AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644660 MtrunA17_Chr4g0037701 98.734 158 2 0 1 158 1 158 3.77e-115 331
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644660 AT1G50300.1 66.443 149 41 2 10 158 5 144 3.07e-63 199

Find 236 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTAAATCCTTAAAT+TGG 0.134015 4_3:+48739946 Msa0644660:three_prime_UTR
GTCAAAGATTTGCACCTTAT+TGG 0.174201 4_3:-48736720 None:intergenic
TTGAAAGAGAACAAAATTTC+TGG 0.179098 4_3:-48734496 None:intergenic
TCAGTTGACCTTATGTAAAT+TGG 0.185736 4_3:-48736679 None:intergenic
AATATGTTGGCTGAATATTT+TGG 0.202918 4_3:+48735198 Msa0644660:CDS
GGAAAATTTGCTCCTTCTAA+TGG 0.205983 4_3:+48735135 Msa0644660:CDS
GGCCGTGGCAGGGGACGTTC+TGG 0.209011 4_3:+48736000 Msa0644660:three_prime_UTR
GTCACGCGCTTCTTCGATTC+TGG 0.222153 4_3:+48734414 Msa0644660:five_prime_UTR
GCTGGTGCTTCTGGCGTTGC+AGG 0.246144 4_3:+48735970 Msa0644660:three_prime_UTR
GCACGCCCTGCTGGTGCTTC+TGG 0.253618 4_3:+48735961 Msa0644660:three_prime_UTR
ATGCAAAAGGGGACGCAATT+TGG 0.254014 4_3:-48736534 None:intergenic
GCACGAGTGCTTCCTGGTTC+AGG 0.255195 4_3:+48738999 Msa0644660:three_prime_UTR
CCAGTTGTTGTAGCAAATTT+AGG 0.257837 4_3:+48736854 Msa0644660:three_prime_UTR
GTTACAATTTACTGCCAATA+AGG 0.267662 4_3:+48736706 Msa0644660:three_prime_UTR
GGATATCAATCCCCAATTTA+AGG 0.271618 4_3:-48739958 None:intergenic
CAGGAGGAGGTGGCCGTGGC+AGG 0.278126 4_3:+48735989 Msa0644660:three_prime_UTR
TTGAATTAAATCCTTAAATT+GGG 0.283171 4_3:+48739947 Msa0644660:three_prime_UTR
GGTGCAACTGCAGGGCTATT+TGG 0.284772 4_3:+48736054 Msa0644660:three_prime_UTR
TGGTTCAGGGCGTGCTGGTT+GGG 0.289046 4_3:+48739013 Msa0644660:three_prime_UTR
TCAATTATTATACAGGAAAA+TGG 0.293895 4_3:-48734470 None:intergenic
CTCTTGTTGCCATGGTTTGC+TGG 0.299452 4_3:-48735756 None:intergenic
CGTTGCCCAGTTTCATCAAT+TGG 0.299725 4_3:+48736252 Msa0644660:three_prime_UTR
ATCCATAGGCTTATTCAATT+AGG 0.300554 4_3:+48734757 Msa0644660:five_prime_UTR
GATTCCATGGCAAGCATTCC+TGG 0.304742 4_3:+48735114 Msa0644660:exon
GTTAACCTCTCCCCGGGTTC+TGG 0.309957 4_3:+48736749 Msa0644660:three_prime_UTR
AGAGATCGAGACAGGGATTA+TGG 0.310355 4_3:+48739814 Msa0644660:three_prime_UTR
ATGTCTGCAACTTGCCTTAT+GGG 0.313152 4_3:+48735166 Msa0644660:CDS
TGCAAGTTGGCTATATGATA+TGG 0.314345 4_3:+48736913 Msa0644660:three_prime_UTR
CAATTGCAGATCGCGGAAAA+TGG 0.317115 4_3:-48734951 None:intergenic
TGGAACCATTGGAGTTATAA+AGG 0.318896 4_3:+48735218 Msa0644660:CDS
GGTGAGCTGTATGATGAATT+TGG 0.319502 4_3:+48738930 Msa0644660:three_prime_UTR
AGTAACCCAATTGATGAAAC+TGG 0.324820 4_3:-48736258 None:intergenic
GCTATATGATATGGGGCTTA+TGG 0.325758 4_3:+48736922 Msa0644660:three_prime_UTR
CCTAAATTTGCTACAACAAC+TGG 0.327056 4_3:-48736854 None:intergenic
TATGTCTGCAACTTGCCTTA+TGG 0.328564 4_3:+48735165 Msa0644660:CDS
CTGGTTCAGGGCGTGCTGGT+TGG 0.328885 4_3:+48739012 Msa0644660:three_prime_UTR
CTGGAACTCAATTATTATAC+AGG 0.330412 4_3:-48734477 None:intergenic
AGTGATGTCGATGGTGTTAA+TGG 0.330703 4_3:+48735707 Msa0644660:CDS
GGACGTTCTGGGCCAGATGC+AGG 0.337930 4_3:+48736012 Msa0644660:three_prime_UTR
TGTAACAACACAAATATCTT+AGG 0.340119 4_3:-48740015 None:intergenic
CATATCACAGACCTTGTATT+CGG 0.343657 4_3:-48735794 None:intergenic
GAAAATTTGCTCCTTCTAAT+GGG 0.344168 4_3:+48735136 Msa0644660:CDS
TGTGGAAGTGCACGCCCTGC+TGG 0.347172 4_3:+48735952 Msa0644660:three_prime_UTR
TAAACGGTATGCTAAGAAAA+TGG 0.352458 4_3:+48740178 Msa0644660:three_prime_UTR
CGTCCAGCTGGTGCAACTGC+AGG 0.354707 4_3:+48736045 Msa0644660:three_prime_UTR
AGTTTCAGATTGCTGTGTTT+TGG 0.356059 4_3:-48738976 None:intergenic
GTACAGGGAAACCTAAAATA+TGG 0.363199 4_3:+48735459 Msa0644660:CDS
CTGCTATTGCAGTATATGTT+TGG 0.371572 4_3:-48735640 None:intergenic
CCATGCATTCATCGCATTGC+AGG 0.372530 4_3:-48739979 None:intergenic
GCATTCTGATGTCTTGACTA+TGG 0.375960 4_3:+48739887 Msa0644660:three_prime_UTR
GAAACTGCACGAGTGCTTCC+TGG 0.382916 4_3:+48738993 Msa0644660:three_prime_UTR
GGCTATTTGGTCCCAATGAC+TGG 0.387107 4_3:+48736067 Msa0644660:three_prime_UTR
CACGAGTGCTTCCTGGTTCA+GGG 0.389853 4_3:+48739000 Msa0644660:three_prime_UTR
ACGTTCTGGGCCAGATGCAG+GGG 0.392528 4_3:+48736014 Msa0644660:three_prime_UTR
GGAGGAGGTGGCCGTGGCAG+GGG 0.394233 4_3:+48735991 Msa0644660:three_prime_UTR
ATTATAATACTCAATGCAAA+AGG 0.407823 4_3:-48736547 None:intergenic
GCCGTGGCAGGGGACGTTCT+GGG 0.411401 4_3:+48736001 Msa0644660:three_prime_UTR
GACGTTCTGGGCCAGATGCA+GGG 0.412571 4_3:+48736013 Msa0644660:three_prime_UTR
TGGCACGGAATTTCTTCTTA+AGG 0.415207 4_3:-48738956 None:intergenic
GATTGTACACCGTTGGAACT+TGG 0.417476 4_3:+48736882 Msa0644660:three_prime_UTR
ATAGGTGTGGCAATATCAAT+TGG 0.418424 4_3:+48737146 Msa0644660:intron
AGGTATCAATTAAAGAAAAC+AGG 0.421248 4_3:-48736440 None:intergenic
GTCGAAATAGAGAGAGGGAC+AGG 0.428254 4_3:+48739788 Msa0644660:three_prime_UTR
GGTTGGGAGGTTGAGGATCT+AGG 0.428724 4_3:+48739029 Msa0644660:three_prime_UTR
GCGAACACTACATAACTGTT+TGG 0.428740 4_3:-48734848 None:intergenic
ACGTCAGTACCAGCAACAAC+CGG 0.429856 4_3:-48735665 None:intergenic
TGGCCTTTCCAATTTACATA+AGG 0.432689 4_3:+48736671 Msa0644660:three_prime_UTR
CTTCCTGGTTCAGGGCGTGC+TGG 0.434352 4_3:+48739008 Msa0644660:three_prime_UTR
AGGAGGAGGTGGCCGTGGCA+GGG 0.441158 4_3:+48735990 Msa0644660:three_prime_UTR
GCGTGCTGGTTGGGAGGTTG+AGG 0.442475 4_3:+48739022 Msa0644660:three_prime_UTR
GCAAGTTGGCTATATGATAT+GGG 0.443144 4_3:+48736914 Msa0644660:three_prime_UTR
ATAGCAGACCCGGTTGTTGC+TGG 0.443186 4_3:+48735656 Msa0644660:CDS
CAATCGCCCTCTTGTTGCCA+TGG 0.443269 4_3:-48735764 None:intergenic
ACAGGGGAAGAGATCGAGAC+AGG 0.444481 4_3:+48739806 Msa0644660:three_prime_UTR
AGCTATAGCCCCTCTATAAC+CGG 0.445285 4_3:-48734898 None:intergenic
GCGGAAGCTGAAAATATCAT+AGG 0.449060 4_3:-48734618 None:intergenic
TAGATGATGAAATTATAGAT+TGG 0.449179 4_3:-48736578 None:intergenic
ACATCACTTTCAGTTTCCTC+TGG 0.451741 4_3:-48735692 None:intergenic
ATGTCAAATACCGGTTATAG+AGG 0.451783 4_3:+48734888 Msa0644660:five_prime_UTR
TATTATGTTGGACGTAGTGC+TGG 0.453266 4_3:+48736298 Msa0644660:three_prime_UTR
CTTTGTTGTTAACCTCTCCC+CGG 0.455729 4_3:+48736742 Msa0644660:three_prime_UTR
CGGGCACGAGAGTGCCCGTC+TGG 0.460452 4_3:+48734099 Msa0644660:five_prime_UTR
GCAACGCCAGAAGCACCAGC+AGG 0.461187 4_3:-48735967 None:intergenic
GGACTAAGATTGTACACCGT+TGG 0.462937 4_3:+48736875 Msa0644660:three_prime_UTR
GTTGCCCAGTTTCATCAATT+GGG 0.464874 4_3:+48736253 Msa0644660:three_prime_UTR
GCTTCTGGCGTTGCAGGAGG+AGG 0.468468 4_3:+48735976 Msa0644660:three_prime_UTR
AGCCCTGCAGTTGCACCAGC+TGG 0.469244 4_3:-48736048 None:intergenic
GACAAAAGACCACAGGTAAA+CGG 0.469516 4_3:+48740162 Msa0644660:three_prime_UTR
GTTCATTCGTCTCTTTGTCA+TGG 0.472566 4_3:-48735487 None:intergenic
TTTAATATCGGTGTCTACTT+CGG 0.473694 4_3:-48739849 None:intergenic
GTTGCAGGAGGAGGTGGCCG+TGG 0.474248 4_3:+48735985 Msa0644660:three_prime_UTR
AGAAGAAATTAGCGAGGAGG+GGG 0.474469 4_3:+48734301 Msa0644660:five_prime_UTR
CAACCAGCACGCCCTGAACC+AGG 0.475347 4_3:-48739011 None:intergenic
