AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854320 MtrunA17_Chr5g0431541 55.000 160 45 7 6 149 35 183 5.21e-40 137
Msa0854320 MtrunA17_Chr5g0431561 55.000 160 45 7 6 149 35 183 8.87e-40 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 563 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTAGATGGTGCTTC+AGG 0.276592 5_4:+46757023 None:intergenic
TTTCTCTTGGAACTTGTCAT+TGG 0.287091 5_4:+46747809 None:intergenic
GACAAAATGAACGGTTCGTC+TGG 0.292903 5_4:+46747992 None:intergenic
ATCCAGCAATTTCTTTCTCT+TGG 0.306897 5_4:+46747796 None:intergenic
ATCATCTTGGAATGAGGCTT+TGG 0.335865 5_4:+46748776 None:intergenic
TCCAAGAGTTCGTCTTCTTC+AGG 0.347334 5_4:+46748973 None:intergenic
AAATTCTTCTTCATTGTAGA+TGG 0.349475 5_4:+46757014 None:intergenic
ATGTTTATCAACTTGTTTAG+TGG 0.353117 5_4:+46749042 None:intergenic
CGTAGAGACCTAACGGATCT+TGG 0.360673 5_4:-46747860 Msa0854320:CDS
CAATGATGATCTTGGGGATC+AGG 0.361378 5_4:-46747834 Msa0854320:CDS
AGCTGATATTGCTCTGATAA+TGG 0.368195 5_4:+46747914 None:intergenic
TCCAATGAATTTCTCTTCCA+TGG 0.377408 5_4:+46747718 None:intergenic
TTCATCTTAGAAGATACTTC+AGG 0.379776 5_4:+46749006 None:intergenic
AAAATAGAGCGTCATTAGTT+AGG 0.384452 5_4:+46747891 None:intergenic
TTGGGTCCAATGATGATCTT+GGG 0.396192 5_4:-46747841 Msa0854320:CDS
CTTGGGTCCAATGATGATCT+TGG 0.403380 5_4:-46747842 Msa0854320:CDS
AAACAAGTTGATAAACATAA+TGG 0.431840 5_4:-46749037 Msa0854320:CDS
TCATCTTGGAATGAGGCTTT+GGG 0.433347 5_4:+46748777 None:intergenic
AAGAAGCTCAAGACGAATGA+TGG 0.443037 5_4:-46748837 Msa0854320:CDS
CTGATCCCCAAGATCATCAT+TGG 0.448577 5_4:+46747835 None:intergenic
TCCATGGAAGAGAAATTCAT+TGG 0.449160 5_4:-46747719 Msa0854320:CDS
CATACCAAGGATCATCATCT+TGG 0.457191 5_4:+46748763 None:intergenic
TTCCAAGAGAAAGAAATTGC+TGG 0.464484 5_4:-46747798 Msa0854320:CDS
GTAGAGACCTAACGGATCTT+GGG 0.467555 5_4:-46747859 Msa0854320:CDS
ACCTGAAGAAGACGAACTCT+TGG 0.468055 5_4:-46748974 Msa0854320:CDS
GAAACAAGGAAATCACCAAT+TGG 0.476741 5_4:-46748801 Msa0854320:CDS
GGCTGAGATTGAGATGGAAC+TGG 0.480892 5_4:-46747759 Msa0854320:CDS
TTACTTCACGAGGAGGGGTA+TGG 0.489006 5_4:+46747939 None:intergenic
TTTGGTTTAATTTGTAACAA+GGG 0.505192 5_4:-46747622 Msa0854320:three_prime_UTR
GGCTTACAATACGCTGGTAT+CGG 0.511622 5_4:+46748687 None:intergenic
ATTTGGTTTAATTTGTAACA+AGG 0.516990 5_4:-46747623 Msa0854320:three_prime_UTR
AATGAGGCTTTGGGTCCAAT+TGG 0.517814 5_4:+46748786 None:intergenic
GCATGGGTTAACACACTAGT+TGG 0.520365 5_4:+46747599 None:intergenic
ACAAAATGAACGGTTCGTCT+GGG 0.522179 5_4:+46747993 None:intergenic
CATTCCAAGATGATGATCCT+TGG 0.525410 5_4:-46748767 Msa0854320:CDS
CAAAGAGGCTGAGATTGAGA+TGG 0.547806 5_4:-46747765 Msa0854320:CDS
CTCTGATCAGTACAAATCCA+TGG 0.550418 5_4:-46747735 Msa0854320:CDS
AATGATGATCTTGGGGATCA+GGG 0.551843 5_4:-46747833 Msa0854320:CDS
AACGGTTCGTCTGGGGATTG+CGG 0.551971 5_4:+46748001 None:intergenic
ACCTTCTCGTAGAGACCTAA+CGG 0.553646 5_4:-46747867 Msa0854320:CDS
CATTGGAGAGCCCGCTGCGA+GGG 0.553865 5_4:-46747702 Msa0854320:CDS
GACATGTCATGTGCAATGCA+TGG 0.556386 5_4:+46747582 None:intergenic
CATTGGACCCAAGATCCGTT+AGG 0.566567 5_4:+46747852 None:intergenic
TCACGAGGAGGGGTATGGAA+TGG 0.577017 5_4:+46747944 None:intergenic
AGGATCATCATCTTGGAATG+AGG 0.580014 5_4:+46748770 None:intergenic
ACACTTCATACCCTCGCAGC+GGG 0.580469 5_4:+46747692 None:intergenic
ATGGAGTTACTTCACGAGGA+GGG 0.588311 5_4:+46747933 None:intergenic
ACATGACATGTCTAAAATGA+AGG 0.595277 5_4:-46747571 Msa0854320:three_prime_UTR
TCCGTTAGGTCTCTACGAGA+AGG 0.607177 5_4:+46747866 None:intergenic
CAAAATGAACGGTTCGTCTG+GGG 0.615871 5_4:+46747994 None:intergenic
ACATGTCATGTGCAATGCAT+GGG 0.619203 5_4:+46747583 None:intergenic
AAGACGAATGATGGAAACAA+AGG 0.620482 5_4:-46748828 Msa0854320:CDS
TGTAGAACACAGTACCTGAT+CGG 0.628314 5_4:+46748291 None:intergenic
TCTGAACCTGACAAAATGAA+CGG 0.634772 5_4:+46747983 None:intergenic
AACAACGAATATCCTATGCA+CGG 0.639377 5_4:-46747534 Msa0854320:three_prime_UTR
TGGAGTTACTTCACGAGGAG+GGG 0.645146 5_4:+46747934 None:intergenic
TCATTGGAGAGCCCGCTGCG+AGG 0.652817 5_4:-46747703 Msa0854320:CDS
CAGGTTGGCTTACAATACGC+TGG 0.654860 5_4:+46748681 None:intergenic
TGGGTCCAATGATGATCTTG+GGG 0.657170 5_4:-46747840 Msa0854320:CDS
AATGGAGTTACTTCACGAGG+AGG 0.678046 5_4:+46747932 None:intergenic
GAAACAAAGGAATTGAAACA+AGG 0.685523 5_4:-46748815 Msa0854320:CDS
AACACTTCATACCCTCGCAG+CGG 0.686182 5_4:+46747691 None:intergenic
TCATGATCATGATCATACCA+AGG 0.686968 5_4:+46748750 None:intergenic
GATAATGGAGTTACTTCACG+AGG 0.731198 5_4:+46747929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTAAATTTTAAATT+TGG - chr5_4:46748860-46748879 Msa0854320:CDS 0.0%
!!! TTTATTTTAAATTTTAAATT+TGG - chr5_4:46748860-46748879 Msa0854320:CDS 0.0%
!!! TCAATTTTTTAAGTTAAAAA+TGG - chr5_4:46749370-46749389 Msa0854320:intron 10.0%
!!! TAAGATTTTTTTTAGAAATT+GGG + chr5_4:46754462-46754481 None:intergenic 10.0%
!!! ATAAGATTTTTTTTAGAAAT+TGG + chr5_4:46754463-46754482 None:intergenic 10.0%
!!! ATTTTTTTTCACATAATTAA+GGG + chr5_4:46755043-46755062 None:intergenic 10.0%
!!! AATTTTTTTTCACATAATTA+AGG + chr5_4:46755044-46755063 None:intergenic 10.0%
!! TATATATACATCAAATATTG+AGG + chr5_4:46747844-46747863 None:intergenic 15.0%
!!! TGTTTTCAATTTTATTGATA+TGG - chr5_4:46748985-46749004 Msa0854320:CDS 15.0%
!!! ACAAAACATATCAATTATTT+TGG + chr5_4:46749711-46749730 None:intergenic 15.0%
!! ATTTAATATACAATGCAATA+TGG - chr5_4:46750680-46750699 Msa0854320:intron 15.0%
!! AAAATGAAAACATAATAAGA+AGG - chr5_4:46751245-46751264 Msa0854320:intron 15.0%
!! GCAAAATAAAAAAATAAAAC+AGG - chr5_4:46751677-46751696 Msa0854320:intron 15.0%
!! TATTATACTTCAAGTATAAA+CGG + chr5_4:46751890-46751909 None:intergenic 15.0%
!!! CACTAAAAGTTATTTAAAAT+TGG + chr5_4:46751965-46751984 None:intergenic 15.0%
!! TATAAATACTCAATATTTGA+AGG - chr5_4:46752148-46752167 Msa0854320:intron 15.0%
!! ATAAATACTCAATATTTGAA+GGG - chr5_4:46752149-46752168 Msa0854320:intron 15.0%
!!! TTTTTTCAAGTTTGAATAAA+CGG + chr5_4:46752428-46752447 None:intergenic 15.0%
!! TATAATATTAATTACGTCAT+AGG - chr5_4:46752567-46752586 Msa0854320:intron 15.0%
!! AAGAAATAAATATTCAATTC+TGG - chr5_4:46753683-46753702 Msa0854320:intron 15.0%
!!! ACAATTTATTTAAAATTACG+CGG - chr5_4:46754665-46754684 Msa0854320:intron 15.0%
!! TAATTTACTTTCCTAAAAGA+TGG + chr5_4:46748034-46748053 None:intergenic 20.0%
