AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555450 MtrunA17_Chr4g0041421 100.000 91 0 0 1 91 1 91 1.18e-63 187
Msa0555450 MtrunA17_Chr4g0072361 45.455 66 36 0 15 80 8 73 1.33e-17 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555450 AT3G59810.3 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0555450 AT3G59810.1 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0555450 AT3G59810.2 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0555450 AT2G43810.2 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0555450 AT2G43810.3 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0555450 AT2G43810.1 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0555450 AT4G30220.1 48.485 66 34 0 15 80 8 73 1.39e-18 73.6
Msa0555450 AT4G30220.2 48.485 66 34 0 15 80 16 81 1.97e-18 73.2
Msa0555450 AT2G14285.1 50.000 46 23 0 35 80 1 46 3.90e-11 53.9

Find 47 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAACCAACATATATT+TGG 0.145854 4_1:-53451422 None:intergenic
AAATACTTGTTGGCATATTT+TGG 0.173229 4_1:+53451583 Msa0555450:three_prime_UTR
TCATGGTAATTGAGTTTCTA+TGG 0.245285 4_1:+53451521 Msa0555450:three_prime_UTR
AGGGTTAAACAGTGTAATTT+TGG 0.255032 4_1:+53448410 None:intergenic
GGTATCCTAGCTTGTCTAGA+TGG 0.292896 4_1:+53451159 Msa0555450:intron
GAGGAAATCAGCTGGAGTTT+TGG 0.321197 4_1:-53448739 None:intergenic
CCACTTTGTTAAATACTTGT+TGG 0.347405 4_1:+53451573 Msa0555450:three_prime_UTR
CAAACAGAGGAGTATGTTAA+TGG 0.355057 4_1:+53451204 Msa0555450:CDS
AAGGTACCTTTGCAGCGATA+TGG 0.363913 4_1:-53448541 None:intergenic
TTTGAGCATGAGTGAGGGTT+TGG 0.366980 4_1:-53448472 None:intergenic
TTCTGCTAGAGTCCTCTTTG+AGG 0.400676 4_1:-53451380 None:intergenic
GCATTCATTCGAGGGAATAA+TGG 0.408713 4_1:+53451252 Msa0555450:CDS
GGAACAGAGAAAAGTGGTTC+AGG 0.419839 4_1:+53448711 Msa0555450:CDS
GGACAGCTGAAGAACAAGTA+TGG 0.438644 4_1:+53451225 Msa0555450:CDS
AGGTACCTTTGCAGCGATAT+GGG 0.461847 4_1:-53448540 None:intergenic
TCTATGGTTATACTATATCA+AGG 0.496579 4_1:+53451537 Msa0555450:three_prime_UTR
GTCTACCACGAATGGATTTG+AGG 0.510106 4_1:-53448758 None:intergenic
AGATTGTAAAGAAAGAAGAA+AGG 0.520718 4_1:+53448682 Msa0555450:five_prime_UTR
AGAGGAATCCAAATATATGT+TGG 0.528071 4_1:+53451414 Msa0555450:three_prime_UTR
GATTTCCTCAAATCCATTCG+TGG 0.535672 4_1:+53448753 Msa0555450:CDS
AATCGAAAACGAGGCGCGAT+AGG 0.543071 4_1:-53448511 None:intergenic
GTATCCTAGCTTGTCTAGAT+GGG 0.549331 4_1:+53451160 Msa0555450:CDS
AACCACAGGTCTACCACGAA+TGG 0.553624 4_1:-53448766 None:intergenic
ATGGATTTGAGGAAATCAGC+TGG 0.557310 4_1:-53448747 None:intergenic
AAGAAAGAAGAAAGGATGAG+TGG 0.559744 4_1:+53448690 Msa0555450:exon
TATGGTGATGCATTCATTCG+AGG 0.561710 4_1:+53451243 Msa0555450:CDS
CAAAGAGGACTCTAGCAGAA+GGG 0.565739 4_1:+53451383 Msa0555450:CDS
CGCGACCCATATCGCTGCAA+AGG 0.580989 4_1:+53448535 Msa0555450:five_prime_UTR
TGTACATCAGTACCTCAAAG+AGG 0.584586 4_1:+53451368 Msa0555450:CDS
GAGTTGAGCTTAACAACCAC+AGG 0.590065 4_1:-53448780 None:intergenic
TATACCCATCTAGACAAGCT+AGG 0.590930 4_1:-53451164 None:intergenic
GTGGTTGTTAAGCTCAACTC+TGG 0.591462 4_1:+53448783 Msa0555450:CDS