AACCTAATTGAATAAGCCTA+TGG 0.477438 4_3:-48734759 None:intergenic
ACGTTGCAAAGTGCAAAATC+AGG 0.479095 4_3:-48736463 None:intergenic
GTCACAGTAGCATCTCCCTT+TGG 0.480691 4_3:-48735509 None:intergenic
GAGGACAAGGACCAGAACCC+GGG 0.480710 4_3:-48736760 None:intergenic
TCTGGCGTTGCAGGAGGAGG+TGG 0.481544 4_3:+48735979 Msa0644660:three_prime_UTR
CATGGCAACAAGAGGGCGAT+TGG 0.484158 4_3:+48735765 Msa0644660:CDS
CATTGGACAAGGCCAGTCAT+TGG 0.485145 4_3:-48736079 None:intergenic
AGATGATGAAATTATAGATT+GGG 0.487422 4_3:-48736577 None:intergenic
CAGGGATTATGGACGAGAAC+GGG 0.487630 4_3:+48739825 Msa0644660:three_prime_UTR
TTGCAGAAAGATAAACGTAC+AGG 0.490948 4_3:+48735443 Msa0644660:intron
ACACCACCCTCGTTGTGCCC+AGG 0.493132 4_3:-48737208 None:intergenic
ATTGGACAAGGCCAGTCATT+GGG 0.494257 4_3:-48736078 None:intergenic
ATGGAAGGAAGAAAAGAAGA+GGG 0.494775 4_3:-48734451 None:intergenic
TTCATGATATTGAGATTCCA+TGG 0.494827 4_3:+48735101 Msa0644660:exon
AGGGATAAAATAAAATGAAA+AGG 0.495205 4_3:+48734255 Msa0644660:intron
ATTTGCAATACAAACAAGCC+TGG 0.495239 4_3:+48737190 Msa0644660:three_prime_UTR
ATATTATCGTCGGTCCCATA+AGG 0.496822 4_3:-48735180 None:intergenic
TTCTTATGATTTGCATCCAT+AGG 0.499602 4_3:+48734743 Msa0644660:five_prime_UTR
GAGTCAAGGGACCGTTATGA+TGG 0.500996 4_3:+48739724 Msa0644660:three_prime_UTR
TAGTACAAAATGTCAAATAC+CGG 0.502030 4_3:+48734879 Msa0644660:five_prime_UTR
GAGATTTGTTAACTTTGCTA+AGG 0.502048 4_3:+48736495 Msa0644660:three_prime_UTR
CTTGTTGTGTTATATTATGT+TGG 0.502684 4_3:+48736286 Msa0644660:three_prime_UTR
AGACAGAGGAAGAGAGTCAA+GGG 0.502977 4_3:+48739711 Msa0644660:three_prime_UTR
ATGAAATTATAGATTGGGTC+GGG 0.503423 4_3:-48736572 None:intergenic
ATTGGATGTGCCCGAATACA+AGG 0.505444 4_3:+48735783 Msa0644660:CDS
TTAAACAGAGGAGGGCGAGC+TGG 0.505797 4_3:+48738763 Msa0644660:intron
AAAGAAGAAATTAGCGAGGA+GGG 0.507095 4_3:+48734299 Msa0644660:five_prime_UTR
ACATAGATAGACCCATTAGA+AGG 0.508080 4_3:-48735147 None:intergenic
ATATCACAGACCTTGTATTC+GGG 0.510417 4_3:-48735793 None:intergenic
TGCAAATTATGCAATCGAAA+AGG 0.511284 4_3:-48734552 None:intergenic
GCCCAGAACGTCCCCTGCCA+CGG 0.511393 4_3:-48736002 None:intergenic
AAGAAGAAATTAGCGAGGAG+GGG 0.514944 4_3:+48734300 Msa0644660:five_prime_UTR
AATATCTTAGGTTATACAAA+TGG 0.516641 4_3:-48740003 None:intergenic
ATCTTTACAAATACCACACC+TGG 0.516662 4_3:-48740209 None:intergenic
ATTGTACACCGTTGGAACTT+GGG 0.518841 4_3:+48736883 Msa0644660:three_prime_UTR
TATCATATTCAATTTACTTG+TGG 0.520555 4_3:-48736333 None:intergenic
TTATAATACTCAATGCAAAA+GGG 0.522326 4_3:-48736546 None:intergenic
GTCCAGCTGGTGCAACTGCA+GGG 0.522936 4_3:+48736046 Msa0644660:three_prime_UTR
AGATGCTACTGTGACATATG+AGG 0.528491 4_3:+48735517 Msa0644660:CDS
GGCACAACGAGGGTGGTGTA+AGG 0.528607 4_3:+48737212 Msa0644660:three_prime_UTR
TGACCTTATGTAAATTGGAA+AGG 0.531504 4_3:-48736674 None:intergenic
TGTCAAATACCGGTTATAGA+GGG 0.531794 4_3:+48734889 Msa0644660:five_prime_UTR
ATCAGACAACGGAAAGAATG+TGG 0.537258 4_3:-48736123 None:intergenic
TCGAAATAGAGAGAGGGACA+GGG 0.538004 4_3:+48739789 Msa0644660:three_prime_UTR
TGAATTAAATCCTTAAATTG+GGG 0.539199 4_3:+48739948 Msa0644660:three_prime_UTR
GTGTTGTTACAGTATTTCCA+TGG 0.541230 4_3:+48740027 Msa0644660:three_prime_UTR
TTCAGGGCGTGCTGGTTGGG+AGG 0.541272 4_3:+48739016 Msa0644660:three_prime_UTR
CTCAAATAGAAATTTGTCCA+TGG 0.541510 4_3:-48740044 None:intergenic
GTGATTTATCGCTCCGTCTG+CGG 0.545831 4_3:-48734327 None:intergenic
TTTGTTGTTAACCTCTCCCC+GGG 0.546008 4_3:+48736743 Msa0644660:three_prime_UTR
TTACAAAGAGCTTGATGAAG+AGG 0.552917 4_3:+48738789 Msa0644660:three_prime_UTR
TAGGTGTGGCAATATCAATT+GGG 0.553457 4_3:+48737147 Msa0644660:intron
AAAGAGAAGTTCAGTAGATG+AGG 0.554170 4_3:-48736779 None:intergenic
CAGGGGAAGAGATCGAGACA+GGG 0.554781 4_3:+48739807 Msa0644660:three_prime_UTR
GTCGATGGTGTTAATGGAAG+AGG 0.554855 4_3:+48735713 Msa0644660:CDS
CCATACCTTTATAACTCCAA+TGG 0.555137 4_3:-48735223 None:intergenic
GGTGCTTCTGGCGTTGCAGG+AGG 0.557530 4_3:+48735973 Msa0644660:three_prime_UTR
CAAGGTCTGTGATATGAGAT+TGG 0.557604 4_3:+48735801 Msa0644660:exon
TTCTCTGCTCTCCATCATAA+CGG 0.558553 4_3:-48739735 None:intergenic
AAAGAGACGAATGAACCAAA+GGG 0.558771 4_3:+48735494 Msa0644660:CDS
CTTGGGAGTGTAGTGCAAGT+TGG 0.559616 4_3:+48736900 Msa0644660:three_prime_UTR
AAGGACCAGAACCCGGGGAG+AGG 0.560784 4_3:-48736754 None:intergenic
CTGCAGTTGCACCAGCTGGA+CGG 0.561682 4_3:-48736044 None:intergenic
GGTGTTAATGGAAGAGGCAG+AGG 0.562740 4_3:+48735719 Msa0644660:CDS
AGATCTATCTATCTATTCAT+CGG 0.570434 4_3:+48734350 Msa0644660:five_prime_UTR
CTGCCGTGGCTGCTGTTGAG+TGG 0.571241 4_3:+48735549 Msa0644660:CDS
TGAGGACAAGGACCAGAACC+CGG 0.573254 4_3:-48736761 None:intergenic
GGTAGAAAGAGCGGACAGGC+GGG 0.573485 4_3:+48734080 Msa0644660:five_prime_UTR
GCGCGGTAGAAAGAGCGGAC+AGG 0.575626 4_3:+48734076 Msa0644660:five_prime_UTR
CGGTAGAAAGAGCGGACAGG+CGG 0.576333 4_3:+48734079 Msa0644660:five_prime_UTR
TGGAAGGAAGAAAAGAAGAG+GGG 0.577439 4_3:-48734450 None:intergenic
TCAGACAACGGAAAGAATGT+GGG 0.578344 4_3:-48736122 None:intergenic
AATGGAAGGAAGAAAAGAAG+AGG 0.578356 4_3:-48734452 None:intergenic
CATACTCTTGTGAATGAACA+TGG 0.578448 4_3:+48736396 Msa0644660:three_prime_UTR
ATTTCATACTAGCGTCCAGA+CGG 0.579005 4_3:-48734114 None:intergenic
CGAAATAGAGAGAGGGACAG+GGG 0.581694 4_3:+48739790 Msa0644660:three_prime_UTR
AAGTTCAGTAGATGAGGACA+AGG 0.585904 4_3:-48736773 None:intergenic
GAGACAGAGGAAGAGAGTCA+AGG 0.587406 4_3:+48739710 Msa0644660:three_prime_UTR
GATGAAATTATAGATTGGGT+CGG 0.590550 4_3:-48736573 None:intergenic
TTGAAGAAACTAAACGTCGC+AGG 0.591162 4_3:+48738815 Msa0644660:three_prime_UTR
ACAGGGATTATGGACGAGAA+CGG 0.593289 4_3:+48739824 Msa0644660:three_prime_UTR
AATGTGACAAAATCGTACAT+TGG 0.593575 4_3:-48736096 None:intergenic
AACAGAGGAGGGCGAGCTGG+AGG 0.593908 4_3:+48738766 Msa0644660:intron
CCTGCAATGCGATGAATGCA+TGG 0.594187 4_3:+48739979 Msa0644660:three_prime_UTR
TTCAGCCAACATATTATCGT+CGG 0.597239 4_3:-48735190 None:intergenic
TTTCATACTAGCGTCCAGAC+GGG 0.598630 4_3:-48734113 None:intergenic
AAACCACTCAACAGCAGCCA+CGG 0.598977 4_3:-48735552 None:intergenic
CAAAGAGACGAATGAACCAA+AGG 0.600702 4_3:+48735493 Msa0644660:CDS
AAGCCTGGGCACAACGAGGG+TGG 0.605160 4_3:+48737205 Msa0644660:three_prime_UTR
TTTGCAATACAAACAAGCCT+GGG 0.606882 4_3:+48737191 Msa0644660:three_prime_UTR
CGTTCTGGGCCAGATGCAGG+GGG 0.607334 4_3:+48736015 Msa0644660:three_prime_UTR
ATGAAAAGAAGAAATTAGCG+AGG 0.607339 4_3:+48734295 Msa0644660:five_prime_UTR
CTTAGCATACCGTTTACCTG+TGG 0.608590 4_3:-48740171 None:intergenic
GTCAAATACCGGTTATAGAG+GGG 0.612149 4_3:+48734890 Msa0644660:five_prime_UTR
TGGGACCGACGATAATATGT+TGG 0.612755 4_3:+48735185 Msa0644660:CDS
CAACGCCAGAAGCACCAGCA+GGG 0.613406 4_3:-48735966 None:intergenic
CGTCAGTACCAGCAACAACC+GGG 0.613629 4_3:-48735664 None:intergenic
CAGCAAACCATGGCAACAAG+AGG 0.614216 4_3:+48735757 Msa0644660:CDS
ACAGAGAGCATAACGAGGAG+AGG 0.615331 4_3:+48739758 Msa0644660:three_prime_UTR
