AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0883880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883880 MtrunA17_Chr6g0464451 92.963 270 17 1 1 270 42 309 6.06e-177 489
Msa0883880 MtrunA17_Chr6g0464411 72.694 271 70 1 1 271 1 267 3.51e-147 412
Msa0883880 MtrunA17_Chr6g0464441 77.931 145 32 0 127 271 1 145 2.20e-80 239
Msa0883880 MtrunA17_Chr6g0464421 60.169 118 43 1 1 118 1 114 2.25e-45 150
Msa0883880 MtrunA17_Chr7g0241571 43.396 106 58 2 167 271 160 264 2.52e-19 85.1
Msa0883880 MtrunA17_Chr4g0031681 42.697 89 49 2 185 272 174 261 1.19e-14 73.2
Msa0883880 MtrunA17_Chr5g0440411 28.655 171 113 4 109 271 141 310 2.09e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883880 AT5G16010.1 58.113 265 107 2 8 271 6 267 5.97e-114 329
Msa0883880 AT2G38050.1 33.019 106 70 1 167 271 156 261 3.95e-14 70.9
Msa0883880 AT3G55360.1 31.579 171 108 5 109 271 141 310 3.88e-13 68.6

Find 55 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTACGTTCCAGAATT+TGG 0.111816 6_1:+36134944 None:intergenic
CTTCGGTAGATAATAGAATT+TGG 0.217358 6_1:+36132445 None:intergenic
ATAATAGCCTTAACATTCTT+AGG 0.263013 6_1:+36132604 None:intergenic
ATATGAACTATTCCAAATTC+TGG 0.282119 6_1:-36134956 Msa0883880:CDS
CATTATCTCTTTGAGATCAT+AGG 0.312995 6_1:-36132754 Msa0883880:CDS
TACAAGAAACAATGTGATTC+CGG 0.321584 6_1:+36132888 None:intergenic
TAGTTATTGTTTGTTGTGTT+TGG 0.325951 6_1:-36132472 Msa0883880:three_prime_UTR
TTTAGATCTTTGGTTCTTCA+AGG 0.346488 6_1:-36134792 Msa0883880:CDS
CCACAAATATAGTGGTTCTA+TGG 0.348368 6_1:-36133025 Msa0883880:CDS
AGAAAATAACTTAGAGTTAT+GGG 0.350393 6_1:+36132985 None:intergenic
TATCTTCTATCCAAATTAAG+AGG 0.370538 6_1:-36132838 Msa0883880:CDS
AAATCAAACAAGCCACCTTT+AGG 0.388800 6_1:+36132790 None:intergenic
GAGAAAATAACTTAGAGTTA+TGG 0.393676 6_1:+36132984 None:intergenic
CTATTTGTCCACAAATATAG+TGG 0.398112 6_1:-36133033 Msa0883880:CDS
GGAATCACATTGTTTCTTGT+AGG 0.401990 6_1:-36132886 Msa0883880:CDS
TGCTCTAAATATTGCAAACT+AGG 0.411675 6_1:-36132573 Msa0883880:exon
AATAGATCGATTGGTGGTTC+TGG 0.413052 6_1:+36132916 None:intergenic
ACAAGAAACAATGTGATTCC+GGG 0.450458 6_1:+36132889 None:intergenic
ATTATCTCTTTGAGATCATA+GGG 0.450657 6_1:-36132753 Msa0883880:CDS
TATTCGTTCTCTTTCGCCAT+AGG 0.453501 6_1:-36132697 Msa0883880:CDS
GCAGGTATCAATGAAGTTAG+AGG 0.453941 6_1:-36134984 Msa0883880:CDS
CTATCCAAATTAAGAGGAAA+AGG 0.458549 6_1:-36132832 Msa0883880:CDS
CCATAGAACCACTATATTTG+TGG 0.471338 6_1:+36133025 None:intergenic
GGTTCTTCAAGGTGCTGTTA+CGG 0.475927 6_1:-36134781 Msa0883880:CDS
TTGTTTCTTGTAGGCATCAC+CGG 0.480456 6_1:-36132877 Msa0883880:CDS
AAAGATCTAAAACCATCATC+AGG 0.489846 6_1:+36134804 None:intergenic
GGTGATGAATAGTGATGGTG+GGG 0.492390 6_1:+36135043 None:intergenic
GGGGTGGGAATAGGAAGTTT+AGG 0.497094 6_1:+36135063 None:intergenic
GCTAGTGGATTTATTTCAGT+TGG 0.501782 6_1:-36132495 Msa0883880:three_prime_UTR
TTGCATAACTCCTACCCAAA+AGG 0.506130 6_1:+36132662 None:intergenic
ATACAATGTCTGAGAAATGA+AGG 0.509558 6_1:+36132717 None:intergenic
AAAGAATACAAGATTCCTAA+AGG 0.529482 6_1:-36132805 Msa0883880:CDS
CCGGGATACAATAGATCGAT+TGG 0.532651 6_1:+36132907 None:intergenic
ATGATCTCAAAGAGATAATG+AGG 0.534767 6_1:+36132757 None:intergenic
GCAGCACCAGCAACAAAAGC+AGG 0.536471 6_1:+36134843 None:intergenic
ATAATGATGGTAGAAGTTGC+CGG 0.544164 6_1:+36132858 None:intergenic
ATTTGGATAGAAGATAATGA+TGG 0.547206 6_1:+36132845 None:intergenic
