AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1293030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293030 MtrunA17_Chr8g0368491 94.203 345 9 1 1 334 1 345 0.0 662
Msa1293030 MtrunA17_Chr8g0368481 83.841 328 42 1 18 334 33 360 0.0 558
Msa1293030 MtrunA17_Chr5g0413351 59.639 332 117 3 16 334 1 328 3.09e-139 397
Msa1293030 MtrunA17_Chr3g0117481 47.472 356 161 4 1 334 1 352 2.47e-109 322
Msa1293030 MtrunA17_Chr4g0058951 47.009 351 158 6 1 329 1 345 2.09e-106 315
Msa1293030 MtrunA17_Chr7g0228251 47.319 317 158 4 18 331 7 317 1.80e-94 283
Msa1293030 MtrunA17_Chr1g0194161 38.462 325 169 6 27 327 5 322 1.16e-63 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293030 AT1G70505.4 52.367 338 144 5 3 326 14 348 4.45e-120 350
Msa1293030 AT1G70505.3 51.385 325 141 5 16 326 1 322 3.06e-112 329
Msa1293030 AT5G62960.1 47.385 325 163 4 11 329 20 342 9.21e-104 308
Msa1293030 AT1G10660.2 50.155 323 140 6 16 324 1 316 9.06e-101 300
Msa1293030 AT1G10660.1 50.155 323 140 6 16 324 1 316 9.06e-101 300
Msa1293030 AT1G10660.3 50.155 323 140 6 16 324 1 316 9.06e-101 300
Msa1293030 AT1G10660.4 50.155 323 140 6 16 324 1 316 9.06e-101 300
Msa1293030 AT5G62960.2 45.548 292 151 4 11 296 20 309 6.20e-88 266
Msa1293030 AT3G27770.1 42.581 310 159 5 21 319 10 311 1.85e-77 240
Msa1293030 AT1G70505.1 45.247 263 127 5 3 251 14 273 1.39e-69 221
Msa1293030 AT3G27770.2 45.418 251 123 4 80 319 21 268 1.54e-64 205
Msa1293030 AT1G70505.2 43.952 248 122 5 16 249 1 245 1.29e-62 200
Msa1293030 AT2G47115.1 40.824 267 139 3 63 329 50 297 7.28e-53 176

Find 78 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAATGAATAGAGAATTT+TGG 0.197437 8_3:-49885059 Msa1293030:five_prime_UTR
TCCATACAATTTGCACATTA+AGG 0.210118 8_3:-49885129 Msa1293030:five_prime_UTR
CTTTGGTCACTATTTACTTT+GGG 0.231865 8_3:-49884491 Msa1293030:CDS
ATACAACTGCATCAAGTTAT+TGG 0.234206 8_3:-49884907 Msa1293030:CDS
TCCATGCTTGTGTTTCAATT+TGG 0.238612 8_3:-49883099 Msa1293030:intron
GCATCATGTTTCTCACTATA+TGG 0.243670 8_3:-49884174 Msa1293030:CDS
AAATTTAATCATTTGACTTT+TGG 0.260877 8_3:-49882090 Msa1293030:three_prime_UTR
CATTGTTTGTAGGCTTAAAT+AGG 0.262920 8_3:-49882188 Msa1293030:three_prime_UTR
CATCTTCATATGCACCATTA+TGG 0.268077 8_3:-49882864 Msa1293030:intron
CATCAAGTTATTGGTTGAAT+TGG 0.278055 8_3:-49884898 Msa1293030:CDS
AAGGAGGAAAACAGCATTAA+TGG 0.287714 8_3:+49883364 None:intergenic
GTTGTATCTGTTGTCATTGT+TGG 0.320299 8_3:+49884923 None:intergenic
AGATGCAGTAAGCAATTATA+TGG 0.327192 8_3:-49884097 Msa1293030:CDS
TTGAGGGAATTGACCCTTCA+TGG 0.357354 8_3:-49884712 Msa1293030:CDS
ACCTTAATGTGCAAATTGTA+TGG 0.357961 8_3:+49885128 None:intergenic
TGGTTATCTAGATCATTTCC+TGG 0.359457 8_3:-49882318 Msa1293030:CDS
TCATTGTTGGTTGCCATGTA+TGG 0.370255 8_3:+49884936 None:intergenic
TCTTTCGTCCCTTCAAATAT+AGG 0.377086 8_3:-49882165 Msa1293030:three_prime_UTR
ATGGGAGTATTAGTAACTTC+AGG 0.377922 8_3:-49881863 Msa1293030:three_prime_UTR
ACTTTGGTCACTATTTACTT+TGG 0.380949 8_3:-49884492 Msa1293030:CDS
CTGGAAGGATTAGTAACTTC+AGG 0.381206 8_3:+49882125 None:intergenic
AGATTTAGATCATTGTTTGT+AGG 0.404246 8_3:-49882198 Msa1293030:three_prime_UTR