CACAAGGACAAAAGAGACAG+AGG 0.624390 4_3:-48736802 None:intergenic
GTAACCCAATTGATGAAACT+GGG 0.626079 4_3:-48736257 None:intergenic
TTGCTTGAGTGCAAATCTAG+TGG 0.627162 4_3:+48736651 Msa0644660:three_prime_UTR
GGAAGCAATCATCATGTGAG+AGG 0.629938 4_3:+48736628 Msa0644660:three_prime_UTR
CGGGGTGCGTGTAATCGCTG+TGG 0.632515 4_3:+48735934 Msa0644660:three_prime_UTR
AAAAGAAGAAATTAGCGAGG+AGG 0.634061 4_3:+48734298 Msa0644660:five_prime_UTR
ACAGCAGCCACGGCAGCATG+TGG 0.634443 4_3:-48735542 None:intergenic
GTTGTTGCTGGTACTGACGT+CGG 0.634611 4_3:+48735668 Msa0644660:CDS
CAAGTTGGCTATATGATATG+GGG 0.634808 4_3:+48736915 Msa0644660:three_prime_UTR
AGCAAACCATGGCAACAAGA+GGG 0.635048 4_3:+48735758 Msa0644660:CDS
TATAATACTCAATGCAAAAG+GGG 0.635294 4_3:-48736545 None:intergenic
ATGTGTTACACGAGTTAGCG+CGG 0.636155 4_3:+48734059 Msa0644660:five_prime_UTR
ATCAACTGCCACAACCCACA+AGG 0.638214 4_3:-48736818 None:intergenic
TGAGGATCCACATGCTGCCG+TGG 0.639570 4_3:+48735535 Msa0644660:CDS
TGGTACTGACGTCGGACCAG+AGG 0.639768 4_3:+48735676 Msa0644660:CDS
AAAGCAGTCGAAATAGAGAG+AGG 0.640490 4_3:+48739782 Msa0644660:three_prime_UTR
AAGAAACTAAACGTCGCAGG+CGG 0.641204 4_3:+48738818 Msa0644660:three_prime_UTR
TTTCTGAAATAATAGTAACC+CGG 0.642524 4_3:+48740132 Msa0644660:three_prime_UTR
TTATTATACAGGAAAATGGA+AGG 0.643130 4_3:-48734466 None:intergenic
TGCAGAAAGATAAACGTACA+GGG 0.643687 4_3:+48735444 Msa0644660:intron
AAGCAGTCGAAATAGAGAGA+GGG 0.643715 4_3:+48739783 Msa0644660:three_prime_UTR
TGGAATTGACAAAAGACCAC+AGG 0.645001 4_3:+48740155 Msa0644660:three_prime_UTR
TACAATTGGAGTTTATATAG+CGG 0.645043 4_3:+48735598 Msa0644660:CDS
CTGAAATAATAGTAACCCGG+TGG 0.649592 4_3:+48740135 Msa0644660:three_prime_UTR
AACAAGCCTGGGCACAACGA+GGG 0.649708 4_3:+48737202 Msa0644660:three_prime_UTR
AGAATCGAAGAAGCGCGTGA+CGG 0.651864 4_3:-48734412 None:intergenic
TTGATGCTTCCAGCAAACCA+TGG 0.653109 4_3:+48735747 Msa0644660:CDS
ACTACACTCCCAAGTTCCAA+CGG 0.654200 4_3:-48736891 None:intergenic
ATATACTGCAATAGCAGACC+CGG 0.656715 4_3:+48735646 Msa0644660:CDS
AGGACAAGGACCAGAACCCG+GGG 0.657044 4_3:-48736759 None:intergenic
ACGGTATGCTAAGAAAATGG+TGG 0.659732 4_3:+48740181 Msa0644660:three_prime_UTR
GAGAAACAGAGAGCATAACG+AGG 0.665827 4_3:+48739753 Msa0644660:three_prime_UTR
ACAAAATCGTACATTGGACA+AGG 0.668648 4_3:-48736090 None:intergenic
CAGACAACGGAAAGAATGTG+GGG 0.668869 4_3:-48736121 None:intergenic
GAGTTCAAAATTGAATAATG+CGG 0.670947 4_3:-48734637 None:intergenic
GAGTTCAAAATTGAATAATG+CGG 0.670947 4_3:-48734685 None:intergenic
AGTATAAATAAATCAGACAA+CGG 0.673430 4_3:-48736134 None:intergenic
AGTTAGCGCGGTAGAAAGAG+CGG 0.678332 4_3:+48734071 Msa0644660:five_prime_UTR
TTGCAAAGTGCAAAATCAGG+AGG 0.679026 4_3:-48736460 None:intergenic
GCAATATCAATTGGGCAAAG+CGG 0.687100 4_3:+48737155 Msa0644660:three_prime_UTR
AAAAGCAAGACACTTGACAT+CGG 0.697318 4_3:-48734980 None:intergenic
AAACAAGCCTGGGCACAACG+AGG 0.703032 4_3:+48737201 Msa0644660:three_prime_UTR
GTATTGTCAATTGCAGATCG+CGG 0.713294 4_3:-48734958 None:intergenic
GAAACTGAAAGTGATGTCGA+TGG 0.721373 4_3:+48735698 Msa0644660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCAAAAAAAAAAAAAAAAA+AGG + chr4_3:48734221-48734240 Msa0644660:intron 10.0%
!!! TCCTTTTTTTTTTTTTTTTT+TGG - chr4_3:48734225-48734244 None:intergenic 10.0%
!! AATACATGTTATATATAAAT+TGG + chr4_3:48738869-48738888 Msa0644660:intron 10.0%
!! AAAAATAACAAAAAGATAAT+AGG - chr4_3:48739265-48739284 None:intergenic 10.0%
!!! ATTGAGTATTTATTTTACTT+AGG - chr4_3:48734178-48734197 None:intergenic 15.0%
!! AAAAAAAAAAAAAAGGAGAA+TGG + chr4_3:48734228-48734247 Msa0644660:intron 15.0%
!! TTAAAAATAAATGAAAACCA+AGG + chr4_3:48737337-48737356 Msa0644660:intron 15.0%
!! AATCATAGTAATAAGTAATA+TGG + chr4_3:48738028-48738047 Msa0644660:intron 15.0%
!!! TATATTTTAGTATTTCTCTT+TGG - chr4_3:48738093-48738112 None:intergenic 15.0%
!! ATGTATTTATGTAAAATGAA+GGG - chr4_3:48738665-48738684 None:intergenic 15.0%
!! TATGTATTTATGTAAAATGA+AGG - chr4_3:48738666-48738685 None:intergenic 15.0%
!! TTTACATAAATACATACATA+CGG + chr4_3:48738670-48738689 Msa0644660:intron 15.0%
!! ATTTATTAAGAAAATGTGAA+TGG - chr4_3:48738702-48738721 None:intergenic 15.0%
!! TTTGAATTAAATCCTTAAAT+TGG + chr4_3:48739946-48739965 Msa0644660:three_prime_UTR 15.0%
!! TTGAATTAAATCCTTAAATT+GGG + chr4_3:48739947-48739966 Msa0644660:three_prime_UTR 15.0%
!!! TTCATTTTATTTTATCCCTA+CGG - chr4_3:48734254-48734273 None:intergenic 20.0%
!! AGGGATAAAATAAAATGAAA+AGG + chr4_3:48734255-48734274 Msa0644660:intron 20.0%
!! TCAATTATTATACAGGAAAA+TGG - chr4_3:48734473-48734492 None:intergenic 20.0%
!! ATAATATGTGATTACTTGAA+TGG + chr4_3:48735265-48735284 Msa0644660:intron 20.0%
!!! TTTAACAACAAAGATTTTCA+TGG + chr4_3:48735572-48735591 Msa0644660:CDS 20.0%
!! AGTATAAATAAATCAGACAA+CGG - chr4_3:48736137-48736156 None:intergenic 20.0%
!! TATCATATTCAATTTACTTG+TGG - chr4_3:48736336-48736355 None:intergenic 20.0%
!! TTATAATACTCAATGCAAAA+GGG - chr4_3:48736549-48736568 None:intergenic 20.0%
!! ATTATAATACTCAATGCAAA+AGG - chr4_3:48736550-48736569 None:intergenic 20.0%
!! AGATGATGAAATTATAGATT+GGG - chr4_3:48736580-48736599 None:intergenic 20.0%
!! TAGATGATGAAATTATAGAT+TGG - chr4_3:48736581-48736600 None:intergenic 20.0%
!!! TAGTTCTCTATGAATTTTAA+AGG + chr4_3:48736607-48736626 Msa0644660:three_prime_UTR 20.0%
!!! TCTCTATTTATTTAGGATTA+GGG - chr4_3:48737996-48738015 None:intergenic 20.0%
!!! TTCTCTATTTATTTAGGATT+AGG - chr4_3:48737997-48738016 None:intergenic 20.0%
!!! CCTTATTTCTCTATTTATTT+AGG - chr4_3:48738003-48738022 None:intergenic 20.0%
!! CCTAAATAAATAGAGAAATA+AGG + chr4_3:48738000-48738019 Msa0644660:intron 20.0%
!!! TCAATAACTGAAAAAGTATA+TGG - chr4_3:48738586-48738605 None:intergenic 20.0%
!! TTACATAAATACATACATAC+GGG + chr4_3:48738671-48738690 Msa0644660:intron 20.0%
!! ATTGTAATCTAACAATGTTA+GGG - chr4_3:48739185-48739204 None:intergenic 20.0%
!! AATTGTAATCTAACAATGTT+AGG - chr4_3:48739186-48739205 None:intergenic 20.0%
!!! ACAATTTTGAGTTATCATTA+TGG + chr4_3:48739200-48739219 Msa0644660:intron 20.0%
!! TTTGTAAATTGGATATTTAC+AGG - chr4_3:48739552-48739571 None:intergenic 20.0%
!!! TTCTGTAACATTTTGTAAAT+TGG - chr4_3:48739563-48739582 None:intergenic 20.0%
!!! TCTACTGCTATTTTTAATAT+CGG - chr4_3:48739864-48739883 None:intergenic 20.0%
!! TGAATTAAATCCTTAAATTG+GGG + chr4_3:48739948-48739967 Msa0644660:three_prime_UTR 20.0%
!! AATATCTTAGGTTATACAAA+TGG - chr4_3:48740006-48740025 None:intergenic 20.0%
!!! TACTTTTTCTTGATGTATCT+TGG - chr4_3:48734007-48734026 None:intergenic 25.0%
!!! ATGTTTTTCAACATCAATGT+TGG - chr4_3:48734032-48734051 None:intergenic 25.0%
! AGATCTATCTATCTATTCAT+CGG + chr4_3:48734350-48734369 Msa0644660:five_prime_UTR 25.0%
! TTATTATACAGGAAAATGGA+AGG - chr4_3:48734469-48734488 None:intergenic 25.0%
! TTGAAAGAGAACAAAATTTC+TGG - chr4_3:48734499-48734518 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_3:48734640-48734659 None:intergenic 25.0%