CCAACAAGTATTTAACAAAG+TGG 0.591785 4_1:-53451573 None:intergenic
TGGGTATATGAATATTGCAA+TGG 0.592472 4_1:+53451179 Msa0555450:CDS
AGCAGAAGGGGCTTAAACAG+AGG 0.597578 4_1:+53451396 Msa0555450:exon
AAAGAGGACTCTAGCAGAAG+GGG 0.600102 4_1:+53451384 Msa0555450:CDS
TCAAAGAGGACTCTAGCAGA+AGG 0.600306 4_1:+53451382 Msa0555450:CDS
ACGAGGCGCGATAGGAGAGA+AGG 0.602822 4_1:-53448503 None:intergenic
ATGGTGATGCATTCATTCGA+GGG 0.615726 4_1:+53451244 Msa0555450:CDS
ATGAGTGGAACAGAGAAAAG+TGG 0.628047 4_1:+53448705 Msa0555450:CDS
AAAATAACAAATCATTTACT+CGG 0.630547 4_1:+53448440 Msa0555450:five_prime_UTR
TATTGCAATGGAACAAACAG+AGG 0.640288 4_1:+53451191 Msa0555450:CDS
ATCCATTCGTGGTAGACCTG+TGG 0.642884 4_1:+53448764 Msa0555450:CDS
AACTCTGGTGTTGACTATCG+AGG 0.657618 4_1:+53448798 Msa0555450:CDS
GGGTCGCGAAATCGAAAACG+AGG 0.687157 4_1:-53448520 None:intergenic
CAATTACCATGACAAACATG+AGG 0.688290 4_1:-53451510 None:intergenic
ACAAGTATTTAACAAAGTGG+CGG 0.696863 4_1:-53451570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTTTTTTTAAACT+CGG + chr4_1:53449048-53449067 Msa0555450:intron 10.0%
!!! TCATTTTTTTTTTTTAATTC+TGG + chr4_1:53449563-53449582 Msa0555450:intron 10.0%
!! ACTCATTTATTTATTTATTT+CGG + chr4_1:53450597-53450616 Msa0555450:intron 10.0%
!! AAAATAACAAATCATTTACT+CGG + chr4_1:53448440-53448459 Msa0555450:five_prime_UTR 15.0%
!! AATTAACATAACAAAAATCA+CGG - chr4_1:53448641-53448660 None:intergenic 15.0%
!!! TTTGTTATGTTAATTTTTGA+AGG + chr4_1:53448646-53448665 Msa0555450:intron 15.0%
!!! TTAATTTTTGAAGGTTTTTT+AGG + chr4_1:53448655-53448674 Msa0555450:intron 15.0%
!!! TAATTTTTGAAGGTTTTTTA+GGG + chr4_1:53448656-53448675 Msa0555450:intron 15.0%
!! TATTCATTTAGTTATTCAAT+AGG + chr4_1:53449778-53449797 Msa0555450:intron 15.0%
!! CATAATATAACAAATATAGA+TGG - chr4_1:53450315-53450334 None:intergenic 15.0%
!! GATATCTGAATAAGAAATTA+CGG - chr4_1:53448960-53448979 None:intergenic 20.0%
!! TCTTAGTTTACATTATTTGA+AGG + chr4_1:53448978-53448997 Msa0555450:intron 20.0%
!!! TTTTTTTTTTAAACTCGGTA+TGG + chr4_1:53449053-53449072 Msa0555450:intron 20.0%
!! TAACTTTAAATTAGACAGAA+AGG - chr4_1:53450565-53450584 None:intergenic 20.0%
!! GTAACTAATCTTATAGTTAT+TGG + chr4_1:53450807-53450826 Msa0555450:intron 20.0%
!! AATTCAAACCAACATATATT+TGG - chr4_1:53451425-53451444 None:intergenic 20.0%
!!! TTGTAACTTTTTGTATTATG+TGG + chr4_1:53451456-53451475 Msa0555450:intron 20.0%
!! TAAAAAAGTTTCAGACAAAT+AGG - chr4_1:53451490-53451509 None:intergenic 20.0%
! AGATTGTAAAGAAAGAAGAA+AGG + chr4_1:53448682-53448701 Msa0555450:five_prime_UTR 25.0%
!! TTCATCAATTTTCCATTCTA+TGG + chr4_1:53448840-53448859 Msa0555450:intron 25.0%
!!! TGGATTTTGAATTCAAGTTT+AGG + chr4_1:53448885-53448904 Msa0555450:intron 25.0%
! TAGTTTACATTATTTGAAGG+CGG + chr4_1:53448981-53449000 Msa0555450:intron 25.0%
! TTCACAATAAAAAACCACAA+GGG - chr4_1:53449244-53449263 None:intergenic 25.0%
! ATTCACAATAAAAAACCACA+AGG - chr4_1:53449245-53449264 None:intergenic 25.0%
! TTTGGTTAAATGAAAAGAGA+TGG + chr4_1:53449367-53449386 Msa0555450:intron 25.0%