TGGATGTTCTCACTGGATAA+AGG 0.409512 8_3:+49883548 None:intergenic
CTTATATTCCTTGCTTGAGA+TGG 0.412011 8_3:+49885300 None:intergenic
GACTTTCAGGTACTTGGCAG+TGG 0.430174 8_3:-49882400 Msa1293030:intron
CTGGTATGAAATTCCTGATC+AGG 0.431887 8_3:+49884027 None:intergenic
ATTAGCATAGACATTATTCA+TGG 0.440909 8_3:-49884981 Msa1293030:exon
AAAATCAAGACTGTAATGAT+TGG 0.445159 8_3:+49883528 None:intergenic
TTCAAATGACCTATATTTGA+AGG 0.445646 8_3:+49882156 None:intergenic
GCTTGGAACACATGCGTTGA+GGG 0.454298 8_3:-49884728 Msa1293030:CDS
ACTGACTAAAAGTCCTGATC+AGG 0.477095 8_3:-49884040 Msa1293030:CDS
TTTCATACCAGGGAAATTGC+TGG 0.477383 8_3:-49884015 Msa1293030:CDS
TTATATTCCTTGCTTGAGAT+GGG 0.483724 8_3:+49885301 None:intergenic
ATTCTTGAATCTTGATGCAA+TGG 0.488035 8_3:+49885004 None:intergenic
ATATGGCTCCAGGTCTTGAA+AGG 0.492151 8_3:-49884080 Msa1293030:CDS
TATTCAATATTCAAGTATGA+AGG 0.495711 8_3:-49884824 Msa1293030:CDS
TGGGAGTATTAGTAACTTCA+GGG 0.497518 8_3:-49881862 Msa1293030:three_prime_UTR
TGACACATCATTGAATTGTA+TGG 0.503761 8_3:-49883339 Msa1293030:intron
GAACAGATTGACCTTCACTT+TGG 0.506577 8_3:-49884508 Msa1293030:intron
TGTACAATTCTTGATGATCC+AGG 0.509440 8_3:+49882300 None:intergenic
AAATTGAGAACATACCATAA+TGG 0.516836 8_3:+49882850 None:intergenic
CTGATCAGGAATTTCATACC+AGG 0.518748 8_3:-49884026 Msa1293030:CDS
TTCATTCATTTCTAACACAA+TGG 0.521261 8_3:+49885072 None:intergenic
TGTTATATGAAGATGAAGCT+TGG 0.524470 8_3:-49884745 Msa1293030:CDS
CATGGTCACCAAGCCATACA+TGG 0.525069 8_3:-49884949 Msa1293030:CDS
AGCACCTTCAGTAGCAACAT+TGG 0.529322 8_3:+49884637 None:intergenic
AAGATGACAAGTCAAGGAAA+GGG 0.529829 8_3:+49882881 None:intergenic
AAATATCAATCACTGAATGA+AGG 0.531601 8_3:-49882260 Msa1293030:three_prime_UTR
TAATGATTGGATGTTCTCAC+TGG 0.531785 8_3:+49883541 None:intergenic
GTTGGTTGCCATGTATGGCT+TGG 0.538489 8_3:+49884941 None:intergenic
AAAATAAATAAGCCGTAGCA+TGG 0.539023 8_3:+49882363 None:intergenic
GTAAGCAATTATATGGCTCC+AGG 0.541746 8_3:-49884090 Msa1293030:CDS
TATGGCTCCAGGTCTTGAAA+GGG 0.542384 8_3:-49884079 Msa1293030:CDS
TATTCATGGGTTTCATAACA+TGG 0.543747 8_3:-49884967 Msa1293030:exon
TGGAAGGATTAGTAACTTCA+GGG 0.543768 8_3:+49882126 None:intergenic
GAAGATGACAAGTCAAGGAA+AGG 0.548910 8_3:+49882880 None:intergenic
AATGTTGCTACTGAAGGTGC+TGG 0.554326 8_3:-49884635 Msa1293030:CDS
AAATATGCAAATCTAAACAC+TGG 0.556712 8_3:+49883163 None:intergenic
GACAAGTCAAGGAAAGGGTA+AGG 0.557794 8_3:+49882886 None:intergenic
TCAAATGACCTATATTTGAA+GGG 0.558941 8_3:+49882157 None:intergenic
GTCTAAGCCCATCTCAAGCA+AGG 0.560088 8_3:-49885308 Msa1293030:five_prime_UTR
TTTGGTCACTATTTACTTTG+GGG 0.562730 8_3:-49884490 Msa1293030:intron
CTGCATTTGTGATTATTCAG+TGG 0.563990 8_3:-49883126 Msa1293030:CDS
TCTAAAACCCTTTCAAGACC+TGG 0.572549 8_3:+49884072 None:intergenic
ACCAAATTGAAACACAAGCA+TGG 0.576064 8_3:+49883098 None:intergenic
TTAGCATAGACATTATTCAT+GGG 0.576516 8_3:-49884980 Msa1293030:exon
TATAAACAAGTAACCATGAA+GGG 0.578500 8_3:+49884699 None:intergenic
CATATGAAGATGACAAGTCA+AGG 0.592413 8_3:+49882875 None:intergenic
AGCTTGGAACACATGCGTTG+AGG 0.594105 8_3:-49884729 Msa1293030:CDS