!!! TAGCATTATTTTATTAGCTT+AGG - chr5_4:46748058-46748077 Msa0854320:intron 20.0%
!! ATAATGACTCAAAGTTAAAA+GGG + chr5_4:46748274-46748293 None:intergenic 20.0%
!! AATAATGACTCAAAGTTAAA+AGG + chr5_4:46748275-46748294 None:intergenic 20.0%
!!! ATTTGGTTTAATTTGTAACA+AGG - chr5_4:46748877-46748896 Msa0854320:intron 20.0%
!!! TTTGGTTTAATTTGTAACAA+GGG - chr5_4:46748878-46748897 Msa0854320:intron 20.0%
!! TAAGTCATGTTTAAGTATAA+AGG - chr5_4:46749106-46749125 Msa0854320:intron 20.0%
!!! AACTTGTTTTTGTTTTGTTT+TGG - chr5_4:46750163-46750182 Msa0854320:intron 20.0%
!!! TCCTTTAGAAATGTAATATT+TGG - chr5_4:46750290-46750309 Msa0854320:intron 20.0%
!! TCCAAATATTACATTTCTAA+AGG + chr5_4:46750294-46750313 None:intergenic 20.0%
!! ACTTTCAAATATATATTTCC+AGG - chr5_4:46750530-46750549 Msa0854320:intron 20.0%
!!! TTTATTTTGCTAAGATCATT+TGG + chr5_4:46751667-46751686 None:intergenic 20.0%
!!! TATTTGTTTTGTGTATCATT+CGG + chr5_4:46751817-46751836 None:intergenic 20.0%
!! CACAAAACAAATATGAATTA+TGG - chr5_4:46751824-46751843 Msa0854320:intron 20.0%
!! CAATAAAAATAGAGGAAAAA+AGG + chr5_4:46751991-46752010 None:intergenic 20.0%
!!! CTTTTTTCCTCTATTTTTAT+TGG - chr5_4:46751989-46752008 Msa0854320:intron 20.0%
!! TTATTGTCCAATAAAAATAG+AGG + chr5_4:46751999-46752018 None:intergenic 20.0%
!! TCACAAAAATTGTTTAAAAG+TGG - chr5_4:46752091-46752110 Msa0854320:intron 20.0%
!!! AAGTCTAGCTTTTATAATAA+AGG + chr5_4:46752286-46752305 None:intergenic 20.0%
!!! TTTTGATTACAATTAGTGTA+GGG + chr5_4:46752514-46752533 None:intergenic 20.0%
!!! TTTTTGATTACAATTAGTGT+AGG + chr5_4:46752515-46752534 None:intergenic 20.0%
!!! TTTTTGAAAAAAAGTGCTTA+TGG + chr5_4:46753459-46753478 None:intergenic 20.0%
!! GACATAAATTTCATATGATT+TGG + chr5_4:46753830-46753849 None:intergenic 20.0%
!! AAATTTATGTCTAAACTGAA+GGG - chr5_4:46753839-46753858 Msa0854320:intron 20.0%
!!! TTGAATTATTATTGCAGTTT+TGG + chr5_4:46753880-46753899 None:intergenic 20.0%
!!! AGAACGAAAATAATTTTCAA+AGG + chr5_4:46754629-46754648 None:intergenic 20.0%
!!! CAATTTATTTAAAATTACGC+GGG - chr5_4:46754666-46754685 Msa0854320:intron 20.0%
!!! AAACAAGTTGATAAACATAA+TGG - chr5_4:46755494-46755513 Msa0854320:intron 20.0%
!! TAATTTACTTTCCTAAAAGA+TGG + chr5_4:46748034-46748053 None:intergenic 20.0%
!!! ATTTGGTTTAATTTGTAACA+AGG - chr5_4:46748877-46748896 Msa0854320:intron 20.0%
!!! TTTGGTTTAATTTGTAACAA+GGG - chr5_4:46748878-46748897 Msa0854320:intron 20.0%
! AAATTCTTCTTCATTGTAGA+TGG + chr5_4:46747520-46747539 None:intergenic 25.0%
!!! TATTTTATTAGCTTAGGTCA+TGG - chr5_4:46748064-46748083 Msa0854320:intron 25.0%
! TACCTGATTGTCAAAATATT+TGG + chr5_4:46748232-46748251 None:intergenic 25.0%
! TTCAATCAATTTCTTTCTCT+TGG + chr5_4:46748713-46748732 None:intergenic 25.0%
!! TTCAAAGATTTTATCTTCCA+TGG + chr5_4:46748785-46748804 None:intergenic 25.0%
! TTTAATGTCAACACAATAGT+TGG + chr5_4:46748904-46748923 None:intergenic 25.0%
! AGATGTTTAAATGCTCTTAT+GGG - chr5_4:46749181-46749200 Msa0854320:intron 25.0%
! ATAACATTGGAAAAAGCTAA+AGG - chr5_4:46749273-46749292 Msa0854320:intron 25.0%
!!! TAGTAATTTTTGGATCGAAT+TGG + chr5_4:46749335-46749354 None:intergenic 25.0%
!!! AATGCCACTTTAGTAATTTT+TGG + chr5_4:46749345-46749364 None:intergenic 25.0%
! AAAAATTACTAAAGTGGCAT+TGG - chr5_4:46749344-46749363 Msa0854320:intron 25.0%
! TGCAACTAACAATATGAAAT+AGG + chr5_4:46749575-46749594 None:intergenic 25.0%
! TTTGTAGCATCAAACTAAAA+TGG - chr5_4:46749624-46749643 Msa0854320:intron 25.0%
!!! ACCTCATTTCTTTTGAAAAA+TGG - chr5_4:46749889-46749908 Msa0854320:intron 25.0%
!!! ACCATTTTTCAAAAGAAATG+AGG + chr5_4:46749893-46749912 None:intergenic 25.0%
! ATGAAAATCATACATGATTG+AGG + chr5_4:46749922-46749941 None:intergenic 25.0%
!!! TTCAAGTTTGTTATAATCTG+TGG - chr5_4:46749992-46750011 Msa0854320:intron 25.0%
! AAAACTAATGACTCTTTCAA+TGG - chr5_4:46750050-46750069 Msa0854320:intron 25.0%
!!! TACATGTTATTTTCTGCTTT+CGG - chr5_4:46750139-46750158 Msa0854320:intron 25.0%
! TAAACCATTATCACGTTATA+TGG + chr5_4:46750244-46750263 None:intergenic 25.0%
! AGAAATGTAATATTTGGACT+TGG - chr5_4:46750296-46750315 Msa0854320:intron 25.0%
!!! CTTTCTGTTTGTTGTTATAA+TGG - chr5_4:46750754-46750773 Msa0854320:intron 25.0%
!!! TTTGTTGTTATAATGGTTGA+AGG - chr5_4:46750761-46750780 Msa0854320:intron 25.0%
!! TTAATTGATAGTTAGTACCA+GGG - chr5_4:46750916-46750935 Msa0854320:intron 25.0%
!!! TGTCTCTTTACTAGTTTTAT+TGG - chr5_4:46751011-46751030 Msa0854320:intron 25.0%
!!! GTCTCTTTACTAGTTTTATT+GGG - chr5_4:46751012-46751031 Msa0854320:intron 25.0%
!!! TTACTAGTTTTATTGGGTTT+TGG - chr5_4:46751018-46751037 Msa0854320:intron 25.0%
!!! GAAACATATGGTTTTTTCTA+TGG - chr5_4:46751052-46751071 Msa0854320:intron 25.0%
! GTTTATACATGTTATATCCA+TGG - chr5_4:46751074-46751093 Msa0854320:intron 25.0%
!!! TAGTTTTTCAAATTTGTTGC+AGG - chr5_4:46751109-46751128 Msa0854320:intron 25.0%
! TTCAAAAGTAAAAATCCTTG+TGG - chr5_4:46751135-46751154 Msa0854320:intron 25.0%
! ATAAGAAGGAACAAAATTAG+TGG - chr5_4:46751259-46751278 Msa0854320:intron 25.0%
! TAAGAAGGAACAAAATTAGT+GGG - chr5_4:46751260-46751279 Msa0854320:intron 25.0%
! TTCCAAATATGTTACATCTA+TGG + chr5_4:46751287-46751306 None:intergenic 25.0%
! ACTAAAACTCTTTAGTAACA+AGG - chr5_4:46751437-46751456 Msa0854320:intron 25.0%
! CTAAAACTCTTTAGTAACAA+GGG - chr5_4:46751438-46751457 Msa0854320:intron 25.0%
!! CTAACTTGCAAAGAAAATTT+GGG + chr5_4:46751579-46751598 None:intergenic 25.0%
!! TCTAACTTGCAAAGAAAATT+TGG + chr5_4:46751580-46751599 None:intergenic 25.0%
! AAAAATAAAACAGGAACAAG+TGG - chr5_4:46751686-46751705 Msa0854320:intron 25.0%
!!! TATGTATTGGCTTTTTCTTT+AGG + chr5_4:46751759-46751778 None:intergenic 25.0%
!!! CAATTAATACATGTTTTGGA+GGG + chr5_4:46752368-46752387 None:intergenic 25.0%
! TTTGATTACAATTAGTGTAG+GGG + chr5_4:46752513-46752532 None:intergenic 25.0%
! TATTGAAAATCGCAAAGAAA+TGG + chr5_4:46753031-46753050 None:intergenic 25.0%
! GTTTATGCTAGTATAAATGT+TGG + chr5_4:46753151-46753170 None:intergenic 25.0%
! TATGAATGGTACATTTGAAA+CGG + chr5_4:46753260-46753279 None:intergenic 25.0%
! TTTCAAATGTACCATTCATA+AGG - chr5_4:46753260-46753279 Msa0854320:intron 25.0%
! ATCACACATTAGCAATTTAA+TGG - chr5_4:46753330-46753349 Msa0854320:intron 25.0%
! GAAATTTATGTCTAAACTGA+AGG - chr5_4:46753838-46753857 Msa0854320:intron 25.0%
! TCAAACAATCTGAATTGAAT+AGG - chr5_4:46754182-46754201 Msa0854320:intron 25.0%
! AGAGGAAGAAAAAAAATGAA+GGG - chr5_4:46754383-46754402 Msa0854320:intron 25.0%