!! AAAGAATAGAGGTTCTAATT+TGG + chr4_1:53449459-53449478 Msa0555450:intron 25.0%
! TTTACTTTCTCTGTCTAATT+TGG + chr4_1:53449521-53449540 Msa0555450:intron 25.0%
!! ATTTGGAGTTATTATGAGAT+TGG + chr4_1:53449476-53449495 Msa0555450:intron 25.0%
! TAAGAGACAAATAGTAAGAA+AGG + chr4_1:53449697-53449716 Msa0555450:intron 25.0%
! ATAGGAGTAGAAATTGAAAT+AGG + chr4_1:53449796-53449815 Msa0555450:intron 25.0%
! TAGTAAAAATTGAGTACACT+AGG + chr4_1:53450049-53450068 Msa0555450:intron 25.0%
! GAAAAAGTTTAGTTGGATTT+GGG + chr4_1:53450184-53450203 Msa0555450:intron 25.0%
! AAACAATTTGTCCATTCAAT+TGG + chr4_1:53450346-53450365 Msa0555450:intron 25.0%
!! AGATTAGTTACATAAGATAC+AGG - chr4_1:53450798-53450817 None:intergenic 25.0%
!!! ATAATGCATTGATTGTTTCT+TGG + chr4_1:53450998-53451017 Msa0555450:intron 25.0%
! AGTTTGGTTATATCACTTAT+TGG + chr4_1:53451043-53451062 Msa0555450:intron 25.0%
! GTTACATTATACTTCTATCT+AGG + chr4_1:53451097-53451116 Msa0555450:intron 25.0%
! TCTATGGTTATACTATATCA+AGG + chr4_1:53451537-53451556 Msa0555450:three_prime_UTR 25.0%
!!! AAATACTTGTTGGCATATTT+TGG + chr4_1:53451583-53451602 Msa0555450:three_prime_UTR 25.0%
ATAACAAAAATCACGGTGTA+AGG - chr4_1:53448634-53448653 None:intergenic 30.0%
! ATTTTCCATTCTATGGCTTT+AGG + chr4_1:53448847-53448866 Msa0555450:intron 30.0%
AGTTTACATTATTTGAAGGC+GGG + chr4_1:53448982-53449001 Msa0555450:intron 30.0%
TAATTTGGCATAGTAGGATT+CGG + chr4_1:53449161-53449180 Msa0555450:intron 30.0%
TCACAATAAAAAACCACAAG+GGG - chr4_1:53449243-53449262 None:intergenic 30.0%
!! TTTTGTTTGTCCAAAGCAAA+AGG - chr4_1:53449315-53449334 None:intergenic 30.0%
TCAGAAAAGGCTATAATGTT+TGG + chr4_1:53449349-53449368 Msa0555450:intron 30.0%
AAATGAAAAGAGATGGAATG+TGG + chr4_1:53449374-53449393 Msa0555450:intron 30.0%
TGAATCCATGAAAAGAATAG+AGG + chr4_1:53449448-53449467 Msa0555450:intron 30.0%
! TAGAACCTCTATTCTTTTCA+TGG - chr4_1:53449456-53449475 None:intergenic 30.0%
ATAGGAGGAAAGAAAAAGTT+AGG + chr4_1:53449814-53449833 Msa0555450:intron 30.0%
AAGAAAAAGTTAGGTTTGAC+TGG + chr4_1:53449823-53449842 Msa0555450:intron 30.0%
AGAAAAAGTTAGGTTTGACT+GGG + chr4_1:53449824-53449843 Msa0555450:intron 30.0%
TAAAAATTGAGTACACTAGG+AGG + chr4_1:53450052-53450071 Msa0555450:intron 30.0%
GTAACTGATCGTTTAGTTAT+TGG + chr4_1:53450109-53450128 Msa0555450:intron 30.0%
CGAAAAAGTTTAGTTGGATT+TGG + chr4_1:53450183-53450202 Msa0555450:intron 30.0%
GTACATCAATACCAATTGAA+TGG - chr4_1:53450360-53450379 None:intergenic 30.0%
TTAGTGAACACAAGTTTCAT+TGG - chr4_1:53450405-53450424 None:intergenic 30.0%
! GGCTATAATGTTTGGTTTAA+TGG + chr4_1:53450433-53450452 Msa0555450:intron 30.0%
! TTTGGTTTAATGGAAAGAGA+TGG + chr4_1:53450443-53450462 Msa0555450:intron 30.0%
TAATGGAAAGAGATGGAATA+TGG + chr4_1:53450450-53450469 Msa0555450:intron 30.0%
AATGGAAAGAGATGGAATAT+GGG + chr4_1:53450451-53450470 Msa0555450:intron 30.0%
!! TCTCTTCAACTATTTCTACA+CGG - chr4_1:53450625-53450644 None:intergenic 30.0%
! TCTTTTCAATTGCTCAACAT+GGG - chr4_1:53450673-53450692 None:intergenic 30.0%
! TTCTTTTCAATTGCTCAACA+TGG - chr4_1:53450674-53450693 None:intergenic 30.0%
