Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947400 | A0A072U8C6 | 83.992 | 506 | 27 | 7 | 1 | 457 | 1 | 501 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003450 | Msa0947400 | 0.809219 | 2.108304e-50 | -8.615850e-47 |
| Msa0063850 | Msa0947400 | 0.807752 | 4.336039e-50 | -8.615850e-47 |
| Msa0072710 | Msa0947400 | 0.803100 | 4.094571e-49 | -8.615850e-47 |
| Msa0078080 | Msa0947400 | 0.806104 | 9.670512e-50 | -8.615850e-47 |
| Msa0079550 | Msa0947400 | 0.820324 | 7.282828e-53 | -8.615850e-47 |
| Msa0114960 | Msa0947400 | 0.847008 | 1.517682e-59 | -8.615850e-47 |
| Msa0120310 | Msa0947400 | 0.858967 | 5.727344e-63 | -8.615850e-47 |
| Msa0607620 | Msa0947400 | 0.800933 | 1.142249e-48 | -8.615850e-47 |
| Msa0614060 | Msa0947400 | 0.800376 | 1.483706e-48 | -8.615850e-47 |
| Msa0639880 | Msa0947400 | 0.824625 | 7.294408e-54 | -8.615850e-47 |
| Msa0647860 | Msa0947400 | 0.803751 | 3.002169e-49 | -8.615850e-47 |
| Msa0649530 | Msa0947400 | 0.804595 | 2.003478e-49 | -8.615850e-47 |
| Msa0665010 | Msa0947400 | 0.819201 | 1.315302e-52 | -8.615850e-47 |
| Msa0674680 | Msa0947400 | 0.808810 | 2.579626e-50 | -8.615850e-47 |
| Msa0690580 | Msa0947400 | 0.822618 | 2.150884e-53 | -8.615850e-47 |
| Msa0690920 | Msa0947400 | 0.800547 | 1.369211e-48 | -8.615850e-47 |
| Msa0697230 | Msa0947400 | 0.828229 | 1.009573e-54 | -8.615850e-47 |
| Msa0704750 | Msa0947400 | 0.802397 | 5.721151e-49 | -8.615850e-47 |
| Msa0197600 | Msa0947400 | 0.800446 | 1.436059e-48 | -8.615850e-47 |
| Msa0198140 | Msa0947400 | 0.806898 | 6.577723e-50 | -8.615850e-47 |
| Msa0198220 | Msa0947400 | 0.807761 | 4.316958e-50 | -8.615850e-47 |
| Msa0206600 | Msa0947400 | 0.813262 | 2.797470e-51 | -8.615850e-47 |
| Msa0238420 | Msa0947400 | -0.803680 | 3.105114e-49 | -8.615850e-47 |
| Msa0370350 | Msa0947400 | 0.810824 | 9.512182e-51 | -8.615850e-47 |
| Msa0404880 | Msa0947400 | 0.805986 | 1.024099e-49 | -8.615850e-47 |
| Msa0413040 | Msa0947400 | 0.809761 | 1.612890e-50 | -8.615850e-47 |
| Msa0459920 | Msa0947400 | 0.802065 | 6.695116e-49 | -8.615850e-47 |
| Msa0468050 | Msa0947400 | -0.813765 | 2.168489e-51 | -8.615850e-47 |
| Msa0249670 | Msa0947400 | 0.810500 | 1.117853e-50 | -8.615850e-47 |
| Msa0251140 | Msa0947400 | 0.817319 | 3.508130e-52 | -8.615850e-47 |
| Msa0272420 | Msa0947400 | 0.800259 | 1.567556e-48 | -8.615850e-47 |
| Msa0278340 | Msa0947400 | 0.804231 | 2.385739e-49 | -8.615850e-47 |
| Msa0310260 | Msa0947400 | 0.806391 | 8.415195e-50 | -8.615850e-47 |
| Msa0312570 | Msa0947400 | 0.809091 | 2.245310e-50 | -8.615850e-47 |
| Msa0486210 | Msa0947400 | 0.802538 | 5.350666e-49 | -8.615850e-47 |
| Msa0492050 | Msa0947400 | 0.803615 | 3.203534e-49 | -8.615850e-47 |
| Msa0560010 | Msa0947400 | 0.806181 | 9.316349e-50 | -8.615850e-47 |
| Msa0587060 | Msa0947400 | 0.822679 | 2.082339e-53 | -8.615850e-47 |
| Msa0595240 | Msa0947400 | 0.802933 | 4.434896e-49 | -8.615850e-47 |
| Msa0882340 | Msa0947400 | 0.867116 | 1.734897e-65 | -8.615850e-47 |
| Msa0883880 | Msa0947400 | 0.806019 | 1.007736e-49 | -8.615850e-47 |
| Msa0911440 | Msa0947400 | 0.802264 | 6.092313e-49 | -8.615850e-47 |
| Msa0911490 | Msa0947400 | 0.805375 | 1.376244e-49 | -8.615850e-47 |
| Msa0947400 | Msa0967260 | 0.802783 | 4.761665e-49 | -8.615850e-47 |
| Msa0947400 | Msa0975180 | 0.806269 | 8.929630e-50 | -8.615850e-47 |
| Msa0947400 | Msa1081650 | 0.812069 | 5.103402e-51 | -8.615850e-47 |
| Msa0947400 | Msa1098470 | 0.814913 | 1.209307e-51 | -8.615850e-47 |
| Msa0947400 | Msa1182960 | 0.835498 | 1.620430e-56 | -8.615850e-47 |
| Msa0947400 | Msa1203840 | 0.804083 | 2.560506e-49 | -8.615850e-47 |
| Msa0947400 | Msa1227090 | 0.801005 | 1.104302e-48 | -8.615850e-47 |
| Msa0947400 | Msa1230190 | 0.813612 | 2.344167e-51 | -8.615850e-47 |
| Msa0947400 | Msa1252220 | 0.847059 | 1.468815e-59 | -8.615850e-47 |
| Msa0947400 | Msa1267800 | 0.811296 | 7.516673e-51 | -8.615850e-47 |
| Msa0947400 | Msa1272770 | 0.810333 | 1.214604e-50 | -8.615850e-47 |
| Msa0947400 | Msa1279240 | 0.801425 | 9.061468e-49 | -8.615850e-47 |
| Msa0947400 | Msa1285870 | 0.803146 | 4.007112e-49 | -8.615850e-47 |
| Msa0947400 | Msa1293030 | 0.810079 | 1.377803e-50 | -8.615850e-47 |
| Msa0947400 | Msa1316090 | 0.804274 | 2.337373e-49 | -8.615850e-47 |
| Msa0947400 | Msa1368800 | 0.812027 | 5.211558e-51 | -8.615850e-47 |
| Msa0947400 | Msa1395700 | 0.806741 | 7.098429e-50 | -8.615850e-47 |
| Msa0947400 | Msa1398310 | 0.810714 | 1.004587e-50 | -8.615850e-47 |
| Msa0947400 | Msa1412830 | 0.804131 | 2.502461e-49 | -8.615850e-47 |