!! ATGAAGGGAAAAAATGTTTT+TGG - chr5_4:46754398-46754417 Msa0854320:intron 25.0%
! ATTAAGTGGTTATGAATTAG+CGG + chr5_4:46754534-46754553 None:intergenic 25.0%
! ATAAACGATGATAAAACGAA+AGG + chr5_4:46754709-46754728 None:intergenic 25.0%
!!! CTTACTTTTAGGTTTATCTT+TGG + chr5_4:46754972-46754991 None:intergenic 25.0%
!!! AGTACTATCTACTTACTTTT+AGG + chr5_4:46754983-46755002 None:intergenic 25.0%
!! TTTTTCACATAATTAAGGGT+TGG + chr5_4:46755039-46755058 None:intergenic 25.0%
!!! AACTTGTTTAGTGGTTTTTT+AGG + chr5_4:46755483-46755502 None:intergenic 25.0%
!! ATGTTTATCAACTTGTTTAG+TGG + chr5_4:46755492-46755511 None:intergenic 25.0%
! TATATACACATCAAATACTG+AGG + chr5_4:46755883-46755902 None:intergenic 25.0%
!!! TAGCATTCTTTTATTAGCTT+AGG - chr5_4:46756079-46756098 Msa0854320:intron 25.0%
! ATGATGACTCAAAGTTAAAA+GGG + chr5_4:46756273-46756292 None:intergenic 25.0%
TAAGTGTATTGCAGAACAAT+TGG - chr5_4:46747579-46747598 Msa0854320:three_prime_UTR 30.0%
AAGTGTATTGCAGAACAATT+GGG - chr5_4:46747580-46747599 Msa0854320:three_prime_UTR 30.0%
TCTATATGAAGCACAGAAAA+AGG + chr5_4:46747634-46747653 None:intergenic 30.0%
TAAGTGTATTGCAGAACAAT+TGG - chr5_4:46747579-46747598 Msa0854320:three_prime_UTR 30.0%
AAGTGTATTGCAGAACAATT+GGG - chr5_4:46747580-46747599 Msa0854320:three_prime_UTR 30.0%
!!! TGCCAAATATTTTGACAATC+AGG - chr5_4:46748227-46748246 Msa0854320:intron 30.0%
AATGGGAAAGAACTGTAAAA+GGG + chr5_4:46748465-46748484 None:intergenic 30.0%
ACAAAAGATAGAGCAAATGT+TGG + chr5_4:46748490-46748509 None:intergenic 30.0%
GAGATGTTTAAATGCTCTTA+TGG - chr5_4:46749180-46749199 Msa0854320:intron 30.0%
TTATGGGTCTCAAATTAAGA+AGG - chr5_4:46749197-46749216 Msa0854320:intron 30.0%
!! AGCTTTTTCCAATGTTATGT+AGG + chr5_4:46749271-46749290 None:intergenic 30.0%
CGATCCAAAAATTACTAAAG+TGG - chr5_4:46749338-46749357 Msa0854320:intron 30.0%
TGGCATGAAAAAGTAAAATC+CGG - chr5_4:46749390-46749409 Msa0854320:intron 30.0%
GATAGAACCAGATAAAAATC+AGG + chr5_4:46749464-46749483 None:intergenic 30.0%
!!! TTTTTATCTGGTTCTATCAC+AGG - chr5_4:46749466-46749485 Msa0854320:intron 30.0%
TTCGGAAAAAGAAAAGATCT+CGG + chr5_4:46749652-46749671 None:intergenic 30.0%
CACTTAGACATAAATAGTGA+TGG - chr5_4:46749789-46749808 Msa0854320:intron 30.0%
! GGTCTTCATTACTATGATTT+TGG + chr5_4:46749872-46749891 None:intergenic 30.0%
TTCATTTGATGTTCATGCTA+TGG - chr5_4:46749937-46749956 Msa0854320:intron 30.0%
GAATAGGAAAGAAAGATAAG+AGG - chr5_4:46750116-46750135 Msa0854320:intron 30.0%
GAATCCATATAACGTGATAA+TGG - chr5_4:46750237-46750256 Msa0854320:intron 30.0%
GAATTCTACTCCTGTATAAA+TGG - chr5_4:46750362-46750381 Msa0854320:intron 30.0%
TGCTTGCTTCATATGTATTA+TGG - chr5_4:46750656-46750675 Msa0854320:intron 30.0%
ATATGGAATTGAATAGTCTG+AGG - chr5_4:46750697-46750716 Msa0854320:intron 30.0%
ATAATGGTTGAAGGATTCTT+AGG - chr5_4:46750770-46750789 Msa0854320:intron 30.0%
AACCTCAAACAAACATACAA+TGG + chr5_4:46750846-46750865 None:intergenic 30.0%
GGTACTAACTATCAATTAAC+AGG + chr5_4:46750915-46750934 None:intergenic 30.0%
! GTTAATTGATAGTTAGTACC+AGG - chr5_4:46750915-46750934 Msa0854320:intron 30.0%
GCTTAATAAGCTGAAACATA+TGG - chr5_4:46751040-46751059 Msa0854320:intron 30.0%
AACTATAAAATTCAGCTCCA+TGG + chr5_4:46751094-46751113 None:intergenic 30.0%
AAGAAGGAACAAAATTAGTG+GGG - chr5_4:46751261-46751280 Msa0854320:intron 30.0%
!! TCTTTCTTTTGAAGAAGTCA+TGG + chr5_4:46751724-46751743 None:intergenic 30.0%
!!! ATTGGCTTTTTCTTTAGGTA+TGG + chr5_4:46751754-46751773 None:intergenic 30.0%
TTGAATCGCAAACTATGTAT+TGG + chr5_4:46751772-46751791 None:intergenic 30.0%
TAATATCTGTTTACGTGATG+AGG - chr5_4:46751923-46751942 Msa0854320:intron 30.0%
TCATAATTGTTAGTAGAGCT+AGG + chr5_4:46752184-46752203 None:intergenic 30.0%
! TAAGAAGATTGTGAGGTTTT+GGG + chr5_4:46752237-46752256 None:intergenic 30.0%
! ATAAGAAGATTGTGAGGTTT+TGG + chr5_4:46752238-46752257 None:intergenic 30.0%
AAGAAGATAAGAAGATTGTG+AGG + chr5_4:46752244-46752263 None:intergenic 30.0%
! TTATAAAAGCTAGACTTGCT+TGG - chr5_4:46752289-46752308 Msa0854320:intron 30.0%
!! GCAATTAATACATGTTTTGG+AGG + chr5_4:46752369-46752388 None:intergenic 30.0%
! CGAGCAATTAATACATGTTT+TGG + chr5_4:46752372-46752391 None:intergenic 30.0%
GTATTAAAGCCTAATCAAGT+CGG - chr5_4:46752479-46752498 Msa0854320:intron 30.0%
AGTGTCATATACTTAGTGTA+GGG + chr5_4:46752548-46752567 None:intergenic 30.0%
TAGTGTCATATACTTAGTGT+AGG + chr5_4:46752549-46752568 None:intergenic 30.0%
ATGCTAGTATAAATGTTGGA+GGG + chr5_4:46753147-46753166 None:intergenic 30.0%
TATGCTAGTATAAATGTTGG+AGG + chr5_4:46753148-46753167 None:intergenic 30.0%
TGGTATAATTTACTACCCAA+AGG - chr5_4:46753350-46753369 Msa0854320:intron 30.0%
TATAATTTACTACCCAAAGG+TGG - chr5_4:46753353-46753372 Msa0854320:intron 30.0%
ATAATTTACTACCCAAAGGT+GGG - chr5_4:46753354-46753373 Msa0854320:intron 30.0%
ATAGCTTATTGTTCTGCTTT+CGG - chr5_4:46753489-46753508 Msa0854320:intron 30.0%
ATTCTGTGAAATTGAAGCAA+TGG + chr5_4:46753560-46753579 None:intergenic 30.0%
ATTGAAGTTTGAGTCGAAAT+TGG + chr5_4:46753641-46753660 None:intergenic 30.0%
TGATAGACTTAGTAAGAGTT+TGG + chr5_4:46753664-46753683 None:intergenic 30.0%
GTATGAATTGCTAAGTTGTT+GGG + chr5_4:46753949-46753968 None:intergenic 30.0%
!! TTTGATTCTTGGTTCTAACT+TGG - chr5_4:46753976-46753995 Msa0854320:intron 30.0%
!!! TGATCTTTGGTGTTTTGATT+TGG + chr5_4:46754075-46754094 None:intergenic 30.0%
!! CATGTAAACTTGTTGATCTT+TGG + chr5_4:46754088-46754107 None:intergenic 30.0%
TCTGAATTGAATAGGAAACA+TGG - chr5_4:46754190-46754209 Msa0854320:intron 30.0%
TGAATAGGAAACATGGAATT+TGG - chr5_4:46754197-46754216 Msa0854320:intron 30.0%
GAATAGGAAACATGGAATTT+GGG - chr5_4:46754198-46754217 Msa0854320:intron 30.0%
AATAGGAAACATGGAATTTG+GGG - chr5_4:46754199-46754218 Msa0854320:intron 30.0%
!!! TTTTCATGTCGATTTTAGTG+AGG - chr5_4:46754311-46754330 Msa0854320:intron 30.0%
GAGAGGAAGAAAAAAAATGA+AGG - chr5_4:46754382-46754401 Msa0854320:intron 30.0%
!!! TTTGGAATGTTTTAGAAGCT+TGG - chr5_4:46754416-46754435 Msa0854320:intron 30.0%
TTCTCGTATTACTATTCCAA+CGG + chr5_4:46754566-46754585 None:intergenic 30.0%
TTGAGAAAATCGACGATATT+TGG + chr5_4:46754594-46754613 None:intergenic 30.0%
TGGTATATTGCGTTTAATTC+TGG - chr5_4:46754885-46754904 Msa0854320:intron 30.0%
! TTTTGCAGATTGATCCATAA+TGG - chr5_4:46754946-46754965 Msa0854320:intron 30.0%
TGAAGAAGAAGAAGAAGTAA+GGG + chr5_4:46755011-46755030 None:intergenic 30.0%