CTATAAACAAGTAACCATGA+AGG 0.602239 8_3:+49884698 None:intergenic
ACATACACCAGCAATTTCCC+TGG 0.622121 8_3:+49884008 None:intergenic
GTAAATAGTGACCAAAGTGA+AGG 0.623574 8_3:+49884497 None:intergenic
ATTGCCAATGTTGCTACTGA+AGG 0.625255 8_3:-49884641 Msa1293030:CDS
TTTGGTGGAAGAACAGTCAA+CGG 0.654336 8_3:-49884129 Msa1293030:CDS
TGATCAGGAATTTCATACCA+GGG 0.670283 8_3:-49884025 Msa1293030:CDS
GAAAATCATCAAGAAGCACA+AGG 0.694038 8_3:-49884770 Msa1293030:CDS
TCAATGATGTGTCACCAAGG+AGG 0.697774 8_3:+49883348 None:intergenic
AATTCAATGATGTGTCACCA+AGG 0.698539 8_3:+49883345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAACACAAAAAATT+TGG - chr8_3:49883189-49883208 Msa1293030:intron 10.0%
!! AAATAGATTTATAGTTATAA+TGG + chr8_3:49884584-49884603 None:intergenic 10.0%
!! AATATTAATCATATGAAAAA+TGG + chr8_3:49885441-49885460 None:intergenic 10.0%
!! AATAAAAAAAGCAATTATTG+AGG - chr8_3:49882943-49882962 Msa1293030:intron 15.0%
!! ATAAAAAAAGCAATTATTGA+GGG - chr8_3:49882944-49882963 Msa1293030:intron 15.0%
!! AAATTACCTGATAAATTATT+TGG + chr8_3:49883365-49883384 None:intergenic 15.0%
!!! AAATTTAATCATTTGACTTT+TGG - chr8_3:49885246-49885265 Msa1293030:intron 15.0%
!! AGAAAAAAAATAGGAAAGAA+AGG + chr8_3:49881951-49881970 None:intergenic 20.0%
!!! ACTCTTATACATACTTTTTT+TGG - chr8_3:49882172-49882191 Msa1293030:three_prime_UTR 20.0%
!!! AATGAATGAATAGAGAATTT+TGG - chr8_3:49882277-49882296 Msa1293030:exon 20.0%
!! TATTCAATATTCAAGTATGA+AGG - chr8_3:49882512-49882531 Msa1293030:intron 20.0%
!! TTAAGCATATTTGAATAGTT+TGG - chr8_3:49882759-49882778 Msa1293030:intron 20.0%
!! AGAAAAACTAAAATTAGTTG+CGG + chr8_3:49883057-49883076 None:intergenic 20.0%
!! TTTAAACACAAAAAATTTGG+TGG - chr8_3:49883192-49883211 Msa1293030:intron 20.0%
!!! CATTTTCCAAATAATTTATC+AGG - chr8_3:49883356-49883375 Msa1293030:CDS 20.0%
!!! TACAATTTTCTACAATATCA+AGG - chr8_3:49883535-49883554 Msa1293030:CDS 20.0%
!! AACTAATGTAGAACTTAATT+TGG - chr8_3:49883615-49883634 Msa1293030:intron 20.0%
!!! AATTGTTTCTTATCAAATTC+AGG - chr8_3:49883673-49883692 Msa1293030:intron 20.0%
!! ATAATAAAAAAGAGGATGTT+AGG + chr8_3:49884268-49884287 None:intergenic 20.0%
!!! CAATTTGTTTAAGTATTTGA+TGG - chr8_3:49884720-49884739 Msa1293030:CDS 20.0%
!! AAAACCATTCACAATTTATA+TGG - chr8_3:49884834-49884853 Msa1293030:CDS 20.0%
!!! TTTTCCATATAAATTGTGAA+TGG + chr8_3:49884841-49884860 None:intergenic 20.0%
!!! ATCTTCAAAATGATTTTGTT+AGG + chr8_3:49885117-49885136 None:intergenic 20.0%
!!! CAAATGATTAAATTTTGTAG+TGG + chr8_3:49885241-49885260 None:intergenic 20.0%
!! CATATGATTAATATTTGCAA+TGG - chr8_3:49885446-49885465 Msa1293030:five_prime_UTR 20.0%
! AAAAATAGGAAAGAAAGGTT+TGG + chr8_3:49881946-49881965 None:intergenic 25.0%
!!! TGAATAAGCTCAGTTTTTTA+TGG - chr8_3:49882081-49882100 Msa1293030:three_prime_UTR 25.0%
!!! GTTTTTTATGGCTCATTTTT+TGG - chr8_3:49882093-49882112 Msa1293030:three_prime_UTR 25.0%
!! TTGTTTGAAGAAGAGAATTT+TGG + chr8_3:49882125-49882144 None:intergenic 25.0%
!!! ATACTTTTTTTGGTTGCTAT+AGG - chr8_3:49882182-49882201 Msa1293030:three_prime_UTR 25.0%
! TTCATTCATTTCTAACACAA+TGG + chr8_3:49882267-49882286 None:intergenic 25.0%