! GAGTTCAAAATTGAATAATG+CGG - chr4_3:48734640-48734659 None:intergenic 25.0%
!! ATTAGGTTAGCATTTTCAAA+TGG + chr4_3:48734774-48734793 Msa0644660:five_prime_UTR 25.0%
! TAGTACAAAATGTCAAATAC+CGG + chr4_3:48734879-48734898 Msa0644660:five_prime_UTR 25.0%
!!! AATATGTTGGCTGAATATTT+TGG + chr4_3:48735198-48735217 Msa0644660:CDS 25.0%
! AAGTAATCACATATTATCGT+AGG - chr4_3:48735262-48735281 None:intergenic 25.0%
! ATAAACAGAACCACATAAAT+GGG - chr4_3:48735368-48735387 None:intergenic 25.0%
!! TCATGGTATAACCATATTTT+AGG - chr4_3:48735473-48735492 None:intergenic 25.0%
! TACAATTGGAGTTTATATAG+CGG + chr4_3:48735598-48735617 Msa0644660:CDS 25.0%
!! CTTGTTGTGTTATATTATGT+TGG + chr4_3:48736286-48736305 Msa0644660:three_prime_UTR 25.0%
! AGGTATCAATTAAAGAAAAC+AGG - chr4_3:48736443-48736462 None:intergenic 25.0%
! TATAATACTCAATGCAAAAG+GGG - chr4_3:48736548-48736567 None:intergenic 25.0%
!! TATCTTTTACTACCATAAAC+GGG - chr4_3:48737598-48737617 None:intergenic 25.0%
!! GTATCTTTTACTACCATAAA+CGG - chr4_3:48737599-48737618 None:intergenic 25.0%
!! GTAATACTTTTAATCCTTAG+AGG - chr4_3:48737763-48737782 None:intergenic 25.0%
! TACATTATGTTGATCTCAAA+TGG + chr4_3:48737780-48737799 Msa0644660:intron 25.0%
! ATCTCAATATTTGATATGTG+TGG + chr4_3:48737833-48737852 Msa0644660:intron 25.0%
! AGAAGATTTAATGTATGACA+TGG + chr4_3:48737861-48737880 Msa0644660:intron 25.0%
! ATTTAATGTATGACATGGTT+TGG + chr4_3:48737866-48737885 Msa0644660:intron 25.0%
! AAAAACCAACCTCTATATAT+AGG + chr4_3:48737960-48737979 Msa0644660:intron 25.0%
! AAAACCAACCTCTATATATA+GGG + chr4_3:48737961-48737980 Msa0644660:intron 25.0%
!! CTCTATTTATTTAGGATTAG+GGG - chr4_3:48737995-48738014 None:intergenic 25.0%
! TAGATGATTTAGGTATATTG+TGG - chr4_3:48738201-48738220 None:intergenic 25.0%
!! GTTTAGTCTTTAGATGATTT+AGG - chr4_3:48738211-48738230 None:intergenic 25.0%
! TATCGACCTTAATTTATTGT+TGG + chr4_3:48738347-48738366 Msa0644660:intron 25.0%
! ATCGACCTTAATTTATTGTT+GGG + chr4_3:48738348-48738367 Msa0644660:intron 25.0%
! AAAACCCCAACAATAAATTA+AGG - chr4_3:48738356-48738375 None:intergenic 25.0%
! TTGAAATTACTTTGCTAACT+TGG + chr4_3:48738728-48738747 Msa0644660:intron 25.0%
! TGAAATTACTTTGCTAACTT+GGG + chr4_3:48738729-48738748 Msa0644660:intron 25.0%
!! GTTACTTTCTTATTAAACAG+AGG + chr4_3:48738751-48738770 Msa0644660:intron 25.0%
!! TGTTATATATAAATTGGCTC+TGG + chr4_3:48738875-48738894 Msa0644660:intron 25.0%
!!! ATGATTTTTTTCTTACTGTC+AGG + chr4_3:48738902-48738921 Msa0644660:intron 25.0%
!! ACCATTTTCAAATACTTTCA+TGG + chr4_3:48739236-48739255 Msa0644660:intron 25.0%
!!! ACCATGAAAGTATTTGAAAA+TGG - chr4_3:48739240-48739259 None:intergenic 25.0%
!! TTTTATTAGTCGTTCCTTTT+CGG + chr4_3:48739282-48739301 Msa0644660:intron 25.0%
!!! TATGTTTTGAAATAGTATGC+AGG - chr4_3:48739352-48739371 None:intergenic 25.0%
! AGTATAATTTAGATTTGTGC+AGG - chr4_3:48739438-48739457 None:intergenic 25.0%
! TGCACAAATCTAAATTATAC+TGG + chr4_3:48739437-48739456 Msa0644660:intron 25.0%
! ACATGAAATTATGAATCAGT+TGG + chr4_3:48739614-48739633 Msa0644660:intron 25.0%
! TGTAACAACACAAATATCTT+AGG - chr4_3:48740018-48740037 None:intergenic 25.0%
! AACAAGATACACAAAAATGA+CGG - chr4_3:48740113-48740132 None:intergenic 25.0%
!!! TTTCTGAAATAATAGTAACC+CGG + chr4_3:48740132-48740151 Msa0644660:three_prime_UTR 25.0%
CAAGCTTGATCAAAAAGATA+AGG - chr4_3:48733956-48733975 None:intergenic 30.0%
ATGAAAAGAAGAAATTAGCG+AGG + chr4_3:48734295-48734314 Msa0644660:five_prime_UTR 30.0%
CTGGAACTCAATTATTATAC+AGG - chr4_3:48734480-48734499 None:intergenic 30.0%
TGCAAATTATGCAATCGAAA+AGG - chr4_3:48734555-48734574 None:intergenic 30.0%
! TTCTTATGATTTGCATCCAT+AGG + chr4_3:48734743-48734762 Msa0644660:five_prime_UTR 30.0%
ATCCATAGGCTTATTCAATT+AGG + chr4_3:48734757-48734776 Msa0644660:five_prime_UTR 30.0%
AACCTAATTGAATAAGCCTA+TGG - chr4_3:48734762-48734781 None:intergenic 30.0%
TTCATGATATTGAGATTCCA+TGG + chr4_3:48735101-48735120 Msa0644660:exon 30.0%
! GAAAATTTGCTCCTTCTAAT+GGG + chr4_3:48735136-48735155 Msa0644660:CDS 30.0%
!! CATTTTGTTTCCCATTTATG+TGG + chr4_3:48735355-48735374 Msa0644660:intron 30.0%
GATAAACAGAACCACATAAA+TGG - chr4_3:48735369-48735388 None:intergenic 30.0%
! GATTTTCATGGCAATACAAT+TGG + chr4_3:48735584-48735603 Msa0644660:CDS 30.0%
AATGTGACAAAATCGTACAT+TGG - chr4_3:48736099-48736118 None:intergenic 30.0%
!! GAGATTTGTTAACTTTGCTA+AGG + chr4_3:48736495-48736514 Msa0644660:three_prime_UTR 30.0%
ATGAAATTATAGATTGGGTC+GGG - chr4_3:48736575-48736594 None:intergenic 30.0%
GATGAAATTATAGATTGGGT+CGG - chr4_3:48736576-48736595 None:intergenic 30.0%
TGACCTTATGTAAATTGGAA+AGG - chr4_3:48736677-48736696 None:intergenic 30.0%
TCAGTTGACCTTATGTAAAT+TGG - chr4_3:48736682-48736701 None:intergenic 30.0%
GTTACAATTTACTGCCAATA+AGG + chr4_3:48736706-48736725 Msa0644660:three_prime_UTR 30.0%
CTTATACCTGACATTAAACT+TGG + chr4_3:48737030-48737049 Msa0644660:intron 30.0%
TCAATTCCAAGTTTAATGTC+AGG - chr4_3:48737039-48737058 None:intergenic 30.0%
!!! CTTGTCTTCTTTTTTGACAT+AGG + chr4_3:48737128-48737147 Msa0644660:intron 30.0%
CACTAATAGTATGTACTTGA+AGG - chr4_3:48737261-48737280 None:intergenic 30.0%
!!! GTGAAACTACATTTTTTCGT+TGG + chr4_3:48737296-48737315 Msa0644660:intron 30.0%
!!! CAAAATTCAGTTTTGTTAGC+CGG + chr4_3:48737429-48737448 Msa0644660:intron 30.0%
!!! AAAATTCAGTTTTGTTAGCC+GGG + chr4_3:48737430-48737449 Msa0644660:intron 30.0%
!!! GAAAATATTTTGATGCCAAG+TGG + chr4_3:48737567-48737586 Msa0644660:intron 30.0%
!! TTGTACTTTTTGTTCCTCTA+AGG + chr4_3:48737746-48737765 Msa0644660:intron 30.0%
TCTTGTATCCCTATATATAG+AGG - chr4_3:48737972-48737991 None:intergenic 30.0%
AAGGCTGATAGAATATAAGA+AGG - chr4_3:48738116-48738135 None:intergenic 30.0%
AGTTCAATTCTTAAAGGTAG+AGG - chr4_3:48738139-48738158 None:intergenic 30.0%
GAGGATAGTTCAATTCTTAA+AGG - chr4_3:48738145-48738164 None:intergenic 30.0%
TCTACCATTTGTTCTATCAT+TGG + chr4_3:48738231-48738250 Msa0644660:intron 30.0%
! TCCTTCAACTTTTTATGCAA+CGG + chr4_3:48738258-48738277 Msa0644660:intron 30.0%
CGATATCATAAAGATGACAA+TGG - chr4_3:48738332-48738351 None:intergenic 30.0%
TCGACCTTAATTTATTGTTG+GGG + chr4_3:48738349-48738368 Msa0644660:intron 30.0%
TCATACAAGATAGATGCAAT+GGG - chr4_3:48738395-48738414 None:intergenic 30.0%
ATCATACAAGATAGATGCAA+TGG - chr4_3:48738396-48738415 None:intergenic 30.0%
AGGAATGAAAGACAAGTATA+TGG - chr4_3:48738508-48738527 None:intergenic 30.0%
TGGAAACATGATTTGAAAAC+AGG - chr4_3:48738528-48738547 None:intergenic 30.0%
! CTGAAAAAGTATATGGAAAC+AGG - chr4_3:48738579-48738598 None:intergenic 30.0%
AAATTCCAACATTTCGGATT+TGG - chr4_3:48738626-48738645 None:intergenic 30.0%
ACCTAGAAATTCCAACATTT+CGG - chr4_3:48738632-48738651 None:intergenic 30.0%
ACTTTCTTATTAAACAGAGG+AGG + chr4_3:48738754-48738773 Msa0644660:intron 30.0%
CTTTCTTATTAAACAGAGGA+GGG + chr4_3:48738755-48738774 Msa0644660:intron 30.0%
AGTTATCATTATGGCTATAG+CGG + chr4_3:48739209-48739228 Msa0644660:intron 30.0%