ATGAAGAAGAAGAAGAAGTA+AGG + chr5_4:46755012-46755031 None:intergenic 30.0%
AACGCGTAAATTCAAAGAAA+CGG - chr5_4:46755451-46755470 Msa0854320:intron 30.0%
TTCATCTTAGAAGATACTTC+AGG + chr5_4:46755528-46755547 None:intergenic 30.0%
GAAACAAAGGAATTGAAACA+AGG - chr5_4:46755716-46755735 Msa0854320:intron 30.0%
!! TCTTTTATTAGCTTAGGTCA+TGG - chr5_4:46756085-46756104 Msa0854320:intron 30.0%
ACATATAAATCACCAAGAGT+GGG + chr5_4:46756150-46756169 None:intergenic 30.0%
AACATATAAATCACCAAGAG+TGG + chr5_4:46756151-46756170 None:intergenic 30.0%
TACCTGATCGGAAAAATATT+TGG + chr5_4:46756231-46756250 None:intergenic 30.0%
CATGATGACTCAAAGTTAAA+AGG + chr5_4:46756274-46756293 None:intergenic 30.0%
!!! AAAAAGAGCACGAGTTTTTT+GGG + chr5_4:46756366-46756385 None:intergenic 30.0%
AATGGGAAAGAACAGTAAAA+GGG + chr5_4:46756460-46756479 None:intergenic 30.0%
! AAAATAGAGCGTCATTAGTT+AGG + chr5_4:46756643-46756662 None:intergenic 30.0%
! ACATGACATGTCTAAAATGA+AGG - chr5_4:46756960-46756979 Msa0854320:intron 30.0%
! TGCAAGAATTCGTCTTTTTC+AGG + chr5_4:46747544-46747563 None:intergenic 35.0%
!! TGTTTTGAGCTTCTTTGAGT+CGG + chr5_4:46747671-46747690 None:intergenic 35.0%
AAGAAGCTCAAAACAGATGA+CGG - chr5_4:46747676-46747695 Msa0854320:three_prime_UTR 35.0%
!! AAAACAGATGACGGAAACAA+AGG - chr5_4:46747685-46747704 Msa0854320:exon 35.0%
ATCATCTTGAAATGAGGCTT+TGG + chr5_4:46747719-46747738 None:intergenic 35.0%
AGGTTCATCATCTTGAAATG+AGG + chr5_4:46747725-46747744 None:intergenic 35.0%
CATTTCAAGATGATGAACCT+TGG - chr5_4:46747725-46747744 Msa0854320:CDS 35.0%
TCATGATCATGATCATACCA+AGG + chr5_4:46747745-46747764 None:intergenic 35.0%
CAAATATTGAGGAACAAGTC+AGG + chr5_4:46747833-46747852 None:intergenic 35.0%
CTTCTTCCGAAGTTAATTGA+CGG - chr5_4:46747909-46747928 Msa0854320:CDS 35.0%
TAACTTCATGCCAATGTTAC+AGG + chr5_4:46747938-46747957 None:intergenic 35.0%
! GCATTCAAGTACCATCTTTT+AGG - chr5_4:46748020-46748039 Msa0854320:intron 35.0%
TATTCCTAATCTCCCTTTCT+TGG - chr5_4:46748114-46748133 Msa0854320:intron 35.0%
AGATGTGAATCACCAAGAAA+GGG + chr5_4:46748129-46748148 None:intergenic 35.0%
AAGATGTGAATCACCAAGAA+AGG + chr5_4:46748130-46748149 None:intergenic 35.0%
!! AAAAAGAGCACGGGTATTTT+AGG + chr5_4:46748368-46748387 None:intergenic 35.0%
AGCAACAAACAAAAAGAGCA+CGG + chr5_4:46748378-46748397 None:intergenic 35.0%
GATTTCCACTAGAATCAACA+TGG - chr5_4:46748409-46748428 Msa0854320:intron 35.0%
CAATGGGAAAGAACTGTAAA+AGG + chr5_4:46748466-46748485 None:intergenic 35.0%
TAGAGCAAATGTTGGACAAT+GGG + chr5_4:46748482-46748501 None:intergenic 35.0%
ATAGAGCAAATGTTGGACAA+TGG + chr5_4:46748483-46748502 None:intergenic 35.0%
!!! TCTCTTTTTTTCCCGTTTGT+AGG - chr5_4:46748510-46748529 Msa0854320:intron 35.0%
TCTGAACCTGACAAAATGAA+TGG + chr5_4:46748556-46748575 None:intergenic 35.0%
ATAGAGACCTAACTGATCTT+GGG - chr5_4:46748638-46748657 Msa0854320:intron 35.0%
TTTCTCTTGGATCTTGTCAT+TGG + chr5_4:46748700-46748719 None:intergenic 35.0%
GATTGAAGAATGTTACGAAG+AGG - chr5_4:46748726-46748745 Msa0854320:CDS 35.0%
! GACAACTCATTTTCACATAG+AGG + chr5_4:46748956-46748975 None:intergenic 35.0%
! TTTTCCACATCATGAAGTGA+AGG + chr5_4:46749047-46749066 None:intergenic 35.0%
!! CATGCTTTAAAATGTCTGTC+AGG + chr5_4:46749134-46749153 None:intergenic 35.0%
GAACAAGTCCTACATAACAT+TGG - chr5_4:46749260-46749279 Msa0854320:intron 35.0%
! TCGTGTTCCTGATTTTTATC+TGG - chr5_4:46749454-46749473 Msa0854320:intron 35.0%
TTACAGGTGTCAATTGGATT+GGG - chr5_4:46749493-46749512 Msa0854320:intron 35.0%
TAATCAAAATTAGACCGGAC+AGG + chr5_4:46749545-46749564 None:intergenic 35.0%
CGAGGTAATCAAAATTAGAC+CGG + chr5_4:46749550-46749569 None:intergenic 35.0%
!!! CGGTCTAATTTTGATTACCT+CGG - chr5_4:46749548-46749567 Msa0854320:intron 35.0%
AACAATATGAAATAGGACCG+AGG + chr5_4:46749568-46749587 None:intergenic 35.0%
TCGGAAAAAGAAAAGATCTC+GGG + chr5_4:46749651-46749670 None:intergenic 35.0%
! TGTGGCTTTTGATACTTGTT+AGG - chr5_4:46750010-46750029 Msa0854320:intron 35.0%
!! TTAGTTTTTCAATGCGAGTG+AGG + chr5_4:46750038-46750057 None:intergenic 35.0%
TCTTTCAATGGTGAAACATC+TGG - chr5_4:46750062-46750081 Msa0854320:intron 35.0%
TGGTGAAACATCTGGTTAAT+TGG - chr5_4:46750070-46750089 Msa0854320:intron 35.0%
!!! GTTTTGGTTTCTGCTACTTT+TGG - chr5_4:46750179-46750198 Msa0854320:intron 35.0%
TTGAACTGAGCCATTTATAC+AGG + chr5_4:46750375-46750394 None:intergenic 35.0%
CATCAGCAAAAACAGATAGT+TGG + chr5_4:46750409-46750428 None:intergenic 35.0%
!!! ACTATCTGTTTTTGCTGATG+TGG - chr5_4:46750409-46750428 Msa0854320:intron 35.0%
TGAAGATAGTAAAACACGCA+AGG + chr5_4:46750438-46750457 None:intergenic 35.0%
! TTGCGTGTTTTACTATCTTC+AGG - chr5_4:46750437-46750456 Msa0854320:intron 35.0%
!! TATCTTCAGGTTGTTGCATT+TGG - chr5_4:46750450-46750469 Msa0854320:intron 35.0%
!! GCATTAAGCTTTAAGTTTCC+TGG + chr5_4:46750551-46750570 None:intergenic 35.0%
GGTTCAATAGGAAAAACAGA+AGG - chr5_4:46750608-46750627 Msa0854320:intron 35.0%
GAGGTTATTGATGTCAAACT+AGG - chr5_4:46750716-46750735 Msa0854320:intron 35.0%
! GTTGAAGGATTCTTAGGTTT+TGG - chr5_4:46750776-46750795 Msa0854320:intron 35.0%
TGCCATTGTATGTTTGTTTG+AGG - chr5_4:46750841-46750860 Msa0854320:intron 35.0%
!! ATATCAGAAGTGGCTTTTTC+TGG - chr5_4:46750953-46750972 Msa0854320:intron 35.0%
!!! AAGTGGCTTTTTCTGGTTAT+AGG - chr5_4:46750960-46750979 Msa0854320:intron 35.0%
GGCCATAGATGTAACATATT+TGG - chr5_4:46751282-46751301 Msa0854320:intron 35.0%
CTTTGCAAGTTAGACCTTTA+AGG - chr5_4:46751586-46751605 Msa0854320:intron 35.0%
CACTGTGTTGTGTTAACAAT+GGG - chr5_4:46751612-46751631 Msa0854320:intron 35.0%
ACTGTGTTGTGTTAACAATG+GGG - chr5_4:46751613-46751632 Msa0854320:intron 35.0%
TAACAGCAGAGAGAGAAAAA+TGG - chr5_4:46752016-46752035 Msa0854320:intron 35.0%
GGAAAAAAGCTAGGGAATTA+GGG + chr5_4:46752347-46752366 None:intergenic 35.0%
!! TTTTGGAGGGAAAAAAGCTA+GGG + chr5_4:46752355-46752374 None:intergenic 35.0%
GTGTCATATACTTAGTGTAG+GGG + chr5_4:46752547-46752566 None:intergenic 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
ATAATGTAGCCTATGACGTA+CGG + chr5_4:46752579-46752598 None:intergenic 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
ATAATGTAGCCTATGACGTA+CGG + chr5_4:46752579-46752598 None:intergenic 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
ATAATGTAGCCTATGACGTA+CGG + chr5_4:46752579-46752598 None:intergenic 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
