AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0911440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911440 MtrunA17_Chr6g0464451 94.465 271 14 1 1 271 42 311 1.40e-178 494
Msa0911440 MtrunA17_Chr6g0464411 73.063 271 70 1 1 271 1 268 2.46e-148 416
Msa0911440 MtrunA17_Chr6g0464441 77.397 146 33 0 126 271 1 146 7.51e-81 240
Msa0911440 MtrunA17_Chr6g0464421 61.538 117 42 1 1 117 1 114 5.89e-46 151
Msa0911440 MtrunA17_Chr7g0241571 42.991 107 59 2 166 271 160 265 1.27e-19 85.9
Msa0911440 MtrunA17_Chr4g0031681 42.045 88 49 2 184 270 174 260 3.48e-14 72.0
Msa0911440 MtrunA17_Chr5g0440411 28.655 171 113 4 108 270 141 310 1.14e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0911440 AT5G16010.1 59.245 265 105 2 8 271 6 268 8.17e-116 333
Msa0911440 AT2G38050.1 32.710 107 71 1 166 271 156 262 2.03e-14 71.6
Msa0911440 AT3G55360.1 31.579 171 108 5 108 270 141 310 1.83e-13 69.7

Find 51 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTAACGTTCCAGAATT+TGG 0.142680 6_2:-17785334 None:intergenic
TACAAGAAACAATGCGATTC+CGG 0.248460 6_2:-17787114 None:intergenic
ATAATAGCCTTGACATTCTT+AGG 0.257430 6_2:-17787398 None:intergenic
ATTTAAACTATTCCAAATTC+TGG 0.284989 6_2:+17785322 Msa0911440:CDS
GTATAAGAGGTTAATACATT+TGG 0.337688 6_2:+17787551 Msa0911440:three_prime_UTR
TTTAGATCTTTGGTTCTTCA+AGG 0.346488 6_2:+17785483 Msa0911440:CDS
CCACAAATATAGTGGTTCTA+TGG 0.348368 6_2:+17786977 Msa0911440:CDS
AGAAAATAACTTAGAGTTAT+GGG 0.350393 6_2:-17787017 None:intergenic
TATCTTCTATCCAAATTAAG+AGG 0.370538 6_2:+17787164 Msa0911440:CDS
AAATCAAACAAGCCACCTTT+AGG 0.388800 6_2:-17787212 None:intergenic
GTGATTATGTTGTGTATAAG+AGG 0.392946 6_2:+17787538 Msa0911440:three_prime_UTR
GAGAAAATAACTTAGAGTTA+TGG 0.393676 6_2:-17787018 None:intergenic
CTATTTGTCCACAAATATAG+TGG 0.398112 6_2:+17786969 Msa0911440:CDS
ACAAGAAACAATGCGATTCC+GGG 0.404552 6_2:-17787113 None:intergenic
AATAGATCGATTGGTGGTTC+TGG 0.413052 6_2:-17787086 None:intergenic
TTGTGTTATTCAAATATAAG+AGG 0.423484 6_2:+17787474 Msa0911440:three_prime_UTR
TGTTCTAAATATTGCAAGCT+AGG 0.425611 6_2:+17787429 Msa0911440:exon
GGAATCGCATTGTTTCTTGT+AGG 0.434455 6_2:+17787116 Msa0911440:CDS
TATTCGTTCTCTTTCGCCAT+AGG 0.453501 6_2:+17787305 Msa0911440:CDS
CTATCCAAATTAAGAGGAAA+AGG 0.465185 6_2:+17787170 Msa0911440:CDS
GCAGGTATCAATGAAGTTAG+AGG 0.469039 6_2:+17785294 Msa0911440:CDS
CCATAGAACCACTATATTTG+TGG 0.471338 6_2:-17786977 None:intergenic
GGTTCTTCAAGGTGCTGTTA+CGG 0.475927 6_2:+17785494 Msa0911440:CDS
TTGTTTCTTGTAGGCGTCAC+CGG 0.481108 6_2:+17787125 Msa0911440:CDS
AAAGATCTAAAACCATCATC+AGG 0.489846 6_2:-17785471 None:intergenic
GGTGATGAATAGTGATGGTG+GGG 0.492390 6_2:-17785235 None:intergenic
GCTTGTGGACTTATTTCAGT+TGG 0.495448 6_2:+17787499 Msa0911440:three_prime_UTR
TTGCATAACTCCTACCCAAA+AGG 0.506130 6_2:-17787340 None:intergenic
ATACAATGTCTGAGAAATGA+AGG 0.509558 6_2:-17787285 None:intergenic
GGGGTGGGAATAGGAAGCTT+AGG 0.516472 6_2:-17785215 None:intergenic
AAAGAATACAAGATTCCTAA+AGG 0.529482 6_2:+17787197 Msa0911440:CDS
CCGGGATACAATAGATCGAT+TGG 0.532651 6_2:-17787095 None:intergenic
GCAGCACAAGCAACAAAAGC+AGG 0.536471 6_2:-17785432 None:intergenic
ATAATGATGGTAGAAGTTGC+CGG 0.544164 6_2:-17787144 None:intergenic
ATTTGGATAGAAGATAATGA+TGG 0.547206 6_2:-17787157 None:intergenic
TGGTGATGAATAGTGATGGT+GGG 0.547912 6_2:-17785236 None:intergenic
ATGACATTGTCGAGTAAAAG+TGG 0.551017 6_2:+17785390 Msa0911440:CDS
GGAGTTATGCAACTAGAGAA+TGG 0.568134 6_2:+17787351 Msa0911440:CDS
GTGGTGATGAATAGTGATGG+TGG 0.569321 6_2:-17785237 None:intergenic
CAAATATAAGAGGTAGCTTG+TGG 0.582618 6_2:+17787484 Msa0911440:three_prime_UTR
GTGATGAATAGTGATGGTGG+GGG 0.585799 6_2:-17785234 None:intergenic
CCAATCGATCTATTGTATCC+CGG 0.590454 6_2:+17787095 Msa0911440:CDS
GAATACAAGATTCCTAAAGG+TGG 0.614245 6_2:+17787200 Msa0911440:CDS