| Msa0947400 | Msa1432250 | 0.812439 | 4.237722e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947400 | MtrunA17_Chr6g0461911 | 83.992 | 506 | 27 | 7 | 1 | 457 | 1 | 501 | 0.0 | 831 |
| Msa0947400 | MtrunA17_Chr7g0252291 | 66.667 | 489 | 107 | 7 | 17 | 456 | 9 | 490 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947400 | AT3G19340.1 | 64.924 | 459 | 126 | 7 | 28 | 457 | 34 | 486 | 0.0 | 593 |
| Msa0947400 | AT5G13940.2 | 54.324 | 451 | 170 | 7 | 32 | 453 | 175 | 618 | 1.13e-166 | 484 |
| Msa0947400 | AT5G13940.1 | 54.324 | 451 | 170 | 7 | 32 | 453 | 326 | 769 | 2.66e-164 | 484 |
Find 78 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTAATGTTGCACTTTC+TGG | 0.122280 | 6_3:+30051741 | Msa0947400:CDS |
| TGTTCACAAACTTGAGAAAT+TGG | 0.142121 | 6_3:+30054964 | Msa0947400:CDS |
| ACATGCTCATTGCACGTTTC+TGG | 0.178933 | 6_3:+30052216 | Msa0947400:CDS |
| ACTATGTCTCTTTGATCTTT+TGG | 0.196292 | 6_3:-30052414 | None:intergenic |
| CAAATGTCGGTTCTTGGATT+AGG | 0.249506 | 6_3:-30052657 | None:intergenic |
| ATAGGATCATTGTTGTTTAC+AGG | 0.249850 | 6_3:+30052680 | Msa0947400:CDS |
| TCTATCTATTGAACTTTGTT+AGG | 0.250041 | 6_3:-30055366 | None:intergenic |
| CATCACTGTTAATGAATCTA+AGG | 0.255872 | 6_3:+30051785 | Msa0947400:CDS |
| CCACTGAGGAGCTTGTAATT+AGG | 0.272195 | 6_3:+30055226 | Msa0947400:CDS |
| TCCTATCAAATGTCGGTTCT+TGG | 0.277732 | 6_3:-30052663 | None:intergenic |
| TCATATCTTCAAATTGTAAA+AGG | 0.292664 | 6_3:-30051181 | None:intergenic |
| AAACATCCCAATGGCCGATA+TGG | 0.293825 | 6_3:+30052968 | Msa0947400:CDS |
| ATGTACATTTCAATACTTAA+AGG | 0.300195 | 6_3:+30055313 | Msa0947400:three_prime_UTR |
| GCAGTTTCATCATCCTTCTT+TGG | 0.323420 | 6_3:-30052449 | None:intergenic |
| AAAAGAGCAAATGAGATAAT+TGG | 0.324696 | 6_3:+30055198 | Msa0947400:CDS |
| AAATGTCGGTTCTTGGATTA+GGG | 0.340976 | 6_3:-30052656 | None:intergenic |
| AACGACGGATTACTTTATAA+TGG | 0.353329 | 6_3:+30052184 | Msa0947400:CDS |
| CACTGAGGAGCTTGTAATTA+GGG | 0.365232 | 6_3:+30055227 | Msa0947400:CDS |
| ACACATTGATATCGTCCTAT+TGG | 0.371910 | 6_3:-30055168 | None:intergenic |
| ACAACTGATTTGAGGGTTAT+CGG | 0.386134 | 6_3:+30053477 | Msa0947400:CDS |
| CGGATCCGCTATTGTTGGAT+TGG | 0.390089 | 6_3:+30053341 | Msa0947400:CDS |
| ATGGATTGGGTGAAGTTTCT+CGG | 0.405084 | 6_3:+30053321 | Msa0947400:CDS |
| GTTCACAAACTTGAGAAATT+GGG | 0.412461 | 6_3:+30054965 | Msa0947400:CDS |
| ATCATATTTCGGCGTGGCAT+TGG | 0.417970 | 6_3:+30052152 | Msa0947400:CDS |
| TCTTCCAGATTTCTATGATA+AGG | 0.424218 | 6_3:+30051983 | Msa0947400:CDS |
| GTTGGAATTCAGGATCCAAT+AGG | 0.426492 | 6_3:+30055153 | Msa0947400:intron |
| ATTACCTTATCATAGAAATC+TGG | 0.430638 | 6_3:-30051987 | None:intergenic |
| AGCAGCTACAACTGATTTGA+GGG | 0.433861 | 6_3:+30053470 | Msa0947400:CDS |
| ATCAAGGAGTAATGTTTCCT+TGG | 0.439043 | 6_3:-30055254 | None:intergenic |
| CTATTTCCATATCGGCCATT+GGG | 0.441338 | 6_3:-30052974 | None:intergenic |
| TTTACAATTTGAAGATATGA+TGG | 0.443232 | 6_3:+30051184 | Msa0947400:CDS |
| CACAAGAACTATTTCCATAT+CGG | 0.443819 | 6_3:-30052982 | None:intergenic |
| TTTCTCGGATCCGCTATTGT+TGG | 0.450756 | 6_3:+30053336 | Msa0947400:CDS |
| AAGCAGCTACAACTGATTTG+AGG | 0.451016 | 6_3:+30053469 | Msa0947400:CDS |
| TGAATTAAGGAACTGGATCA+AGG | 0.457587 | 6_3:+30054881 | Msa0947400:intron |
| AATCAGTTGTAGCTGCTTGA+AGG | 0.465331 | 6_3:-30053464 | None:intergenic |
| CTTAGATTCATTAACAGTGA+TGG | 0.474728 | 6_3:-30051784 | None:intergenic |
| TCCAAGAACCGACATTTGAT+AGG | 0.489361 | 6_3:+30052662 | Msa0947400:CDS |
| ACTATTTCCATATCGGCCAT+TGG | 0.493110 | 6_3:-30052975 | None:intergenic |
| CTGGATTGACTCCAATGGAT+TGG | 0.499178 | 6_3:+30053307 | Msa0947400:CDS |
| TGGATTGACTCCAATGGATT+GGG | 0.499880 | 6_3:+30053308 | Msa0947400:CDS |
| AAATCTGGAAGATTATTAAA+CGG | 0.500190 | 6_3:-30051972 | None:intergenic |
| TTAGATTCATTAACAGTGAT+GGG | 0.504126 | 6_3:-30051783 | None:intergenic |
| GCTGTTCTTTCTACAGTAGT+CGG | 0.508253 | 6_3:+30053501 | Msa0947400:CDS |
| TAGAAATAACATGACCTCAA+TGG | 0.511163 | 6_3:-30052524 | None:intergenic |
| TTACTTTATAATGGAGAAAG+TGG | 0.514206 | 6_3:+30052193 | Msa0947400:CDS |
| CAATCCATTGGAGTCAATCC+AGG | 0.515695 | 6_3:-30053306 | None:intergenic |
| AGAAACTTCACCCAATCCAT+TGG | 0.517634 | 6_3:-30053318 | None:intergenic |
| CAGCCAGAAAAGAAAAGTCC+TGG | 0.519899 | 6_3:+30053288 | Msa0947400:intron |
| TCCGATTCAAAACCCGAAAG+AGG | 0.526782 | 6_3:+30052924 | Msa0947400:CDS |
| AAACAACTAGACAGTGGAAA+GGG | 0.533025 | 6_3:+30054316 | Msa0947400:CDS |
| ATCAGTTGTAGCTGCTTGAA+GGG | 0.536884 | 6_3:-30053463 | None:intergenic |
| GAAATTGGGAATTGTCACTA+AGG | 0.538207 | 6_3:+30054979 | Msa0947400:CDS |