TGGTGATGAATAGTGATGGT+GGG 0.547912 6_1:+36135042 None:intergenic
ATGACATTGTCGAGTAAAAG+TGG 0.551017 6_1:-36134885 Msa0883880:CDS
GGAGTTATGCAACTAGAGAA+TGG 0.568134 6_1:-36132651 Msa0883880:CDS
GTGGTGATGAATAGTGATGG+TGG 0.569321 6_1:+36135041 None:intergenic
GTGATGAATAGTGATGGTGG+GGG 0.585799 6_1:+36135044 None:intergenic
TAGGAACGTGGAGAATGTCA+TGG 0.587780 6_1:+36135082 None:intergenic
CAAATATAAGAGGTAGCTAG+TGG 0.589400 6_1:-36132510 Msa0883880:three_prime_UTR
CCAATCGATCTATTGTATCC+CGG 0.590454 6_1:-36132907 Msa0883880:CDS
CAGGTATCAATGAAGTTAGA+GGG 0.600530 6_1:-36134983 Msa0883880:CDS
GAATACAAGATTCCTAAAGG+TGG 0.614245 6_1:-36132802 Msa0883880:CDS
GGATACAATAGATCGATTGG+TGG 0.622127 6_1:+36132910 None:intergenic
GTTCTGGAAGATTCGACGTG+AGG 0.646091 6_1:+36132932 None:intergenic
AAGTGAGACACATGTTATGA+CGG 0.651801 6_1:+36135013 None:intergenic
GAATAGGAAGTTTAGGAACG+TGG 0.656255 6_1:+36135070 None:intergenic
TGTGTCTCACTTGCAAACGC+AGG 0.665442 6_1:-36135002 Msa0883880:CDS
ATGGTGGTGATGAATAGTGA+TGG 0.688903 6_1:+36135038 None:intergenic
ACATGTTATGACGGACATGG+TGG 0.752619 6_1:+36135022 None:intergenic
GACACATGTTATGACGGACA+TGG 0.797222 6_1:+36135019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATTTTAATTGTTGT+GGG - chr6_1:36132944-36132963 Msa0883880:CDS 15.0%
!! ACATATATATGTTTATAAGT+GGG + chr6_1:36133612-36133631 None:intergenic 15.0%
!! TTAAAATTCTGAATAAGATA+AGG + chr6_1:36134221-36134240 None:intergenic 15.0%
!!! TTTTGTTATTCAAATATAAG+AGG - chr6_1:36135075-36135094 Msa0883880:CDS 15.0%
!!! GTTTATGATTTTAATTGTTG+TGG - chr6_1:36132943-36132962 Msa0883880:CDS 20.0%
!!! TTATGTATGCTTTAAAGTTT+AGG - chr6_1:36133417-36133436 Msa0883880:intron 20.0%
!! ATAGTTATGCATTCTATTTA+AGG + chr6_1:36133464-36133483 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG - chr6_1:36133566-36133585 Msa0883880:intron 20.0%
!! ATATATATGTTTATAAGTGG+GGG + chr6_1:36133610-36133629 None:intergenic 20.0%
!! CATATATATGTTTATAAGTG+GGG + chr6_1:36133611-36133630 None:intergenic 20.0%
!! CACATATATATGTTTATAAG+TGG + chr6_1:36133613-36133632 None:intergenic 20.0%
!! TAAATCTTTCTCATCAAATT+AGG - chr6_1:36133667-36133686 Msa0883880:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG - chr6_1:36133668-36133687 Msa0883880:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG - chr6_1:36134045-36134064 Msa0883880:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG - chr6_1:36134119-36134138 Msa0883880:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG + chr6_1:36134252-36134271 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG + chr6_1:36134613-36134632 None:intergenic 20.0%
!!! GTTTTTTTTGTTTGTTTGTG+TGG + chr6_1:36132494-36132513 None:intergenic 25.0%
! ATATGAACTATTCCAAATTC+TGG - chr6_1:36132639-36132658 Msa0883880:CDS 25.0%
! ATTATTTACGTTCCAGAATT+TGG + chr6_1:36132654-36132673 None:intergenic 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG - chr6_1:36132841-36132860 Msa0883880:CDS 25.0%
! GTCACAAAAATTGTTGAAAA+TGG + chr6_1:36133141-36133160 None:intergenic 25.0%
! ATAACAATAGAGAGAGAAAA+AGG + chr6_1:36133206-36133225 None:intergenic 25.0%
!! AACCAATTTTCAACAACTTT+TGG + chr6_1:36133261-36133280 None:intergenic 25.0%
!!! TATACACTCTTTAAAACAAG+AGG + chr6_1:36133298-36133317 None:intergenic 25.0%
! TGATGTCCACTTATTAAAAT+GGG + chr6_1:36133353-36133372 None:intergenic 25.0%
