATAGTTGAGAACTATA+TGG + chr7_3:84103251-84103270 Msa1131530:intron 30.0%
GTGCTCATGTAAATAACATT+TGG - chr7_3:84103284-84103303 None:intergenic 30.0%
TGAAGATATGTCTGCAATAA+CGG - chr7_3:84103404-84103423 None:intergenic 30.0%
GTATGATCAATATAAGTGGT+TGG + chr7_3:84103529-84103548 Msa1131530:CDS 30.0%
!! TGAGTTGATGAAATAGTTCA+TGG - chr7_3:84103912-84103931 None:intergenic 30.0%
GATTAAGTTAATCTACCAGA+GGG - chr7_3:84104075-84104094 None:intergenic 30.0%
TGATTAAGTTAATCTACCAG+AGG - chr7_3:84104076-84104095 None:intergenic 30.0%
AATACTTATATTGTTCGGGA+AGG + chr7_3:84104233-84104252 Msa1131530:CDS 30.0%
!! TTCGTTTTTACTCTCAACAA+TGG + chr7_3:84104546-84104565 Msa1131530:CDS 30.0%
TATGACTGAACTTGTGAAAA+AGG + chr7_3:84104889-84104908 Msa1131530:three_prime_UTR 30.0%
TAGTATACATTAAGCCTAAC+TGG + chr7_3:84104948-84104967 Msa1131530:three_prime_UTR 30.0%
!! ATTATGGGTTGGAAGAATTA+AGG + chr7_3:84105033-84105052 Msa1131530:three_prime_UTR 30.0%
TGAAAGTGAAGTTGAAGTTG+CGG - chr7_3:84098822-84098841 None:intergenic 35.0%
TTGGAGAGAGAAGAAGAAAA+CGG - chr7_3:84098869-84098888 None:intergenic 35.0%
! TTAACAAGAAAAGCACAGTG+AGG - chr7_3:84098956-84098975 None:intergenic 35.0%
!! TGGTGATTTGCTGTATCATA+AGG + chr7_3:84099119-84099138 Msa1131530:intron 35.0%
AGTCAATAGTAACGGCAATA+TGG + chr7_3:84099157-84099176 Msa1131530:intron 35.0%
!!! TCTCTCTCAGGGTTTTATTT+GGG - chr7_3:84099219-84099238 None:intergenic 35.0%
!!! TTCTCTCTCAGGGTTTTATT+TGG - chr7_3:84099220-84099239 None:intergenic 35.0%
! CTTTGTTTGTTTCTCTCTCA+GGG - chr7_3:84099230-84099249 None:intergenic 35.0%
! TCTTTGTTTGTTTCTCTCTC+AGG - chr7_3:84099231-84099250 None:intergenic 35.0%
TTTCTCTTCTCATCACATCA+TGG - chr7_3:84099286-84099305 None:intergenic 35.0%
CGTTGAATTGAATGTGTGTT+TGG + chr7_3:84099315-84099334 Msa1131530:intron 35.0%
GAATGTGTGTTTGGAAATCA+TGG + chr7_3:84099324-84099343 Msa1131530:intron 35.0%
TCTTTCCTATGGGAATAAGA+GGG + chr7_3:84099407-84099426 Msa1131530:intron 35.0%
!! TACATATGGGTTTTAACACC+TGG + chr7_3:84099545-84099564 Msa1131530:intron 35.0%
!! TGCTCAAGATTACTTTTACC+AGG - chr7_3:84099566-84099585 None:intergenic 35.0%
!!! TGAGCATGAGTTTCTAGTTT+TGG + chr7_3:84099580-84099599 Msa1131530:intron 35.0%
!!! GAGCATGAGTTTCTAGTTTT+GGG + chr7_3:84099581-84099600 Msa1131530:intron 35.0%
GTCAAACATCTTTCAACAGT+AGG - chr7_3:84099785-84099804 None:intergenic 35.0%
TACAAATCACAGTACATGGA+TGG + chr7_3:84099814-84099833 Msa1131530:CDS 35.0%
ATGTCTTTCTCTGATCTAGA+TGG + chr7_3:84099999-84100018 Msa1131530:intron 35.0%
TGTCTTTCTCTGATCTAGAT+GGG + chr7_3:84100000-84100019 Msa1131530:intron 35.0%
! TTTTTCTAGGTGGGATTTCT+TGG + chr7_3:84100099-84100118 Msa1131530:intron 35.0%
GATGTCAGAGTTACAAAATC+TGG + chr7_3:84100145-84100164 Msa1131530:CDS 35.0%
!! TCAGACACTTTAAGATCTTC+TGG - chr7_3:84100313-84100332 None:intergenic 35.0%
!!! ATGCATTTTTTCCGTGTTTG+TGG + chr7_3:84100396-84100415 Msa1131530:CDS 35.0%
CAATGATGAATTACACTGTC+TGG + chr7_3:84100447-84100466 Msa1131530:CDS 35.0%
GCAGCGAAAATATTATCTCA+TGG - chr7_3:84100824-84100843 None:intergenic 35.0%
!!! TTTATTTTTTTTTGGGGGGG+GGG + chr7_3:84100879-84100898 Msa1131530:intron 35.0%
CACTTATTCTTTCTTCTCTC+GGG - chr7_3:84100945-84100964 None:intergenic 35.0%
GCACTTATTCTTTCTTCTCT+CGG - chr7_3:84100946-84100965 None:intergenic 35.0%
ATGCAACAAGATTGGTGTAT+TGG - chr7_3:84101033-84101052 None:intergenic 35.0%
AAACAGGTATGCAACAAGAT+TGG - chr7_3:84101041-84101060 None:intergenic 35.0%