| ATAGGACGATATCAATGTGT+TGG | 0.547411 | 6_3:+30055171 | Msa0947400:CDS |
| GAAGGATGATGAAACTGCGA+TGG | 0.556779 | 6_3:+30052454 | Msa0947400:CDS |
| TAAGAAATTAGATCCAAAGA+AGG | 0.561244 | 6_3:+30052436 | Msa0947400:CDS |
| TCATAAAACAACAAGCATCA+AGG | 0.565833 | 6_3:-30055270 | None:intergenic |
| AAGTCCTGGATTGACTCCAA+TGG | 0.567758 | 6_3:+30053302 | Msa0947400:CDS |
| ACATTTCAATACTTAAAGGC+AGG | 0.578863 | 6_3:+30055317 | Msa0947400:three_prime_UTR |
| TAGAGTATACAATTCGAGCT+TGG | 0.586855 | 6_3:+30051156 | Msa0947400:CDS |
| GAATTAAGGAACTGGATCAA+GGG | 0.591418 | 6_3:+30054882 | Msa0947400:intron |
| GCAGGGAAAAGCTACAAGAC+AGG | 0.591647 | 6_3:+30054771 | Msa0947400:CDS |
| GTCTTGAAAATATGCCATTG+AGG | 0.597910 | 6_3:+30052510 | Msa0947400:CDS |
| ATCAAGATGATGTATATGAA+CGG | 0.600804 | 6_3:+30052483 | Msa0947400:CDS |
| ACAATGATCCTATCAAATGT+CGG | 0.619773 | 6_3:-30052670 | None:intergenic |
| CATATCTATTAAGAACACTC+AGG | 0.628921 | 6_3:+30052240 | Msa0947400:CDS |
| CAAACAACTAGACAGTGGAA+AGG | 0.633119 | 6_3:+30054315 | Msa0947400:CDS |
| CCTAATTACAAGCTCCTCAG+TGG | 0.637107 | 6_3:-30055226 | None:intergenic |
| AATTACAAGCTCCTCAGTGG+TGG | 0.644878 | 6_3:-30055223 | None:intergenic |
| GGACATAAGTTGGAACAACA+AGG | 0.645564 | 6_3:+30051332 | Msa0947400:CDS |
| GGAACTGGATCAAGGGTGTG+AGG | 0.652590 | 6_3:+30054889 | Msa0947400:intron |
| ACTAACCAATCCAACAATAG+CGG | 0.662232 | 6_3:-30053346 | None:intergenic |
| CATTGGAATTGATCAAACGA+CGG | 0.663837 | 6_3:+30052169 | Msa0947400:CDS |
| TATGACAAACAACTAGACAG+TGG | 0.680152 | 6_3:+30054310 | Msa0947400:CDS |
| CTTGTAATTAGGGCAAACCA+AGG | 0.680941 | 6_3:+30055237 | Msa0947400:CDS |
| TAGTATATCATATTTCGGCG+TGG | 0.680985 | 6_3:+30052146 | Msa0947400:intron |
| GCATTTCAGAAACATCCCAA+TGG | 0.685860 | 6_3:+30052959 | Msa0947400:CDS |
| GATAATTGGTGCCACCACTG+AGG | 0.746391 | 6_3:+30055212 | Msa0947400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTATATATATTTGAAAA+TGG | - | chr6_3:30051231-30051250 | None:intergenic | 10.0% |
| !!! | AATTATATGTGTATTTTTTT+TGG | + | chr6_3:30051476-30051495 | Msa0947400:intron | 10.0% |
| !! | ATTCAATATATATAATCATA+AGG | + | chr6_3:30051840-30051859 | Msa0947400:intron | 10.0% |
| !!! | ATACTTTATTTAAATCTATT+AGG | + | chr6_3:30052008-30052027 | Msa0947400:intron | 10.0% |
| !!! | TATTTTAGTATATCATATTT+CGG | + | chr6_3:30052141-30052160 | Msa0947400:intron | 10.0% |
| !! | TTAAGAAAATTGACATATTT+CGG | + | chr6_3:30050820-30050839 | Msa0947400:intron | 15.0% |
| !! | CTGGTTTATATATTATATAT+TGG | - | chr6_3:30051036-30051055 | None:intergenic | 15.0% |
| !!! | CTAATAAAGTTTAAAACATA+TGG | + | chr6_3:30052365-30052384 | Msa0947400:intron | 15.0% |
| !! | TTTATTACCTAATTATAACA+TGG | + | chr6_3:30053043-30053062 | Msa0947400:intron | 15.0% |
| !!! | ATGTTTAACTTTTTCTTAAT+AGG | + | chr6_3:30053425-30053444 | Msa0947400:intron | 15.0% |
| !! | TAAGCTATATATTTGAATTA+AGG | + | chr6_3:30054868-30054887 | Msa0947400:intron | 15.0% |
| !!! | AAATCTAATGTCTAAGATAA+AGG | - | chr6_3:30050742-30050761 | None:intergenic | 20.0% |
| !!! | GAAATACAGTTAATTTTGTT+TGG | + | chr6_3:30050962-30050981 | Msa0947400:intron | 20.0% |
| !! | TCATATCTTCAAATTGTAAA+AGG | - | chr6_3:30051184-30051203 | None:intergenic | 20.0% |
| !! | TTTACAATTTGAAGATATGA+TGG | + | chr6_3:30051184-30051203 | Msa0947400:CDS | 20.0% |
| !! | ATCAATGGTTCATATATATT+TGG | + | chr6_3:30051649-30051668 | Msa0947400:intron | 20.0% |
| !! | AAATCTGGAAGATTATTAAA+CGG | - | chr6_3:30051975-30051994 | None:intergenic | 20.0% |
| !!! | TTGATTAATTGTTCTGTTTT+AGG | + | chr6_3:30052060-30052079 | Msa0947400:intron | 20.0% |
| !!! | TCATGTTATTTCTATGTATA+TGG | + | chr6_3:30052533-30052552 | Msa0947400:intron | 20.0% |
| !!! | TATCTTTTATAAGGTTAAGT+TGG | + | chr6_3:30052848-30052867 | Msa0947400:intron | 20.0% |
| !! | TATTATGCTAAAATATTAGC+TGG | + | chr6_3:30052873-30052892 | Msa0947400:intron | 20.0% |
| !! | ATTTCAGTTATAAAACATCT+TGG | + | chr6_3:30053008-30053027 | Msa0947400:intron | 20.0% |
| !!! | TTTAGAACCATGTTATAATT+AGG | - | chr6_3:30053053-30053072 | None:intergenic | 20.0% |
| !!! | TCACAAAATAATGGTTTTAA+AGG | - | chr6_3:30053187-30053206 | None:intergenic | 20.0% |
| !!! | TTAATGAACTTGCTATATAT+AGG | + | chr6_3:30054239-30054258 | Msa0947400:intron | 20.0% |
| !!! | GTATTTTCTCAAATTAACAT+TGG | - | chr6_3:30054505-30054524 | None:intergenic | 20.0% |
| !!! | GATTTCATTCTTTTTTCTAA+TGG | + | chr6_3:30054747-30054766 | Msa0947400:CDS | 20.0% |
| !! | ACAACTAATATTAAAATGCT+AGG | - | chr6_3:30054823-30054842 | None:intergenic | 20.0% |
| !! | ATATATTTGAATTAAGGAAC+TGG | + | chr6_3:30054874-30054893 | Msa0947400:intron | 20.0% |