! ATTAGCATAGACATTATTCA+TGG - chr8_3:49882355-49882374 Msa1293030:CDS 25.0%
! TTAGCATAGACATTATTCAT+GGG - chr8_3:49882356-49882375 Msa1293030:CDS 25.0%
! TATAAACAAGTAACCATGAA+GGG + chr8_3:49882640-49882659 None:intergenic 25.0%
! TTATTGAGGGAAATATAGAA+AGG - chr8_3:49882957-49882976 Msa1293030:intron 25.0%
! TATTGAGGGAAATATAGAAA+GGG - chr8_3:49882958-49882977 Msa1293030:intron 25.0%
!!! TTCTCACTGATTTTGTATTT+TGG - chr8_3:49883760-49883779 Msa1293030:intron 25.0%
! AAAATCAAGACTGTAATGAT+TGG + chr8_3:49883811-49883830 None:intergenic 25.0%
! AAATATGCAAATCTAAACAC+TGG + chr8_3:49884176-49884195 None:intergenic 25.0%
!! GATTTGCATATTTTGTATTG+TGG - chr8_3:49884183-49884202 Msa1293030:intron 25.0%
! AAATTGAGAACATACCATAA+TGG + chr8_3:49884489-49884508 None:intergenic 25.0%
!! CATTCAGTGATTGATATTTT+TGG + chr8_3:49885075-49885094 None:intergenic 25.0%
! AAATATCAATCACTGAATGA+AGG - chr8_3:49885076-49885095 Msa1293030:five_prime_UTR 25.0%
!! ATTTTGTTAGGCTATCTAAA+TGG + chr8_3:49885105-49885124 None:intergenic 25.0%
! AGATTTAGATCATTGTTTGT+AGG - chr8_3:49885138-49885157 Msa1293030:intron 25.0%
! TCAAATGACCTATATTTGAA+GGG + chr8_3:49885182-49885201 None:intergenic 25.0%
! TTCAAATGACCTATATTTGA+AGG + chr8_3:49885183-49885202 None:intergenic 25.0%
! TCAAATGACTTATATTTGCA+GGG + chr8_3:49885379-49885398 None:intergenic 25.0%
! TTCAAATGACTTATATTTGC+AGG + chr8_3:49885380-49885399 None:intergenic 25.0%
! TAATATTTGCAATGGCAAAA+TGG - chr8_3:49885454-49885473 Msa1293030:five_prime_UTR 25.0%
! AATATTTGCAATGGCAAAAT+GGG - chr8_3:49885455-49885474 Msa1293030:five_prime_UTR 25.0%
! TGCTTTGCTTCATCATTTTA+TGG + chr8_3:49881886-49881905 None:intergenic 30.0%
TTATATTCCTTGCTTGAGAT+GGG + chr8_3:49882038-49882057 None:intergenic 30.0%
TCCATACAATTTGCACATTA+AGG - chr8_3:49882207-49882226 Msa1293030:three_prime_UTR 30.0%
ACCTTAATGTGCAAATTGTA+TGG + chr8_3:49882211-49882230 None:intergenic 30.0%
CACAATGGAAAAAAGAATGA+TGG + chr8_3:49882252-49882271 None:intergenic 30.0%
ATTCTTGAATCTTGATGCAA+TGG + chr8_3:49882335-49882354 None:intergenic 30.0%
TATTCATGGGTTTCATAACA+TGG - chr8_3:49882369-49882388 Msa1293030:CDS 30.0%
ATACAACTGCATCAAGTTAT+TGG - chr8_3:49882429-49882448 Msa1293030:intron 30.0%
! CATCAAGTTATTGGTTGAAT+TGG - chr8_3:49882438-49882457 Msa1293030:intron 30.0%
TGTTATATGAAGATGAAGCT+TGG - chr8_3:49882591-49882610 Msa1293030:intron 30.0%
CTATAAACAAGTAACCATGA+AGG + chr8_3:49882641-49882660 None:intergenic 30.0%
!!! CATTTCTTTTGTTGTTCTCT+TGG - chr8_3:49882664-49882683 Msa1293030:intron 30.0%
ACTTTGGTCACTATTTACTT+TGG - chr8_3:49882844-49882863 Msa1293030:intron 30.0%
CTTTGGTCACTATTTACTTT+GGG - chr8_3:49882845-49882864 Msa1293030:intron 30.0%
TTTGGTCACTATTTACTTTG+GGG - chr8_3:49882846-49882865 Msa1293030:intron 30.0%
AGATGCAGTAAGCAATTATA+TGG - chr8_3:49883239-49883258 Msa1293030:intron 30.0%
!! GGTTTTCGATGTTTCTAAAA+TGG - chr8_3:49883472-49883491 Msa1293030:intron 30.0%
TCAAATAGAAGTCGTCTTAA+CGG + chr8_3:49883579-49883598 None:intergenic 30.0%
! TCTATTTGAAACCTCTGATT+AGG - chr8_3:49883590-49883609 Msa1293030:CDS 30.0%
TGTTTCTTATCAAATTCAGG+AGG - chr8_3:49883676-49883695 Msa1293030:intron 30.0%