ATAATGTAGCCTATGACGTA+CGG + chr5_4:46752579-46752598 None:intergenic 35.0%
TTATCTCTCGTTGTAGCAAA+CGG - chr5_4:46752595-46752614 Msa0854320:intron 35.0%
TGACTGTTATGCCTTATGAA+TGG + chr5_4:46753274-46753293 None:intergenic 35.0%
TAGTTAGAAAACCCACCTTT+GGG + chr5_4:46753368-46753387 None:intergenic 35.0%
TTAGTTAGAAAACCCACCTT+TGG + chr5_4:46753369-46753388 None:intergenic 35.0%
!! AAGGTGGGTTTTCTAACTAA+AGG - chr5_4:46753369-46753388 Msa0854320:intron 35.0%
!! AAAAAAGTGCTTATGGAGCA+TGG + chr5_4:46753452-46753471 None:intergenic 35.0%
GAAAGCAGAACAATAAGCTA+TGG + chr5_4:46753490-46753509 None:intergenic 35.0%
GTTGAATTGCGAAGTTAAGT+TGG + chr5_4:46753719-46753738 None:intergenic 35.0%
!! CGGGTTTTGACATAATTTTG+CGG + chr5_4:46753747-46753766 None:intergenic 35.0%
CAGAAAACACGTTTGAACTT+TGG + chr5_4:46753793-46753812 None:intergenic 35.0%
CTAAACTGAAGGGAATTGAA+AGG - chr5_4:46753849-46753868 Msa0854320:intron 35.0%
!! GTATCTTTTGCTGTGTAGTT+TGG + chr5_4:46753905-46753924 None:intergenic 35.0%
GGTATGAATTGCTAAGTTGT+TGG + chr5_4:46753950-46753969 None:intergenic 35.0%
ATACCTCAGTCTTTGATTCT+TGG - chr5_4:46753965-46753984 Msa0854320:intron 35.0%
GTACTTAGAAGCTTCAAATG+GGG + chr5_4:46754053-46754072 None:intergenic 35.0%
GGTACTTAGAAGCTTCAAAT+GGG + chr5_4:46754054-46754073 None:intergenic 35.0%
TGGTACTTAGAAGCTTCAAA+TGG + chr5_4:46754055-46754074 None:intergenic 35.0%
AACATGGAATTTGGGGATAA+AGG - chr5_4:46754206-46754225 Msa0854320:intron 35.0%
! TAAAGGTATGATTCAGCTGA+TGG - chr5_4:46754223-46754242 Msa0854320:intron 35.0%
!! TTTTAGAAGCTTGGAGAAAG+TGG - chr5_4:46754425-46754444 Msa0854320:intron 35.0%
TTTAGAAGCTTGGAGAAAGT+GGG - chr5_4:46754426-46754445 Msa0854320:intron 35.0%
! GAAGGGCAATTTGGTAATTT+GGG + chr5_4:46754488-46754507 None:intergenic 35.0%
! TGAAGGGCAATTTGGTAATT+TGG + chr5_4:46754489-46754508 None:intergenic 35.0%
AATTACCAAATTGCCCTTCA+AGG - chr5_4:46754489-46754508 Msa0854320:intron 35.0%
ATTACCAAATTGCCCTTCAA+GGG - chr5_4:46754490-46754509 Msa0854320:intron 35.0%
! ATTGTGTCTTTTCCCTTGAA+GGG + chr5_4:46754505-46754524 None:intergenic 35.0%
! AATTGTGTCTTTTCCCTTGA+AGG + chr5_4:46754506-46754525 None:intergenic 35.0%
AACGGACATGAGAAATTAAG+TGG + chr5_4:46754548-46754567 None:intergenic 35.0%
ACTTAATTTCTCATGTCCGT+TGG - chr5_4:46754547-46754566 Msa0854320:intron 35.0%
AAAATTACGCGGGATATTAC+AGG - chr5_4:46754676-46754695 Msa0854320:intron 35.0%
AACAACGACAATTTCTCGAT+TGG + chr5_4:46754791-46754810 None:intergenic 35.0%
! TAGGGTTTTGCACTCAATTA+GGG + chr5_4:46754861-46754880 None:intergenic 35.0%
AACGCAATATACCAGAACTA+GGG + chr5_4:46754879-46754898 None:intergenic 35.0%
AAACGCAATATACCAGAACT+AGG + chr5_4:46754880-46754899 None:intergenic 35.0%
! ATTGCGTTTAATTCTGGTTG+CGG - chr5_4:46754891-46754910 Msa0854320:intron 35.0%
AGGTTTATCTTTGGCCATTA+TGG + chr5_4:46754963-46754982 None:intergenic 35.0%
TAAGTCGTGTCTCTATTAGA+AGG + chr5_4:46755238-46755257 None:intergenic 35.0%
TAAGTGTATTGCAGAACAGT+TGG - chr5_4:46755596-46755615 Msa0854320:intron 35.0%
AAGTGTATTGCAGAACAGTT+GGG - chr5_4:46755597-46755616 Msa0854320:intron 35.0%
! AAGACGAATGATGGAAACAA+AGG - chr5_4:46755703-46755722 Msa0854320:intron 35.0%
GAAACAAGGAAATCACCAAT+TGG - chr5_4:46755730-46755749 Msa0854320:intron 35.0%
TCATGATCATGATCATACCA+AGG + chr5_4:46747745-46747764 None:intergenic 35.0%
TAAGGTCATGCCAATGTTAT+AGG + chr5_4:46755977-46755996 None:intergenic 35.0%
! GCATTCAAGTACCATCTTTT+AGG - chr5_4:46748020-46748039 Msa0854320:intron 35.0%
! TGCCAAATATTTTTCCGATC+AGG - chr5_4:46756226-46756245 Msa0854320:intron 35.0%
!!! CAAAAAGAGCACGAGTTTTT+TGG + chr5_4:46756367-46756386 None:intergenic 35.0%
!! TCACATCATGTTGATTCTAG+TGG + chr5_4:46756415-46756434 None:intergenic 35.0%
CAATGGGAAAGAACAGTAAA+AGG + chr5_4:46756461-46756480 None:intergenic 35.0%
TAGAGCAAATGTTGGACAAT+GGG + chr5_4:46748482-46748501 None:intergenic 35.0%
ATAGAGCAAATGTTGGACAA+TGG + chr5_4:46748483-46748502 None:intergenic 35.0%
ACAAACGATAGAGCAAATGT+TGG + chr5_4:46756485-46756504 None:intergenic 35.0%
! TCTCATGTTTTCCCATTTGT+AGG - chr5_4:46756505-46756524 Msa0854320:intron 35.0%
TCTGAACCTGACAAAATGAA+CGG + chr5_4:46748556-46748575 None:intergenic 35.0%
AGCTGATATTGCTCTGATAA+TGG + chr5_4:46756620-46756639 None:intergenic 35.0%
TTTCTCTTGGAACTTGTCAT+TGG + chr5_4:46756725-46756744 None:intergenic 35.0%
TTCCAAGAGAAAGAAATTGC+TGG - chr5_4:46756733-46756752 Msa0854320:intron 35.0%
ATCCAGCAATTTCTTTCTCT+TGG + chr5_4:46756738-46756757 None:intergenic 35.0%
! GCTGGATGAATTTTACAAAG+AGG - chr5_4:46756751-46756770 Msa0854320:intron 35.0%
TCCATGGAAGAGAAATTCAT+TGG - chr5_4:46756812-46756831 Msa0854320:intron 35.0%
TCCAATGAATTTCTCTTCCA+TGG + chr5_4:46756816-46756835 None:intergenic 35.0%
AACAACGAATATCCTATGCA+CGG - chr5_4:46756997-46757016 Msa0854320:five_prime_UTR 35.0%
!!! TGATTTTGATTACCGTGCAT+AGG + chr5_4:46757012-46757031 None:intergenic 35.0%
TTCATTGTAGATGGTGCTTC+AGG + chr5_4:46747511-46747530 None:intergenic 40.0%
CTTTGAGTCGGTATTCAAGA+CGG + chr5_4:46747659-46747678 None:intergenic 40.0%
TATTGAGGAACAAGTCAGGT+CGG + chr5_4:46747829-46747848 None:intergenic 40.0%
ACTTCGGAAGAAGATATCAG+AGG + chr5_4:46747902-46747921 None:intergenic 40.0%
ATCACCAAGAAAGGGAGATT+AGG + chr5_4:46748121-46748140 None:intergenic 40.0%
! GCAACAAACAAAAAGAGCAC+GGG + chr5_4:46748377-46748396 None:intergenic 40.0%
GACAAAATGAATGGTTCGTC+TGG + chr5_4:46748547-46748566 None:intergenic 40.0%
! GACGAACCATTCATTTTGTC+AGG - chr5_4:46748547-46748566 Msa0854320:intron 40.0%
!! GATAATGGAGTTACTTCACG+AGG + chr5_4:46748610-46748629 None:intergenic 40.0%
TCTCTATGACGAGGTGATAA+TGG + chr5_4:46748625-46748644 None:intergenic 40.0%
CATAGAGACCTAACTGATCT+TGG - chr5_4:46748637-46748656 Msa0854320:intron 40.0%
AACACATCATACCCTCACAA+CGG + chr5_4:46748812-46748831 None:intergenic 40.0%
CATGCTTAAACATGTCTGTC+AGG + chr5_4:46749086-46749105 None:intergenic 40.0%
AAGGCCTCAAACTAAGTTGT+GGG + chr5_4:46749301-46749320 None:intergenic 40.0%
CAGGAACACGAGATAAAAAC+CGG + chr5_4:46749445-46749464 None:intergenic 40.0%
ATCCAATTGACACCTGTAAC+CGG + chr5_4:46749492-46749511 None:intergenic 40.0%
GTTACAGGTGTCAATTGGAT+TGG - chr5_4:46749492-46749511 Msa0854320:intron 40.0%
! AATTGGATTGGGCATAGGAT+TGG - chr5_4:46749504-46749523 Msa0854320:intron 40.0%
! GTGTCTTGCATGACACTTTT+CGG + chr5_4:46749670-46749689 None:intergenic 40.0%