ACAAGAGACAAATAGTAAGA+AGG + chr4_1:53450726-53450745 Msa0555450:intron 30.0%
AGAGTAGAAGTTGAAATACA+AGG + chr4_1:53450833-53450852 Msa0555450:intron 30.0%
GAGTAGAAGTTGAAATACAA+GGG + chr4_1:53450834-53450853 Msa0555450:intron 30.0%
AAGTTGAAATACAAGGGAAA+GGG + chr4_1:53450840-53450859 Msa0555450:intron 30.0%
TATAACCAAACTAGTAACAG+AGG - chr4_1:53451035-53451054 None:intergenic 30.0%
! AAACTAGGCTCAATTGTTTT+TGG + chr4_1:53451125-53451144 Msa0555450:intron 30.0%
!!! TTGTTTTTGGTTAATCTTGC+AGG + chr4_1:53451138-53451157 Msa0555450:intron 30.0%
TGGGTATATGAATATTGCAA+TGG + chr4_1:53451179-53451198 Msa0555450:CDS 30.0%
AGAGGAATCCAAATATATGT+TGG + chr4_1:53451414-53451433 Msa0555450:three_prime_UTR 30.0%
! ACTTTTTGTATTATGTGGAC+CGG + chr4_1:53451461-53451480 Msa0555450:intron 30.0%
! TTTTTACCTCATGTTTGTCA+TGG + chr4_1:53451504-53451523 Msa0555450:three_prime_UTR 30.0%
TCATGGTAATTGAGTTTCTA+TGG + chr4_1:53451521-53451540 Msa0555450:three_prime_UTR 30.0%
ACAAGTATTTAACAAAGTGG+CGG - chr4_1:53451573-53451592 None:intergenic 30.0%
CCAACAAGTATTTAACAAAG+TGG - chr4_1:53451576-53451595 None:intergenic 30.0%
CCACTTTGTTAAATACTTGT+TGG + chr4_1:53451573-53451592 Msa0555450:three_prime_UTR 30.0%
!!! CAGAATGTTTTAGCTTAGTT+TGG + chr4_1:53451606-53451625 Msa0555450:three_prime_UTR 30.0%
!! AAGTTTTTGAGCATGAGTGA+GGG - chr4_1:53448480-53448499 None:intergenic 35.0%
!! TAAGTTTTTGAGCATGAGTG+AGG - chr4_1:53448481-53448500 None:intergenic 35.0%
AAGAAAGAAGAAAGGATGAG+TGG + chr4_1:53448690-53448709 Msa0555450:exon 35.0%
!! TTAGGTCACTTTGGAATTTG+TGG + chr4_1:53448865-53448884 Msa0555450:intron 35.0%
! AAGTTTAGGTTCACATTCCT+AGG + chr4_1:53448899-53448918 Msa0555450:intron 35.0%
ATTCCTAGGTCACAGTAATT+TGG + chr4_1:53448913-53448932 Msa0555450:intron 35.0%
CCTACTATGCCAAATTATGT+GGG - chr4_1:53449158-53449177 None:intergenic 35.0%
TCCTACTATGCCAAATTATG+TGG - chr4_1:53449159-53449178 None:intergenic 35.0%
! TTCGGACAAGAGAATTTTAG+AGG + chr4_1:53449179-53449198 Msa0555450:intron 35.0%
GCACATCAACACTAATTGAA+TGG - chr4_1:53449283-53449302 None:intergenic 35.0%
!! TCAATTAGTGTTGATGTGCA+TGG + chr4_1:53449284-53449303 Msa0555450:intron 35.0%
! TGCTTTGGACAAACAAAACT+TGG + chr4_1:53449317-53449336 Msa0555450:intron 35.0%
! GCTTTGGACAAACAAAACTT+GGG + chr4_1:53449318-53449337 Msa0555450:intron 35.0%
TTGGGTTCACTAATCAGAAA+AGG + chr4_1:53449336-53449355 Msa0555450:intron 35.0%
! CTTTTCAACTGCTAAAAGCA+GGG - chr4_1:53449639-53449658 None:intergenic 35.0%
! TCTTTTCAACTGCTAAAAGC+AGG - chr4_1:53449640-53449659 None:intergenic 35.0%
! TAGTAAGAAAGGAGTACACT+AGG + chr4_1:53449708-53449727 Msa0555450:intron 35.0%
TACACTAGGAGAAATAAGCA+TGG + chr4_1:53449722-53449741 Msa0555450:intron 35.0%
GGAGTAGAAATTGAAATAGG+AGG + chr4_1:53449799-53449818 Msa0555450:intron 35.0%
GAAAAAGTTAGGTTTGACTG+GGG + chr4_1:53449825-53449844 Msa0555450:intron 35.0%
TACCATTTCATCTTCAACCA+TGG + chr4_1:53449888-53449907 Msa0555450:intron 35.0%
ACCATTTCATCTTCAACCAT+GGG + chr4_1:53449889-53449908 Msa0555450:intron 35.0%
ACCAGAGTAGTATCACATAT+TGG + chr4_1:53449921-53449940 Msa0555450:intron 35.0%