!! GCTCAATCATTTTTGTTAGC+TGG + chr7_3:84101185-84101204 Msa1131530:intron 35.0%
!! TATAAACGATGCTTTTTGGG+TGG + chr7_3:84101230-84101249 Msa1131530:intron 35.0%
TTGTTTGGAGATTTCTTCAG+AGG + chr7_3:84101553-84101572 Msa1131530:CDS 35.0%
AAGCAAGATAATGAACAGCA+AGG - chr7_3:84101613-84101632 None:intergenic 35.0%
CAAATAGAACAAGGAAGCAA+AGG - chr7_3:84101798-84101817 None:intergenic 35.0%
! CTCTGCCACTAATGTATTTT+AGG + chr7_3:84101880-84101899 Msa1131530:intron 35.0%
ATTCCATAATCAAAAGGTGG+AGG - chr7_3:84102119-84102138 None:intergenic 35.0%
TGAAATGATACCAGATGACA+AGG - chr7_3:84102153-84102172 None:intergenic 35.0%
ATCTTTACTGTTTATGGTGG+GGG + chr7_3:84102195-84102214 Msa1131530:CDS 35.0%
! TTGTCCAGATAAGAGTGTAT+TGG + chr7_3:84102259-84102278 Msa1131530:intron 35.0%
AAGTCCAATACACTCTTATC+TGG - chr7_3:84102266-84102285 None:intergenic 35.0%
TACAGAGCAAAGTAATGAGT+GGG - chr7_3:84102309-84102328 None:intergenic 35.0%
TTACAGAGCAAAGTAATGAG+TGG - chr7_3:84102310-84102329 None:intergenic 35.0%
AGATAACCCTACCATTGATA+TGG - chr7_3:84102497-84102516 None:intergenic 35.0%
!!! GTTCTAAAGCCTGCATTTTT+TGG + chr7_3:84102541-84102560 Msa1131530:intron 35.0%
TGAAACAAGCCAAAAAATGC+AGG - chr7_3:84102553-84102572 None:intergenic 35.0%
!!! TTTTGGCTTGTTTCACGTTT+TGG + chr7_3:84102558-84102577 Msa1131530:intron 35.0%
TAATCAATGAAATCACGGGA+GGG - chr7_3:84102712-84102731 None:intergenic 35.0%
ATAATCAATGAAATCACGGG+AGG - chr7_3:84102713-84102732 None:intergenic 35.0%
TTCAAACTAGCACATATCCT+GGG + chr7_3:84102788-84102807 Msa1131530:CDS 35.0%
TGGTATTCTCTATTGTGAAG+GGG - chr7_3:84102991-84103010 None:intergenic 35.0%
GGATAACGAGGAGTTAAATA+GGG - chr7_3:84103092-84103111 None:intergenic 35.0%
AGGATAACGAGGAGTTAAAT+AGG - chr7_3:84103093-84103112 None:intergenic 35.0%
AGTAACAACATAGGATAACG+AGG - chr7_3:84103104-84103123 None:intergenic 35.0%
! AGATAAGAGGGAAGTTTGTT+AGG - chr7_3:84103146-84103165 None:intergenic 35.0%
GATTGTTAGGATGAGATAAG+AGG - chr7_3:84103159-84103178 None:intergenic 35.0%
AGTTGAGAACTATATGGCTA+TGG + chr7_3:84103257-84103276 Msa1131530:intron 35.0%
! TTTAGTTCAGAGTCTACCAA+AGG + chr7_3:84103577-84103596 Msa1131530:CDS 35.0%
ATATCTCTTCGAAGATCCTT+TGG - chr7_3:84103596-84103615 None:intergenic 35.0%
TATTAAGCGTCATCTCTGTT+TGG + chr7_3:84103613-84103632 Msa1131530:CDS 35.0%
TCTCTTACGTGTGACTAAAA+AGG + chr7_3:84103696-84103715 Msa1131530:intron 35.0%
! TCTCTCTTAGATTAGTTACC+TGG + chr7_3:84103885-84103904 Msa1131530:intron 35.0%
AACTCCAAAAAGTCACATAG+AGG - chr7_3:84103979-84103998 None:intergenic 35.0%
AAATTCGAAATTGATCCCTC+TGG + chr7_3:84104057-84104076 Msa1131530:intron 35.0%
TCATCCATACTCTCAAATAG+TGG - chr7_3:84104161-84104180 None:intergenic 35.0%
!! ATGAAAAGCATCTCATCAAC+TGG - chr7_3:84104263-84104282 None:intergenic 35.0%
TTTCAACCGCACATATCTAA+AGG + chr7_3:84104334-84104353 Msa1131530:CDS 35.0%
!!! CTTGTTTTATTCAAGCAGCA+TGG + chr7_3:84104582-84104601 Msa1131530:CDS 35.0%
AATTATGAAGCTTCGTCAGA+AGG + chr7_3:84104625-84104644 Msa1131530:CDS 35.0%
!! AAACTTTGAGGCTAATAAGG+CGG - chr7_3:84104708-84104727 None:intergenic 35.0%
GTAAATAAGTTACATGCTGG+TGG - chr7_3:84104991-84105010 None:intergenic 35.0%
ACGGTAAATAAGTTACATGC+TGG - chr7_3:84104994-84105013 None:intergenic 35.0%
ACAGTTTCTCTCTCTCTATG+AGG + chr7_3:84098842-84098861 Msa1131530:five_prime_UTR 40.0%
TTACAATTGTTGCCCAACTC+TGG + chr7_3:84099372-84099391 Msa1131530:intron 40.0%
TTATCAGGGTCTCTTTCCTA+TGG + chr7_3:84099396-84099415 Msa1131530:intron 40.0%