TAGGAACGTGGAGAATGTCA+TGG 0.616797 6_2:-17785196 None:intergenic
GGATACAATAGATCGATTGG+TGG 0.622127 6_2:-17787092 None:intergenic
GAATAGGAAGCTTAGGAACG+TGG 0.629915 6_2:-17785208 None:intergenic
GTTCTGGAAGATTCGACGTG+AGG 0.646091 6_2:-17787070 None:intergenic
TGTGTCTCACTTGCAAACGC+AGG 0.665442 6_2:+17785276 Msa0911440:CDS
ATGGTGGTGATGAATAGTGA+TGG 0.705394 6_2:-17785240 None:intergenic
ACATGTTATGACAGACATGG+TGG 0.765146 6_2:-17785256 None:intergenic
GACACATGTTATGACAGACA+TGG 0.820382 6_2:-17785259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_2:17785624-17785643 Msa0911440:intron 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_2:17786628-17786647 None:intergenic 15.0%
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_2:17785624-17785643 Msa0911440:intron 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_2:17786628-17786647 None:intergenic 15.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_2:17785322-17785341 Msa0911440:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_2:17785623-17785642 Msa0911440:intron 20.0%
!!! TTATGTAAGCTTTAAAGTTT+AGG + chr6_2:17785856-17785875 Msa0911440:intron 20.0%
!! TAGTTATGCATTCTATTTAA+GGG - chr6_2:17785900-17785919 None:intergenic 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_2:17785901-17785920 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_2:17786003-17786022 Msa0911440:intron 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_2:17786074-17786093 Msa0911440:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_2:17786075-17786094 Msa0911440:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_2:17786452-17786471 Msa0911440:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_2:17786526-17786545 Msa0911440:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_2:17786659-17786678 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_2:17787020-17787039 None:intergenic 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_2:17787425-17787444 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_2:17787474-17787493 Msa0911440:three_prime_UTR 20.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_2:17785322-17785341 Msa0911440:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_2:17785623-17785642 Msa0911440:intron 20.0%
!!! TTATGTAAGCTTTAAAGTTT+AGG + chr6_2:17785856-17785875 Msa0911440:intron 20.0%
!! TAGTTATGCATTCTATTTAA+GGG - chr6_2:17785900-17785919 None:intergenic 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_2:17785901-17785920 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_2:17786003-17786022 Msa0911440:intron 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_2:17786074-17786093 Msa0911440:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_2:17786075-17786094 Msa0911440:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_2:17786452-17786471 Msa0911440:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_2:17786526-17786545 Msa0911440:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_2:17786659-17786678 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_2:17787020-17787039 None:intergenic 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_2:17787425-17787444 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_2:17787474-17787493 Msa0911440:three_prime_UTR 20.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_2:17785521-17785540 Msa0911440:CDS 25.0%
! TTAAAGCTTACATAAGTATG+TGG - chr6_2:17785851-17785870 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_2:17786204-17786223 Msa0911440:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_2:17786236-17786255 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_2:17786234-17786253 Msa0911440:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_2:17786386-17786405 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_2:17787021-17787040 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_2:17787160-17787179 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_2:17787164-17787183 Msa0911440:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_2:17787197-17787216 Msa0911440:CDS 25.0%