! ATCTAAATTATACTGGCTGT+TGG + chr4_3:48739444-48739463 Msa0644660:intron 30.0%
ATCCTTACATGAGCAAATTA+TGG - chr4_3:48739502-48739521 None:intergenic 30.0%
TAAGGATATGTAGAGATTCT+AGG + chr4_3:48739515-48739534 Msa0644660:intron 30.0%
CGGTATTATAAACAGTAAGT+TGG - chr4_3:48739653-48739672 None:intergenic 30.0%
CTTACTGTTTATAATACCGA+TGG + chr4_3:48739654-48739673 Msa0644660:intron 30.0%
! TTTAATATCGGTGTCTACTT+CGG - chr4_3:48739852-48739871 None:intergenic 30.0%
ATTGAAATCCTTCGCAAAAA+AGG - chr4_3:48739923-48739942 None:intergenic 30.0%
CTCAAATAGAAATTTGTCCA+TGG - chr4_3:48740047-48740066 None:intergenic 30.0%
TAAACGGTATGCTAAGAAAA+TGG + chr4_3:48740178-48740197 Msa0644660:three_prime_UTR 30.0%
AAAAGAAGAAATTAGCGAGG+AGG + chr4_3:48734298-48734317 Msa0644660:five_prime_UTR 35.0%
AAAGAAGAAATTAGCGAGGA+GGG + chr4_3:48734299-48734318 Msa0644660:five_prime_UTR 35.0%
ATGGAAGGAAGAAAAGAAGA+GGG - chr4_3:48734454-48734473 None:intergenic 35.0%
AATGGAAGGAAGAAAAGAAG+AGG - chr4_3:48734455-48734474 None:intergenic 35.0%
ATCATAAGAAAAACGACACG+TGG - chr4_3:48734733-48734752 None:intergenic 35.0%
! ATGTCAAATACCGGTTATAG+AGG + chr4_3:48734888-48734907 Msa0644660:five_prime_UTR 35.0%
! TGTCAAATACCGGTTATAGA+GGG + chr4_3:48734889-48734908 Msa0644660:five_prime_UTR 35.0%
CTATAGCTACTATTGCATAG+TGG + chr4_3:48734913-48734932 Msa0644660:intron 35.0%
AAAAGCAAGACACTTGACAT+CGG - chr4_3:48734983-48735002 None:intergenic 35.0%
! TTAGAAGGAGCAAATTTTCC+AGG - chr4_3:48735135-48735154 None:intergenic 35.0%
! GGAAAATTTGCTCCTTCTAA+TGG + chr4_3:48735135-48735154 Msa0644660:CDS 35.0%
ACATAGATAGACCCATTAGA+AGG - chr4_3:48735150-48735169 None:intergenic 35.0%
TTCAGCCAACATATTATCGT+CGG - chr4_3:48735193-48735212 None:intergenic 35.0%
!!! GCTGAATATTTTGGAACCAT+TGG + chr4_3:48735207-48735226 Msa0644660:CDS 35.0%
TGGAACCATTGGAGTTATAA+AGG + chr4_3:48735218-48735237 Msa0644660:CDS 35.0%
CCATACCTTTATAACTCCAA+TGG - chr4_3:48735226-48735245 None:intergenic 35.0%
CCATTGGAGTTATAAAGGTA+TGG + chr4_3:48735223-48735242 Msa0644660:intron 35.0%
CAAATAAACCTCACTTTGCA+AGG - chr4_3:48735303-48735322 None:intergenic 35.0%
GTGAAAAATGAGTGATAGTC+TGG - chr4_3:48735409-48735428 None:intergenic 35.0%
TTGCAGAAAGATAAACGTAC+AGG + chr4_3:48735443-48735462 Msa0644660:intron 35.0%
TGCAGAAAGATAAACGTACA+GGG + chr4_3:48735444-48735463 Msa0644660:intron 35.0%
GTACAGGGAAACCTAAAATA+TGG + chr4_3:48735459-48735478 Msa0644660:CDS 35.0%
AAAGAGACGAATGAACCAAA+GGG + chr4_3:48735494-48735513 Msa0644660:CDS 35.0%
! TATAGCGGAGTCAAAAAACA+AGG + chr4_3:48735613-48735632 Msa0644660:CDS 35.0%
CTGCTATTGCAGTATATGTT+TGG - chr4_3:48735643-48735662 None:intergenic 35.0%
ATATCACAGACCTTGTATTC+GGG - chr4_3:48735796-48735815 None:intergenic 35.0%
CATATCACAGACCTTGTATT+CGG - chr4_3:48735797-48735816 None:intergenic 35.0%
!! CGAATGTGAACTTTGCTTTT+CGG + chr4_3:48735914-48735933 Msa0644660:three_prime_UTR 35.0%
!! GAATGTGAACTTTGCTTTTC+GGG + chr4_3:48735915-48735934 Msa0644660:three_prime_UTR 35.0%
!! AATGTGAACTTTGCTTTTCG+GGG + chr4_3:48735916-48735935 Msa0644660:three_prime_UTR 35.0%
ACAAAATCGTACATTGGACA+AGG - chr4_3:48736093-48736112 None:intergenic 35.0%
GTAACCCAATTGATGAAACT+GGG - chr4_3:48736260-48736279 None:intergenic 35.0%
AGTAACCCAATTGATGAAAC+TGG - chr4_3:48736261-48736280 None:intergenic 35.0%
CATACTCTTGTGAATGAACA+TGG + chr4_3:48736396-48736415 Msa0644660:three_prime_UTR 35.0%
TGGCCTTTCCAATTTACATA+AGG + chr4_3:48736671-48736690 Msa0644660:three_prime_UTR 35.0%
GTCAAAGATTTGCACCTTAT+TGG - chr4_3:48736723-48736742 None:intergenic 35.0%
AAAGAGAAGTTCAGTAGATG+AGG - chr4_3:48736782-48736801 None:intergenic 35.0%
!! CCTAAATTTGCTACAACAAC+TGG - chr4_3:48736857-48736876 None:intergenic 35.0%
CCAGTTGTTGTAGCAAATTT+AGG + chr4_3:48736854-48736873 Msa0644660:three_prime_UTR 35.0%
! TGCAAGTTGGCTATATGATA+TGG + chr4_3:48736913-48736932 Msa0644660:three_prime_UTR 35.0%
! GCAAGTTGGCTATATGATAT+GGG + chr4_3:48736914-48736933 Msa0644660:three_prime_UTR 35.0%
! CAAGTTGGCTATATGATATG+GGG + chr4_3:48736915-48736934 Msa0644660:three_prime_UTR 35.0%
! TAAGTACTGTATAACAGCCT+CGG - chr4_3:48737014-48737033 None:intergenic 35.0%
!!! CTTCTTTTTTGACATAGGTG+TGG + chr4_3:48737133-48737152 Msa0644660:intron 35.0%
ATAGGTGTGGCAATATCAAT+TGG + chr4_3:48737146-48737165 Msa0644660:intron 35.0%
TAGGTGTGGCAATATCAATT+GGG + chr4_3:48737147-48737166 Msa0644660:intron 35.0%
ATTTGCAATACAAACAAGCC+TGG + chr4_3:48737190-48737209 Msa0644660:three_prime_UTR 35.0%
TTTGCAATACAAACAAGCCT+GGG + chr4_3:48737191-48737210 Msa0644660:three_prime_UTR 35.0%
ACAAATTACAGCATTCACCT+TGG - chr4_3:48737357-48737376 None:intergenic 35.0%
AGTATCCTAGATATGCAATG+TGG + chr4_3:48737455-48737474 Msa0644660:intron 35.0%
ACAATCCACATTGCATATCT+AGG - chr4_3:48737463-48737482 None:intergenic 35.0%
AGAAGTTCAAAATAGCCACT+TGG - chr4_3:48737502-48737521 None:intergenic 35.0%
ATATGATGATCATTGTGAGC+AGG - chr4_3:48737660-48737679 None:intergenic 35.0%
ACAGAAACCAAGACAAAGAT+AGG - chr4_3:48737892-48737911 None:intergenic 35.0%
GTATCCCTATATATAGAGGT+TGG - chr4_3:48737968-48737987 None:intergenic 35.0%
CAATTCTTAAAGGTAGAGGA+AGG - chr4_3:48738135-48738154 None:intergenic 35.0%
AGCTCCAATGATAGAACAAA+TGG - chr4_3:48738238-48738257 None:intergenic 35.0%
ACCGTTGCATAAAAAGTTGA+AGG - chr4_3:48738262-48738281 None:intergenic 35.0%
CATACAAGATAGATGCAATG+GGG - chr4_3:48738394-48738413 None:intergenic 35.0%
TCTATCTTGTATGATGAACC+TGG + chr4_3:48738401-48738420 Msa0644660:intron 35.0%
CTATCTTGTATGATGAACCT+GGG + chr4_3:48738402-48738421 Msa0644660:intron 35.0%
TATCTTGTATGATGAACCTG+GGG + chr4_3:48738403-48738422 Msa0644660:intron 35.0%
TCAATGATGAGATAGAGACA+TGG - chr4_3:48738548-48738567 None:intergenic 35.0%
TCCGAAATGTTGGAATTTCT+AGG + chr4_3:48738628-48738647 Msa0644660:intron 35.0%
TTACAAAGAGCTTGATGAAG+AGG + chr4_3:48738789-48738808 Msa0644660:three_prime_UTR 35.0%
! TTTTCTTACTGTCAGGATGA+TGG + chr4_3:48738909-48738928 Msa0644660:intron 35.0%
! AGTTTCAGATTGCTGTGTTT+TGG - chr4_3:48738979-48738998 None:intergenic 35.0%
AACAATGTTAGGGAACATGT+GGG - chr4_3:48739175-48739194 None:intergenic 35.0%
TAACAATGTTAGGGAACATG+TGG - chr4_3:48739176-48739195 None:intergenic 35.0%
GTTATCATTATGGCTATAGC+GGG + chr4_3:48739210-48739229 Msa0644660:intron 35.0%
TTGCAAAAAGAATGCCGAAA+AGG - chr4_3:48739299-48739318 None:intergenic 35.0%
! TATATTTGCTAGTTGCTTGC+CGG + chr4_3:48739396-48739415 Msa0644660:intron 35.0%
ATGAGCAAATTATGGCAACA+TGG - chr4_3:48739494-48739513 None:intergenic 35.0%
!! TGCCATAATTTGCTCATGTA+AGG + chr4_3:48739497-48739516 Msa0644660:intron 35.0%
! TTGATGATCACATATCAGAG+TGG - chr4_3:48739595-48739614 None:intergenic 35.0%
TGTTTATAATACCGATGGCA+GGG + chr4_3:48739659-48739678 Msa0644660:intron 35.0%
GGATATCAATCCCCAATTTA+AGG - chr4_3:48739961-48739980 None:intergenic 35.0%
! GTGTTGTTACAGTATTTCCA+TGG + chr4_3:48740027-48740046 Msa0644660:three_prime_UTR 35.0%
ATTTCATACTAGCGTCCAGA+CGG - chr4_3:48734117-48734136 None:intergenic 40.0%