TTAATTGGAGTGTACAAGCG+AGG - chr5_4:46750085-46750104 Msa0854320:intron 40.0%
TAATTGGAGTGTACAAGCGA+GGG - chr5_4:46750086-46750105 Msa0854320:intron 40.0%
ATCAGAAGACACATCTGCTA+TGG - chr5_4:46750494-46750513 Msa0854320:intron 40.0%
ATGTCAAACTAGGTAGTCTC+TGG - chr5_4:46750726-46750745 Msa0854320:intron 40.0%
TGTCAAACTAGGTAGTCTCT+GGG - chr5_4:46750727-46750746 Msa0854320:intron 40.0%
TTAGTACCAGGGTCTGATTT+GGG - chr5_4:46750927-46750946 Msa0854320:intron 40.0%
ATTTGGGCTCATATCAGAAG+TGG - chr5_4:46750943-46750962 Msa0854320:intron 40.0%
!!! CTTTTTCTGGTTATAGGCTC+AGG - chr5_4:46750966-46750985 Msa0854320:intron 40.0%
! AAATCCTTGTGGTCAAGTTG+TGG - chr5_4:46751146-46751165 Msa0854320:intron 40.0%
! AGTTGTGGTGATGAAAGCTT+AGG - chr5_4:46751161-46751180 Msa0854320:intron 40.0%
GCATGCTCGAGAATTTAGTA+GGG - chr5_4:46751197-46751216 Msa0854320:intron 40.0%
TCGAGAATTTAGTAGGGCTA+TGG - chr5_4:46751203-46751222 Msa0854320:intron 40.0%
CCATTGTTAACACAACACAG+TGG + chr5_4:46751614-46751633 None:intergenic 40.0%
CCACTGTGTTGTGTTAACAA+TGG - chr5_4:46751611-46751630 Msa0854320:intron 40.0%
CTGTGTTGTGTTAACAATGG+GGG - chr5_4:46751614-46751633 Msa0854320:intron 40.0%
TGTGTTGTGTTAACAATGGG+GGG - chr5_4:46751615-46751634 Msa0854320:intron 40.0%
TGTTAACAATGGGGGGAATA+TGG - chr5_4:46751622-46751641 Msa0854320:intron 40.0%
GTTAACAATGGGGGGAATAT+GGG - chr5_4:46751623-46751642 Msa0854320:intron 40.0%
TAGGGAATTAGGGCAAAGTA+GGG + chr5_4:46752337-46752356 None:intergenic 40.0%
GGGAAAAAAGCTAGGGAATT+AGG + chr5_4:46752348-46752367 None:intergenic 40.0%
!!! GTTTTGGAGGGAAAAAAGCT+AGG + chr5_4:46752356-46752375 None:intergenic 40.0%
GATGTGATCAAGTGCTTGAA+CGG + chr5_4:46752406-46752425 None:intergenic 40.0%
!! GAATGTTGACCGACTTGATT+AGG + chr5_4:46752491-46752510 None:intergenic 40.0%
TACTATGAACCGTACGTCAT+AGG - chr5_4:46752620-46752639 Msa0854320:intron 40.0%
TAATGTAGCCTATGACGTAC+GGG + chr5_4:46752631-46752650 None:intergenic 40.0%
TAATGTAGCCTATGACGTAC+GGG + chr5_4:46752631-46752650 None:intergenic 40.0%
TACTATGACTCGTACGTCAT+AGG - chr5_4:46752779-46752798 Msa0854320:intron 40.0%
TAATGTAGCCTATGACGTAC+GGG + chr5_4:46752631-46752650 None:intergenic 40.0%
TAATGTAGCCTATGACGTAC+GGG + chr5_4:46752631-46752650 None:intergenic 40.0%
GGAACTCACCAATACATCTT+TGG - chr5_4:46753390-46753409 Msa0854320:intron 40.0%
TGAAGTGGCCAAAGATGTAT+TGG + chr5_4:46753401-46753420 None:intergenic 40.0%
ATCAGCTCAAGCATCAACAA+AGG - chr5_4:46753421-46753440 Msa0854320:intron 40.0%
TGGCAGAAGTGATGAGATTA+TGG + chr5_4:46753540-46753559 None:intergenic 40.0%
TCCTGACAGATTTCCCAAAA+CGG - chr5_4:46753585-46753604 Msa0854320:intron 40.0%
!! AGCTGCAAATAAGCCGTTTT+GGG + chr5_4:46753601-46753620 None:intergenic 40.0%
! AAGCTGCAAATAAGCCGTTT+TGG + chr5_4:46753602-46753621 None:intergenic 40.0%
!! GAATTGCGAAGTTAAGTTGG+TGG + chr5_4:46753716-46753735 None:intergenic 40.0%
ATCCTGCTGAAAGTCACTTA+CGG + chr5_4:46753767-46753786 None:intergenic 40.0%
TAAGTTGTTGGGACATGTTC+TGG + chr5_4:46753938-46753957 None:intergenic 40.0%
GAACCAAGAATCAAAGACTG+AGG + chr5_4:46753971-46753990 None:intergenic 40.0%
GGTTCACAAGGAACAAATGA+TGG + chr5_4:46754125-46754144 None:intergenic 40.0%
TATATGACACAAGCAAGCCA+TGG + chr5_4:46754265-46754284 None:intergenic 40.0%
!! CGATTTTAGTGAGGATTGAG+TGG - chr5_4:46754320-46754339 Msa0854320:intron 40.0%
! TTTTCCCTTGAAGGGCAATT+TGG + chr5_4:46754497-46754516 None:intergenic 40.0%
AAGTGGTTATGAATTAGCGG+AGG + chr5_4:46754531-46754550 None:intergenic 40.0%
! CTAGGGTTTTGCACTCAATT+AGG + chr5_4:46754862-46754881 None:intergenic 40.0%
TAAGTGTATTGCCCATCAGT+TGG - chr5_4:46755319-46755338 Msa0854320:intron 40.0%
AAGTGTATTGCCCATCAGTT+GGG - chr5_4:46755320-46755339 Msa0854320:intron 40.0%
AACTAAGTAAGAGACGAGTG+CGG + chr5_4:46755377-46755396 None:intergenic 40.0%
! ATGCGCTTCTTTGACTTCAT+AGG + chr5_4:46755420-46755439 None:intergenic 40.0%
AAGAAGCTCAAGACGAATGA+TGG - chr5_4:46755694-46755713 Msa0854320:intron 40.0%
TCATCTTGGAATGAGGCTTT+GGG + chr5_4:46755757-46755776 None:intergenic 40.0%
ATCATCTTGGAATGAGGCTT+TGG + chr5_4:46755758-46755777 None:intergenic 40.0%
AGGATCATCATCTTGGAATG+AGG + chr5_4:46755764-46755783 None:intergenic 40.0%
CATTCCAAGATGATGATCCT+TGG - chr5_4:46755764-46755783 Msa0854320:intron 40.0%
CATACCAAGGATCATCATCT+TGG + chr5_4:46755771-46755790 None:intergenic 40.0%
CAAATACTGAGGAACAAGTC+AGG + chr5_4:46755872-46755891 None:intergenic 40.0%
TTGACGACTGCCTATAACAT+TGG - chr5_4:46755964-46755983 Msa0854320:intron 40.0%
! GATTGAAGCGACATCGATTA+AGG + chr5_4:46755995-46756014 None:intergenic 40.0%
TATTCCTAATCTCCCACTCT+TGG - chr5_4:46756135-46756154 Msa0854320:intron 40.0%
TGTAGAACACAGTACCTGAT+CGG + chr5_4:46748244-46748263 None:intergenic 40.0%
ACAAAATGAACGGTTCGTCT+GGG + chr5_4:46756541-46756560 None:intergenic 40.0%
!! GATAATGGAGTTACTTCACG+AGG + chr5_4:46748610-46748629 None:intergenic 40.0%
TTGGGTCCAATGATGATCTT+GGG - chr5_4:46756690-46756709 Msa0854320:intron 40.0%
AATGATGATCTTGGGGATCA+GGG - chr5_4:46756698-46756717 Msa0854320:intron 40.0%
CTCTGATCAGTACAAATCCA+TGG - chr5_4:46756796-46756815 Msa0854320:intron 40.0%
ACATGTCATGTGCAATGCAT+GGG + chr5_4:46756951-46756970 None:intergenic 40.0%
AGGCAGCCGTCAATTAACTT+CGG + chr5_4:46747918-46747937 None:intergenic 45.0%
GTGTGTGTGTGTGTGTGTAT+TGG - chr5_4:46747998-46748017 Msa0854320:CDS 45.0%
!! GCACACCATGTTGATTCTAG+TGG + chr5_4:46748417-46748436 None:intergenic 45.0%
TGATTGCGGAACCTACAAAC+GGG + chr5_4:46748524-46748543 None:intergenic 45.0%
GTGATTGCGGAACCTACAAA+CGG + chr5_4:46748525-46748544 None:intergenic 45.0%
AATGGTTCGTCTGGTGATTG+CGG + chr5_4:46748538-46748557 None:intergenic 45.0%
ATGGAGTTACTTCACGAGGA+GGG + chr5_4:46748606-46748625 None:intergenic 45.0%
AATGGAGTTACTTCACGAGG+AGG + chr5_4:46748607-46748626 None:intergenic 45.0%
TCAGTTAGGTCTCTATGACG+AGG + chr5_4:46748634-46748653 None:intergenic 45.0%
CATTGGACCCAAGATCAGTT+AGG + chr5_4:46748648-46748667 None:intergenic 45.0%
CGAAGAGGTTGAGATTGTAC+TGG - chr5_4:46748741-46748760 Msa0854320:CDS 45.0%
! AGATTGTACTGGCCTCTGAA+TGG - chr5_4:46748752-46748771 Msa0854320:CDS 45.0%
CATGGATTTGCACCATTCAG+AGG + chr5_4:46748767-46748786 None:intergenic 45.0%
CTCTGAATGGTGCAAATCCA+TGG - chr5_4:46748765-46748784 Msa0854320:CDS 45.0%
ACACATCATACCCTCACAAC+GGG + chr5_4:46748811-46748830 None:intergenic 45.0%