! ATGATCTCAAAAAGATAATG+TGG - chr6_2:17787248-17787267 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+CGG + chr6_2:17787248-17787267 Msa0911440:CDS 25.0%
!!! ATTATCTTTTTGAGATCATC+GGG + chr6_2:17787249-17787268 Msa0911440:CDS 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_2:17785521-17785540 Msa0911440:CDS 25.0%
! TTAAAGCTTACATAAGTATG+TGG - chr6_2:17785851-17785870 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_2:17786204-17786223 Msa0911440:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_2:17786236-17786255 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_2:17786234-17786253 Msa0911440:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_2:17786386-17786405 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_2:17787021-17787040 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_2:17787160-17787179 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_2:17787164-17787183 Msa0911440:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_2:17787197-17787216 Msa0911440:CDS 25.0%
! ATGATCTCAAAAAGATAATG+TGG - chr6_2:17787248-17787267 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+CGG + chr6_2:17787248-17787267 Msa0911440:CDS 25.0%
!!! ATTATCTTTTTGAGATCATC+GGG + chr6_2:17787249-17787268 Msa0911440:CDS 25.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_2:17785181-17785200 None:intergenic 30.0%
GTTATTAACGTTCCAGAATT+TGG - chr6_2:17785337-17785356 None:intergenic 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_2:17785474-17785493 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_2:17785473-17785492 Msa0911440:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_2:17785483-17785502 Msa0911440:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_2:17785538-17785557 Msa0911440:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_2:17785557-17785576 None:intergenic 30.0%
!!! CTGGTTTGGTTTTAAATTTG+TGG + chr6_2:17785765-17785784 Msa0911440:intron 30.0%
CGATGTCCACTTATTAAAAT+GGG - chr6_2:17785792-17785811 None:intergenic 30.0%
!! TAAGCTTTAAAGTTTAGGAG+AGG + chr6_2:17785861-17785880 Msa0911440:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_2:17785915-17785934 Msa0911440:intron 30.0%
AAATTCTTACATGGTATCAG+AGG - chr6_2:17785971-17785990 None:intergenic 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_2:17785971-17785990 Msa0911440:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_2:17785976-17785995 Msa0911440:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_2:17785977-17785996 Msa0911440:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_2:17786057-17786076 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_2:17786246-17786265 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_2:17786300-17786319 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_2:17786351-17786370 Msa0911440:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG + chr6_2:17786720-17786739 Msa0911440:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_2:17786872-17786891 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_2:17786969-17786988 Msa0911440:CDS 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_2:17787170-17787189 Msa0911440:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG - chr6_2:17787288-17787307 None:intergenic 30.0%
! TGATTTTCCTAAGAATGTCA+AGG + chr6_2:17787391-17787410 Msa0911440:CDS 30.0%