AAAAAAAGGAGAATGGCCGT+AGG + chr4_3:48734235-48734254 Msa0644660:intron 40.0%
AAAAAAGGAGAATGGCCGTA+GGG + chr4_3:48734236-48734255 Msa0644660:intron 40.0%
AAGAAGAAATTAGCGAGGAG+GGG + chr4_3:48734300-48734319 Msa0644660:five_prime_UTR 40.0%
TGGAAGGAAGAAAAGAAGAG+GGG - chr4_3:48734453-48734472 None:intergenic 40.0%
GCGGAAGCTGAAAATATCAT+AGG - chr4_3:48734621-48734640 None:intergenic 40.0%
GCGAACACTACATAACTGTT+TGG - chr4_3:48734851-48734870 None:intergenic 40.0%
! GTCAAATACCGGTTATAGAG+GGG + chr4_3:48734890-48734909 Msa0644660:five_prime_UTR 40.0%
GTATTGTCAATTGCAGATCG+CGG - chr4_3:48734961-48734980 None:intergenic 40.0%
TATGTCTGCAACTTGCCTTA+TGG + chr4_3:48735165-48735184 Msa0644660:CDS 40.0%
ATGTCTGCAACTTGCCTTAT+GGG + chr4_3:48735166-48735185 Msa0644660:CDS 40.0%
ATATTATCGTCGGTCCCATA+AGG - chr4_3:48735183-48735202 None:intergenic 40.0%
! TTTTCTGTCCTTGCAAAGTG+AGG + chr4_3:48735292-48735311 Msa0644660:intron 40.0%
GTTCATTCGTCTCTTTGTCA+TGG - chr4_3:48735490-48735509 None:intergenic 40.0%
CAAAGAGACGAATGAACCAA+AGG + chr4_3:48735493-48735512 Msa0644660:CDS 40.0%
AGATGCTACTGTGACATATG+AGG + chr4_3:48735517-48735536 Msa0644660:CDS 40.0%
ATATACTGCAATAGCAGACC+CGG + chr4_3:48735646-48735665 Msa0644660:CDS 40.0%
ACATCACTTTCAGTTTCCTC+TGG - chr4_3:48735695-48735714 None:intergenic 40.0%
GAAACTGAAAGTGATGTCGA+TGG + chr4_3:48735698-48735717 Msa0644660:CDS 40.0%
! AGTGATGTCGATGGTGTTAA+TGG + chr4_3:48735707-48735726 Msa0644660:CDS 40.0%
CAAGGTCTGTGATATGAGAT+TGG + chr4_3:48735801-48735820 Msa0644660:exon 40.0%
TCAGACAACGGAAAGAATGT+GGG - chr4_3:48736125-48736144 None:intergenic 40.0%
ATCAGACAACGGAAAGAATG+TGG - chr4_3:48736126-48736145 None:intergenic 40.0%
GTTGCCCAGTTTCATCAATT+GGG + chr4_3:48736253-48736272 Msa0644660:three_prime_UTR 40.0%
TATTATGTTGGACGTAGTGC+TGG + chr4_3:48736298-48736317 Msa0644660:three_prime_UTR 40.0%
TTGCAAAGTGCAAAATCAGG+AGG - chr4_3:48736463-48736482 None:intergenic 40.0%
ACGTTGCAAAGTGCAAAATC+AGG - chr4_3:48736466-48736485 None:intergenic 40.0%
! GATTTTGCACTTTGCAACGT+TGG + chr4_3:48736466-48736485 Msa0644660:three_prime_UTR 40.0%
TTGCTTGAGTGCAAATCTAG+TGG + chr4_3:48736651-48736670 Msa0644660:three_prime_UTR 40.0%
AAGTTCAGTAGATGAGGACA+AGG - chr4_3:48736776-48736795 None:intergenic 40.0%
! TCTGTCTCTTTTGTCCTTGT+GGG + chr4_3:48736804-48736823 Msa0644660:three_prime_UTR 40.0%
!! GTGGCAGTTGATTTTGCATT+TGG + chr4_3:48736829-48736848 Msa0644660:three_prime_UTR 40.0%
ATTGTACACCGTTGGAACTT+GGG + chr4_3:48736883-48736902 Msa0644660:three_prime_UTR 40.0%
GCTATATGATATGGGGCTTA+TGG + chr4_3:48736922-48736941 Msa0644660:three_prime_UTR 40.0%
GCTCTGCTTAACTGAACATT+AGG + chr4_3:48736988-48737007 Msa0644660:intron 40.0%
TGGAATTGATCTGCATGATG+TGG + chr4_3:48737050-48737069 Msa0644660:intron 40.0%
GCAATATCAATTGGGCAAAG+CGG + chr4_3:48737155-48737174 Msa0644660:three_prime_UTR 40.0%
! TATGCAATGTGGATTGTCAG+CGG + chr4_3:48737466-48737485 Msa0644660:intron 40.0%
! TGCCGATGTATGTGATTTTG+CGG + chr4_3:48737721-48737740 Msa0644660:intron 40.0%
TGCCGCAAAATCACATACAT+CGG - chr4_3:48737726-48737745 None:intergenic 40.0%
!! AGCATTGATAAAGAGAGTGG+AGG - chr4_3:48738164-48738183 None:intergenic 40.0%
!! TGGAGCATTGATAAAGAGAG+TGG - chr4_3:48738167-48738186 None:intergenic 40.0%
CTCTTTATCAATGCTCCAAC+AGG + chr4_3:48738169-48738188 Msa0644660:intron 40.0%
ATATTGTGGAGAAGACCTGT+TGG - chr4_3:48738187-48738206 None:intergenic 40.0%
CCTAGCTTAGAGGTGAAAAT+AGG - chr4_3:48738456-48738475 None:intergenic 40.0%
! CCTATTTTCACCTCTAAGCT+AGG + chr4_3:48738453-48738472 Msa0644660:intron 40.0%
TTCCTCCAAATCCGAAATGT+TGG + chr4_3:48738618-48738637 Msa0644660:intron 40.0%
TTCCAACATTTCGGATTTGG+AGG - chr4_3:48738623-48738642 None:intergenic 40.0%
TTGAAGAAACTAAACGTCGC+AGG + chr4_3:48738815-48738834 Msa0644660:three_prime_UTR 40.0%
GGTGAGCTGTATGATGAATT+TGG + chr4_3:48738930-48738949 Msa0644660:three_prime_UTR 40.0%
TGGCACGGAATTTCTTCTTA+AGG - chr4_3:48738959-48738978 None:intergenic 40.0%
AGTGTGATAGACAATGGGAA+GGG - chr4_3:48739149-48739168 None:intergenic 40.0%
AAGTGTGATAGACAATGGGA+AGG - chr4_3:48739150-48739169 None:intergenic 40.0%
! GGGAAAGTGTGATAGACAAT+GGG - chr4_3:48739154-48739173 None:intergenic 40.0%
ACAATGTTAGGGAACATGTG+GGG - chr4_3:48739174-48739193 None:intergenic 40.0%
! TTCGGCATTCTTTTTGCAAC+TGG + chr4_3:48739300-48739319 Msa0644660:intron 40.0%
CTGTTTATAATACCGATGGC+AGG + chr4_3:48739658-48739677 Msa0644660:intron 40.0%
ACAGAAAAAAGCAGAGACAG+AGG + chr4_3:48739697-48739716 Msa0644660:three_prime_UTR 40.0%
TTCTCTGCTCTCCATCATAA+CGG - chr4_3:48739738-48739757 None:intergenic 40.0%
AAAGCAGTCGAAATAGAGAG+AGG + chr4_3:48739782-48739801 Msa0644660:three_prime_UTR 40.0%
AAGCAGTCGAAATAGAGAGA+GGG + chr4_3:48739783-48739802 Msa0644660:three_prime_UTR 40.0%
GCATTCTGATGTCTTGACTA+TGG + chr4_3:48739887-48739906 Msa0644660:three_prime_UTR 40.0%
!!! ACGTGTAACCTTTTTTGCGA+AGG + chr4_3:48739912-48739931 Msa0644660:three_prime_UTR 40.0%
CTGAAATAATAGTAACCCGG+TGG + chr4_3:48740135-48740154 Msa0644660:three_prime_UTR 40.0%
! TGGTCTTTTGTCAATTCCAC+CGG - chr4_3:48740154-48740173 None:intergenic 40.0%
TGGAATTGACAAAAGACCAC+AGG + chr4_3:48740155-48740174 Msa0644660:three_prime_UTR 40.0%
GACAAAAGACCACAGGTAAA+CGG + chr4_3:48740162-48740181 Msa0644660:three_prime_UTR 40.0%
ACGGTATGCTAAGAAAATGG+TGG + chr4_3:48740181-48740200 Msa0644660:three_prime_UTR 40.0%
! AAGAAAATGGTGGCTTTTCC+AGG + chr4_3:48740191-48740210 Msa0644660:three_prime_UTR 40.0%
ATGTGTTACACGAGTTAGCG+CGG + chr4_3:48734059-48734078 Msa0644660:five_prime_UTR 45.0%
TTTCATACTAGCGTCCAGAC+GGG - chr4_3:48734116-48734135 None:intergenic 45.0%
AGAAGAAATTAGCGAGGAGG+GGG + chr4_3:48734301-48734320 Msa0644660:five_prime_UTR 45.0%
AGCTATAGCCCCTCTATAAC+CGG - chr4_3:48734901-48734920 None:intergenic 45.0%
CAATTGCAGATCGCGGAAAA+TGG - chr4_3:48734954-48734973 None:intergenic 45.0%
!!! GAGCTCTGTGCTGGTTTTAA+CGG + chr4_3:48735070-48735089 Msa0644660:five_prime_UTR 45.0%
! TTTTCCAGGAATGCTTGCCA+TGG - chr4_3:48735121-48735140 None:intergenic 45.0%
TGGGACCGACGATAATATGT+TGG + chr4_3:48735185-48735204 Msa0644660:CDS 45.0%
! GTCGATGGTGTTAATGGAAG+AGG + chr4_3:48735713-48735732 Msa0644660:CDS 45.0%
TTGATGCTTCCAGCAAACCA+TGG + chr4_3:48735747-48735766 Msa0644660:CDS 45.0%
AGCAAACCATGGCAACAAGA+GGG + chr4_3:48735758-48735777 Msa0644660:CDS 45.0%
ATTGGATGTGCCCGAATACA+AGG + chr4_3:48735783-48735802 Msa0644660:CDS 45.0%
ATTGGACAAGGCCAGTCATT+GGG - chr4_3:48736081-48736100 None:intergenic 45.0%
CAGACAACGGAAAGAATGTG+GGG - chr4_3:48736124-48736143 None:intergenic 45.0%
CGTTGCCCAGTTTCATCAAT+TGG + chr4_3:48736252-48736271 Msa0644660:three_prime_UTR 45.0%
ATGCAAAAGGGGACGCAATT+TGG - chr4_3:48736537-48736556 None:intergenic 45.0%
GGAAGCAATCATCATGTGAG+AGG + chr4_3:48736628-48736647 Msa0644660:three_prime_UTR 45.0%
!! CTTTGTTGTTAACCTCTCCC+CGG + chr4_3:48736742-48736761 Msa0644660:three_prime_UTR 45.0%