GCGATGTGAACGAAACAAAG+AGG + chr5_4:46749022-46749041 None:intergenic 45.0%
TCCACATCATGAAGTGAAGG+AGG + chr5_4:46749044-46749063 None:intergenic 45.0%
GAAGGCCTCAAACTAAGTTG+TGG + chr5_4:46749302-46749321 None:intergenic 45.0%
! GTTTGAGGCCTTCAATTGTG+AGG - chr5_4:46749309-46749328 Msa0854320:intron 45.0%
! CGAATTGGCCTCACAATTGA+AGG + chr5_4:46749320-46749339 None:intergenic 45.0%
TCCGGTTGAACTTGTGTAAC+TGG - chr5_4:46749408-46749427 Msa0854320:intron 45.0%
GCCAGTTACACAAGTTCAAC+CGG + chr5_4:46749412-46749431 None:intergenic 45.0%
GAACACGAGATAAAAACCGG+CGG + chr5_4:46749442-46749461 None:intergenic 45.0%
!! TATCTGGTTCTATCACAGGC+CGG - chr5_4:46749470-46749489 Msa0854320:intron 45.0%
! GTGTCAATTGGATTGGGCAT+AGG - chr5_4:46749499-46749518 Msa0854320:intron 45.0%
!! AGGATTGGTTCCAGGTTGAA+TGG - chr5_4:46749519-46749538 Msa0854320:intron 45.0%
GAAGACACATCTGCTATGGT+TGG - chr5_4:46750498-46750517 Msa0854320:intron 45.0%
AGAAGCGAGAAACTCTTGCT+TGG - chr5_4:46750584-46750603 Msa0854320:intron 45.0%
! CTCTTGCTTGGTGGTTCAAT+AGG - chr5_4:46750596-46750615 Msa0854320:intron 45.0%
GTTAGTACCAGGGTCTGATT+TGG - chr5_4:46750926-46750945 Msa0854320:intron 45.0%
!! TTTCTGGTTATAGGCTCAGG+AGG - chr5_4:46750969-46750988 Msa0854320:intron 45.0%
ATCACCACAACTTGACCACA+AGG + chr5_4:46751153-46751172 None:intergenic 45.0%
! TGTGGTGATGAAAGCTTAGG+AGG - chr5_4:46751164-46751183 Msa0854320:intron 45.0%
AAGCTTAGGAGGCTAAGCAA+TGG - chr5_4:46751175-46751194 Msa0854320:intron 45.0%
GGCATGCTCGAGAATTTAGT+AGG - chr5_4:46751196-46751215 Msa0854320:intron 45.0%
ACAACACAGTGGCTCCTTAA+AGG + chr5_4:46751603-46751622 None:intergenic 45.0%
CATTTGGTTATCATCCCCCT+AGG + chr5_4:46751651-46751670 None:intergenic 45.0%
AGATCTTCAACCCATGCGAA+CGG - chr5_4:46751863-46751882 Msa0854320:intron 45.0%
CTAGGGAATTAGGGCAAAGT+AGG + chr5_4:46752338-46752357 None:intergenic 45.0%
TACTATGACCCGTACGTCAT+AGG - chr5_4:46752673-46752692 Msa0854320:intron 45.0%
TACTATGACCCGTACGTCAT+AGG - chr5_4:46752673-46752692 Msa0854320:intron 45.0%
TACTATGACCCGTACGTCAT+AGG - chr5_4:46752673-46752692 Msa0854320:intron 45.0%
TACTATGACCCGTACGTCAT+AGG - chr5_4:46752673-46752692 Msa0854320:intron 45.0%
GATGCTTGAGCTGATTGAAG+TGG + chr5_4:46753416-46753435 None:intergenic 45.0%
TCCTGCTGAAAGTCACTTAC+GGG + chr5_4:46753766-46753785 None:intergenic 45.0%
TAGCTACACTTCTATCACGC+AGG - chr5_4:46754020-46754039 Msa0854320:intron 45.0%
!! CTTGTGAGCTTTGAGCTTGA+GGG + chr5_4:46754158-46754177 None:intergenic 45.0%
AGGTATGATTCAGCTGATGG+AGG - chr5_4:46754226-46754245 Msa0854320:intron 45.0%
GGTATGATTCAGCTGATGGA+GGG - chr5_4:46754227-46754246 Msa0854320:intron 45.0%
GGATTGAGTGGAAGAAGCAA+TGG - chr5_4:46754332-46754351 Msa0854320:intron 45.0%
TGGAAGAAGCAATGGAGAGA+AGG - chr5_4:46754340-46754359 Msa0854320:intron 45.0%
AGAAGCAATGGAGAGAAGGA+AGG - chr5_4:46754344-46754363 Msa0854320:intron 45.0%
GGAGAGAAGGAAGGATGATA+AGG - chr5_4:46754353-46754372 Msa0854320:intron 45.0%
TGAGTGCAAAACCCTAGTTC+TGG - chr5_4:46754865-46754884 Msa0854320:intron 45.0%
GCTGAAGATGAGCATGATCA+TGG - chr5_4:46755296-46755315 Msa0854320:intron 45.0%
TATTGCCCATCAGTTGGGTT+GGG - chr5_4:46755325-46755344 Msa0854320:intron 45.0%
TGTATCCCAACCCAACTGAT+GGG + chr5_4:46755333-46755352 None:intergenic 45.0%
TTGTATCCCAACCCAACTGA+TGG + chr5_4:46755334-46755353 None:intergenic 45.0%
ACCTGAAGAAGACGAACTCT+TGG - chr5_4:46755557-46755576 Msa0854320:intron 45.0%
TCCAAGAGTTCGTCTTCTTC+AGG + chr5_4:46755561-46755580 None:intergenic 45.0%
!! AATGAGGCTTTGGGTCCAAT+TGG + chr5_4:46755748-46755767 None:intergenic 45.0%
GGCTTACAATACGCTGGTAT+CGG + chr5_4:46755847-46755866 None:intergenic 45.0%
TACTGAGGAACAAGTCAGGT+TGG + chr5_4:46755868-46755887 None:intergenic 45.0%
AGGCAGTCGTCAATGAACTT+CGG + chr5_4:46755957-46755976 None:intergenic 45.0%
ATCACCAAGAGTGGGAGATT+AGG + chr5_4:46756142-46756161 None:intergenic 45.0%
GGATTGCGGAACCTACAAAT+GGG + chr5_4:46756519-46756538 None:intergenic 45.0%
CAAAATGAACGGTTCGTCTG+GGG + chr5_4:46756540-46756559 None:intergenic 45.0%
GACAAAATGAACGGTTCGTC+TGG + chr5_4:46756542-46756561 None:intergenic 45.0%
! GACGAACCGTTCATTTTGTC+AGG - chr5_4:46756542-46756561 Msa0854320:intron 45.0%
ATGGAGTTACTTCACGAGGA+GGG + chr5_4:46748606-46748625 None:intergenic 45.0%
AATGGAGTTACTTCACGAGG+AGG + chr5_4:46748607-46748626 None:intergenic 45.0%
ACCTTCTCGTAGAGACCTAA+CGG - chr5_4:46756664-46756683 Msa0854320:intron 45.0%
! GTAGAGACCTAACGGATCTT+GGG - chr5_4:46756672-46756691 Msa0854320:intron 45.0%
CTTGGGTCCAATGATGATCT+TGG - chr5_4:46756689-46756708 Msa0854320:intron 45.0%
TGGGTCCAATGATGATCTTG+GGG - chr5_4:46756691-46756710 Msa0854320:intron 45.0%
CTGATCCCCAAGATCATCAT+TGG + chr5_4:46756699-46756718 None:intergenic 45.0%
CAATGATGATCTTGGGGATC+AGG - chr5_4:46756697-46756716 Msa0854320:intron 45.0%
CAAAGAGGCTGAGATTGAGA+TGG - chr5_4:46756766-46756785 Msa0854320:intron 45.0%
! GCATGGGTTAACACACTAGT+TGG + chr5_4:46756935-46756954 None:intergenic 45.0%
GACATGTCATGTGCAATGCA+TGG + chr5_4:46756952-46756971 None:intergenic 45.0%
!! TAAAATTAAATAGTATATAA+TGG + chr5_4:46748313-46748332 None:intergenic 5.0%
!! TAAAATTAAATAGTATATAA+TGG + chr5_4:46748313-46748332 None:intergenic 5.0%
! CAGGTCGGCTTACAATACGA+TGG + chr5_4:46747814-46747833 None:intergenic 50.0%
TTGACGGCTGCCTGTAACAT+TGG - chr5_4:46747925-46747944 Msa0854320:CDS 50.0%
TTACTTCACGAGGAGGGGTA+TGG + chr5_4:46748600-46748619 None:intergenic 50.0%
TGGAGTTACTTCACGAGGAG+GGG + chr5_4:46748605-46748624 None:intergenic 50.0%
!! TCTTTGAAGTGCCCGTTGTG+AGG - chr5_4:46748797-46748816 Msa0854320:CDS 50.0%
!! CTTTGAAGTGCCCGTTGTGA+GGG - chr5_4:46748798-46748817 Msa0854320:CDS 50.0%
GCCTCCTTCACTTCATGATG+TGG - chr5_4:46749040-46749059 Msa0854320:CDS 50.0%
! GGTGCCCACAACTTAGTTTG+AGG - chr5_4:46749294-46749313 Msa0854320:intron 50.0%
TTCTATCACAGGCCGGTTAC+AGG - chr5_4:46749477-46749496 Msa0854320:intron 50.0%
!! TTGGGCATAGGATTGGTTCC+AGG - chr5_4:46749511-46749530 Msa0854320:intron 50.0%
AGCGAGAAACTCTTGCTTGG+TGG - chr5_4:46750587-46750606 Msa0854320:intron 50.0%
TATGAGCCCAAATCAGACCC+TGG + chr5_4:46750936-46750955 None:intergenic 50.0%
GATCTTCAACCCATGCGAAC+GGG - chr5_4:46751864-46751883 Msa0854320:intron 50.0%
TATAAACGGCCCGTTCGCAT+GGG + chr5_4:46751876-46751895 None:intergenic 50.0%
GGGCAAAGTAGGGAGGATTA+GGG + chr5_4:46752327-46752346 None:intergenic 50.0%