! ATAATAGCCTTGACATTCTT+AGG - chr6_2:17787401-17787420 None:intergenic 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_2:17787429-17787448 Msa0911440:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_2:17787538-17787557 Msa0911440:three_prime_UTR 30.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_2:17785181-17785200 None:intergenic 30.0%
GTTATTAACGTTCCAGAATT+TGG - chr6_2:17785337-17785356 None:intergenic 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_2:17785474-17785493 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_2:17785473-17785492 Msa0911440:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_2:17785483-17785502 Msa0911440:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_2:17785538-17785557 Msa0911440:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_2:17785557-17785576 None:intergenic 30.0%
!!! CTGGTTTGGTTTTAAATTTG+TGG + chr6_2:17785765-17785784 Msa0911440:intron 30.0%
CGATGTCCACTTATTAAAAT+GGG - chr6_2:17785792-17785811 None:intergenic 30.0%
!! TAAGCTTTAAAGTTTAGGAG+AGG + chr6_2:17785861-17785880 Msa0911440:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_2:17785915-17785934 Msa0911440:intron 30.0%
AAATTCTTACATGGTATCAG+AGG - chr6_2:17785971-17785990 None:intergenic 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_2:17785971-17785990 Msa0911440:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_2:17785976-17785995 Msa0911440:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_2:17785977-17785996 Msa0911440:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_2:17786057-17786076 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_2:17786246-17786265 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_2:17786300-17786319 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_2:17786351-17786370 Msa0911440:intron 30.0%
TTTGTTCCTAAGTATTTCGT+GGG + chr6_2:17786720-17786739 Msa0911440:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_2:17786872-17786891 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_2:17786969-17786988 Msa0911440:CDS 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_2:17787170-17787189 Msa0911440:CDS 30.0%
ATACAATGTCTGAGAAATGA+AGG - chr6_2:17787288-17787307 None:intergenic 30.0%
! TGATTTTCCTAAGAATGTCA+AGG + chr6_2:17787391-17787410 Msa0911440:CDS 30.0%
! ATAATAGCCTTGACATTCTT+AGG - chr6_2:17787401-17787420 None:intergenic 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_2:17787429-17787448 Msa0911440:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_2:17787538-17787557 Msa0911440:three_prime_UTR 30.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_2:17785163-17785182 None:intergenic 35.0%
ATGACATTGTCGAGTAAAAG+TGG + chr6_2:17785390-17785409 Msa0911440:CDS 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_2:17785459-17785478 Msa0911440:CDS 35.0%
AACCTTTGATGTAGAACTTG+TGG + chr6_2:17785699-17785718 Msa0911440:intron 35.0%
! AAGAGTGTATAGCGAAATTC+TGG + chr6_2:17785746-17785765 Msa0911440:intron 35.0%
! TGTATAGCGAAATTCTGGTT+TGG + chr6_2:17785751-17785770 Msa0911440:intron 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_2:17785783-17785802 Msa0911440:intron 35.0%
GCGATGTCCACTTATTAAAA+TGG - chr6_2:17785793-17785812 None:intergenic 35.0%
TTATACACAACCGAAATCGT+GGG - chr6_2:17785824-17785843 None:intergenic 35.0%
ATTATACACAACCGAAATCG+TGG - chr6_2:17785825-17785844 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_2:17785980-17785999 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_2:17786015-17786034 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_2:17786012-17786031 Msa0911440:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_2:17786017-17786036 Msa0911440:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_2:17786047-17786066 None:intergenic 35.0%