| !! | TAATGAACACTTTATTAGAA+GGG | - | chr6_3:30055016-30055035 | None:intergenic | 20.0% |
| !! | ATAATGAACACTTTATTAGA+AGG | - | chr6_3:30055017-30055036 | None:intergenic | 20.0% |
| !! | ATGTACATTTCAATACTTAA+AGG | + | chr6_3:30055313-30055332 | Msa0947400:three_prime_UTR | 20.0% |
| ! | CTAAGATAAAGGAAAAAAGA+AGG | - | chr6_3:30050731-30050750 | None:intergenic | 25.0% |
| !!! | ATCTCTAAAATACCTCAAAA+AGG | - | chr6_3:30051406-30051425 | None:intergenic | 25.0% |
| ! | TTAGATTCATTAACAGTGAT+GGG | - | chr6_3:30051786-30051805 | None:intergenic | 25.0% |
| ! | ATTACCTTATCATAGAAATC+TGG | - | chr6_3:30051990-30052009 | None:intergenic | 25.0% |
| ! | TAAATCTATTAGGAATGCTA+AGG | + | chr6_3:30052018-30052037 | Msa0947400:intron | 25.0% |
| !! | TTACTTTATAATGGAGAAAG+TGG | + | chr6_3:30052193-30052212 | Msa0947400:CDS | 25.0% |
| ! | TAAGAAATTAGATCCAAAGA+AGG | + | chr6_3:30052436-30052455 | Msa0947400:CDS | 25.0% |
| ! | ATCAAGATGATGTATATGAA+CGG | + | chr6_3:30052483-30052502 | Msa0947400:CDS | 25.0% |
| !! | TGATGATGATTGGAAAAAAA+AGG | - | chr6_3:30052778-30052797 | None:intergenic | 25.0% |
| ! | TTTCTCATTCACACATTAAT+TGG | - | chr6_3:30052817-30052836 | None:intergenic | 25.0% |
| !!! | TATAACATGGTTCTAAATTG+TGG | + | chr6_3:30053056-30053075 | Msa0947400:intron | 25.0% |
| ! | TTGTTCAAAAATTTCGATTG+CGG | - | chr6_3:30053210-30053229 | None:intergenic | 25.0% |
| !! | TCACTTATTGTCATTTATGA+GGG | - | chr6_3:30053248-30053267 | None:intergenic | 25.0% |
| !! | ATCACTTATTGTCATTTATG+AGG | - | chr6_3:30053249-30053268 | None:intergenic | 25.0% |
| ! | ATCATGATGAAAATTTAGTC+CGG | + | chr6_3:30053598-30053617 | Msa0947400:intron | 25.0% |
| ! | AAGTGCTTAATATTTATCTC+CGG | - | chr6_3:30053620-30053639 | None:intergenic | 25.0% |
| ! | AAAAAATCTGCATTGAAATC+TGG | + | chr6_3:30053770-30053789 | Msa0947400:intron | 25.0% |
| !!! | TGATTATTGCTAGCTTTTAA+GGG | - | chr6_3:30053858-30053877 | None:intergenic | 25.0% |
| !!! | TTGATTATTGCTAGCTTTTA+AGG | - | chr6_3:30053859-30053878 | None:intergenic | 25.0% |
| ! | TTAAAAGCTAGCAATAATCA+AGG | + | chr6_3:30053858-30053877 | Msa0947400:intron | 25.0% |
| ! | TAAAAGCTAGCAATAATCAA+GGG | + | chr6_3:30053859-30053878 | Msa0947400:intron | 25.0% |
| !! | GAAAGGTAATTTTGAATAGA+GGG | - | chr6_3:30054085-30054104 | None:intergenic | 25.0% |
| !! | TGAAAGGTAATTTTGAATAG+AGG | - | chr6_3:30054086-30054105 | None:intergenic | 25.0% |
| ! | ATTCAAAATTACCTTTCAAG+AGG | + | chr6_3:30054088-30054107 | Msa0947400:intron | 25.0% |
| ! | ATATAGGTTCCAACAAAAAT+TGG | + | chr6_3:30054255-30054274 | Msa0947400:intron | 25.0% |
| ! | ACATTACTAGCTAGTAATAA+TGG | - | chr6_3:30054413-30054432 | None:intergenic | 25.0% |
| !! | GCACATTAAGAATTTTAAAC+TGG | - | chr6_3:30054711-30054730 | None:intergenic | 25.0% |
| !! | GTTTAAAATTCTTAATGTGC+AGG | + | chr6_3:30054711-30054730 | Msa0947400:intron | 25.0% |
| ! | AAAAGAGCAAATGAGATAAT+TGG | + | chr6_3:30055198-30055217 | Msa0947400:CDS | 25.0% |
| ! | TCTATCTATTGAACTTTGTT+AGG | - | chr6_3:30055369-30055388 | None:intergenic | 25.0% |
| !!! | TGATCTGTTTTTCTTATACT+TGG | - | chr6_3:30055426-30055445 | None:intergenic | 25.0% |
| AGAATCCTTCAGAAAAAGTT+TGG | + | chr6_3:30050592-30050611 | Msa0947400:CDS | 30.0% | |
| !! | TTCTTCCAAACTTTTTCTGA+AGG | - | chr6_3:30050600-30050619 | None:intergenic | 30.0% |
| AAGAGCTTAGGTTTCAAAAT+TGG | - | chr6_3:30050671-30050690 | None:intergenic | 30.0% | |
| ! | ATATCTTCGATAAGAAGTGT+TGG | + | chr6_3:30050871-30050890 | Msa0947400:intron | 30.0% |
| TTGCTAATTCTACTTGTTTC+TGG | - | chr6_3:30051055-30051074 | None:intergenic | 30.0% | |
| ! | TTTCTTGACTTACCTTTTTG+AGG | + | chr6_3:30051391-30051410 | Msa0947400:intron | 30.0% |
| ! | CCTTTAAAGACGAATTATTC+AGG | - | chr6_3:30051612-30051631 | None:intergenic | 30.0% |
| CCTGAATAATTCGTCTTTAA+AGG | + | chr6_3:30051609-30051628 | Msa0947400:intron | 30.0% | |
| GATTATTTGATTCTTTGCTC+AGG | + | chr6_3:30051680-30051699 | Msa0947400:intron | 30.0% | |
| CTTAGATTCATTAACAGTGA+TGG | - | chr6_3:30051787-30051806 | None:intergenic | 30.0% | |
| CATCACTGTTAATGAATCTA+AGG | + | chr6_3:30051785-30051804 | Msa0947400:CDS | 30.0% | |
| TCTTCCAGATTTCTATGATA+AGG | + | chr6_3:30051983-30052002 | Msa0947400:CDS | 30.0% | |
| !!! | GGAATGCTAAGGATTTTTTT+TGG | + | chr6_3:30052029-30052048 | Msa0947400:intron | 30.0% |
| ACAGAACAATTAATCAACAC+TGG | - | chr6_3:30052057-30052076 | None:intergenic | 30.0% | |
| TTACTAGTTGTCAGAAAACA+TGG | - | chr6_3:30052109-30052128 | None:intergenic | 30.0% | |
| !! | AACGACGGATTACTTTATAA+TGG | + | chr6_3:30052184-30052203 | Msa0947400:CDS | 30.0% |