AGGGCAAAGTAGGGAGGATT+AGG + chr5_4:46752328-46752347 None:intergenic 50.0%
GGAATTAGGGCAAAGTAGGG+AGG + chr5_4:46752334-46752353 None:intergenic 50.0%
!!! GCCGTTTTGGGAAATCTGTC+AGG + chr5_4:46753589-46753608 None:intergenic 50.0%
ACCCGTAAGTGACTTTCAGC+AGG - chr5_4:46753762-46753781 Msa0854320:intron 50.0%
!! GCTTGTGAGCTTTGAGCTTG+AGG + chr5_4:46754159-46754178 None:intergenic 50.0%
GAGGGAGAAGAGGAAATCCA+TGG - chr5_4:46754245-46754264 Msa0854320:intron 50.0%
GGATGATAAGGACGAGAGAG+AGG - chr5_4:46754365-46754384 Msa0854320:intron 50.0%
GTATTGCCCATCAGTTGGGT+TGG - chr5_4:46755324-46755343 Msa0854320:intron 50.0%
!! CAGGTTGGCTTACAATACGC+TGG + chr5_4:46755853-46755872 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+TGG - chr5_4:46747992-46748011 Msa0854320:CDS 50.0%
GGGATTGCGGAACCTACAAA+TGG + chr5_4:46756520-46756539 None:intergenic 50.0%
TTACTTCACGAGGAGGGGTA+TGG + chr5_4:46748600-46748619 None:intergenic 50.0%
TGGAGTTACTTCACGAGGAG+GGG + chr5_4:46748605-46748624 None:intergenic 50.0%
TCCGTTAGGTCTCTACGAGA+AGG + chr5_4:46756668-46756687 None:intergenic 50.0%
! CGTAGAGACCTAACGGATCT+TGG - chr5_4:46756671-46756690 Msa0854320:intron 50.0%
CATTGGACCCAAGATCCGTT+AGG + chr5_4:46756682-46756701 None:intergenic 50.0%
GGCTGAGATTGAGATGGAAC+TGG - chr5_4:46756772-46756791 Msa0854320:intron 50.0%
AACACTTCATACCCTCGCAG+CGG + chr5_4:46756843-46756862 None:intergenic 50.0%
! TCACGAGGAGGGGTATGGAA+TGG + chr5_4:46748595-46748614 None:intergenic 55.0%
AAGACCAGGTGCGGCATCAT+TGG + chr5_4:46748665-46748684 None:intergenic 55.0%
AATGATGCCGCACCTGGTCT+TGG - chr5_4:46748664-46748683 Msa0854320:intron 55.0%
! ATGATGCCGCACCTGGTCTT+GGG - chr5_4:46748665-46748684 Msa0854320:intron 55.0%
GGCCGGTTACAGGTGTCAAT+TGG - chr5_4:46749487-46749506 Msa0854320:intron 55.0%
! TCCAGGTTGAATGGCCTGTC+CGG - chr5_4:46749528-46749547 Msa0854320:intron 55.0%
AAGCGAGGGCAAGGCAGAAT+AGG - chr5_4:46750100-46750119 Msa0854320:intron 55.0%
GTATAAACGGCCCGTTCGCA+TGG + chr5_4:46751877-46751896 None:intergenic 55.0%
!! GGTGCTGTTGTGGGTTCACA+AGG + chr5_4:46754137-46754156 None:intergenic 55.0%
!! GAGCTTGAGGGTGCTGTTGT+GGG + chr5_4:46754146-46754165 None:intergenic 55.0%
!! TGAGCTTGAGGGTGCTGTTG+TGG + chr5_4:46754147-46754166 None:intergenic 55.0%
TCAGCTGATGGAGGGAGAAG+AGG - chr5_4:46754235-46754254 Msa0854320:intron 55.0%
AACGGTTCGTCTGGGGATTG+CGG + chr5_4:46756533-46756552 None:intergenic 55.0%
! TCACGAGGAGGGGTATGGAA+TGG + chr5_4:46748595-46748614 None:intergenic 55.0%
ACACTTCATACCCTCGCAGC+GGG + chr5_4:46756842-46756861 None:intergenic 55.0%
!! TGATGCCGCACCTGGTCTTG+GGG - chr5_4:46748666-46748685 Msa0854320:intron 60.0%
! GTAACTGGCTCAACAGCCGC+CGG - chr5_4:46749423-46749442 Msa0854320:intron 60.0%
ACCGGACAGGCCATTCAACC+TGG + chr5_4:46749532-46749551 None:intergenic 60.0%
GGAGTGTACAAGCGAGGGCA+AGG - chr5_4:46750091-46750110 Msa0854320:intron 60.0%
TGGGGGGAATATGGGCTCCT+AGG - chr5_4:46751631-46751650 Msa0854320:intron 60.0%
GGGGGGAATATGGGCTCCTA+GGG - chr5_4:46751632-46751651 Msa0854320:intron 60.0%
GGGGGAATATGGGCTCCTAG+GGG - chr5_4:46751633-46751652 Msa0854320:intron 60.0%
GGGGAATATGGGCTCCTAGG+GGG - chr5_4:46751634-46751653 Msa0854320:intron 60.0%
GGGTCCAATGATGCCGCACC+TGG - chr5_4:46748658-46748677 Msa0854320:intron 65.0%
!! GATGCCGCACCTGGTCTTGG+GGG - chr5_4:46748667-46748686 Msa0854320:intron 65.0%
TCATTGGAGAGCCCGCTGCG+AGG - chr5_4:46756828-46756847 Msa0854320:intron 65.0%
CATTGGAGAGCCCGCTGCGA+GGG - chr5_4:46756829-46756848 Msa0854320:intron 65.0%
CCGACCCCCAAGACCAGGTG+CGG + chr5_4:46748674-46748693 None:intergenic 70.0%
!! CCGCACCTGGTCTTGGGGGT+CGG - chr5_4:46748671-46748690 Msa0854320:intron 70.0%
!! CGCACCTGGTCTTGGGGGTC+GGG - chr5_4:46748672-46748691 Msa0854320:intron 70.0%
!! GCACCTGGTCTTGGGGGTCG+GGG - chr5_4:46748673-46748692 Msa0854320:intron 70.0%
GGACCCCGACCCCCAAGACC+AGG + chr5_4:46748679-46748698 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46747504 46757049 46747504 ID=Msa0854320;Name=Msa0854320
chr5_4 mRNA 46747504 46757049 46747504 ID=Msa0854320-mRNA-1;Parent=Msa0854320;Name=Msa0854320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=59|1|1|1|0.75|0.6|5|193|227
chr5_4 exon 46747504 46748026 46747504 ID=Msa0854320-mRNA-1:exon:14804;Parent=Msa0854320-mRNA-1
chr5_4 exon 46748306 46748328 46748306 ID=Msa0854320-mRNA-1:exon:14803;Parent=Msa0854320-mRNA-1
chr5_4 exon 46748694 46748882 46748694 ID=Msa0854320-mRNA-1:exon:14802;Parent=Msa0854320-mRNA-1
chr5_4 exon 46748959 46749085 46748959 ID=Msa0854320-mRNA-1:exon:14801;Parent=Msa0854320-mRNA-1
chr5_4 exon 46756976 46757049 46756976 ID=Msa0854320-mRNA-1:exon:14800;Parent=Msa0854320-mRNA-1
chr5_4 five_prime_UTR 46756991 46757049 46756991 ID=Msa0854320-mRNA-1:five_prime_utr;Parent=Msa0854320-mRNA-1
chr5_4 CDS 46756976 46756990 46756976 ID=Msa0854320-mRNA-1:cds;Parent=Msa0854320-mRNA-1
chr5_4 CDS 46748959 46749085 46748959 ID=Msa0854320-mRNA-1:cds;Parent=Msa0854320-mRNA-1
chr5_4 CDS 46748694 46748882 46748694 ID=Msa0854320-mRNA-1:cds;Parent=Msa0854320-mRNA-1
chr5_4 CDS 46748306 46748328 46748306 ID=Msa0854320-mRNA-1:cds;Parent=Msa0854320-mRNA-1
chr5_4 CDS 46747697 46748026 46747697 ID=Msa0854320-mRNA-1:cds;Parent=Msa0854320-mRNA-1
chr5_4 three_prime_UTR 46747504 46747696 46747504 ID=Msa0854320-mRNA-1:three_prime_utr;Parent=Msa0854320-mRNA-1
Gene Sequence

>Msa0854320

ATGAGCATGATCACAAAACGGATTACTCCTAAAAAACCACTAAACAAGTTGATAAACATAATGGCACGTGAACCTGAAGTATCTTCTAAGATGAAGAATAATTTACCTGAAGAAGACGAACTCTTGGATGAGCATGATCACAAGACTGTCTTGAATGTCAACTCAAAGAAGCTCAAGACGAATGATGGAAACAAAGGAATTGAAACAAGGAAATCACCAATTGGACCCAAAGCCTCATTCCAAGATGATGATCCTTGGTATGATCATGATCATGATAAGTGTATTGCAGAACAATTGAGACTCGACTTTGATGCTCCGATACCAGCGTATTATGCCAAATATTTTTCCGATCAGGTTCCGCAATCCCCAGACGAACCGTTCATTTTGTCAGGTTCAGAATTAGACAGATACTTTCCATTCCATACCCCTCCTCGTGAAGTAACTCCATTATCAGAGCAATATCAGCTCCTAACTAATGACGCTCTATTTTTACCTTCTCGTAGAGACCTAACGGATCTTGGGTCCAATGATGATCTTGGGGATCAGGGTCCAATGACAAGTTCCAAGAGAAAGAAATTGCTGGATGAATTTTACAAAGAGGCTGAGATTGAGATGGAACTGGTCTCTGATCAGTACAAATCCATGGAAGAGAAATTCATTGGAGAGCCCGCTGCGAGGGTATGA

Protein sequence

>Msa0854320

MSMITKRITPKKPLNKLINIMAREPEVSSKMKNNLPEEDELLDEHDHKTVLNVNSKKLKTNDGNKGIETRKSPIGPKASFQDDDPWYDHDHDKCIAEQLRLDFDAPIPAYYAKYFSDQVPQSPDEPFILSGSELDRYFPFHTPPREVTPLSEQYQLLTNDALFLPSRRDLTDLGSNDDLGDQGPMTSSKRKKLLDEFYKEAEIEMELVSDQYKSMEEKFIGEPAARV*