TAACACATAGTCTAGTACCA+AGG + chr6_2:17786103-17786122 Msa0911440:intron 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_2:17786158-17786177 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_2:17786248-17786267 Msa0911440:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG + chr6_2:17786295-17786314 Msa0911440:intron 35.0%
TAATCCACCGCATTAATTGT+AGG - chr6_2:17786361-17786380 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_2:17786408-17786427 Msa0911440:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_2:17786416-17786435 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_2:17786421-17786440 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_2:17786496-17786515 Msa0911440:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG + chr6_2:17786719-17786738 Msa0911440:intron 35.0%
CATAATCCCACGAAATACTT+AGG - chr6_2:17786729-17786748 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_2:17786944-17786963 Msa0911440:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_2:17786980-17786999 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_2:17786977-17786996 Msa0911440:CDS 35.0%
TACAAGAAACAATGCGATTC+CGG - chr6_2:17787117-17787136 None:intergenic 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_2:17787147-17787166 None:intergenic 35.0%
! TTCGCCTTTTCCTCTTAATT+TGG - chr6_2:17787177-17787196 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_2:17787200-17787219 Msa0911440:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_2:17787215-17787234 None:intergenic 35.0%
!! TTTGAGATCATCGGGTTTTA+TGG + chr6_2:17787257-17787276 Msa0911440:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_2:17787324-17787343 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_2:17787325-17787344 Msa0911440:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_2:17787326-17787345 Msa0911440:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_2:17787330-17787349 Msa0911440:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_2:17787484-17787503 Msa0911440:three_prime_UTR 35.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_2:17785163-17785182 None:intergenic 35.0%
ATGACATTGTCGAGTAAAAG+TGG + chr6_2:17785390-17785409 Msa0911440:CDS 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_2:17785459-17785478 Msa0911440:CDS 35.0%
AACCTTTGATGTAGAACTTG+TGG + chr6_2:17785699-17785718 Msa0911440:intron 35.0%
! AAGAGTGTATAGCGAAATTC+TGG + chr6_2:17785746-17785765 Msa0911440:intron 35.0%
! TGTATAGCGAAATTCTGGTT+TGG + chr6_2:17785751-17785770 Msa0911440:intron 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_2:17785783-17785802 Msa0911440:intron 35.0%
GCGATGTCCACTTATTAAAA+TGG - chr6_2:17785793-17785812 None:intergenic 35.0%
TTATACACAACCGAAATCGT+GGG - chr6_2:17785824-17785843 None:intergenic 35.0%
ATTATACACAACCGAAATCG+TGG - chr6_2:17785825-17785844 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_2:17785980-17785999 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_2:17786015-17786034 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_2:17786012-17786031 Msa0911440:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_2:17786017-17786036 Msa0911440:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_2:17786047-17786066 None:intergenic 35.0%
TAACACATAGTCTAGTACCA+AGG + chr6_2:17786103-17786122 Msa0911440:intron 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_2:17786158-17786177 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_2:17786248-17786267 Msa0911440:intron 35.0%
AGCCATATCTCTTCTAATGT+AGG + chr6_2:17786295-17786314 Msa0911440:intron 35.0%
TAATCCACCGCATTAATTGT+AGG - chr6_2:17786361-17786380 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_2:17786408-17786427 Msa0911440:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_2:17786416-17786435 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_2:17786421-17786440 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_2:17786496-17786515 Msa0911440:intron 35.0%