| CATATCTATTAAGAACACTC+AGG | + | chr6_3:30052240-30052259 | Msa0947400:CDS | 30.0% | |
| ! | ACTATGTCTCTTTGATCTTT+TGG | - | chr6_3:30052417-30052436 | None:intergenic | 30.0% |
| TAGAAATAACATGACCTCAA+TGG | - | chr6_3:30052527-30052546 | None:intergenic | 30.0% | |
| TTGTCACTAATGAGATCATT+TGG | + | chr6_3:30052598-30052617 | Msa0947400:intron | 30.0% | |
| ACAATGATCCTATCAAATGT+CGG | - | chr6_3:30052673-30052692 | None:intergenic | 30.0% | |
| !! | ATAGGATCATTGTTGTTTAC+AGG | + | chr6_3:30052680-30052699 | Msa0947400:CDS | 30.0% |
| CATTCACACATTAATTGGTA+TGG | - | chr6_3:30052812-30052831 | None:intergenic | 30.0% | |
| CTGGACATTATTGTTTGTTT+AGG | + | chr6_3:30052892-30052911 | Msa0947400:intron | 30.0% | |
| TTCACAAAAATTCCTCTTTC+GGG | - | chr6_3:30052939-30052958 | None:intergenic | 30.0% | |
| CTTCACAAAAATTCCTCTTT+CGG | - | chr6_3:30052940-30052959 | None:intergenic | 30.0% | |
| CACAAGAACTATTTCCATAT+CGG | - | chr6_3:30052985-30053004 | None:intergenic | 30.0% | |
| TAACTACCAAGTTTGACATT+TGG | - | chr6_3:30053735-30053754 | None:intergenic | 30.0% | |
| !! | CTTTTAAGGGATATGGAATT+TGG | - | chr6_3:30053845-30053864 | None:intergenic | 30.0% |
| TTATCAATTAGTGTTAGAGC+TGG | - | chr6_3:30054042-30054061 | None:intergenic | 30.0% | |
| TTGATAAGTATCCAAGCATT+TGG | + | chr6_3:30054055-30054074 | Msa0947400:intron | 30.0% | |
| TGATAAGTATCCAAGCATTT+GGG | + | chr6_3:30054056-30054075 | Msa0947400:intron | 30.0% | |
| ! | TGCTCAATAGAGTATTTAAG+TGG | - | chr6_3:30054125-30054144 | None:intergenic | 30.0% |
| !! | GTGATTACTAGTTGTTTTGT+TGG | - | chr6_3:30054215-30054234 | None:intergenic | 30.0% |
| GAATGACATCATCACATAAA+TGG | - | chr6_3:30054351-30054370 | None:intergenic | 30.0% | |
| GTAATTCGTGATTAGATTGT+TGG | + | chr6_3:30054642-30054661 | Msa0947400:intron | 30.0% | |
| !!! | ATTCTTTTTTCTAATGGAGC+AGG | + | chr6_3:30054753-30054772 | Msa0947400:CDS | 30.0% |
| !!! | TTCTTTTTTCTAATGGAGCA+GGG | + | chr6_3:30054754-30054773 | Msa0947400:CDS | 30.0% |
| TGTTCACAAACTTGAGAAAT+TGG | + | chr6_3:30054964-30054983 | Msa0947400:CDS | 30.0% | |
| GTTCACAAACTTGAGAAATT+GGG | + | chr6_3:30054965-30054984 | Msa0947400:CDS | 30.0% | |
| ! | TAATGACTTGAAGCTTTTGT+TGG | + | chr6_3:30055135-30055154 | Msa0947400:intron | 30.0% |
| TCATAAAACAACAAGCATCA+AGG | - | chr6_3:30055273-30055292 | None:intergenic | 30.0% | |
| ACATTTCAATACTTAAAGGC+AGG | + | chr6_3:30055317-30055336 | Msa0947400:three_prime_UTR | 30.0% | |
| GCAGGAACAAAAAATTTCAA+GGG | + | chr6_3:30055335-30055354 | Msa0947400:three_prime_UTR | 30.0% | |
| ! | TTTGAAACCTAAGCTCTTCA+TGG | + | chr6_3:30050673-30050692 | Msa0947400:intron | 35.0% |
| TAGAGTATACAATTCGAGCT+TGG | + | chr6_3:30051156-30051175 | Msa0947400:CDS | 35.0% | |
| !! | CACTTTTTGATCCTGTATCT+GGG | + | chr6_3:30051309-30051328 | Msa0947400:CDS | 35.0% |
| ! | ACTTTTTGATCCTGTATCTG+GGG | + | chr6_3:30051310-30051329 | Msa0947400:CDS | 35.0% |
| TAAAGGTCCATAAAGCAAGT+TGG | + | chr6_3:30051626-30051645 | Msa0947400:intron | 35.0% | |
| ! | CATTGATCCAACTTGCTTTA+TGG | - | chr6_3:30051636-30051655 | None:intergenic | 35.0% |
| ! | CATAAAGCAAGTTGGATCAA+TGG | + | chr6_3:30051634-30051653 | Msa0947400:intron | 35.0% |
| GAGATTAATGTTGCACTTTC+TGG | + | chr6_3:30051741-30051760 | Msa0947400:CDS | 35.0% | |
| TGTCAGAAAACATGGTACAA+AGG | - | chr6_3:30052101-30052120 | None:intergenic | 35.0% | |
| TAGTATATCATATTTCGGCG+TGG | + | chr6_3:30052146-30052165 | Msa0947400:intron | 35.0% | |
| CATTGGAATTGATCAAACGA+CGG | + | chr6_3:30052169-30052188 | Msa0947400:CDS | 35.0% | |
| TTAAAACATATGGTGCTTCC+AGG | + | chr6_3:30052375-30052394 | Msa0947400:intron | 35.0% | |
| GTCTTGAAAATATGCCATTG+AGG | + | chr6_3:30052510-30052529 | Msa0947400:CDS | 35.0% | |
| !! | TTTGGTGCAATTTTCAGTTC+TGG | + | chr6_3:30052616-30052635 | Msa0947400:intron | 35.0% |
| !! | AAATGTCGGTTCTTGGATTA+GGG | - | chr6_3:30052659-30052678 | None:intergenic | 35.0% |
| CAGCAAAATACAGACAAATC+AGG | + | chr6_3:30053120-30053139 | Msa0947400:intron | 35.0% | |
| ! | AATCCAGGACTTTTCTTTTC+TGG | - | chr6_3:30053294-30053313 | None:intergenic | 35.0% |
| ACTAACCAATCCAACAATAG+CGG | - | chr6_3:30053349-30053368 | None:intergenic | 35.0% | |
| !! | ACAACTGATTTGAGGGTTAT+CGG | + | chr6_3:30053477-30053496 | Msa0947400:CDS | 35.0% |
| AGAGTTCGTTAGATTGAGAT+TGG | + | chr6_3:30053704-30053723 | Msa0947400:intron | 35.0% | |
| GATAGTCCAAATGTCAAACT+TGG | + | chr6_3:30053726-30053745 | Msa0947400:intron | 35.0% | |
| !!! | TTGCTAGCTTTTAAGGGATA+TGG | - | chr6_3:30053852-30053871 | None:intergenic | 35.0% |