! TTTTCATTATAGACTTGTGC+AGG - chr8_3:49883729-49883748 Msa1293030:intron 30.0%
! AGTATCATCAACATTTTCAC+TGG - chr8_3:49883834-49883853 Msa1293030:intron 30.0%
TGACACATCATTGAATTGTA+TGG - chr8_3:49883997-49884016 Msa1293030:intron 30.0%
! TAAGTATTTGATGGTATTGC+CGG - chr8_3:49884729-49884748 Msa1293030:CDS 30.0%
! ATACATACCTCTTGACATTT+TGG - chr8_3:49884914-49884933 Msa1293030:CDS 30.0%
AAAATAAATAAGCCGTAGCA+TGG + chr8_3:49884976-49884995 None:intergenic 30.0%
!! TAGTGAAGTTGAAGCATTTT+TGG - chr8_3:49884998-49885017 Msa1293030:five_prime_UTR 30.0%
CATTGTTTGTAGGCTTAAAT+AGG - chr8_3:49885148-49885167 Msa1293030:intron 30.0%
!! TTTGACTTTTGGTCCTAATT+AGG - chr8_3:49885257-49885276 Msa1293030:intron 30.0%
CTCAGCAAAAAAACCTAATT+AGG + chr8_3:49885273-49885292 None:intergenic 30.0%
!!! CTAATTAGGTTTTTTTGCTG+AGG - chr8_3:49885271-49885290 Msa1293030:intron 30.0%
CTTATATTCCTTGCTTGAGA+TGG + chr8_3:49882039-49882058 None:intergenic 35.0%
GTTGTATCTGTTGTCATTGT+TGG + chr8_3:49882416-49882435 None:intergenic 35.0%
! GATTCTTCTTTTGTGCACTA+TGG - chr8_3:49882462-49882481 Msa1293030:intron 35.0%
! GAAAATCATCAAGAAGCACA+AGG - chr8_3:49882566-49882585 Msa1293030:intron 35.0%
GTAAATAGTGACCAAAGTGA+AGG + chr8_3:49882842-49882861 None:intergenic 35.0%
!! TCACTATTTACTTTGGGGTA+AGG - chr8_3:49882851-49882870 Msa1293030:intron 35.0%
! TTTAGTGATGGAATCAGAGA+AGG + chr8_3:49882996-49883015 None:intergenic 35.0%
CTCGTCACTAAATTTAGTGA+TGG + chr8_3:49883008-49883027 None:intergenic 35.0%
CATCACTAAATTTAGTGACG+AGG - chr8_3:49883006-49883025 Msa1293030:intron 35.0%
GCATCATGTTTCTCACTATA+TGG - chr8_3:49883162-49883181 Msa1293030:CDS 35.0%
TGATCAGGAATTTCATACCA+GGG - chr8_3:49883311-49883330 Msa1293030:intron 35.0%
TATGTGATCGTGATCTGTAA+CGG - chr8_3:49883451-49883470 Msa1293030:intron 35.0%
CAATATCAAGGATTGTGACA+TGG - chr8_3:49883547-49883566 Msa1293030:CDS 35.0%
ACATTAGTTGACCTAATCAG+AGG + chr8_3:49883604-49883623 None:intergenic 35.0%
TAATGATTGGATGTTCTCAC+TGG + chr8_3:49883798-49883817 None:intergenic 35.0%
AAGGAGGAAAACAGCATTAA+TGG + chr8_3:49883975-49883994 None:intergenic 35.0%
!!! ATTAATGCTGTTTTCCTCCT+TGG - chr8_3:49883974-49883993 Msa1293030:intron 35.0%
AATTCAATGATGTGTCACCA+AGG + chr8_3:49883994-49884013 None:intergenic 35.0%
CTGCATTTGTGATTATTCAG+TGG - chr8_3:49884210-49884229 Msa1293030:intron 35.0%
TCCATGCTTGTGTTTCAATT+TGG - chr8_3:49884237-49884256 Msa1293030:intron 35.0%
ACCAAATTGAAACACAAGCA+TGG + chr8_3:49884241-49884260 None:intergenic 35.0%
TGATAACCTTCATTTGTCAC+AGG - chr8_3:49884424-49884443 Msa1293030:intron 35.0%
AAGATGACAAGTCAAGGAAA+GGG + chr8_3:49884458-49884477 None:intergenic 35.0%
CATATGAAGATGACAAGTCA+AGG + chr8_3:49884464-49884483 None:intergenic 35.0%
CATCTTCATATGCACCATTA+TGG - chr8_3:49884472-49884491 Msa1293030:intron 35.0%
TCATTGAACAGAGTTTGATG+AGG - chr8_3:49884542-49884561 Msa1293030:intron 35.0%
GTAACAACATATGCTCACAT+AGG + chr8_3:49884635-49884654 None:intergenic 35.0%
CATATGTTGTTACCTTACTC+AGG - chr8_3:49884642-49884661 Msa1293030:CDS 35.0%
AGTGCTCAACCTAACAATAT+TGG - chr8_3:49884669-49884688 Msa1293030:CDS 35.0%