GTTTGTTCCTAAGTATTTCG+TGG + chr6_2:17786719-17786738 Msa0911440:intron 35.0%
CATAATCCCACGAAATACTT+AGG - chr6_2:17786729-17786748 None:intergenic 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_2:17786944-17786963 Msa0911440:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_2:17786980-17786999 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_2:17786977-17786996 Msa0911440:CDS 35.0%
TACAAGAAACAATGCGATTC+CGG - chr6_2:17787117-17787136 None:intergenic 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_2:17787147-17787166 None:intergenic 35.0%
! TTCGCCTTTTCCTCTTAATT+TGG - chr6_2:17787177-17787196 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_2:17787200-17787219 Msa0911440:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_2:17787215-17787234 None:intergenic 35.0%
!! TTTGAGATCATCGGGTTTTA+TGG + chr6_2:17787257-17787276 Msa0911440:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_2:17787324-17787343 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_2:17787325-17787344 Msa0911440:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_2:17787326-17787345 Msa0911440:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_2:17787330-17787349 Msa0911440:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_2:17787484-17787503 Msa0911440:three_prime_UTR 35.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_2:17785239-17785258 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_2:17785243-17785262 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_2:17785259-17785278 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_2:17785262-17785281 None:intergenic 40.0%
GCAGGTATCAATGAAGTTAG+AGG + chr6_2:17785294-17785313 Msa0911440:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_2:17785644-17785663 Msa0911440:intron 40.0%
GTCCACAAGTTCTACATCAA+AGG - chr6_2:17785704-17785723 None:intergenic 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_2:17786157-17786176 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_2:17786160-17786179 Msa0911440:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_2:17786168-17786187 Msa0911440:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_2:17786342-17786361 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_2:17786354-17786373 Msa0911440:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG + chr6_2:17786371-17786390 Msa0911440:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG - chr6_2:17787089-17787108 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG - chr6_2:17787095-17787114 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG + chr6_2:17787095-17787114 Msa0911440:CDS 40.0%
ACAAGAAACAATGCGATTCC+GGG - chr6_2:17787116-17787135 None:intergenic 40.0%
! GGAATCGCATTGTTTCTTGT+AGG + chr6_2:17787116-17787135 Msa0911440:CDS 40.0%
TATTCGTTCTCTTTCGCCAT+AGG + chr6_2:17787305-17787324 Msa0911440:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_2:17787343-17787362 None:intergenic 40.0%
GGAGTTATGCAACTAGAGAA+TGG + chr6_2:17787351-17787370 Msa0911440:CDS 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_2:17787499-17787518 Msa0911440:three_prime_UTR 40.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_2:17785239-17785258 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_2:17785243-17785262 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_2:17785259-17785278 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_2:17785262-17785281 None:intergenic 40.0%
GCAGGTATCAATGAAGTTAG+AGG + chr6_2:17785294-17785313 Msa0911440:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_2:17785644-17785663 Msa0911440:intron 40.0%