TATCAGGGTCTCTTTCCTAT+GGG + chr7_3:84099397-84099416 Msa1131530:intron 40.0%
CTCTTTCCTATGGGAATAAG+AGG + chr7_3:84099406-84099425 Msa1131530:intron 40.0%
TGTAACCCTCTTATTCCCAT+AGG - chr7_3:84099415-84099434 None:intergenic 40.0%
!! CTAAAAGCATCATGGTAGAG+AGG - chr7_3:84099662-84099681 None:intergenic 40.0%
ACCTAAAAGAACTTTCTCGC+TGG - chr7_3:84099840-84099859 None:intergenic 40.0%
!! GTAACTACCGGTTCATAAAC+AGG - chr7_3:84100036-84100055 None:intergenic 40.0%
AAACAGTGGATCCACAAACA+CGG - chr7_3:84100410-84100429 None:intergenic 40.0%
CAATAATAGTCACCACCTTG+AGG + chr7_3:84100488-84100507 Msa1131530:CDS 40.0%
! ACAGAAGTCTTTTCAACCTG+TGG - chr7_3:84100688-84100707 None:intergenic 40.0%
!! CAGAGAACATTGTTGGTAGT+TGG - chr7_3:84100781-84100800 None:intergenic 40.0%
TCCTCTTGCTTCTTACTCAT+AGG + chr7_3:84100846-84100865 Msa1131530:intron 40.0%
TCCTATGAGTAAGAAGCAAG+AGG - chr7_3:84100850-84100869 None:intergenic 40.0%
!!! TTATTTTTTTTTGGGGGGGG+GGG + chr7_3:84100880-84100899 Msa1131530:intron 40.0%
AGTGTTTGCCTATTTGTCTG+TGG - chr7_3:84101006-84101025 None:intergenic 40.0%
TGATGTACTAGCAACAAAGC+AGG + chr7_3:84101587-84101606 Msa1131530:CDS 40.0%
GGTACCATTCGAAGAAATCT+AGG - chr7_3:84101645-84101664 None:intergenic 40.0%
TCAGAACTTAAGAGAACAGC+TGG + chr7_3:84101672-84101691 Msa1131530:CDS 40.0%
!! TGCAGATAGTTGGTGCTTTT+TGG + chr7_3:84101925-84101944 Msa1131530:intron 40.0%
! TTTTGTTGCACCCATTGTCA+CGG - chr7_3:84101998-84102017 None:intergenic 40.0%
!!! AGCTTTGCTTTTGTTTTGCC+AGG - chr7_3:84102063-84102082 None:intergenic 40.0%
!! GATCCTCCACCTTTTGATTA+TGG + chr7_3:84102113-84102132 Msa1131530:CDS 40.0%
! TTTAAGCAAGCCTTGTCATC+TGG + chr7_3:84102140-84102159 Msa1131530:CDS 40.0%
! AGTGTATTGGACTTCCCTTT+TGG + chr7_3:84102272-84102291 Msa1131530:intron 40.0%
ACAGAGCAAAGTAATGAGTG+GGG - chr7_3:84102308-84102327 None:intergenic 40.0%
AGAGCAAAGCGCATATTGTA+GGG - chr7_3:84102671-84102690 None:intergenic 40.0%
AATCAATGAAATCACGGGAG+GGG - chr7_3:84102711-84102730 None:intergenic 40.0%
CTTCAAACTAGCACATATCC+TGG + chr7_3:84102787-84102806 Msa1131530:CDS 40.0%
TCAAACTAGCACATATCCTG+GGG + chr7_3:84102789-84102808 Msa1131530:CDS 40.0%
ATTGAAAAGATAACCTCCCC+AGG - chr7_3:84102808-84102827 None:intergenic 40.0%
TCAATAGCACTTGCCATATC+AGG + chr7_3:84102823-84102842 Msa1131530:CDS 40.0%
TTACGATACGTCAAGCTCAA+TGG - chr7_3:84102898-84102917 None:intergenic 40.0%
AATAGAGGAGGATCTCTCTA+AGG + chr7_3:84102961-84102980 Msa1131530:intron 40.0%
ATAGAGGAGGATCTCTCTAA+GGG + chr7_3:84102962-84102981 Msa1131530:intron 40.0%
GAGGAGTTAAATAGGGATGT+TGG - chr7_3:84103085-84103104 None:intergenic 40.0%
AGGGGAGTTAGTAACAACAT+AGG - chr7_3:84103113-84103132 None:intergenic 40.0%
AAGACAGTGAGGAGATTGTT+AGG - chr7_3:84103172-84103191 None:intergenic 40.0%
TGTTAGGACATAAGACAGTG+AGG - chr7_3:84103183-84103202 None:intergenic 40.0%
TGGAGGAAATGAGAGTCAAA+AGG + chr7_3:84103441-84103460 Msa1131530:CDS 40.0%
! AAAGGCGTGATTCAGAACAA+TGG + chr7_3:84103459-84103478 Msa1131530:CDS 40.0%
GGCGGTATGATCAATATAAG+TGG + chr7_3:84103525-84103544 Msa1131530:CDS 40.0%
!! ATCTCTGTTTGGCTTTAGTG+AGG + chr7_3:84103624-84103643 Msa1131530:CDS 40.0%
!!! ACACGTAAGAGAGAGTGTTT+TGG - chr7_3:84103688-84103707 None:intergenic 40.0%
ACTGCACAACAACATCAATG+TGG - chr7_3:84103789-84103808 None:intergenic 40.0%
GATGAAATAGTTCATGGACC+AGG - chr7_3:84103906-84103925 None:intergenic 40.0%
! AGTGCCTCTATGTGACTTTT+TGG + chr7_3:84103972-84103991 Msa1131530:intron 40.0%