| AATAATCAAGGGAAAGAACC+AGG | + | chr6_3:30053870-30053889 | Msa0947400:intron | 35.0% | |
| GATGAATAGTATGGAATGCT+TGG | - | chr6_3:30053912-30053931 | None:intergenic | 35.0% | |
| ! | GGAGTTGTTGATGAATAGTA+TGG | - | chr6_3:30053921-30053940 | None:intergenic | 35.0% |
| GATAAGTATCCAAGCATTTG+GGG | + | chr6_3:30054057-30054076 | Msa0947400:intron | 35.0% | |
| ! | CTTAGTTCTTTCCTCTTGAA+AGG | - | chr6_3:30054102-30054121 | None:intergenic | 35.0% |
| ! | GATATGCTGCCAATTTTTGT+TGG | - | chr6_3:30054267-30054286 | None:intergenic | 35.0% |
| TATGACAAACAACTAGACAG+TGG | + | chr6_3:30054310-30054329 | Msa0947400:CDS | 35.0% | |
| AAACAACTAGACAGTGGAAA+GGG | + | chr6_3:30054316-30054335 | Msa0947400:CDS | 35.0% | |
| ACTGAAACAAACACGAACAT+CGG | + | chr6_3:30054448-30054467 | Msa0947400:intron | 35.0% | |
| AAGTTAGTGTCGTGTCAATT+GGG | + | chr6_3:30054546-30054565 | Msa0947400:intron | 35.0% | |
| TGAATTAAGGAACTGGATCA+AGG | + | chr6_3:30054881-30054900 | Msa0947400:intron | 35.0% | |
| GAATTAAGGAACTGGATCAA+GGG | + | chr6_3:30054882-30054901 | Msa0947400:intron | 35.0% | |
| GAAATTGGGAATTGTCACTA+AGG | + | chr6_3:30054979-30054998 | Msa0947400:CDS | 35.0% | |
| ! | TGAAGCTTTTGTTGGAATTC+AGG | + | chr6_3:30055143-30055162 | Msa0947400:intron | 35.0% |
| ACACATTGATATCGTCCTAT+TGG | - | chr6_3:30055171-30055190 | None:intergenic | 35.0% | |
| ATAGGACGATATCAATGTGT+TGG | + | chr6_3:30055171-30055190 | Msa0947400:CDS | 35.0% | |
| ATCAAGGAGTAATGTTTCCT+TGG | - | chr6_3:30055257-30055276 | None:intergenic | 35.0% | |
| GGCAGGAACAAAAAATTTCA+AGG | + | chr6_3:30055334-30055353 | Msa0947400:three_prime_UTR | 35.0% | |
| ! | ACGTTTCACAGTTTTCGTAG+AGG | - | chr6_3:30050784-30050803 | None:intergenic | 40.0% |
| !! | AAGAAGTGTTGGTGTTAGAG+TGG | + | chr6_3:30050882-30050901 | Msa0947400:intron | 40.0% |
| !! | GCACTTTTTGATCCTGTATC+TGG | + | chr6_3:30051308-30051327 | Msa0947400:CDS | 40.0% |
| ! | CTTTTTGATCCTGTATCTGG+GGG | + | chr6_3:30051311-30051330 | Msa0947400:CDS | 40.0% |
| ! | GGACATAAGTTGGAACAACA+AGG | + | chr6_3:30051332-30051351 | Msa0947400:CDS | 40.0% |
| !!! | TTTTTTTGGTGTTGACCCTC+TGG | + | chr6_3:30051490-30051509 | Msa0947400:intron | 40.0% |
| GCAGTTTCATCATCCTTCTT+TGG | - | chr6_3:30052452-30052471 | None:intergenic | 40.0% | |
| !! | CAAATGTCGGTTCTTGGATT+AGG | - | chr6_3:30052660-30052679 | None:intergenic | 40.0% |
| TCCAAGAACCGACATTTGAT+AGG | + | chr6_3:30052662-30052681 | Msa0947400:CDS | 40.0% | |
| !! | TCCTATCAAATGTCGGTTCT+TGG | - | chr6_3:30052666-30052685 | None:intergenic | 40.0% |
| ! | TTGCTCAGTGTGATGATGAT+TGG | - | chr6_3:30052788-30052807 | None:intergenic | 40.0% |
| !!! | TCCTCTTTCGGGTTTTGAAT+CGG | - | chr6_3:30052928-30052947 | None:intergenic | 40.0% |
| GCATTTCAGAAACATCCCAA+TGG | + | chr6_3:30052959-30052978 | Msa0947400:CDS | 40.0% | |
| CTATTTCCATATCGGCCATT+GGG | - | chr6_3:30052977-30052996 | None:intergenic | 40.0% | |
| ACTATTTCCATATCGGCCAT+TGG | - | chr6_3:30052978-30052997 | None:intergenic | 40.0% | |
| CAGCGTAATTGAGATTGTGA+CGG | - | chr6_3:30053085-30053104 | None:intergenic | 40.0% | |
| ACAGACAAATCAGGTAGATG+TGG | + | chr6_3:30053129-30053148 | Msa0947400:intron | 40.0% | |
| CGATTGCGGTCACAAAATAA+TGG | - | chr6_3:30053196-30053215 | None:intergenic | 40.0% | |
| ! | TGGATTGACTCCAATGGATT+GGG | + | chr6_3:30053308-30053327 | Msa0947400:CDS | 40.0% |
| AGAAACTTCACCCAATCCAT+TGG | - | chr6_3:30053321-30053340 | None:intergenic | 40.0% | |
| !! | ATGGATTGGGTGAAGTTTCT+CGG | + | chr6_3:30053321-30053340 | Msa0947400:CDS | 40.0% |
| ATCAGTTGTAGCTGCTTGAA+GGG | - | chr6_3:30053466-30053485 | None:intergenic | 40.0% | |
| AATCAGTTGTAGCTGCTTGA+AGG | - | chr6_3:30053467-30053486 | None:intergenic | 40.0% | |
| !! | AAGCAGCTACAACTGATTTG+AGG | + | chr6_3:30053469-30053488 | Msa0947400:CDS | 40.0% |
| !! | AGCAGCTACAACTGATTTGA+GGG | + | chr6_3:30053470-30053489 | Msa0947400:CDS | 40.0% |
| GCTGTTCTTTCTACAGTAGT+CGG | + | chr6_3:30053501-30053520 | Msa0947400:CDS | 40.0% | |
| ACGTACCAATTACGTGAATG+CGG | - | chr6_3:30053683-30053702 | None:intergenic | 40.0% | |
| TGATTTCGATCCAACAGCAA+CGG | + | chr6_3:30053795-30053814 | Msa0947400:intron | 40.0% | |
| TTGGATTGCATCAATGCAGT+TGG | - | chr6_3:30053826-30053845 | None:intergenic | 40.0% | |
| !! | TGCTTGGTGACGTATTTAAG+TGG | - | chr6_3:30053896-30053915 | None:intergenic | 40.0% |
| TTAGTGTTAGAGCTGGTTGT+TGG | - | chr6_3:30054035-30054054 | None:intergenic | 40.0% | |
| ! | CAACAGAAACATGTCGATTG+AGG | - | chr6_3:30054181-30054200 | None:intergenic | 40.0% |
| CAAACAACTAGACAGTGGAA+AGG | + | chr6_3:30054315-30054334 | Msa0947400:CDS | 40.0% | |