CCTAACAATATTGGTATTGC+CGG - chr8_3:49884678-49884697 Msa1293030:CDS 35.0%
TGAAAGTCCAAAATGTCAAG+AGG + chr8_3:49884924-49884943 None:intergenic 35.0%
! TCTTGACATTTTGGACTTTC+AGG - chr8_3:49884923-49884942 Msa1293030:CDS 35.0%
!! ATTTTGGACTTTCAGGTACT+TGG - chr8_3:49884930-49884949 Msa1293030:CDS 35.0%
TGGTTATCTAGATCATTTCC+TGG - chr8_3:49885018-49885037 Msa1293030:five_prime_UTR 35.0%
! TGTACAATTCTTGATGATCC+AGG + chr8_3:49885039-49885058 None:intergenic 35.0%
TCTTTCGTCCCTTCAAATAT+AGG - chr8_3:49885171-49885190 Msa1293030:intron 35.0%
! TGGAAGGATTAGTAACTTCA+GGG + chr8_3:49885213-49885232 None:intergenic 35.0%
! TAAATTTTGTAGTGGCAGAC+TGG + chr8_3:49885233-49885252 None:intergenic 35.0%
!!! TTAGGTTTTTTTGCTGAGGT+AGG - chr8_3:49885275-49885294 Msa1293030:intron 35.0%
!! ATGGGAGTATTAGTAACTTC+AGG - chr8_3:49885473-49885492 Msa1293030:five_prime_UTR 35.0%
!! TGGGAGTATTAGTAACTTCA+GGG - chr8_3:49885474-49885493 Msa1293030:five_prime_UTR 35.0%
! TCATTGTTGGTTGCCATGTA+TGG + chr8_3:49882403-49882422 None:intergenic 40.0%
ATTGCCAATGTTGCTACTGA+AGG - chr8_3:49882695-49882714 Msa1293030:intron 40.0%
GAACAGATTGACCTTCACTT+TGG - chr8_3:49882828-49882847 Msa1293030:intron 40.0%
TAGTGACGAGGAAATTAGAG+AGG - chr8_3:49883018-49883037 Msa1293030:intron 40.0%
TTTGGTGGAAGAACAGTCAA+CGG - chr8_3:49883207-49883226 Msa1293030:intron 40.0%
GTAAGCAATTATATGGCTCC+AGG - chr8_3:49883246-49883265 Msa1293030:intron 40.0%
! TCTAAAACCCTTTCAAGACC+TGG + chr8_3:49883267-49883286 None:intergenic 40.0%
! TCAGGACTTTTAGTCAGTTC+AGG + chr8_3:49883294-49883313 None:intergenic 40.0%
ACTGACTAAAAGTCCTGATC+AGG - chr8_3:49883296-49883315 Msa1293030:intron 40.0%
CTGGTATGAAATTCCTGATC+AGG + chr8_3:49883312-49883331 None:intergenic 40.0%
CTGATCAGGAATTTCATACC+AGG - chr8_3:49883310-49883329 Msa1293030:intron 40.0%
TTTCATACCAGGGAAATTGC+TGG - chr8_3:49883321-49883340 Msa1293030:intron 40.0%
TGGCAATGTGATCGAAATTG+AGG - chr8_3:49883492-49883511 Msa1293030:intron 40.0%
GATCGAAATTGAGGTTGCAT+CGG - chr8_3:49883501-49883520 Msa1293030:intron 40.0%
TGGATGTTCTCACTGGATAA+AGG + chr8_3:49883791-49883810 None:intergenic 40.0%
CTGGAAATCTCTGCATGTTT+AGG + chr8_3:49884157-49884176 None:intergenic 40.0%
TAACCTTCATTTGTCACAGG+TGG - chr8_3:49884427-49884446 Msa1293030:intron 40.0%
GAAGATGACAAGTCAAGGAA+AGG + chr8_3:49884459-49884478 None:intergenic 40.0%
CCGGCAATACCAATATTGTT+AGG + chr8_3:49884681-49884700 None:intergenic 40.0%
! CTCATGCATTTTCCATGCTA+CGG - chr8_3:49884961-49884980 Msa1293030:CDS 40.0%
! CTGGAAGGATTAGTAACTTC+AGG + chr8_3:49885214-49885233 None:intergenic 40.0%
!! GGTAGTTGGTTGGCTTAAAT+AGG - chr8_3:49885345-49885364 Msa1293030:five_prime_UTR 40.0%
TTGAGGGAATTGACCCTTCA+TGG - chr8_3:49882624-49882643 Msa1293030:intron 45.0%
AGCACCTTCAGTAGCAACAT+TGG + chr8_3:49882702-49882721 None:intergenic 45.0%
! AATGTTGCTACTGAAGGTGC+TGG - chr8_3:49882701-49882720 Msa1293030:intron 45.0%
ATATGGCTCCAGGTCTTGAA+AGG - chr8_3:49883256-49883275 Msa1293030:intron 45.0%
TATGGCTCCAGGTCTTGAAA+GGG - chr8_3:49883257-49883276 Msa1293030:intron 45.0%
ACATACACCAGCAATTTCCC+TGG + chr8_3:49883331-49883350 None:intergenic 45.0%