GGTTCCACTATTTGAGAGTA+TGG + chr7_3:84104154-84104173 Msa1131530:intron 40.0%
TGGTTTCAGTCTCTCACATA+TGG - chr7_3:84104198-84104217 None:intergenic 40.0%
! GAGATGCTTTTCATCATACG+CGG + chr7_3:84104269-84104288 Msa1131530:CDS 40.0%
! AGATGCTTTTCATCATACGC+GGG + chr7_3:84104270-84104289 Msa1131530:CDS 40.0%
GAAGATTAGAACCAGATCTG+GGG - chr7_3:84104403-84104422 None:intergenic 40.0%
GGAAGATTAGAACCAGATCT+GGG - chr7_3:84104404-84104423 None:intergenic 40.0%
TGGAAGATTAGAACCAGATC+TGG - chr7_3:84104405-84104424 None:intergenic 40.0%
CTAATCTTCCAACCTCTACT+CGG + chr7_3:84104414-84104433 Msa1131530:CDS 40.0%
AACAAATTTCAGCTCATCGG+CGG - chr7_3:84104480-84104499 None:intergenic 40.0%
GGCAACAAATTTCAGCTCAT+CGG - chr7_3:84104483-84104502 None:intergenic 40.0%
TTGAATAAAACAAGCAGCCC+AGG - chr7_3:84104576-84104595 None:intergenic 40.0%
!! GGCAAACTTTGAGGCTAATA+AGG - chr7_3:84104711-84104730 None:intergenic 40.0%
TTGTAATTTCACCAACTCCC+TGG - chr7_3:84104780-84104799 None:intergenic 40.0%
ACCTAATATGACAGCCAGTT+AGG - chr7_3:84104965-84104984 None:intergenic 40.0%
!! GATCCTTCCTCCTTGTTGTT+CGG + chr7_3:84098737-84098756 Msa1131530:five_prime_UTR 45.0%
AAACTCTGCACCGAACAACA+AGG - chr7_3:84098750-84098769 None:intergenic 45.0%
GTGAGGAGAATGAATAGCGA+CGG - chr7_3:84098939-84098958 None:intergenic 45.0%
TTGCCCAACTCTGGATTATC+AGG + chr7_3:84099381-84099400 Msa1131530:intron 45.0%
TGCCCAACTCTGGATTATCA+GGG + chr7_3:84099382-84099401 Msa1131530:intron 45.0%
GACCCTGATAATCCAGAGTT+GGG - chr7_3:84099387-84099406 None:intergenic 45.0%
AGACCCTGATAATCCAGAGT+TGG - chr7_3:84099388-84099407 None:intergenic 45.0%
GTAGAGAGGCTGAAACAACT+TGG - chr7_3:84099648-84099667 None:intergenic 45.0%
! GCCAGCGAGAAAGTTCTTTT+AGG + chr7_3:84099836-84099855 Msa1131530:CDS 45.0%
GGAATGAGAAAGGGATCTGA+AGG + chr7_3:84100235-84100254 Msa1131530:CDS 45.0%
AATTGGTCGATCACTTGGAC+TGG + chr7_3:84100267-84100286 Msa1131530:CDS 45.0%
ATTGGTCGATCACTTGGACT+GGG + chr7_3:84100268-84100287 Msa1131530:CDS 45.0%
TCTGGGTATAGACCGAAAGT+TGG + chr7_3:84100465-84100484 Msa1131530:CDS 45.0%
CAATGTAAGCCGTGCGAAAT+TGG - chr7_3:84100552-84100571 None:intergenic 45.0%
CTCCATCATCTCGTGTCTTT+GGG + chr7_3:84100572-84100591 Msa1131530:CDS 45.0%
! ATATCGTCGCAAGTATCGCT+TGG - chr7_3:84100632-84100651 None:intergenic 45.0%
! GTCTTTTCAACCTGTGGTAC+TGG - chr7_3:84100682-84100701 None:intergenic 45.0%
!!! TATTTTTTTTTGGGGGGGGG+GGG + chr7_3:84100881-84100900 Msa1131530:intron 45.0%
TGGCAATGCCACAGACAAAT+AGG + chr7_3:84100995-84101014 Msa1131530:intron 45.0%
!!! ACGATGCTTTTTGGGTGGAT+TGG + chr7_3:84101235-84101254 Msa1131530:intron 45.0%
CCTTGTCTCTCCCGAAATAA+GGG - chr7_3:84101271-84101290 None:intergenic 45.0%
TCCTTGTCTCTCCCGAAATA+AGG - chr7_3:84101272-84101291 None:intergenic 45.0%
TGTCTTTGCCGAAACTGCAT+GGG + chr7_3:84101695-84101714 Msa1131530:CDS 45.0%
TTGAACGCAATGACTCATGC+TGG + chr7_3:84101961-84101980 Msa1131530:CDS 45.0%
AGAATGCTTGCCGTGACAAT+GGG + chr7_3:84101985-84102004 Msa1131530:CDS 45.0%
GTATTGTGAGAACCAGCACA+CGG + chr7_3:84102025-84102044 Msa1131530:CDS 45.0%
GGGGTGATTATGCACCAAAA+GGG - chr7_3:84102289-84102308 None:intergenic 45.0%
TGGGGTGATTATGCACCAAA+AGG - chr7_3:84102290-84102309 None:intergenic 45.0%
AAGCGCATATTGTAGGGATC+TGG - chr7_3:84102665-84102684 None:intergenic 45.0%
ATCAATGAAATCACGGGAGG+GGG - chr7_3:84102710-84102729 None:intergenic 45.0%
TTACTTCACTGCAGTACCCT+TGG + chr7_3:84102757-84102776 Msa1131530:intron 45.0%
GAAGAGGATGAGACCTGATA+TGG - chr7_3:84102839-84102858 None:intergenic 45.0%