ACCAATATGTGATACTACTC+TGG - chr4_1:53449925-53449944 None:intergenic 35.0%
GTAGTATCACATATTGGTGT+AGG + chr4_1:53449927-53449946 Msa0555450:intron 35.0%
! TATTGGCTAAGAGTAAAAGC+TGG + chr4_1:53450126-53450145 Msa0555450:intron 35.0%
CTAAGAGTAAAAGCTGGAAT+AGG + chr4_1:53450132-53450151 Msa0555450:intron 35.0%
GAGGAACGAAAAAGTTTAGT+TGG + chr4_1:53450177-53450196 Msa0555450:intron 35.0%
ATCACTTCATCTTCTACCAT+TGG + chr4_1:53450248-53450267 Msa0555450:intron 35.0%
!! ACAAGTTGCACTTTTTGCTT+TGG + chr4_1:53450378-53450397 Msa0555450:intron 35.0%
!! CAAGTTGCACTTTTTGCTTT+GGG + chr4_1:53450379-53450398 Msa0555450:intron 35.0%
! CTTTTCAATTGCTCAACATG+GGG - chr4_1:53450672-53450691 None:intergenic 35.0%
GAAGTTGAAATACAAGGGAA+AGG + chr4_1:53450839-53450858 Msa0555450:intron 35.0%
AGTAGAGCTTGAAAGAAACT+TGG + chr4_1:53450868-53450887 Msa0555450:intron 35.0%
GTAGAGCTTGAAAGAAACTT+GGG + chr4_1:53450869-53450888 Msa0555450:intron 35.0%
!! AAAGAAACTTGGGTTGGATT+GGG + chr4_1:53450879-53450898 Msa0555450:intron 35.0%
ATCACTTCATCTAACACCAT+TGG + chr4_1:53450946-53450965 Msa0555450:intron 35.0%
GTTAACCTCTGTTACTAGTT+TGG + chr4_1:53451027-53451046 Msa0555450:intron 35.0%
GGTTATATCACTTATTGGTG+TGG + chr4_1:53451048-53451067 Msa0555450:intron 35.0%
TATCACTTATTGGTGTGGAT+TGG + chr4_1:53451053-53451072 Msa0555450:intron 35.0%
TCTATCTAGGTACACAAACT+AGG + chr4_1:53451110-53451129 Msa0555450:intron 35.0%
TATTGCAATGGAACAAACAG+AGG + chr4_1:53451191-53451210 Msa0555450:CDS 35.0%
! CAAACAGAGGAGTATGTTAA+TGG + chr4_1:53451204-53451223 Msa0555450:CDS 35.0%
GTTTCAGACAAATAGGTAAC+CGG - chr4_1:53451483-53451502 None:intergenic 35.0%
CAATTACCATGACAAACATG+AGG - chr4_1:53451513-53451532 None:intergenic 35.0%
ATGAGTGGAACAGAGAAAAG+TGG + chr4_1:53448705-53448724 Msa0555450:CDS 40.0%
ATGGATTTGAGGAAATCAGC+TGG - chr4_1:53448750-53448769 None:intergenic 40.0%
GATTTCCTCAAATCCATTCG+TGG + chr4_1:53448753-53448772 Msa0555450:CDS 40.0%
AGTGACCTAAAGCCATAGAA+TGG - chr4_1:53448855-53448874 None:intergenic 40.0%
!! TCTATGGCTTTAGGTCACTT+TGG + chr4_1:53448856-53448875 Msa0555450:intron 40.0%
CAACCAAATTACTGTGACCT+AGG - chr4_1:53448919-53448938 None:intergenic 40.0%
TTTAAACTCGGTATGGTCCA+AGG + chr4_1:53449060-53449079 Msa0555450:intron 40.0%
!! ATGGACTAGCCCACATAATT+TGG + chr4_1:53449146-53449165 Msa0555450:intron 40.0%
CCCACATAATTTGGCATAGT+AGG + chr4_1:53449155-53449174 Msa0555450:intron 40.0%
!! TTTTAGAGGAGCACACTCTA+AGG + chr4_1:53449193-53449212 Msa0555450:intron 40.0%
! CATGGTTACACCTTTTGCTT+TGG + chr4_1:53449302-53449321 Msa0555450:intron 40.0%
TGAAAAGAGATGGAATGTGG+TGG + chr4_1:53449377-53449396 Msa0555450:intron 40.0%
GAGAAATAAGCATGGAACAG+AGG + chr4_1:53449730-53449749 Msa0555450:intron 40.0%
TCCCATGGTTGAAGATGAAA+TGG - chr4_1:53449893-53449912 None:intergenic 40.0%
ATGTGATACTACTCTGGTCA+AGG - chr4_1:53449919-53449938 None:intergenic 40.0%
CTGCAATCACAGAATAGCTA+CGG + chr4_1:53449967-53449986 Msa0555450:intron 40.0%
ATCACAGAATAGCTACGGAA+AGG + chr4_1:53449972-53449991 Msa0555450:intron 40.0%
AGCTAAAAATGTTGCACCAG+AGG - chr4_1:53449999-53450018 None:intergenic 40.0%