| CAAGTTAGTGTCGTGTCAAT+TGG | + | chr6_3:30054545-30054564 | Msa0947400:intron | 40.0% | |
| ! | ACGCCTTCAATCAAAAGTGT+CGG | + | chr6_3:30054582-30054601 | Msa0947400:intron | 40.0% |
| GGCATTGTTGTCTACATGTT+TGG | - | chr6_3:30054690-30054709 | None:intergenic | 40.0% | |
| GTTGGAATTCAGGATCCAAT+AGG | + | chr6_3:30055153-30055172 | Msa0947400:intron | 40.0% | |
| CACTGAGGAGCTTGTAATTA+GGG | + | chr6_3:30055227-30055246 | Msa0947400:CDS | 40.0% | |
| CTTGTAATTAGGGCAAACCA+AGG | + | chr6_3:30055237-30055256 | Msa0947400:CDS | 40.0% | |
| ACCTAAGCTCTTCATGGCAT+TGG | + | chr6_3:30050679-30050698 | Msa0947400:intron | 45.0% | |
| !! | CACAGTTTTCGTAGAGGTGT+CGG | - | chr6_3:30050778-30050797 | None:intergenic | 45.0% |
| AACTTATGTCCCCCAGATAC+AGG | - | chr6_3:30051323-30051342 | None:intergenic | 45.0% | |
| TGTATCTGGGGGACATAAGT+TGG | + | chr6_3:30051322-30051341 | Msa0947400:CDS | 45.0% | |
| ! | TTACATGACCCTTTTCCCCT+TGG | - | chr6_3:30051518-30051537 | None:intergenic | 45.0% |
| GGGAAAAGGGTCATGTAATC+CGG | + | chr6_3:30051520-30051539 | Msa0947400:intron | 45.0% | |
| ATCATATTTCGGCGTGGCAT+TGG | + | chr6_3:30052152-30052171 | Msa0947400:CDS | 45.0% | |
| ACATGCTCATTGCACGTTTC+TGG | + | chr6_3:30052216-30052235 | Msa0947400:CDS | 45.0% | |
| AACATATGGTGCTTCCAGGT+TGG | + | chr6_3:30052379-30052398 | Msa0947400:intron | 45.0% | |
| GGAAATCAGATTCTCCAACC+TGG | - | chr6_3:30052396-30052415 | None:intergenic | 45.0% | |
| GAAGGATGATGAAACTGCGA+TGG | + | chr6_3:30052454-30052473 | Msa0947400:CDS | 45.0% | |
| !!! | TTCGGGTTTTGAATCGGAAC+TGG | - | chr6_3:30052922-30052941 | None:intergenic | 45.0% |
| TCCGATTCAAAACCCGAAAG+AGG | + | chr6_3:30052924-30052943 | Msa0947400:CDS | 45.0% | |
| AAACATCCCAATGGCCGATA+TGG | + | chr6_3:30052968-30052987 | Msa0947400:CDS | 45.0% | |
| CAGCCAGAAAAGAAAAGTCC+TGG | + | chr6_3:30053288-30053307 | Msa0947400:intron | 45.0% | |
| ! | AAGTCCTGGATTGACTCCAA+TGG | + | chr6_3:30053302-30053321 | Msa0947400:CDS | 45.0% |
| CAATCCATTGGAGTCAATCC+AGG | - | chr6_3:30053309-30053328 | None:intergenic | 45.0% | |
| ! | CTGGATTGACTCCAATGGAT+TGG | + | chr6_3:30053307-30053326 | Msa0947400:CDS | 45.0% |
| TTTCTCGGATCCGCTATTGT+TGG | + | chr6_3:30053336-30053355 | Msa0947400:CDS | 45.0% | |
| ATTCCCCGCATTCACGTAAT+TGG | + | chr6_3:30053675-30053694 | Msa0947400:intron | 45.0% | |
| GTACCAATTACGTGAATGCG+GGG | - | chr6_3:30053681-30053700 | None:intergenic | 45.0% | |
| CGTACCAATTACGTGAATGC+GGG | - | chr6_3:30053682-30053701 | None:intergenic | 45.0% | |
| TAGTGTCGTGTCAATTGGGT+TGG | + | chr6_3:30054550-30054569 | Msa0947400:intron | 45.0% | |
| !! | GCACCGACACTTTTGATTGA+AGG | - | chr6_3:30054588-30054607 | None:intergenic | 45.0% |
| AATTACAAGCTCCTCAGTGG+TGG | - | chr6_3:30055226-30055245 | None:intergenic | 45.0% | |
| CCTAATTACAAGCTCCTCAG+TGG | - | chr6_3:30055229-30055248 | None:intergenic | 45.0% | |
| CCACTGAGGAGCTTGTAATT+AGG | + | chr6_3:30055226-30055245 | Msa0947400:CDS | 45.0% | |
| !!! | TAATTAATTTATCTTTTATA+AGG | + | chr6_3:30052839-30052858 | Msa0947400:intron | 5.0% |
| GCCAATGCCATGAAGAGCTT+AGG | - | chr6_3:30050683-30050702 | None:intergenic | 50.0% | |
| ! | TGTTGACCCTCTGGTTCCAA+GGG | + | chr6_3:30051499-30051518 | Msa0947400:intron | 50.0% |
| ! | CTTTTCCCCTTGGAACCAGA+GGG | - | chr6_3:30051508-30051527 | None:intergenic | 50.0% |
| ! | CTCTGGTTCCAAGGGGAAAA+GGG | + | chr6_3:30051507-30051526 | Msa0947400:intron | 50.0% |
| GGGTCATGTAATCCGGAGTT+CGG | + | chr6_3:30051527-30051546 | Msa0947400:intron | 50.0% | |
| ACTTACCACTTGCCGAACTC+CGG | - | chr6_3:30051542-30051561 | None:intergenic | 50.0% | |
| CGGATCCGCTATTGTTGGAT+TGG | + | chr6_3:30053341-30053360 | Msa0947400:CDS | 50.0% | |
| GTTGGTACATCCGTTGCTGT+TGG | - | chr6_3:30053808-30053827 | None:intergenic | 50.0% | |
| GGTGACGTATTTAAGTGGCC+TGG | - | chr6_3:30053891-30053910 | None:intergenic | 50.0% | |
| TCAGGGACGTTGCTATGGTA+GGG | - | chr6_3:30053942-30053961 | None:intergenic | 50.0% | |
| GATTCTCAGGGACGTTGCTA+TGG | - | chr6_3:30053947-30053966 | None:intergenic | 50.0% | |
| !! | CGTCGAGACATCGATTCTCA+GGG | - | chr6_3:30053959-30053978 | None:intergenic | 50.0% |
| !! | TCGTCGAGACATCGATTCTC+AGG | - | chr6_3:30053960-30053979 | None:intergenic | 50.0% |
| TCGGACGGGATTGACTACAA+AGG | - | chr6_3:30054008-30054027 | None:intergenic | 50.0% | |
| GTGTTAGAGCTGGTTGTTGG+TGG | - | chr6_3:30054032-30054051 | None:intergenic | 50.0% | |
| TAGAGGGTTCCCCAAATGCT+TGG | - | chr6_3:30054069-30054088 | None:intergenic | 50.0% | |
| GCAGGGAAAAGCTACAAGAC+AGG | + | chr6_3:30054771-30054790 | Msa0947400:CDS | 50.0% | |