ATCTTCAGTCCCTTACCCTT+AGG + chr7_3:84103417-84103436 Msa1131530:CDS 45.0%
TCTCATTTCCTCCAGCCTAA+GGG - chr7_3:84103435-84103454 None:intergenic 45.0%
! CACGCTCTCTAAGCTCTTTT+GGG - chr7_3:84103502-84103521 None:intergenic 45.0%
! ACACGCTCTCTAAGCTCTTT+TGG - chr7_3:84103503-84103522 None:intergenic 45.0%
TATAAGTGGTTGGCAACACG+TGG + chr7_3:84103539-84103558 Msa1131530:CDS 45.0%
!! TCTGTTTGGCTTTAGTGAGG+AGG + chr7_3:84103627-84103646 Msa1131530:CDS 45.0%
!! CTGTTTGGCTTTAGTGAGGA+GGG + chr7_3:84103628-84103647 Msa1131530:CDS 45.0%
!! CTTGAGAGTGTTACCACAGA+TGG + chr7_3:84104296-84104315 Msa1131530:CDS 45.0%
! AGAGTGTTACCACAGATGGT+GGG + chr7_3:84104300-84104319 Msa1131530:CDS 45.0%
CAACCGCACATATCTAAAGG+AGG + chr7_3:84104337-84104356 Msa1131530:CDS 45.0%
CAGCCTCCTTTAGATATGTG+CGG - chr7_3:84104343-84104362 None:intergenic 45.0%
TAAAGGAGGCTGAGTTCTGT+GGG + chr7_3:84104351-84104370 Msa1131530:CDS 45.0%
! TGGGGAGGAGCTTTTAACAT+GGG + chr7_3:84104370-84104389 Msa1131530:CDS 45.0%
GTGAAGACGTCTAAACTGAC+TGG - chr7_3:84104504-84104523 None:intergenic 45.0%
TAGACGTCTTCACAGTAGAC+AGG + chr7_3:84104511-84104530 Msa1131530:CDS 45.0%
ACTCTCAACAATGGAGAACC+TGG + chr7_3:84104555-84104574 Msa1131530:CDS 45.0%
CTCTCAACAATGGAGAACCT+GGG + chr7_3:84104556-84104575 Msa1131530:CDS 45.0%
GATGAGTCAGAAGGAAGTCA+CGG + chr7_3:84104656-84104675 Msa1131530:CDS 45.0%
GCATCATCTGCTGTAAAGTC+AGG - chr7_3:84104815-84104834 None:intergenic 45.0%
GCCTAACTGGCTGTCATATT+AGG + chr7_3:84104961-84104980 Msa1131530:three_prime_UTR 45.0%
!!! TTTTAAAAAAATAATTTTGA+AGG + chr7_3:84099019-84099038 Msa1131530:intron 5.0%
!!! TTTAAAAAAATAATTTTGAA+GGG + chr7_3:84099020-84099039 Msa1131530:intron 5.0%
!!! TATTTATTTATTTTTTTTTG+GGG + chr7_3:84100873-84100892 Msa1131530:intron 5.0%
GAATGAATAGCGACGGTGGA+CGG - chr7_3:84098932-84098951 None:intergenic 50.0%
AGGAGAATGAATAGCGACGG+TGG - chr7_3:84098936-84098955 None:intergenic 50.0%
! TGCTGCTTCCATGACTACCA+TGG - chr7_3:84100192-84100211 None:intergenic 50.0%
ATGGAAGCAGCACAACCTCT+AGG + chr7_3:84100200-84100219 Msa1131530:CDS 50.0%
TTGGTCGATCACTTGGACTG+GGG + chr7_3:84100269-84100288 Msa1131530:CDS 50.0%
!! ACTTGGACTGGGGGTATCTA+AGG + chr7_3:84100279-84100298 Msa1131530:CDS 50.0%
ATCAATGGCTGTCCTCAAGG+TGG - chr7_3:84100503-84100522 None:intergenic 50.0%
AGCATCAATGGCTGTCCTCA+AGG - chr7_3:84100506-84100525 None:intergenic 50.0%
CATGGCTCTCCAATTTCGCA+CGG + chr7_3:84100540-84100559 Msa1131530:CDS 50.0%
GCTCCATCATCTCGTGTCTT+TGG + chr7_3:84100571-84100590 Msa1131530:CDS 50.0%
CATCATCTCGTGTCTTTGGG+CGG + chr7_3:84100575-84100594 Msa1131530:CDS 50.0%
ATCATCTCGTGTCTTTGGGC+GGG + chr7_3:84100576-84100595 Msa1131530:CDS 50.0%
GGGCGAGCTTGTGATAGATT+CGG + chr7_3:84100597-84100616 Msa1131530:CDS 50.0%
!! GTGGTACTGGCAACACAGAT+AGG - chr7_3:84100669-84100688 None:intergenic 50.0%
ATCTGTGTTGCCAGTACCAC+AGG + chr7_3:84100669-84100688 Msa1131530:CDS 50.0%
!!! ATTTTTTTTTGGGGGGGGGG+GGG + chr7_3:84100882-84100901 Msa1131530:intron 50.0%
! CCCTTATTTCGGGAGAGACA+AGG + chr7_3:84101268-84101287 Msa1131530:intron 50.0%
GTGTCTTTGCCGAAACTGCA+TGG + chr7_3:84101694-84101713 Msa1131530:CDS 50.0%
CAGAATGCTTGCCGTGACAA+TGG + chr7_3:84101984-84102003 Msa1131530:CDS 50.0%
CACTATAACCTTCCGTGTGC+TGG - chr7_3:84102040-84102059 None:intergenic 50.0%
ACACGGAAGGTTATAGTGCC+TGG + chr7_3:84102042-84102061 Msa1131530:CDS 50.0%
TCAATGAAATCACGGGAGGG+GGG - chr7_3:84102709-84102728 None:intergenic 50.0%