!! TTTGTTGTTAACCTCTCCCC+GGG + chr4_3:48736743-48736762 Msa0644660:three_prime_UTR 45.0%
CACAAGGACAAAAGAGACAG+AGG - chr4_3:48736805-48736824 None:intergenic 45.0%
! CTCTGTCTCTTTTGTCCTTG+TGG + chr4_3:48736803-48736822 Msa0644660:three_prime_UTR 45.0%
!! TCTTTTGTCCTTGTGGGTTG+TGG + chr4_3:48736810-48736829 Msa0644660:three_prime_UTR 45.0%
GGACTAAGATTGTACACCGT+TGG + chr4_3:48736875-48736894 Msa0644660:three_prime_UTR 45.0%
GATTGTACACCGTTGGAACT+TGG + chr4_3:48736882-48736901 Msa0644660:three_prime_UTR 45.0%
ACTACACTCCCAAGTTCCAA+CGG - chr4_3:48736894-48736913 None:intergenic 45.0%
CTTAACTGAACATTAGGCCG+AGG + chr4_3:48736994-48737013 Msa0644660:intron 45.0%
ATTAGTGACACCTCTGATGC+AGG + chr4_3:48737274-48737293 Msa0644660:intron 45.0%
TGTAGTTTCACCTGCATCAG+AGG - chr4_3:48737287-48737306 None:intergenic 45.0%
! GCATATCTAGGATACTGACC+CGG - chr4_3:48737451-48737470 None:intergenic 45.0%
GGTTTGGCCTATCTTTGTCT+TGG + chr4_3:48737882-48737901 Msa0644660:intron 45.0%
GATGCAATGGGGATGAATAC+AGG - chr4_3:48738383-48738402 None:intergenic 45.0%
GCACACAAAACCTAGCTTAG+AGG - chr4_3:48738466-48738485 None:intergenic 45.0%
AAGAAACTAAACGTCGCAGG+CGG + chr4_3:48738818-48738837 Msa0644660:three_prime_UTR 45.0%
!!! CAGATTGCTGTGTTTTGGCA+CGG - chr4_3:48738974-48738993 None:intergenic 45.0%
AGCTAATGCTGCAACTTTGC+AGG + chr4_3:48739103-48739122 Msa0644660:intron 45.0%
TGTGATAGACAATGGGAAGG+GGG - chr4_3:48739147-48739166 None:intergenic 45.0%
GTGTGATAGACAATGGGAAG+GGG - chr4_3:48739148-48739167 None:intergenic 45.0%
! GGGGAAAGTGTGATAGACAA+TGG - chr4_3:48739155-48739174 None:intergenic 45.0%
AGACAGAGGAAGAGAGTCAA+GGG + chr4_3:48739711-48739730 Msa0644660:three_prime_UTR 45.0%
! GAGAAACAGAGAGCATAACG+AGG + chr4_3:48739753-48739772 Msa0644660:three_prime_UTR 45.0%
TCGAAATAGAGAGAGGGACA+GGG + chr4_3:48739789-48739808 Msa0644660:three_prime_UTR 45.0%
AGAGATCGAGACAGGGATTA+TGG + chr4_3:48739814-48739833 Msa0644660:three_prime_UTR 45.0%
ACAGGGATTATGGACGAGAA+CGG + chr4_3:48739824-48739843 Msa0644660:three_prime_UTR 45.0%
! GGTCTTTTGTCAATTCCACC+GGG - chr4_3:48740153-48740172 None:intergenic 45.0%
CTTAGCATACCGTTTACCTG+TGG - chr4_3:48740174-48740193 None:intergenic 45.0%
!! TAAAAAATAAATAAAAACTA+GGG - chr4_3:48737404-48737423 None:intergenic 5.0%
!! TTAAAAAATAAATAAAAACT+AGG - chr4_3:48737405-48737424 None:intergenic 5.0%
!!! GTTTTTATTTATTTTTTAAT+TGG + chr4_3:48737406-48737425 Msa0644660:intron 5.0%
!! TAATTATAATTATAATTGAA+CGG - chr4_3:48737525-48737544 None:intergenic 5.0%
AGTTAGCGCGGTAGAAAGAG+CGG + chr4_3:48734071-48734090 Msa0644660:five_prime_UTR 50.0%
GTGATTTATCGCTCCGTCTG+CGG - chr4_3:48734330-48734349 None:intergenic 50.0%
! AGAATCGAAGAAGCGCGTGA+CGG - chr4_3:48734415-48734434 None:intergenic 50.0%
! GTTTTCTCAGAGCTCTGTGC+TGG + chr4_3:48735061-48735080 Msa0644660:five_prime_UTR 50.0%
GATTCCATGGCAAGCATTCC+TGG + chr4_3:48735114-48735133 Msa0644660:exon 50.0%
GTCACAGTAGCATCTCCCTT+TGG - chr4_3:48735512-48735531 None:intergenic 50.0%
AAACCACTCAACAGCAGCCA+CGG - chr4_3:48735555-48735574 None:intergenic 50.0%
ACGTCAGTACCAGCAACAAC+CGG - chr4_3:48735668-48735687 None:intergenic 50.0%
!! GTTGTTGCTGGTACTGACGT+CGG + chr4_3:48735668-48735687 Msa0644660:CDS 50.0%
GGTGTTAATGGAAGAGGCAG+AGG + chr4_3:48735719-48735738 Msa0644660:CDS 50.0%
! CTCTTGTTGCCATGGTTTGC+TGG - chr4_3:48735759-48735778 None:intergenic 50.0%
CAGCAAACCATGGCAACAAG+AGG + chr4_3:48735757-48735776 Msa0644660:CDS 50.0%
GGCTATTTGGTCCCAATGAC+TGG + chr4_3:48736067-48736086 Msa0644660:three_prime_UTR 50.0%
CATTGGACAAGGCCAGTCAT+TGG - chr4_3:48736082-48736101 None:intergenic 50.0%
ATCAACTGCCACAACCCACA+AGG - chr4_3:48736821-48736840 None:intergenic 50.0%
! CTTGGGAGTGTAGTGCAAGT+TGG + chr4_3:48736900-48736919 Msa0644660:three_prime_UTR 50.0%
! CAATGTGGATTGTCAGCGGT+AGG + chr4_3:48737470-48737489 Msa0644660:intron 50.0%
TGGATTGTCAGCGGTAGGAT+AGG + chr4_3:48737475-48737494 Msa0644660:intron 50.0%
CATAAACGGGACTCTCCACT+TGG - chr4_3:48737585-48737604 None:intergenic 50.0%
CAAGTGGAGAGTCCCGTTTA+TGG + chr4_3:48737583-48737602 Msa0644660:intron 50.0%
AACCTGGGGTGCATAAACTC+TGG + chr4_3:48738417-48738436 Msa0644660:intron 50.0%
TACCAGAGTTTATGCACCCC+AGG - chr4_3:48738422-48738441 None:intergenic 50.0%
AGGACCATCAAACTCGAGTC+CGG - chr4_3:48739418-48739437 None:intergenic 50.0%
TCTCTGTCAATCCCTGCCAT+CGG - chr4_3:48739673-48739692 None:intergenic 50.0%
GAGACAGAGGAAGAGAGTCA+AGG + chr4_3:48739710-48739729 Msa0644660:three_prime_UTR 50.0%
GAGTCAAGGGACCGTTATGA+TGG + chr4_3:48739724-48739743 Msa0644660:three_prime_UTR 50.0%
! ACAGAGAGCATAACGAGGAG+AGG + chr4_3:48739758-48739777 Msa0644660:three_prime_UTR 50.0%
GTCGAAATAGAGAGAGGGAC+AGG + chr4_3:48739788-48739807 Msa0644660:three_prime_UTR 50.0%
CGAAATAGAGAGAGGGACAG+GGG + chr4_3:48739790-48739809 Msa0644660:three_prime_UTR 50.0%
CAGGGATTATGGACGAGAAC+GGG + chr4_3:48739825-48739844 Msa0644660:three_prime_UTR 50.0%
CCATGCATTCATCGCATTGC+AGG - chr4_3:48739982-48740001 None:intergenic 50.0%
CCTGCAATGCGATGAATGCA+TGG + chr4_3:48739979-48739998 Msa0644660:three_prime_UTR 50.0%
! AATGGTGGCTTTTCCAGGTG+TGG + chr4_3:48740196-48740215 Msa0644660:three_prime_UTR 50.0%
GTCACGCGCTTCTTCGATTC+TGG + chr4_3:48734414-48734433 Msa0644660:five_prime_UTR 55.0%
ATAGCAGACCCGGTTGTTGC+TGG + chr4_3:48735656-48735675 Msa0644660:CDS 55.0%
CGTCAGTACCAGCAACAACC+GGG - chr4_3:48735667-48735686 None:intergenic 55.0%
CAATCGCCCTCTTGTTGCCA+TGG - chr4_3:48735767-48735786 None:intergenic 55.0%
CATGGCAACAAGAGGGCGAT+TGG + chr4_3:48735765-48735784 Msa0644660:CDS 55.0%
GGTGCAACTGCAGGGCTATT+TGG + chr4_3:48736054-48736073 Msa0644660:three_prime_UTR 55.0%
TGAGGACAAGGACCAGAACC+CGG - chr4_3:48736764-48736783 None:intergenic 55.0%
AAACAAGCCTGGGCACAACG+AGG + chr4_3:48737201-48737220 Msa0644660:three_prime_UTR 55.0%
AACAAGCCTGGGCACAACGA+GGG + chr4_3:48737202-48737221 Msa0644660:three_prime_UTR 55.0%
AGCGGTAGGATAGGACCAAG+TGG + chr4_3:48737484-48737503 Msa0644660:intron 55.0%
TTAAACAGAGGAGGGCGAGC+TGG + chr4_3:48738763-48738782 Msa0644660:intron 55.0%
GAAACTGCACGAGTGCTTCC+TGG + chr4_3:48738993-48739012 Msa0644660:three_prime_UTR 55.0%
CACGAGTGCTTCCTGGTTCA+GGG + chr4_3:48739000-48739019 Msa0644660:three_prime_UTR 55.0%
GGTTGGGAGGTTGAGGATCT+AGG + chr4_3:48739029-48739048 Msa0644660:three_prime_UTR 55.0%
CTTGCCGGACTCGAGTTTGA+TGG + chr4_3:48739411-48739430 Msa0644660:intron 55.0%
ACAGGGGAAGAGATCGAGAC+AGG + chr4_3:48739806-48739825 Msa0644660:three_prime_UTR 55.0%
CAGGGGAAGAGATCGAGACA+GGG + chr4_3:48739807-48739826 Msa0644660:three_prime_UTR 55.0%
CGGTAGAAAGAGCGGACAGG+CGG + chr4_3:48734079-48734098 Msa0644660:five_prime_UTR 60.0%
GGTAGAAAGAGCGGACAGGC+GGG + chr4_3:48734080-48734099 Msa0644660:five_prime_UTR 60.0%
TGAGGATCCACATGCTGCCG+TGG + chr4_3:48735535-48735554 Msa0644660:CDS 60.0%
!! TGGTACTGACGTCGGACCAG+AGG + chr4_3:48735676-48735695 Msa0644660:CDS 60.0%
!! CAACGCCAGAAGCACCAGCA+GGG - chr4_3:48735969-48735988 None:intergenic 60.0%