| !! | GATAATTGGTGCCACCACTG+AGG | + | chr6_3:30055212-30055231 | Msa0947400:CDS | 50.0% |
| ! | GTGTTGACCCTCTGGTTCCA+AGG | + | chr6_3:30051498-30051517 | Msa0947400:intron | 55.0% |
| ! | GTTGACCCTCTGGTTCCAAG+GGG | + | chr6_3:30051500-30051519 | Msa0947400:intron | 55.0% |
| ! | CCTTTTCCCCTTGGAACCAG+AGG | - | chr6_3:30051509-30051528 | None:intergenic | 55.0% |
| ! | CCTCTGGTTCCAAGGGGAAA+AGG | + | chr6_3:30051506-30051525 | Msa0947400:intron | 55.0% |
| GTAATCCGGAGTTCGGCAAG+TGG | + | chr6_3:30051534-30051553 | Msa0947400:intron | 55.0% | |
| CTCAGGGACGTTGCTATGGT+AGG | - | chr6_3:30053943-30053962 | None:intergenic | 55.0% | |
| !! | AGAGCTGGTTGTTGGTGGCT+CGG | - | chr6_3:30054027-30054046 | None:intergenic | 55.0% |
| ! | GGAACTGGATCAAGGGTGTG+AGG | + | chr6_3:30054889-30054908 | Msa0947400:intron | 55.0% |
| GTCTCGACGATTGCGCTCAG+CGG | + | chr6_3:30053970-30053989 | Msa0947400:intron | 60.0% | |
| !! | TGGTTGTTGGTGGCTCGGAC+GGG | - | chr6_3:30054022-30054041 | None:intergenic | 60.0% |
| !! | CTGGTTGTTGGTGGCTCGGA+CGG | - | chr6_3:30054023-30054042 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 30050572 | 30055450 | 30050572 | ID=Msa0947400;Name=Msa0947400 |
| chr6_3 | mRNA | 30050572 | 30055450 | 30050572 | ID=Msa0947400-mRNA-1;Parent=Msa0947400;Name=Msa0947400-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.71|0.73|1|0.92|0.93|15|175|457 |
| chr6_3 | exon | 30050572 | 30050653 | 30050572 | ID=Msa0947400-mRNA-1:exon:7959;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30051111 | 30051205 | 30051111 | ID=Msa0947400-mRNA-1:exon:7960;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30051299 | 30051376 | 30051299 | ID=Msa0947400-mRNA-1:exon:7961;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30051702 | 30051806 | 30051702 | ID=Msa0947400-mRNA-1:exon:7962;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30051933 | 30052004 | 30051933 | ID=Msa0947400-mRNA-1:exon:7963;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30052149 | 30052261 | 30052149 | ID=Msa0947400-mRNA-1:exon:7964;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30052397 | 30052531 | 30052397 | ID=Msa0947400-mRNA-1:exon:7965;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30052633 | 30052701 | 30052633 | ID=Msa0947400-mRNA-1:exon:7966;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30052914 | 30053001 | 30052914 | ID=Msa0947400-mRNA-1:exon:7967;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30053291 | 30053362 | 30053291 | ID=Msa0947400-mRNA-1:exon:7968;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30053447 | 30053547 | 30053447 | ID=Msa0947400-mRNA-1:exon:7969;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30054261 | 30054337 | 30054261 | ID=Msa0947400-mRNA-1:exon:7970;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30054733 | 30054797 | 30054733 | ID=Msa0947400-mRNA-1:exon:7971;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30054890 | 30055000 | 30054890 | ID=Msa0947400-mRNA-1:exon:7972;Parent=Msa0947400-mRNA-1 |
| chr6_3 | exon | 30055165 | 30055450 | 30055165 | ID=Msa0947400-mRNA-1:exon:7973;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30050572 | 30050653 | 30050572 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30051111 | 30051205 | 30051111 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30051299 | 30051376 | 30051299 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30051702 | 30051806 | 30051702 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30051933 | 30052004 | 30051933 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30052149 | 30052261 | 30052149 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30052397 | 30052531 | 30052397 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30052633 | 30052701 | 30052633 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30052914 | 30053001 | 30052914 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30053291 | 30053362 | 30053291 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30053447 | 30053547 | 30053447 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30054261 | 30054337 | 30054261 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30054733 | 30054797 | 30054733 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30054890 | 30055000 | 30054890 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | CDS | 30055165 | 30055275 | 30055165 | ID=Msa0947400-mRNA-1:cds;Parent=Msa0947400-mRNA-1 |
| chr6_3 | three_prime_UTR | 30055276 | 30055450 | 30055276 | ID=Msa0947400-mRNA-1:three_prime_utr;Parent=Msa0947400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