AGGGAAATTGCTGGTGTATG+TGG - chr8_3:49883330-49883349 Msa1293030:intron 45.0%
TCAATGATGTGTCACCAAGG+AGG + chr8_3:49883991-49884010 None:intergenic 45.0%
GACAAGTCAAGGAAAGGGTA+AGG + chr8_3:49884453-49884472 None:intergenic 45.0%
TGAGCACTTTCACCTGAGTA+AGG + chr8_3:49884657-49884676 None:intergenic 45.0%
! TTTTGTAGTGGCAGACTGGA+AGG + chr8_3:49885229-49885248 None:intergenic 45.0%
CCAATCATCACTTGCCACAT+GGG + chr8_3:49885321-49885340 None:intergenic 45.0%
CCATGTGGCAAGTGATGATT+GGG - chr8_3:49885319-49885338 Msa1293030:five_prime_UTR 45.0%
!! ATTTATATAAGAAAAAAAAT+AGG + chr8_3:49881960-49881979 None:intergenic 5.0%
!! TAATAATAATAATAAAAAAG+AGG + chr8_3:49884276-49884295 None:intergenic 5.0%
ATGGTGAGAGAGAGAGAGAG+AGG + chr8_3:49881867-49881886 None:intergenic 50.0%
GTCTAAGCCCATCTCAAGCA+AGG - chr8_3:49882028-49882047 Msa1293030:intron 50.0%
CATGGTCACCAAGCCATACA+TGG - chr8_3:49882387-49882406 Msa1293030:CDS 50.0%
GTTGGTTGCCATGTATGGCT+TGG + chr8_3:49882398-49882417 None:intergenic 50.0%
AGCTTGGAACACATGCGTTG+AGG - chr8_3:49882607-49882626 Msa1293030:intron 50.0%
GCTTGGAACACATGCGTTGA+GGG - chr8_3:49882608-49882627 Msa1293030:intron 50.0%
! GAGGTTGCATCGGTCACATT+TGG - chr8_3:49883511-49883530 Msa1293030:intron 50.0%
AGGCCACCTGTGACAAATGA+AGG + chr8_3:49884433-49884452 None:intergenic 50.0%
! TTGGTATTGCCGGTTGAGCT+AGG - chr8_3:49884688-49884707 Msa1293030:CDS 50.0%
TCCGTAAGACCTAGCTCAAC+CGG + chr8_3:49884700-49884719 None:intergenic 50.0%
! ATGGTATTGCCGGTTGAGCT+AGG - chr8_3:49884739-49884758 Msa1293030:CDS 50.0%
TCCGTAAGACCTAGCTCAAC+CGG + chr8_3:49884700-49884719 None:intergenic 50.0%
! GACTTTCAGGTACTTGGCAG+TGG - chr8_3:49884936-49884955 Msa1293030:CDS 50.0%
CCCATGTGGCAAGTGATGAT+TGG - chr8_3:49885318-49885337 Msa1293030:five_prime_UTR 50.0%
CCCAATCATCACTTGCCACA+TGG + chr8_3:49885322-49885341 None:intergenic 50.0%
TGATGATTGGGCGAGGTAGT+TGG - chr8_3:49885331-49885350 Msa1293030:five_prime_UTR 50.0%
GCCGGTTGAGCTAGGTCTTA+CGG - chr8_3:49884696-49884715 Msa1293030:CDS 55.0%
GCCGGTTGAGCTAGGTCTTA+CGG - chr8_3:49884696-49884715 Msa1293030:CDS 55.0%
GTAGGCTGTCATTAGCGACG+TGG - chr8_3:49885293-49885312 Msa1293030:intron 55.0%
TGGCAAGTGATGATTGGGCG+AGG - chr8_3:49885324-49885343 Msa1293030:five_prime_UTR 55.0%
GATTGGGCGAGGTAGTTGGT+TGG - chr8_3:49885335-49885354 Msa1293030:five_prime_UTR 55.0%
TTAGCGACGTGGTGCCCATG+TGG - chr8_3:49885304-49885323 Msa1293030:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 49881855 49885503 49881855 ID=Msa1293030;Name=Msa1293030
chr8_3 mRNA 49881855 49885503 49881855 ID=Msa1293030-mRNA-1;Parent=Msa1293030;Name=Msa1293030-mRNA-1;_AED=0.25;_eAED=0.25;_QI=375|0.88|0.9|1|0.77|0.6|10|247|334
chr8_3 exon 49881855 49881885 49881855 ID=Msa1293030-mRNA-1:exon:13866;Parent=Msa1293030-mRNA-1
chr8_3 exon 49882080 49882413 49882080 ID=Msa1293030-mRNA-1:exon:13865;Parent=Msa1293030-mRNA-1
chr8_3 exon 49882865 49882912 49882865 ID=Msa1293030-mRNA-1:exon:13864;Parent=Msa1293030-mRNA-1
chr8_3 exon 49883100 49883191 49883100 ID=Msa1293030-mRNA-1:exon:13863;Parent=Msa1293030-mRNA-1