GTCCACAAGTTCTACATCAA+AGG - chr6_2:17785704-17785723 None:intergenic 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_2:17786157-17786176 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_2:17786160-17786179 Msa0911440:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_2:17786168-17786187 Msa0911440:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_2:17786342-17786361 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_2:17786354-17786373 Msa0911440:intron 40.0%
!! CGGTGGATTAGACCATAATT+TGG + chr6_2:17786371-17786390 Msa0911440:intron 40.0%
! AATAGATCGATTGGTGGTTC+TGG - chr6_2:17787089-17787108 None:intergenic 40.0%
GGATACAATAGATCGATTGG+TGG - chr6_2:17787095-17787114 None:intergenic 40.0%
CCAATCGATCTATTGTATCC+CGG + chr6_2:17787095-17787114 Msa0911440:CDS 40.0%
ACAAGAAACAATGCGATTCC+GGG - chr6_2:17787116-17787135 None:intergenic 40.0%
! GGAATCGCATTGTTTCTTGT+AGG + chr6_2:17787116-17787135 Msa0911440:CDS 40.0%
TATTCGTTCTCTTTCGCCAT+AGG + chr6_2:17787305-17787324 Msa0911440:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_2:17787343-17787362 None:intergenic 40.0%
GGAGTTATGCAACTAGAGAA+TGG + chr6_2:17787351-17787370 Msa0911440:CDS 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_2:17787499-17787518 Msa0911440:three_prime_UTR 40.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_2:17785199-17785218 None:intergenic 45.0%
GAATAGGAAGCTTAGGAACG+TGG - chr6_2:17785211-17785230 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_2:17785237-17785256 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_2:17785238-17785257 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_2:17785240-17785259 None:intergenic 45.0%
!! GGTTCTTCAAGGTGCTGTTA+CGG + chr6_2:17785494-17785513 Msa0911440:CDS 45.0%
TAATAAGTGGACATCGCTCG+TGG + chr6_2:17785796-17785815 Msa0911440:intron 45.0%
TGGTATCAGAGGCGAATTGT+TGG - chr6_2:17785960-17785979 None:intergenic 45.0%
CATAGTCTAGTACCAAGGAC+TGG + chr6_2:17786108-17786127 Msa0911440:intron 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_2:17786186-17786205 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG - chr6_2:17787098-17787117 None:intergenic 45.0%
! TTGTTTCTTGTAGGCGTCAC+CGG + chr6_2:17787125-17787144 Msa0911440:CDS 45.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_2:17785199-17785218 None:intergenic 45.0%
GAATAGGAAGCTTAGGAACG+TGG - chr6_2:17785211-17785230 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_2:17785237-17785256 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_2:17785238-17785257 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_2:17785240-17785259 None:intergenic 45.0%
!! GGTTCTTCAAGGTGCTGTTA+CGG + chr6_2:17785494-17785513 Msa0911440:CDS 45.0%
TAATAAGTGGACATCGCTCG+TGG + chr6_2:17785796-17785815 Msa0911440:intron 45.0%
TGGTATCAGAGGCGAATTGT+TGG - chr6_2:17785960-17785979 None:intergenic 45.0%
CATAGTCTAGTACCAAGGAC+TGG + chr6_2:17786108-17786127 Msa0911440:intron 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_2:17786186-17786205 None:intergenic 45.0%
CCGGGATACAATAGATCGAT+TGG - chr6_2:17787098-17787117 None:intergenic 45.0%
! TTGTTTCTTGTAGGCGTCAC+CGG + chr6_2:17787125-17787144 Msa0911440:CDS 45.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_2:17785233-17785252 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_2:17785234-17785253 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_2:17785276-17785295 Msa0911440:CDS 50.0%
GCAGCACAAGCAACAAAAGC+AGG - chr6_2:17785435-17785454 None:intergenic 50.0%