! AGTTTGAAGCCCCTGACCAA+GGG - chr7_3:84102776-84102795 None:intergenic 50.0%
! TAGTTTGAAGCCCCTGACCA+AGG - chr7_3:84102777-84102796 None:intergenic 50.0%
AACTAGCACATATCCTGGGG+AGG + chr7_3:84102792-84102811 Msa1131530:CDS 50.0%
ATCCTCTTCGCGCTTCTGAT+TGG + chr7_3:84102850-84102869 Msa1131530:CDS 50.0%
GCTTCTGATTGGCAACATGC+AGG + chr7_3:84102861-84102880 Msa1131530:CDS 50.0%
TTCCTCCAGCCTAAGGGTAA+GGG - chr7_3:84103429-84103448 None:intergenic 50.0%
TTTCCTCCAGCCTAAGGGTA+AGG - chr7_3:84103430-84103449 None:intergenic 50.0%
CTCTCATTTCCTCCAGCCTA+AGG - chr7_3:84103436-84103455 None:intergenic 50.0%
! AAGAGCTTAGAGAGCGTGTG+AGG + chr7_3:84103504-84103523 Msa1131530:CDS 50.0%
!! GAGAGTGTTACCACAGATGG+TGG + chr7_3:84104299-84104318 Msa1131530:CDS 50.0%
CTAAAGGAGGCTGAGTTCTG+TGG + chr7_3:84104350-84104369 Msa1131530:CDS 50.0%
AAAGGAGGCTGAGTTCTGTG+GGG + chr7_3:84104352-84104371 Msa1131530:CDS 50.0%
! GTGGGGAGGAGCTTTTAACA+TGG + chr7_3:84104369-84104388 Msa1131530:CDS 50.0%
TTCACAGTCCGAGTAGAGGT+TGG - chr7_3:84104425-84104444 None:intergenic 50.0%
AACCTCTACTCGGACTGTGA+AGG + chr7_3:84104424-84104443 Msa1131530:CDS 50.0%
!! GACTGTGAAGGCGTTAACAG+AGG + chr7_3:84104436-84104455 Msa1131530:CDS 50.0%
TTTCAGCTCATCGGCGGTTA+AGG - chr7_3:84104474-84104493 None:intergenic 50.0%
GCTTCGTCAGAAGGAAGAAG+CGG + chr7_3:84104634-84104653 Msa1131530:CDS 50.0%
GAAGAAGCGGATGAGTCAGA+AGG + chr7_3:84104647-84104666 Msa1131530:CDS 50.0%
TCAGAAGGAAGTCACGGCAA+CGG + chr7_3:84104662-84104681 Msa1131530:CDS 50.0%
CAGTCTTTGCGAGTCGATTG+CGG - chr7_3:84104757-84104776 None:intergenic 50.0%
TGCTGTAAAGTCAGGCTCAG+GGG - chr7_3:84104807-84104826 None:intergenic 50.0%
CTGCTGTAAAGTCAGGCTCA+GGG - chr7_3:84104808-84104827 None:intergenic 50.0%
TCTGCTGTAAAGTCAGGCTC+AGG - chr7_3:84104809-84104828 None:intergenic 50.0%
GCACCGAACAACAAGGAGGA+AGG - chr7_3:84098743-84098762 None:intergenic 55.0%
CTCTGCACCGAACAACAAGG+AGG - chr7_3:84098747-84098766 None:intergenic 55.0%
! TGGTCGATCACTTGGACTGG+GGG + chr7_3:84100270-84100289 Msa1131530:CDS 55.0%
CGCCCAAAGACACGAGATGA+TGG - chr7_3:84100577-84100596 None:intergenic 55.0%
TCATCTCGTGTCTTTGGGCG+GGG + chr7_3:84100577-84100596 Msa1131530:CDS 55.0%
!!! TTTTTTTTTGGGGGGGGGGG+GGG + chr7_3:84100883-84100902 Msa1131530:intron 55.0%
CTTTGCCGAAACTGCATGGG+CGG + chr7_3:84101698-84101717 Msa1131530:CDS 55.0%
TTTGCCGAAACTGCATGGGC+GGG + chr7_3:84101699-84101718 Msa1131530:CDS 55.0%
TGTGAGAACCAGCACACGGA+AGG + chr7_3:84102029-84102048 Msa1131530:CDS 55.0%
GGTGGGGGCTCCAGAATTTA+AGG + chr7_3:84102210-84102229 Msa1131530:CDS 55.0%
TCACTGCAGTACCCTTGGTC+AGG + chr7_3:84102762-84102781 Msa1131530:intron 55.0%
CACTGCAGTACCCTTGGTCA+GGG + chr7_3:84102763-84102782 Msa1131530:intron 55.0%
ACTGCAGTACCCTTGGTCAG+GGG + chr7_3:84102764-84102783 Msa1131530:intron 55.0%
! TGCCAATCAGAAGCGCGAAG+AGG - chr7_3:84102855-84102874 None:intergenic 55.0%
TCAGTCCCTTACCCTTAGGC+TGG + chr7_3:84103421-84103440 Msa1131530:CDS 55.0%
! AGCTTAGAGAGCGTGTGAGG+CGG + chr7_3:84103507-84103526 Msa1131530:CDS 55.0%
!! GTGTTACCACAGATGGTGGG+AGG + chr7_3:84104303-84104322 Msa1131530:CDS 55.0%
! GGAGCTTTTAACATGGGCCC+TGG + chr7_3:84104376-84104395 Msa1131530:CDS 55.0%
! AGAACCAGATCTGGGGTCCA+GGG - chr7_3:84104396-84104415 None:intergenic 55.0%
! TAGAACCAGATCTGGGGTCC+AGG - chr7_3:84104397-84104416 None:intergenic 55.0%
TAATAAGGCGGCACCAAGGC+TGG - chr7_3:84104696-84104715 None:intergenic 55.0%
AGGCTAATAAGGCGGCACCA+AGG - chr7_3:84104700-84104719 None:intergenic 55.0%