chr8_3 exon 49883340 49883405 49883340 ID=Msa1293030-mRNA-1:exon:13862;Parent=Msa1293030-mRNA-1
chr8_3 exon 49883528 49883617 49883528 ID=Msa1293030-mRNA-1:exon:13861;Parent=Msa1293030-mRNA-1
chr8_3 exon 49884014 49884199 49884014 ID=Msa1293030-mRNA-1:exon:13860;Parent=Msa1293030-mRNA-1
chr8_3 exon 49884491 49884524 49884491 ID=Msa1293030-mRNA-1:exon:13859;Parent=Msa1293030-mRNA-1
chr8_3 exon 49884614 49885154 49884614 ID=Msa1293030-mRNA-1:exon:13858;Parent=Msa1293030-mRNA-1
chr8_3 exon 49885299 49885503 49885299 ID=Msa1293030-mRNA-1:exon:13857;Parent=Msa1293030-mRNA-1
chr8_3 five_prime_UTR 49885299 49885503 49885299 ID=Msa1293030-mRNA-1:five_prime_utr;Parent=Msa1293030-mRNA-1
chr8_3 five_prime_UTR 49884985 49885154 49884985 ID=Msa1293030-mRNA-1:five_prime_utr;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49884614 49884984 49884614 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49884491 49884524 49884491 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49884014 49884199 49884014 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49883528 49883617 49883528 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49883340 49883405 49883340 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49883100 49883191 49883100 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49882865 49882912 49882865 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 CDS 49882296 49882413 49882296 ID=Msa1293030-mRNA-1:cds;Parent=Msa1293030-mRNA-1
chr8_3 three_prime_UTR 49882080 49882295 49882080 ID=Msa1293030-mRNA-1:three_prime_utr;Parent=Msa1293030-mRNA-1
chr8_3 three_prime_UTR 49881855 49881885 49881855 ID=Msa1293030-mRNA-1:three_prime_utr;Parent=Msa1293030-mRNA-1
Gene Sequence

>Msa1293030

ATGGGTTTCATAACATGGTCACCAAGCCATACATGGCAACCAACAATGACAACAGATACAACTGCATCAAGTTATTGGTTGAATTGGAGATTCTTCTTTTGTGCACTATGGATTTTCATTTCAATGACATTAGCATCATATTCAATATTCAAGTATGAAGGATTCAACAAACAAAGATCTTCTGAGAGAGATGAAAATCATCAAGAAGCACAAGGATTGTTATATGAAGATGAAGCTTGGAACACATGCGTTGAGGGAATTGACCCTTCATGGTTACTTGTTTATAGAATCATTTCTTTTGTTGTTCTCTTGGCTTTGATCATTGCCAATGTTGCTACTGAAGGTGCTGGAATATTATACTACTACACTCAATTGACCTTCACTTTGGTCACTATTTACTTTGGGCTTGCATCATGTTTCTCACTATATGGATGTTTATTTAAACACAAAAAATTTGGTGGAAGAACAGTCAACGGTGCTTCTTTAGATGCAGTAAGCAATTATATGGCTCCAGGTCTTGAAAGGGTTTTAGATATTCCTGAACTGACTAAAAGTCCTGATCAGGAATTTCATACCAGGGAAATTGCTGGTACTTGTGCAGGTGCTGTGTTTCTCACTGATTTTGTATTTTGGTTTGTCCTTTATCCAGTGAGAACATCCAATCATTACAGTCTTGATTTTTTGATTTTTTGTATGCACACCATTAATGCTGTTTTCCTCCTTGGTGACACATCATTGAATTGTATGAGATTTCCAGTGTTTAGATTTGCATATTTTGTATTGTGGACAGCTGCATTTGTGATTATTCAGTGGATAATCCATGCTTGTGTTTCAATTTGGTGGCCTTACCCTTTCCTTGACTTGTCATCTTCATATGCACCATTATGGTACTTGGCAGTGGCTCTCATGCATTTTCCATGCTACGGCTTATTTATTTTGATAGTGAAGTTGAAGCATTTTTGGTTATCTAGATCATTTCCTGGATCATCAAGAATTGTACATTGA

Protein sequence

>Msa1293030

MGFITWSPSHTWQPTMTTDTTASSYWLNWRFFFCALWIFISMTLASYSIFKYEGFNKQRSSERDENHQEAQGLLYEDEAWNTCVEGIDPSWLLVYRIISFVVLLALIIANVATEGAGILYYYTQLTFTLVTIYFGLASCFSLYGCLFKHKKFGGRTVNGASLDAVSNYMAPGLERVLDIPELTKSPDQEFHTREIAGTCAGAVFLTDFVFWFVLYPVRTSNHYSLDFLIFCMHTINAVFLLGDTSLNCMRFPVFRFAYFVLWTAAFVIIQWIIHACVSIWWPYPFLDLSSSYAPLWYLAVALMHFPCYGLFILIVKLKHFWLSRSFPGSSRIVH*