ATTGAGTACACTAGGAGGAA+TGG + chr4_1:53450057-53450076 Msa0555450:intron 40.0%
GAGTAAAAGCTGGAATAGGA+AGG + chr4_1:53450136-53450155 Msa0555450:intron 40.0%
AAGCTGGAATAGGAAGGAAA+TGG + chr4_1:53450142-53450161 Msa0555450:intron 40.0%
AGCTGGAATAGGAAGGAAAT+GGG + chr4_1:53450143-53450162 Msa0555450:intron 40.0%
TTGGATTTGGGAGATCATCA+GGG + chr4_1:53450196-53450215 Msa0555450:intron 40.0%
GTGATATTAGTGATCCTCCA+TGG - chr4_1:53450233-53450252 None:intergenic 40.0%
TTGTGTTCACTAACCAGCAA+TGG + chr4_1:53450412-53450431 Msa0555450:intron 40.0%
CCAAACATTATAGCCATTGC+TGG - chr4_1:53450428-53450447 None:intergenic 40.0%
CCAGCAATGGCTATAATGTT+TGG + chr4_1:53450425-53450444 Msa0555450:intron 40.0%
TAAGAAGGTAGTAGTACGCT+AGG + chr4_1:53450741-53450760 Msa0555450:intron 40.0%
AGCTTGAAAGAAACTTGGGT+TGG + chr4_1:53450873-53450892 Msa0555450:intron 40.0%
!! GAAAGAAACTTGGGTTGGAT+TGG + chr4_1:53450878-53450897 Msa0555450:intron 40.0%
!! AAGAAACTTGGGTTGGATTG+GGG + chr4_1:53450880-53450899 Msa0555450:intron 40.0%
TTATTCCAGAGCTACCACTT+TGG - chr4_1:53450982-53451001 None:intergenic 40.0%
! GTATCCTAGCTTGTCTAGAT+GGG + chr4_1:53451160-53451179 Msa0555450:CDS 40.0%
TATACCCATCTAGACAAGCT+AGG - chr4_1:53451167-53451186 None:intergenic 40.0%
! TATGGTGATGCATTCATTCG+AGG + chr4_1:53451243-53451262 Msa0555450:CDS 40.0%
! ATGGTGATGCATTCATTCGA+GGG + chr4_1:53451244-53451263 Msa0555450:CDS 40.0%
GCATTCATTCGAGGGAATAA+TGG + chr4_1:53451252-53451271 Msa0555450:CDS 40.0%
TGTACATCAGTACCTCAAAG+AGG + chr4_1:53451368-53451387 Msa0555450:CDS 40.0%
TTTGAGCATGAGTGAGGGTT+TGG - chr4_1:53448475-53448494 None:intergenic 45.0%
AGGTACCTTTGCAGCGATAT+GGG - chr4_1:53448543-53448562 None:intergenic 45.0%
! AAGGTACCTTTGCAGCGATA+TGG - chr4_1:53448544-53448563 None:intergenic 45.0%
GGAACAGAGAAAAGTGGTTC+AGG + chr4_1:53448711-53448730 Msa0555450:CDS 45.0%
! GAGGAAATCAGCTGGAGTTT+TGG - chr4_1:53448742-53448761 None:intergenic 45.0%
! GTCTACCACGAATGGATTTG+AGG - chr4_1:53448761-53448780 None:intergenic 45.0%
GAGTTGAGCTTAACAACCAC+AGG - chr4_1:53448783-53448802 None:intergenic 45.0%
GTGGTTGTTAAGCTCAACTC+TGG + chr4_1:53448783-53448802 Msa0555450:CDS 45.0%
!! AACTCTGGTGTTGACTATCG+AGG + chr4_1:53448798-53448817 Msa0555450:CDS 45.0%
!! CATTATTTGAAGGCGGGTTG+TGG + chr4_1:53448988-53449007 Msa0555450:intron 45.0%
! CTTTAATTTCCCCTGGACAG+TGG - chr4_1:53449109-53449128 None:intergenic 45.0%
!! GCTTTGGCTTTAATTTCCCC+TGG - chr4_1:53449116-53449135 None:intergenic 45.0%
AGCCAAAGCTAAGCTCTGTA+TGG + chr4_1:53449127-53449146 Msa0555450:intron 45.0%
GTCCATACAGAGCTTAGCTT+TGG - chr4_1:53449132-53449151 None:intergenic 45.0%
ATGGTATGAGTCATCGTCCA+AGG - chr4_1:53449874-53449893 None:intergenic 45.0%
GCTATTCTGTGATTGCAGCA+TGG - chr4_1:53449965-53449984 None:intergenic 45.0%
GCTGGAATAGGAAGGAAATG+GGG + chr4_1:53450144-53450163 Msa0555450:intron 45.0%
AGGAAGGAAATGGGGTATAG+TGG + chr4_1:53450152-53450171 Msa0555450:intron 45.0%
AAGGAAATGGGGTATAGTGG+AGG + chr4_1:53450155-53450174 Msa0555450:intron 45.0%
GTTGGATTTGGGAGATCATC+AGG + chr4_1:53450195-53450214 Msa0555450:intron 45.0%
CTCTGGTCAAGGAAATCCAA+TGG - chr4_1:53450267-53450286 None:intergenic 45.0%
TTGGATTTCCTTGACCAGAG+TGG + chr4_1:53450267-53450286 Msa0555450:intron 45.0%
!! TTGGATTGGGGAGAGTATCA+GGG + chr4_1:53450892-53450911 Msa0555450:intron 45.0%
CTTTGGTCAAGGAGATCCAA+TGG - chr4_1:53450965-53450984 None:intergenic 45.0%
TTGGATCTCCTTGACCAAAG+TGG + chr4_1:53450965-53450984 Msa0555450:intron 45.0%
! GGTATCCTAGCTTGTCTAGA+TGG + chr4_1:53451159-53451178 Msa0555450:intron 45.0%
GGACAGCTGAAGAACAAGTA+TGG + chr4_1:53451225-53451244 Msa0555450:CDS 45.0%
TTCTGCTAGAGTCCTCTTTG+AGG - chr4_1:53451383-53451402 None:intergenic 45.0%
TCAAAGAGGACTCTAGCAGA+AGG + chr4_1:53451382-53451401 Msa0555450:CDS 45.0%
CAAAGAGGACTCTAGCAGAA+GGG + chr4_1:53451383-53451402 Msa0555450:CDS 45.0%
AAAGAGGACTCTAGCAGAAG+GGG + chr4_1:53451384-53451403 Msa0555450:CDS 45.0%
AATCGAAAACGAGGCGCGAT+AGG - chr4_1:53448514-53448533 None:intergenic 50.0%
AGCGAGAAGAGAAGACGAGA+AGG - chr4_1:53448563-53448582 None:intergenic 50.0%
ATCCATTCGTGGTAGACCTG+TGG + chr4_1:53448764-53448783 Msa0555450:CDS 50.0%
AACCACAGGTCTACCACGAA+TGG - chr4_1:53448769-53448788 None:intergenic 50.0%
GAATTGGTCCCCGGATAAGT+CGG - chr4_1:53449087-53449106 None:intergenic 50.0%
TTTCCCCTGGACAGTGGAAT+TGG - chr4_1:53449103-53449122 None:intergenic 50.0%
GGTTCCTAGCCTACACAATC+AGG + chr4_1:53449214-53449233 Msa0555450:intron 50.0%
GTTGCCTGATTGTGTAGGCT+AGG - chr4_1:53449221-53449240 None:intergenic 50.0%
AAGGGGTTGCCTGATTGTGT+AGG - chr4_1:53449226-53449245 None:intergenic 50.0%
AGTTAGGTTTGACTGGGGAG+AGG + chr4_1:53449830-53449849 Msa0555450:intron 50.0%
TTTGACTGGGGAGAGGATCA+GGG + chr4_1:53449837-53449856 Msa0555450:intron 50.0%
TCAGGGTCTCTCAAACACCT+TGG + chr4_1:53449854-53449873 Msa0555450:intron 50.0%
ATAGCTACGGAAAGGACCTC+TGG + chr4_1:53449980-53449999 Msa0555450:intron 50.0%
CACTAGGAGGAATGGCACAT+AGG + chr4_1:53450065-53450084 Msa0555450:intron 50.0%
! GAAATGGGGTATAGTGGAGG+AGG + chr4_1:53450158-53450177 Msa0555450:intron 50.0%
TCAGGGTCTCTTGAACACCA+TGG + chr4_1:53450213-53450232 Msa0555450:intron 50.0%
TAGAGCTACCACTCTGGTCA+AGG - chr4_1:53450278-53450297 None:intergenic 50.0%
!! ACCAGAGTGGTAGCTCTAGA+AGG + chr4_1:53450280-53450299 Msa0555450:intron 50.0%
!! ACCTTCTAGAGCTACCACTC+TGG - chr4_1:53450284-53450303 None:intergenic 50.0%
!! GTTGGATTGGGGAGAGTATC+AGG + chr4_1:53450891-53450910 Msa0555450:intron 50.0%
TCCCTCTAACACCTTGGAGA+GGG + chr4_1:53450915-53450934 Msa0555450:intron 50.0%
! ACCCTCTCCAAGGTGTTAGA+GGG - chr4_1:53450919-53450938 None:intergenic 50.0%
GATAAGAGTCACCCTCTCCA+AGG - chr4_1:53450929-53450948 None:intergenic 50.0%
CAGAGCTACCACTTTGGTCA+AGG - chr4_1:53450976-53450995 None:intergenic 50.0%
CTTGACCAAAGTGGTAGCTC+TGG + chr4_1:53450974-53450993 Msa0555450:intron 50.0%
AGCAGAAGGGGCTTAAACAG+AGG + chr4_1:53451396-53451415 Msa0555450:exon 50.0%
GGGTCGCGAAATCGAAAACG+AGG - chr4_1:53448523-53448542 None:intergenic 55.0%
! GGTCCAAGGACCGACTTATC+CGG + chr4_1:53449074-53449093 Msa0555450:intron 55.0%
! GTCCAAGGACCGACTTATCC+GGG + chr4_1:53449075-53449094 Msa0555450:intron 55.0%