GTCGATTGCGGTGTACACCA+CGG - chr7_3:84104745-84104764 None:intergenic 55.0%
!! ATCGACTCGCAAAGACTGCC+AGG + chr7_3:84104759-84104778 Msa1131530:CDS 55.0%
! TCGACTCGCAAAGACTGCCA+GGG + chr7_3:84104760-84104779 Msa1131530:CDS 55.0%
GCTGTAAAGTCAGGCTCAGG+GGG - chr7_3:84104806-84104825 None:intergenic 55.0%
TGAATAGCGACGGTGGACGG+CGG - chr7_3:84098929-84098948 None:intergenic 60.0%
!!! TTTTTTTTGGGGGGGGGGGG+GGG + chr7_3:84100884-84100903 Msa1131530:intron 60.0%
!! GGGGGGGTTAGTTGGTAGGA+GGG + chr7_3:84100900-84100919 Msa1131530:intron 60.0%
AGCTCCCGCCCATGCAGTTT+CGG - chr7_3:84101706-84101725 None:intergenic 60.0%
GTCCCTTACCCTTAGGCTGG+AGG + chr7_3:84103424-84103443 Msa1131530:CDS 60.0%
!! ACCACAGATGGTGGGAGGAG+TGG + chr7_3:84104308-84104327 Msa1131530:CDS 60.0%
ACCACTCCTCCCACCATCTG+TGG - chr7_3:84104312-84104331 None:intergenic 60.0%
CGCCTTCACAGTCCGAGTAG+AGG - chr7_3:84104429-84104448 None:intergenic 60.0%
AACGGCAGTTCCTCCAGCCT+TGG + chr7_3:84104680-84104699 Msa1131530:CDS 60.0%
AGTGCGCGCGGCAAACTTTG+AGG - chr7_3:84104720-84104739 None:intergenic 60.0%
CGCAAAGACTGCCAGGGAGT+TGG + chr7_3:84104766-84104785 Msa1131530:CDS 60.0%
!! GGGGGGGGTTAGTTGGTAGG+AGG + chr7_3:84100899-84100918 Msa1131530:intron 65.0%
GGAGGCTGAGTTCTGTGGGG+AGG + chr7_3:84104355-84104374 Msa1131530:CDS 65.0%
TAAGGCGGCACCAAGGCTGG+AGG - chr7_3:84104693-84104712 None:intergenic 65.0%
! TACACCACGGAGAGTGCGCG+CGG - chr7_3:84104732-84104751 None:intergenic 65.0%
!! GGGGGGGGGGGTTAGTTGGT+AGG + chr7_3:84100896-84100915 Msa1131530:intron 70.0%
TGGGCCCTGGACCCCAGATC+TGG + chr7_3:84104389-84104408 Msa1131530:CDS 70.0%
TTTGCCGCGCGCACTCTCCG+TGG + chr7_3:84104725-84104744 Msa1131530:CDS 70.0%
!! GGGGGGGGGGGGGGGTTAGT+TGG + chr7_3:84100892-84100911 Msa1131530:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 84098691 84105100 84098691 ID=Msa1131530;Name=Msa1131530
chr7_3 mRNA 84098691 84105100 84098691 ID=Msa1131530-mRNA-1;Parent=Msa1131530;Name=Msa1131530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=202|1|1|1|1|0.87|8|259|731
chr7_3 exon 84098691 84098863 84098691 ID=Msa1131530-mRNA-1:exon:25025;Parent=Msa1131530-mRNA-1
chr7_3 exon 84099767 84099857 84099767 ID=Msa1131530-mRNA-1:exon:25026;Parent=Msa1131530-mRNA-1
chr7_3 exon 84100108 84100690 84100108 ID=Msa1131530-mRNA-1:exon:25027;Parent=Msa1131530-mRNA-1
chr7_3 exon 84101549 84101761 84101549 ID=Msa1131530-mRNA-1:exon:25028;Parent=Msa1131530-mRNA-1
chr7_3 exon 84101930 84102231 84101930 ID=Msa1131530-mRNA-1:exon:25029;Parent=Msa1131530-mRNA-1
chr7_3 exon 84102771 84102882 84102771 ID=Msa1131530-mRNA-1:exon:25030;Parent=Msa1131530-mRNA-1
chr7_3 exon 84103413 84103649 84103413 ID=Msa1131530-mRNA-1:exon:25031;Parent=Msa1131530-mRNA-1
chr7_3 exon 84104155 84105100 84104155 ID=Msa1131530-mRNA-1:exon:25032;Parent=Msa1131530-mRNA-1
chr7_3 five_prime_UTR 84098691 84098863 84098691 ID=Msa1131530-mRNA-1:five_prime_utr;Parent=Msa1131530-mRNA-1
chr7_3 five_prime_UTR 84099767 84099795 84099767 ID=Msa1131530-mRNA-1:five_prime_utr;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84099796 84099857 84099796 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84100108 84100690 84100108 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84101549 84101761 84101549 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84101930 84102231 84101930 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84102771 84102882 84102771 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84103413 84103649 84103413 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 CDS 84104155 84104841 84104155 ID=Msa1131530-mRNA-1:cds;Parent=Msa1131530-mRNA-1