! GACGTTCTGGGCCAGATGCA+GGG + chr4_3:48736013-48736032 Msa0644660:three_prime_UTR 60.0%
! ACGTTCTGGGCCAGATGCAG+GGG + chr4_3:48736014-48736033 Msa0644660:three_prime_UTR 60.0%
CTGCAGTTGCACCAGCTGGA+CGG - chr4_3:48736047-48736066 None:intergenic 60.0%
GTCCAGCTGGTGCAACTGCA+GGG + chr4_3:48736046-48736065 Msa0644660:three_prime_UTR 60.0%
GTTAACCTCTCCCCGGGTTC+TGG + chr4_3:48736749-48736768 Msa0644660:three_prime_UTR 60.0%
AGGACAAGGACCAGAACCCG+GGG - chr4_3:48736762-48736781 None:intergenic 60.0%
GAGGACAAGGACCAGAACCC+GGG - chr4_3:48736763-48736782 None:intergenic 60.0%
GGCACAACGAGGGTGGTGTA+AGG + chr4_3:48737212-48737231 Msa0644660:three_prime_UTR 60.0%
GCACGAGTGCTTCCTGGTTC+AGG + chr4_3:48738999-48739018 Msa0644660:three_prime_UTR 60.0%
!! TGGTTCAGGGCGTGCTGGTT+GGG + chr4_3:48739013-48739032 Msa0644660:three_prime_UTR 60.0%
GCGCGGTAGAAAGAGCGGAC+AGG + chr4_3:48734076-48734095 Msa0644660:five_prime_UTR 65.0%
GAGGAGGGGGATACCGCAGA+CGG + chr4_3:48734314-48734333 Msa0644660:five_prime_UTR 65.0%
ACAGCAGCCACGGCAGCATG+TGG - chr4_3:48735545-48735564 None:intergenic 65.0%
CTGCCGTGGCTGCTGTTGAG+TGG + chr4_3:48735549-48735568 Msa0644660:CDS 65.0%
CGGGGTGCGTGTAATCGCTG+TGG + chr4_3:48735934-48735953 Msa0644660:three_prime_UTR 65.0%
! TGTGGAAGTGCACGCCCTGC+TGG + chr4_3:48735952-48735971 Msa0644660:three_prime_UTR 65.0%
!! GCAACGCCAGAAGCACCAGC+AGG - chr4_3:48735970-48735989 None:intergenic 65.0%
GCTGGTGCTTCTGGCGTTGC+AGG + chr4_3:48735970-48735989 Msa0644660:three_prime_UTR 65.0%
GGTGCTTCTGGCGTTGCAGG+AGG + chr4_3:48735973-48735992 Msa0644660:three_prime_UTR 65.0%
GCTTCTGGCGTTGCAGGAGG+AGG + chr4_3:48735976-48735995 Msa0644660:three_prime_UTR 65.0%
TCTGGCGTTGCAGGAGGAGG+TGG + chr4_3:48735979-48735998 Msa0644660:three_prime_UTR 65.0%
! GGACGTTCTGGGCCAGATGC+AGG + chr4_3:48736012-48736031 Msa0644660:three_prime_UTR 65.0%
! CGTTCTGGGCCAGATGCAGG+GGG + chr4_3:48736015-48736034 Msa0644660:three_prime_UTR 65.0%
! GGGCCAGATGCAGGGGGTAT+TGG + chr4_3:48736021-48736040 Msa0644660:three_prime_UTR 65.0%
CGGCCAATACCCCCTGCATC+TGG - chr4_3:48736027-48736046 None:intergenic 65.0%
CGTCCAGCTGGTGCAACTGC+AGG + chr4_3:48736045-48736064 Msa0644660:three_prime_UTR 65.0%
AGCCCTGCAGTTGCACCAGC+TGG - chr4_3:48736051-48736070 None:intergenic 65.0%
AAGGACCAGAACCCGGGGAG+AGG - chr4_3:48736757-48736776 None:intergenic 65.0%
AAGCCTGGGCACAACGAGGG+TGG + chr4_3:48737205-48737224 Msa0644660:three_prime_UTR 65.0%
ACACCACCCTCGTTGTGCCC+AGG - chr4_3:48737211-48737230 None:intergenic 65.0%
AACAGAGGAGGGCGAGCTGG+AGG + chr4_3:48738766-48738785 Msa0644660:intron 65.0%
CTTCCTGGTTCAGGGCGTGC+TGG + chr4_3:48739008-48739027 Msa0644660:three_prime_UTR 65.0%
CAACCAGCACGCCCTGAACC+AGG - chr4_3:48739014-48739033 None:intergenic 65.0%
! CTGGTTCAGGGCGTGCTGGT+TGG + chr4_3:48739012-48739031 Msa0644660:three_prime_UTR 65.0%
!! TTCAGGGCGTGCTGGTTGGG+AGG + chr4_3:48739016-48739035 Msa0644660:three_prime_UTR 65.0%
!! GCGTGCTGGTTGGGAGGTTG+AGG + chr4_3:48739022-48739041 Msa0644660:three_prime_UTR 65.0%
GCACGCCCTGCTGGTGCTTC+TGG + chr4_3:48735961-48735980 Msa0644660:three_prime_UTR 70.0%
GTTGCAGGAGGAGGTGGCCG+TGG + chr4_3:48735985-48736004 Msa0644660:three_prime_UTR 70.0%
AGGAGGAGGTGGCCGTGGCA+GGG + chr4_3:48735990-48736009 Msa0644660:three_prime_UTR 70.0%
GCCGTGGCAGGGGACGTTCT+GGG + chr4_3:48736001-48736020 Msa0644660:three_prime_UTR 70.0%
GCCCAGAACGTCCCCTGCCA+CGG - chr4_3:48736005-48736024 None:intergenic 70.0%
!! GGGGGTATTGGCCGTCCAGC+TGG + chr4_3:48736033-48736052 Msa0644660:three_prime_UTR 70.0%
!! CGGGCACGAGAGTGCCCGTC+TGG + chr4_3:48734099-48734118 Msa0644660:five_prime_UTR 75.0%
CAGGAGGAGGTGGCCGTGGC+AGG + chr4_3:48735989-48736008 Msa0644660:three_prime_UTR 75.0%
GGAGGAGGTGGCCGTGGCAG+GGG + chr4_3:48735991-48736010 Msa0644660:three_prime_UTR 75.0%
GGCCGTGGCAGGGGACGTTC+TGG + chr4_3:48736000-48736019 Msa0644660:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 48733917 48740226 48733917 ID=Msa0644660;Name=Msa0644660
chr4_3 mRNA 48733917 48740226 48733917 ID=Msa0644660-mRNA-1;Parent=Msa0644660;Name=Msa0644660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1118|1|1|1|0.5|0.44|9|1877|162
chr4_3 exon 48733917 48734202 48733917 ID=Msa0644660-mRNA-1:exon:11591;Parent=Msa0644660-mRNA-1
chr4_3 exon 48734265 48734909 48734265 ID=Msa0644660-mRNA-1:exon:11592;Parent=Msa0644660-mRNA-1
chr4_3 exon 48734933 48735239 48734933 ID=Msa0644660-mRNA-1:exon:11593;Parent=Msa0644660-mRNA-1
chr4_3 exon 48735449 48735822 48735449 ID=Msa0644660-mRNA-1:exon:11594;Parent=Msa0644660-mRNA-1
chr4_3 exon 48735909 48736943 48735909 ID=Msa0644660-mRNA-1:exon:11595;Parent=Msa0644660-mRNA-1
chr4_3 exon 48737150 48737233 48737150 ID=Msa0644660-mRNA-1:exon:11596;Parent=Msa0644660-mRNA-1
chr4_3 exon 48738771 48738849 48738771 ID=Msa0644660-mRNA-1:exon:11597;Parent=Msa0644660-mRNA-1
chr4_3 exon 48738924 48739050 48738924 ID=Msa0644660-mRNA-1:exon:11598;Parent=Msa0644660-mRNA-1
chr4_3 exon 48739680 48740226 48739680 ID=Msa0644660-mRNA-1:exon:11599;Parent=Msa0644660-mRNA-1
chr4_3 five_prime_UTR 48733917 48734202 48733917 ID=Msa0644660-mRNA-1:five_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 five_prime_UTR 48734265 48734909 48734265 ID=Msa0644660-mRNA-1:five_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 five_prime_UTR 48734933 48735119 48734933 ID=Msa0644660-mRNA-1:five_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 CDS 48735120 48735239 48735120 ID=Msa0644660-mRNA-1:cds;Parent=Msa0644660-mRNA-1
chr4_3 CDS 48735449 48735817 48735449 ID=Msa0644660-mRNA-1:cds;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48735818 48735822 48735818 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48735909 48736943 48735909 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48737150 48737233 48737150 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48738771 48738849 48738771 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48738924 48739050 48738924 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
chr4_3 three_prime_UTR 48739680 48740226 48739680 ID=Msa0644660-mRNA-1:three_prime_utr;Parent=Msa0644660-mRNA-1
Gene Sequence

>Msa0644660

ATGGCAAGCATTCCTGGAAAATTTGCTCCTTCTAATGGGTCTATCTATGTCTGCAACTTGCCTTATGGGACCGACGATAATATGTTGGCTGAATATTTTGGAACCATTGGAGTTATAAAGAAAGATAAACGTACAGGGAAACCTAAAATATGGTTATACCATGACAAAGAGACGAATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCCGTGGCTGCTGTTGAGTGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTATATAGCGGAGTCAAAAAACAAGGATGACCAAACATATACTGCAATAGCAGACCCGGTTGTTGCTGGTACTGACGTCGGACCAGAGGAAACTGAAAGTGATGTCGATGGTGTTAATGGAAGAGGCAGAGGTCAAATTGATGCTTCCAGCAAACCATGGCAACAAGAGGGCGATTGGATGTGCCCGAATACAAGGTCTGTGATATGA
Protein sequence

>Msa0644660

MASIPGKFAPSNGSIYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGKPKIWLYHDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVYIAESKNKDDQTYTAIADPVVAGTDVGPEETESDVDGVNGRGRGQIDASSKPWQQEGDWMCPNTRSVI*