!! TGCTTGTGCTGCGTCGTTTT+TGG + chr6_2:17785443-17785462 Msa0911440:CDS 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_2:17786123-17786142 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_2:17786142-17786161 Msa0911440:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_2:17786148-17786167 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_2:17786149-17786168 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_2:17786180-17786199 Msa0911440:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG - chr6_2:17787073-17787092 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_2:17785233-17785252 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_2:17785234-17785253 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_2:17785276-17785295 Msa0911440:CDS 50.0%
GCAGCACAAGCAACAAAAGC+AGG - chr6_2:17785435-17785454 None:intergenic 50.0%
!! TGCTTGTGCTGCGTCGTTTT+TGG + chr6_2:17785443-17785462 Msa0911440:CDS 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_2:17786123-17786142 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_2:17786142-17786161 Msa0911440:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_2:17786148-17786167 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_2:17786149-17786168 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_2:17786180-17786199 Msa0911440:intron 50.0%
!! GTTCTGGAAGATTCGACGTG+AGG - chr6_2:17787073-17787092 None:intergenic 50.0%
GGGGTGGGAATAGGAAGCTT+AGG - chr6_2:17785218-17785237 None:intergenic 55.0%
GCTCGTGGATCCCACGATTT+CGG + chr6_2:17785811-17785830 Msa0911440:intron 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_2:17786175-17786194 Msa0911440:intron 55.0%
GGGGTGGGAATAGGAAGCTT+AGG - chr6_2:17785218-17785237 None:intergenic 55.0%
GCTCGTGGATCCCACGATTT+CGG + chr6_2:17785811-17785830 Msa0911440:intron 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_2:17786175-17786194 Msa0911440:intron 55.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_2:17785227-17785246 None:intergenic 60.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_2:17785227-17785246 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 17785142 17787572 17785142 ID=Msa0911440;Name=Msa0911440
chr6_2 mRNA 17785142 17787572 17785142 ID=Msa0911440-mRNA-1;Parent=Msa0911440;Name=Msa0911440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|2|136|271
chr6_2 exon 17785142 17785542 17785142 ID=Msa0911440-mRNA-1:exon:3735;Parent=Msa0911440-mRNA-1
chr6_2 exon 17786966 17787572 17786966 ID=Msa0911440-mRNA-1:exon:3736;Parent=Msa0911440-mRNA-1
chr6_2 five_prime_UTR 17785142 17785197 17785142 ID=Msa0911440-mRNA-1:five_prime_utr;Parent=Msa0911440-mRNA-1
chr6_2 CDS 17785198 17785542 17785198 ID=Msa0911440-mRNA-1:cds;Parent=Msa0911440-mRNA-1
chr6_2 CDS 17786966 17787436 17786966 ID=Msa0911440-mRNA-1:cds;Parent=Msa0911440-mRNA-1
chr6_2 three_prime_UTR 17787437 17787572 17787437 ID=Msa0911440-mRNA-1:three_prime_utr;Parent=Msa0911440-mRNA-1
Gene Sequence

>Msa0911440

ATGACATTCTCCACGTTCCTAAGCTTCCTATTCCCACCCCCACCATCACTATTCATCACCACCATGTCTGTCATAACATGTGTCTCACTTGCAAACGCAGGTATCAATGAAGTTAGAGGAAAACATTTAAACTATTCCAAATTCTGGAACGTTAATAACAACAATGATGAAAAGAAGAAGAAGAAGAAGATGATGACATTGTCGAGTAAAAGTGGTATGTTGTTGTTGTATACTCCTGCTTTTGTTGCTTGTGCTGCGTCGTTTTTGGTGTTTCCTGATGATGGTTTTAGATCTTTGGTTCTTCAAGGTGCTGTTACGGTTCATTTCTTTAAGAGAGTTTTTGAGGTTCTATTTGTCCACAAATATAGTGGTTCTATGGCTCTTGAAACTGCAATTCCCATAACTCTAAGTTATTTTCTCTCATCTGCAACTATGATCTATACACAACACCTCACGTCGAATCTTCCAGAACCACCAATCGATCTATTGTATCCCGGAATCGCATTGTTTCTTGTAGGCGTCACCGGCAACTTCTACCATCATTATCTTCTATCCAAATTAAGAGGAAAAGGCGAAAAAGAATACAAGATTCCTAAAGGTGGCTTGTTTGATTTTGTGATATGTCCACATTATCTTTTTGAGATCATCGGGTTTTATGGTTTTTCCTTCATTTCTCAGACATTGTATTCGTTCTCTTTCGCCATAGGCACTACTTTTTACCTTTTGGGTAGGAGTTATGCAACTAGAGAATGGTATCTCTCTAAATTTGATGATTTTCCTAAGAATGTCAAGGCTATTATTCCATTTTTGTTCTAA

Protein sequence

>Msa0911440

MTFSTFLSFLFPPPPSLFITTMSVITCVSLANAGINEVRGKHLNYSKFWNVNNNNDEKKKKKKMMTLSSKSGMLLLYTPAFVACAASFLVFPDDGFRSLVLQGAVTVHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATMIYTQHLTSNLPEPPIDLLYPGIALFLVGVTGNFYHHYLLSKLRGKGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSFISQTLYSFSFAIGTTFYLLGRSYATREWYLSKFDDFPKNVKAIIPFLF*