chr7_3 three_prime_UTR 84104842 84105100 84104842 ID=Msa1131530-mRNA-1:three_prime_utr;Parent=Msa1131530-mRNA-1
Gene Sequence

>Msa1131530

ATGTTTGACCGAAGTGATTACAAATCACAGTACATGGATGGCCAGCGAGAAAGTTCTTTTAGGTGGGATTTCTTGGATTCTAAACTATCTTCATCTTCTGATGTCAGAGTTACAAAATCTGGATTCAGTATTGATAAATTAAACCATGGTAGTCATGGAAGCAGCACAACCTCTAGGTCTTTTAAAAAAGGAATGAGAAAGGGATCTGAAGGACTGAAATTAATTGGTCGATCACTTGGACTGGGGGTATCTAAGGCAGTGTTTCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCCCAAGACAAATTTTTACTCTTATGGAATAAATTATTTGTTATCTCATGCATTTTTTCCGTGTTTGTGGATCCACTGTTTTTTTATCTTCCTGTCATCAATGATGAATTACACTGTCTGGGTATAGACCGAAAGTTGGCAATAATAGTCACCACCTTGAGGACAGCCATTGATGCTTTCTATTTGCTAAACATGGCTCTCCAATTTCGCACGGCTTACATTGCTCCATCATCTCGTGTCTTTGGGCGGGGCGAGCTTGTGATAGATTCGGCACAGATAGCCAAGCGATACTTGCGACGATATTTCATCGTTGATTTCCTATCTGTGTTGCCAGTACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCTGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATATTCCTAGATTTCTTCGAATGGTACCATTAACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCCGAAACTGCATGGGCGGGAGCTGTATATTATTTGCTGTTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAATGCTTGCCGTGACAATGGGTGCAACAAAAACTACTTGTATTGTGAGAACCAGCACACGGAAGGTTATAGTGCCTGGCAAAACAAAAGCAAAGCTATTTTTAAATCAAAGTGCTCTGTAGATGATGATCCTCCACCTTTTGATTATGGAATTTTTAAGCAAGCCTTGTCATCTGGTATCATTTCATCTAAGAAATTCATCACAAAATATCTTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACCCTTGGTCAGGGGCTTCAAACTAGCACATATCCTGGGGAGGTTATCTTTTCAATAGCACTTGCCATATCAGGTCTCATCCTCTTCGCGCTTCTGATTGGCAACATGCAGACATATCTTCAGTCCCTTACCCTTAGGCTGGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAATGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGGCGGTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGACGAAGATATTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACTTATATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGCGGGCGTCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGTTTTTTCAACCGCACATATCTAAAGGAGGCTGAGTTCTGTGGGGAGGAGCTTTTAACATGGGCCCTGGACCCCAGATCTGGTTCTAATCTTCCAACCTCTACTCGGACTGTGAAGGCGTTAACAGAGGTTGAGACTTTTGCCTTAACCGCCGATGAGCTGAAATTTGTTGCCAGTCAGTTTAGACGTCTTCACAGTAGACAGGTTCAACACACTTTTCGTTTTTACTCTCAACAATGGAGAACCTGGGCTGCTTGTTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAAATTATGAAGCTTCGTCAGAAGGAAGAAGCGGATGAGTCAGAAGGAAGTCACGGCAACGGCAGTTCCTCCAGCCTTGGTGCCGCCTTATTAGCCTCAAAGTTTGCCGCGCGCACTCTCCGTGGTGTACACCGCAATCGACTCGCAAAGACTGCCAGGGAGTTGGTGAAATTACAAAAACCCCCTGAGCCTGACTTTACAGCAGATGATGCAGACTGA
Protein sequence

>Msa1131530

MFDRSDYKSQYMDGQRESSFRWDFLDSKLSSSSDVRVTKSGFSIDKLNHGSHGSSTTSRSFKKGMRKGSEGLKLIGRSLGLGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCIFSVFVDPLFFYLPVINDELHCLGIDRKLAIIVTTLRTAIDAFYLLNMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIVDFLSVLPVPQIVVWRFLQRSKSSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAVYYLLLYMLASHIVGAFWYLLAIERNDSCWQNACRDNGCNKNYLYCENQHTEGYSAWQNKSKAIFKSKCSVDDDPPPFDYGIFKQALSSGIISSKKFITKYLYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAISGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEDILVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTYLKEAEFCGEELLTWALDPRSGSNLPTSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEADESEGSHGNGSSSSLGAALLASKFAARTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD*