AlfalfaGEDB | Msa1168580

M. sativa cultivar zhongmu-4 / Msa1168580

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1168580	0.808925	2.437103e-50	-8.615850e-47
Msa0003890	Msa1168580	0.811925	5.486425e-51	-8.615850e-47
Msa0006110	Msa1168580	0.811749	5.991301e-51	-8.615850e-47
Msa0007440	Msa1168580	0.820072	8.322161e-53	-8.615850e-47
Msa0010110	Msa1168580	0.806850	6.731502e-50	-8.615850e-47
Msa0011660	Msa1168580	-0.813349	2.677395e-51	-8.615850e-47
Msa0011960	Msa1168580	0.812599	3.909037e-51	-8.615850e-47
Msa0015390	Msa1168580	0.801912	7.198857e-49	-8.615850e-47
Msa0020390	Msa1168580	0.815278	1.003559e-51	-8.615850e-47
Msa0020410	Msa1168580	0.831010	2.126637e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 18 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATTTCACATACAACCAGT+AGG	0.664111	7_4:+61271059	None:intergenic
ACTACATTCAACACATCTAA+TGG	0.405290	7_4:+61272192	None:intergenic
AGATGTTTGCTTACACGAAA+AGG	0.412363	7_4:-61271210	Msa1168580:CDS
AGATGTTTGTGTACATGCAA+AGG	0.512617	7_4:-61271161	Msa1168580:CDS
ATGTACAAGTGTACAACTAG+TGG	0.638951	7_4:-61271913	Msa1168580:intron
CGAAAAGGGTTCTGGATTGT+CGG	0.442985	7_4:-61271195	Msa1168580:CDS
GAATACTATAGTCTTCCTAC+TGG	0.533058	7_4:-61271074	Msa1168580:CDS
GATGTTTGCTTACACGAAAA+GGG	0.458466	7_4:-61271209	Msa1168580:CDS
GATGTTTGTGTACATGCAAA+GGG	0.475084	7_4:-61271160	Msa1168580:CDS
GGACATCATCTACAAGAACA+AGG	0.666572	7_4:-61271883	Msa1168580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTACATTCAACACATCTAA+TGG	+	chr7_4:61271027-61271046	None:intergenic	30.0%
CGACAAACAAAAATGCTATA+GGG	+	chr7_4:61271264-61271283	None:intergenic	30.0%
TATGTATAGAATCATCTTGC+AGG	-	chr7_4:61271498-61271517	Msa1168580:intron	30.0%
ATGTATAGAATCATCTTGCA+GGG	-	chr7_4:61271499-61271518	Msa1168580:intron	30.0%
CAACAATGAATTTCAACACT+TGG	+	chr7_4:61271635-61271654	None:intergenic	30.0%
TAGTAATCAGAGTCAAAACT+TGG	-	chr7_4:61271867-61271886	Msa1168580:CDS	30.0%
TTTCCTTTAACTCATAGCTT+TGG	-	chr7_4:61271962-61271981	Msa1168580:intron	30.0%
TTCCTTTAACTCATAGCTTT+GGG	-	chr7_4:61271963-61271982	Msa1168580:intron	30.0%
TGTGAAATGTTTCTTCTTGA+AGG	-	chr7_4:61272170-61272189	Msa1168580:CDS	30.0%
GTGAAATGTTTCTTCTTGAA+GGG	-	chr7_4:61272171-61272190	Msa1168580:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	61271021	61272217	61271021	ID=Msa1168580;Name=Msa1168580
chr7_4	mRNA	61271021	61272217	61271021	ID=Msa1168580-mRNA-1;Parent=Msa1168580;Name=Msa1168580-mRNA-1;_AED=0.88;_eAED=0.88;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|123
chr7_4	exon	61272137	61272217	61272137	ID=Msa1168580-mRNA-1:exon:19373;Parent=Msa1168580-mRNA-1
chr7_4	exon	61271846	61271926	61271846	ID=Msa1168580-mRNA-1:exon:19372;Parent=Msa1168580-mRNA-1
chr7_4	exon	61271021	61271230	61271021	ID=Msa1168580-mRNA-1:exon:19371;Parent=Msa1168580-mRNA-1
chr7_4	CDS	61272137	61272217	61272137	ID=Msa1168580-mRNA-1:cds;Parent=Msa1168580-mRNA-1
chr7_4	CDS	61271846	61271926	61271846	ID=Msa1168580-mRNA-1:cds;Parent=Msa1168580-mRNA-1
chr7_4	CDS	61271021	61271230	61271021	ID=Msa1168580-mRNA-1:cds;Parent=Msa1168580-mRNA-1

Gene Sequence	>Msa1168580 ATGCCATTAGATGTGTTGAATGTAGTTCGCCTCAAGGCTAAAATAGTTCTTGTGTATATTCTAAATGAGGATGCTTCATATTGTACAACTAGTGGCATAAATGGACATCATCTACAAGAACAAGGAAATGCACTTGAATCTGCAAGAACTTGCAAAATTGTTATGTTTGCTTACACGAAAAGGGTTCTGGATTGTCGGTTTTCATGTATAGATGTTTGTGTACATGCAAAGGGTTCAACTGAAGAAGATCAGAGGGATATAAACAGTGTGCAAATGAATCTTGATTTCAGTTTAATGAATACTATAGTCTTCCTACTGGTTGTATGTGAAATGTTTCTTCTTGAAGGGATAAATGTAGTATACTATTATTAA
Protein sequence	>Msa1168580 MPLDVLNVVRLKAKIVLVYILNEDASYCTTSGINGHHLQEQGNALESARTCKIVMFAYTKRVLDCRFSCIDVCVHAKGSTEEDQRDINSVQMNLDFSLMNTIVFLLVVCEMFLLEGINVVYYY*