! TTAAAGCATACATAAGTATG+TGG + chr6_1:36133412-36133431 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+CGG - chr6_1:36133797-36133816 Msa0883880:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG + chr6_1:36133829-36133848 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG - chr6_1:36133827-36133846 Msa0883880:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG + chr6_1:36133979-36133998 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG + chr6_1:36134614-36134633 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG + chr6_1:36134753-36134772 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG - chr6_1:36134757-36134776 Msa0883880:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG - chr6_1:36134790-36134809 Msa0883880:CDS 25.0%
!!! ATTATCTCTTTGAGATCATA+GGG - chr6_1:36134842-36134861 Msa0883880:CDS 25.0%
!! TGATTTTCCTAAGAATGTTA+AGG - chr6_1:36134984-36135003 Msa0883880:CDS 25.0%
!! ATAATAGCCTTAACATTCTT+AGG + chr6_1:36134994-36135013 None:intergenic 25.0%
!! TGCAATATTTAGAGCAAAAA+TGG + chr6_1:36135018-36135037 None:intergenic 25.0%
!!! TAGTTATTGTTTGTTGTGTT+TGG - chr6_1:36135123-36135142 Msa0883880:five_prime_UTR 25.0%
! CTTCTTCTTCTTTTCATCAT+TGG + chr6_1:36132678-36132697 None:intergenic 30.0%
! AAAGATCTAAAACCATCATC+AGG + chr6_1:36132794-36132813 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG - chr6_1:36132793-36132812 Msa0883880:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG - chr6_1:36132803-36132822 Msa0883880:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG - chr6_1:36132858-36132877 Msa0883880:CDS 30.0%
ATCTCACATCATTAAACCAT+AGG + chr6_1:36132877-36132896 None:intergenic 30.0%
TTATTGTCCAATAGAAAGAG+AGG - chr6_1:36133222-36133241 Msa0883880:intron 30.0%
CACCAAAAGTTGTTGAAAAT+TGG - chr6_1:36133256-36133275 Msa0883880:intron 30.0%
!!! CTGGTTTGGTTTTAAATTTG+TGG - chr6_1:36133326-36133345 Msa0883880:intron 30.0%
GTGATGTCCACTTATTAAAA+TGG + chr6_1:36133354-36133373 None:intergenic 30.0%
TTATACACAACCGAAATAGT+GGG + chr6_1:36133385-36133404 None:intergenic 30.0%
ATTATACACAACCGAAATAG+TGG + chr6_1:36133386-36133405 None:intergenic 30.0%
!! TATGCTTTAAAGTTTAGGAG+AGG - chr6_1:36133422-36133441 Msa0883880:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG - chr6_1:36133478-36133497 Msa0883880:intron 30.0%
! CTGATACCATGTAAGAATTT+TGG - chr6_1:36133534-36133553 Msa0883880:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG - chr6_1:36133539-36133558 Msa0883880:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG - chr6_1:36133540-36133559 Msa0883880:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG + chr6_1:36133650-36133669 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG + chr6_1:36133839-36133858 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG + chr6_1:36133893-36133912 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG - chr6_1:36133944-36133963 Msa0883880:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG - chr6_1:36134313-36134332 Msa0883880:intron 30.0%
CACTCAATATACACAAAATC+TGG + chr6_1:36134465-36134484 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG - chr6_1:36134562-36134581 Msa0883880:intron 30.0%
TACAAGAAACAATGTGATTC+CGG + chr6_1:36134710-36134729 None:intergenic 30.0%
CTATCCAAATTAAGAGGAAA+AGG - chr6_1:36134763-36134782 Msa0883880:CDS 30.0%
! TTCACCTTTTCCTCTTAATT+TGG + chr6_1:36134770-36134789 None:intergenic 30.0%
ATGATCTCAAAGAGATAATG+AGG + chr6_1:36134841-36134860 None:intergenic 30.0%
!! CATTATCTCTTTGAGATCAT+AGG - chr6_1:36134841-36134860 Msa0883880:CDS 30.0%
!! TTTGAGATCATAGGGTTTTA+CGG - chr6_1:36134850-36134869 Msa0883880:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG + chr6_1:36134881-36134900 None:intergenic 30.0%
! TGCTCTAAATATTGCAAACT+AGG - chr6_1:36135022-36135041 Msa0883880:CDS 30.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG + chr6_1:36132476-36132495 None:intergenic 35.0%
AAGTGAGACACATGTTATGA+CGG + chr6_1:36132585-36132604 None:intergenic 35.0%
CAGGTATCAATGAAGTTAGA+GGG - chr6_1:36132612-36132631 Msa0883880:CDS 35.0%
ATGACATTGTCGAGTAAAAG+TGG - chr6_1:36132710-36132729 Msa0883880:CDS 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG - chr6_1:36132779-36132798 Msa0883880:CDS 35.0%
ATATCGAATTGTTAAGCCTC+AGG + chr6_1:36133045-36133064 None:intergenic 35.0%
! CCTTTTTCCTCTCTTTCTAT+TGG + chr6_1:36133232-36133251 None:intergenic 35.0%
CCAATAGAAAGAGAGGAAAA+AGG - chr6_1:36133229-36133248 Msa0883880:intron 35.0%
! AAGAGTGTATAGCGAAATTC+TGG - chr6_1:36133307-36133326 Msa0883880:intron 35.0%
! TGTATAGCGAAATTCTGGTT+TGG - chr6_1:36133312-36133331 Msa0883880:intron 35.0%
!! TGTGGACCCATTTTAATAAG+TGG - chr6_1:36133344-36133363 Msa0883880:intron 35.0%
CCCAAACCAAAATTCTTACA+TGG + chr6_1:36133543-36133562 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG + chr6_1:36133578-36133597 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG - chr6_1:36133575-36133594 Msa0883880:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG - chr6_1:36133580-36133599 Msa0883880:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG + chr6_1:36133640-36133659 None:intergenic 35.0%
TGCTATTAAGTTTCCGCTAT+CGG + chr6_1:36133751-36133770 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG - chr6_1:36133841-36133860 Msa0883880:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG - chr6_1:36133888-36133907 Msa0883880:intron 35.0%
TAATCCACCGCATTAATTGT+AGG + chr6_1:36133954-36133973 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG - chr6_1:36134001-36134020 Msa0883880:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG + chr6_1:36134009-36134028 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG + chr6_1:36134014-36134033 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG - chr6_1:36134089-36134108 Msa0883880:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG - chr6_1:36134312-36134331 Msa0883880:intron 35.0%
CATAATCCCACGAAATACTT+AGG + chr6_1:36134322-36134341 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG - chr6_1:36134537-36134556 Msa0883880:intron 35.0%
CCATAGAACCACTATATTTG+TGG + chr6_1:36134573-36134592 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG - chr6_1:36134570-36134589 Msa0883880:intron 35.0%
ACAAGAAACAATGTGATTCC+GGG + chr6_1:36134709-36134728 None:intergenic 35.0%
! GGAATCACATTGTTTCTTGT+AGG - chr6_1:36134709-36134728 Msa0883880:intron 35.0%
ATAATGATGGTAGAAGTTGC+CGG + chr6_1:36134740-36134759 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG - chr6_1:36134793-36134812 Msa0883880:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG + chr6_1:36134808-36134827 None:intergenic 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG + chr6_1:36134917-36134936 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG - chr6_1:36134918-36134937 Msa0883880:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG - chr6_1:36134919-36134938 Msa0883880:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG - chr6_1:36134923-36134942 Msa0883880:CDS 35.0%
CAAATATAAGAGGTAGCTAG+TGG - chr6_1:36135085-36135104 Msa0883880:exon 35.0%
!! GCTAGTGGATTTATTTCAGT+TGG - chr6_1:36135100-36135119 Msa0883880:exon 35.0%
!!! GTTGTTTTGGAACTGTGCTT+TGG + chr6_1:36132463-36132482 None:intergenic 40.0%
GAATAGGAAGTTTAGGAACG+TGG + chr6_1:36132528-36132547 None:intergenic 40.0%
! TGGTGATGAATAGTGATGGT+GGG + chr6_1:36132556-36132575 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG + chr6_1:36132560-36132579 None:intergenic 40.0%
GCAGGTATCAATGAAGTTAG+AGG - chr6_1:36132611-36132630 Msa0883880:CDS 40.0%
!! TATACTCCTGCTTTTGTTGC+TGG - chr6_1:36132746-36132765 Msa0883880:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG - chr6_1:36132964-36132983 Msa0883880:CDS 40.0%
GGTGTGTGTATGAGTTTCAA+AGG + chr6_1:36133024-36133043 None:intergenic 40.0%
GTCCACAAGTTCTACATCAA+CGG + chr6_1:36133075-36133094 None:intergenic 40.0%
TAATAAGTGGACATCACTCG+TGG - chr6_1:36133357-36133376 Msa0883880:intron 40.0%
TAACACATAGTCTCGTACCA+AGG - chr6_1:36133696-36133715 Msa0883880:intron 40.0%
GCTATTAAGTTTCCGCTATC+GGG + chr6_1:36133750-36133769 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG - chr6_1:36133753-36133772 Msa0883880:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG - chr6_1:36133761-36133780 Msa0883880:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG + chr6_1:36133935-36133954 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG - chr6_1:36133947-36133966 Msa0883880:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG - chr6_1:36133964-36133983 Msa0883880:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG + chr6_1:36134682-36134701 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG + chr6_1:36134688-36134707 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG - chr6_1:36134688-36134707 Msa0883880:intron 40.0%
! TTGTTTCTTGTAGGCATCAC+CGG - chr6_1:36134718-36134737 Msa0883880:intron 40.0%
TATTCGTTCTCTTTCGCCAT+AGG - chr6_1:36134898-36134917 Msa0883880:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG + chr6_1:36134936-36134955 None:intergenic 40.0%
GGAGTTATGCAACTAGAGAA+TGG - chr6_1:36134944-36134963 Msa0883880:CDS 40.0%
TAGGAACGTGGAGAATGTCA+TGG + chr6_1:36132516-36132535 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG + chr6_1:36132554-36132573 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG + chr6_1:36132555-36132574 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG + chr6_1:36132557-36132576 None:intergenic 45.0%
!! ACATGTTATGACGGACATGG+TGG + chr6_1:36132576-36132595 None:intergenic 45.0%
!! GACACATGTTATGACGGACA+TGG + chr6_1:36132579-36132598 None:intergenic 45.0%
!! GGTTCTTCAAGGTGCTGTTA+CGG - chr6_1:36132814-36132833 Msa0883880:CDS 45.0%
GAAACTCATACACACACCTG+AGG - chr6_1:36133026-36133045 Msa0883880:CDS 45.0%
GTCCGTTGATGTAGAACTTG+TGG - chr6_1:36133070-36133089 Msa0883880:intron 45.0%
ACTCGTGGATCCCACTATTT+CGG - chr6_1:36133372-36133391 Msa0883880:intron 45.0%
AGTAAGCGCGTCCAACAATT+CGG - chr6_1:36133509-36133528 Msa0883880:intron 45.0%
TGGTATCAGAGCCGAATTGT+TGG + chr6_1:36133523-36133542 None:intergenic 45.0%
TAGCCTATCCAAGATCCGTT+TGG + chr6_1:36133779-36133798 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG + chr6_1:36134691-36134710 None:intergenic 45.0%
GGGGTGGGAATAGGAAGTTT+AGG + chr6_1:36132535-36132554 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG + chr6_1:36132550-36132569 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG + chr6_1:36132551-36132570 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG - chr6_1:36132593-36132612 Msa0883880:CDS 50.0%
CATAGTCTCGTACCAAGGAC+TGG - chr6_1:36133701-36133720 Msa0883880:intron 50.0%
ACACTCTGATGTCCAGTCCT+TGG + chr6_1:36133716-36133735 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG - chr6_1:36133735-36133754 Msa0883880:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG + chr6_1:36133741-36133760 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG + chr6_1:36133742-36133761 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG - chr6_1:36133773-36133792 Msa0883880:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG + chr6_1:36134666-36134685 None:intergenic 50.0%
GCAGCACCAGCAACAAAAGC+AGG + chr6_1:36132755-36132774 None:intergenic 55.0%
!!! TGCTGGTGCTGCGTCGTTTT+TGG - chr6_1:36132763-36132782 Msa0883880:CDS 55.0%
GCAAGTGGCCAAACGGATCT+TGG - chr6_1:36133768-36133787 Msa0883880:intron 55.0%
!! GTGATGGTGGGGGTGGGAAT+AGG + chr6_1:36132544-36132563 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 36132455 36135162 36132455 ID=Msa0883880;Name=Msa0883880
chr6_1 mRNA 36132455 36135162 36132455 ID=Msa0883880-mRNA-1;Parent=Msa0883880;Name=Msa0883880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=60|1|1|1|1|1|2|133|272
chr6_1 exon 36132455 36133058 36132455 ID=Msa0883880-mRNA-1:exon:8602;Parent=Msa0883880-mRNA-1
chr6_1 exon 36134755 36135162 36134755 ID=Msa0883880-mRNA-1:exon:8601;Parent=Msa0883880-mRNA-1
chr6_1 five_prime_UTR 36135103 36135162 36135103 ID=Msa0883880-mRNA-1:five_prime_utr;Parent=Msa0883880-mRNA-1
chr6_1 CDS 36134755 36135102 36134755 ID=Msa0883880-mRNA-1:cds;Parent=Msa0883880-mRNA-1
chr6_1 CDS 36132588 36133058 36132588 ID=Msa0883880-mRNA-1:cds;Parent=Msa0883880-mRNA-1
chr6_1 three_prime_UTR 36132455 36132587 36132455 ID=Msa0883880-mRNA-1:three_prime_utr;Parent=Msa0883880-mRNA-1
Gene Sequence

>Msa0883880

ATGACATTCTCCACGTTCCTAAACTTCCTATTCCCACCCCCACCATCACTATTCATCACCACCATGTCCGTCATAACATGTGTCTCACTTGCAAACGCAGGTATCAATGAAGTTAGAGGGAAGAATATGAACTATTCCAAATTCTGGAACGTAAATAATACCAATGATGAAAAGAAGAAGAAGAAGAAGAAGATGATGACATTGTCGAGTAAAAGTGGTATGTTGTTGTTGTATACTCCTGCTTTTGTTGCTGGTGCTGCGTCGTTTTTGGTGTTTCCTGATGATGGTTTTAGATCTTTGGTTCTTCAAGGTGCTGTTACGGTTCATTTCTTTAAGAGAGTTTTTGAGGTTCTATTTGTCCACAAATATAGTGGTTCTATGGCTCTTGAAACTGCAATTCCCATAACTCTAAGTTATTTTCTCTCATCTGCAACTATGATCTATACACAACACCTCACGTCGAATCTTCCAGAACCACCAATCGATCTATTGTATCCCGGAATCACATTGTTTCTTGTAGGCATCACCGGCAACTTCTACCATCATTATCTTCTATCCAAATTAAGAGGAAAAGGTGAAAAAGAATACAAGATTCCTAAAGGTGGCTTGTTTGATTTTGTGATATGTCCTCATTATCTCTTTGAGATCATAGGGTTTTACGGATTTTCCTTCATTTCTCAGACATTGTATTCGTTCTCTTTCGCCATAGGCACTACTTTTTACCTTTTGGGTAGGAGTTATGCAACTAGAGAATGGTATCTCTCTAAATTTGATGATTTTCCTAAGAATGTTAAGGCTATTATTCCATTTTTGCTCTAA

Protein sequence

>Msa0883880

MTFSTFLNFLFPPPPSLFITTMSVITCVSLANAGINEVRGKNMNYSKFWNVNNTNDEKKKKKKKMMTLSSKSGMLLLYTPAFVAGAASFLVFPDDGFRSLVLQGAVTVHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATMIYTQHLTSNLPEPPIDLLYPGITLFLVGITGNFYHHYLLSKLRGKGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSFISQTLYSFSFAIGTTFYLLGRSYATREWYLSKFDDFPKNVKAIIPFLL*