! TCCAAGGACCGACTTATCCG+GGG + chr4_1:53449076-53449095 Msa0555450:intron 55.0%
TGGACAGTGGAATTGGTCCC+CGG - chr4_1:53449096-53449115 None:intergenic 55.0%
GGGACCAATTCCACTGTCCA+GGG + chr4_1:53449096-53449115 Msa0555450:intron 55.0%
GGACCAATTCCACTGTCCAG+GGG + chr4_1:53449097-53449116 Msa0555450:intron 55.0%
CACAATCAGGCAACCCCTTG+TGG + chr4_1:53449227-53449246 Msa0555450:intron 55.0%
GTTTGACTGGGGAGAGGATC+AGG + chr4_1:53449836-53449855 Msa0555450:intron 55.0%
CTCTGGTCAAGGAGATCCCA+TGG - chr4_1:53449908-53449927 None:intergenic 55.0%
GGGTCTCTTGAACACCATGG+AGG + chr4_1:53450216-53450235 Msa0555450:intron 55.0%
TCAGGGTCCCTCTAACACCT+TGG + chr4_1:53450909-53450928 Msa0555450:intron 55.0%
GTCCCTCTAACACCTTGGAG+AGG + chr4_1:53450914-53450933 Msa0555450:intron 55.0%
! CACCCTCTCCAAGGTGTTAG+AGG - chr4_1:53450920-53450939 None:intergenic 55.0%
ACGAGGCGCGATAGGAGAGA+AGG - chr4_1:53448506-53448525 None:intergenic 60.0%
CGCGACCCATATCGCTGCAA+AGG + chr4_1:53448535-53448554 Msa0555450:five_prime_UTR 60.0%
TCCCCGGATAAGTCGGTCCT+TGG - chr4_1:53449080-53449099 None:intergenic 60.0%
GGGGACCAATTCCACTGTCC+AGG + chr4_1:53449095-53449114 Msa0555450:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53448420 53451682 53448420 ID=Msa0555450;Name=Msa0555450
chr4_1 mRNA 53448420 53451682 53448420 ID=Msa0555450-mRNA-1;Parent=Msa0555450;Name=Msa0555450-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|0.5|0.2|5|230|91
chr4_1 exon 53448420 53448556 53448420 ID=Msa0555450-mRNA-1:exon:15504;Parent=Msa0555450-mRNA-1
chr4_1 exon 53448668 53448819 53448668 ID=Msa0555450-mRNA-1:exon:15505;Parent=Msa0555450-mRNA-1
chr4_1 exon 53451160 53451273 53451160 ID=Msa0555450-mRNA-1:exon:15506;Parent=Msa0555450-mRNA-1
chr4_1 exon 53451365 53451442 53451365 ID=Msa0555450-mRNA-1:exon:15507;Parent=Msa0555450-mRNA-1
chr4_1 exon 53451484 53451682 53451484 ID=Msa0555450-mRNA-1:exon:15508;Parent=Msa0555450-mRNA-1
chr4_1 five_prime_UTR 53448420 53448556 53448420 ID=Msa0555450-mRNA-1:five_prime_utr;Parent=Msa0555450-mRNA-1
chr4_1 five_prime_UTR 53448668 53448704 53448668 ID=Msa0555450-mRNA-1:five_prime_utr;Parent=Msa0555450-mRNA-1
chr4_1 CDS 53448705 53448819 53448705 ID=Msa0555450-mRNA-1:cds;Parent=Msa0555450-mRNA-1
chr4_1 CDS 53451160 53451273 53451160 ID=Msa0555450-mRNA-1:cds;Parent=Msa0555450-mRNA-1
chr4_1 CDS 53451365 53451411 53451365 ID=Msa0555450-mRNA-1:cds;Parent=Msa0555450-mRNA-1
chr4_1 three_prime_UTR 53451412 53451442 53451412 ID=Msa0555450-mRNA-1:three_prime_utr;Parent=Msa0555450-mRNA-1
chr4_1 three_prime_UTR 53451484 53451682 53451484 ID=Msa0555450-mRNA-1:three_prime_utr;Parent=Msa0555450-mRNA-1
Gene Sequence

>Msa0555450

ATGAGTGGAACAGAGAAAAGTGGTTCAGGAACAACCAAAACTCCAGCTGATTTCCTCAAATCCATTCGTGGTAGACCTGTGGTTGTTAAGCTCAACTCTGGTGTTGACTATCGAGGTATCCTAGCTTGTCTAGATGGGTATATGAATATTGCAATGGAACAAACAGAGGAGTATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTTTGTACATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAA

Protein sequence

>Msa0555450

MSGTEKSGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*