AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079550 MtrunA17_Chr1g0190931 76.364 220 18 3 6 199 1 212 3.16e-116 330
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079550 AT3G04890.4 46.012 163 62 3 70 206 37 199 5.12e-38 131
Msa0079550 AT3G04890.2 46.012 163 62 3 70 206 33 195 5.12e-38 131
Msa0079550 AT3G04890.1 47.436 156 56 3 70 199 33 188 6.12e-38 131
Msa0079550 AT3G04890.3 47.436 156 56 3 70 199 37 192 9.21e-38 130

Find 59 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCAATACTTGAAAC+TGG 0.314009 1_2:+57471045 None:intergenic
CTAGTTATGCATATGCTTAT+CGG 0.325160 1_2:+57469784 None:intergenic
GCATAGATACCTTGTTTGTT+GGG 0.356498 1_2:+57471428 None:intergenic
GGCATAGATACCTTGTTTGT+TGG 0.370365 1_2:+57471427 None:intergenic
TGCGTGCATCTTGGAAATTA+AGG 0.376993 1_2:-57470296 Msa0079550:intron
TGCTTAGAAGTTAGAAGAAT+AGG 0.394568 1_2:+57471820 None:intergenic
CTATATAAATTAAGAATCAT+AGG 0.403118 1_2:+57469884 None:intergenic
TGATGTTCTAATCATCATAA+AGG 0.421681 1_2:-57471028 Msa0079550:CDS
TGGAAGTGTAAGGCTATTGT+AGG 0.430972 1_2:+57471720 None:intergenic
GTTGAATGTCATGGCGGGTG+AGG 0.439811 1_2:-57469939 Msa0079550:three_prime_UTR
ATAGTTGTTAATGACGCAAT+TGG 0.441004 1_2:-57469843 Msa0079550:three_prime_UTR
CATAAAGAAGTCGAATGAAA+TGG 0.444668 1_2:-57471772 Msa0079550:intron
ATAATGCAGGATGTTGAATC+TGG 0.446617 1_2:-57470330 Msa0079550:intron
AGGCCTCTGATTGCTATTGA+TGG 0.449120 1_2:-57470170 Msa0079550:CDS
CGATAAGCATATGCATAACT+AGG 0.472187 1_2:-57469783 Msa0079550:three_prime_UTR
CGCCATGACATTCAACCACC+TGG 0.479324 1_2:+57469946 None:intergenic
GATCTTTAGTAGTCTAATTG+AGG 0.482759 1_2:+57470445 None:intergenic
TTGAATGTCATGGCGGGTGA+GGG 0.513980 1_2:-57469938 Msa0079550:three_prime_UTR
ATTGAGGCACAGTCGAAGAA+TGG 0.515153 1_2:+57470461 None:intergenic
GGAAGTGTAAGGCTATTGTA+GGG 0.518951 1_2:+57471721 None:intergenic
AGATACCTTGTTTGTTGGGG+AGG 0.519985 1_2:+57471432 None:intergenic
CTGAATACTGATAGATGAGA+AGG 0.520191 1_2:+57469705 None:intergenic
GGACGCCACCCTTGCTGTTG+CGG 0.524042 1_2:-57471596 Msa0079550:CDS
GTTTAAGCAATGTTTACTAC+AGG 0.527462 1_2:-57469738 Msa0079550:three_prime_UTR
TAGACTACTAAAGATCGAAA+AGG 0.538132 1_2:-57470438 Msa0079550:intron
CATAGATACCTTGTTTGTTG+GGG 0.538359 1_2:+57471429 None:intergenic
AGACATTTATTACCTGGGAG+TGG 0.539869 1_2:+57471700 None:intergenic
TCATTCGGCATATTGAGAGT+TGG 0.540063 1_2:-57470017 Msa0079550:three_prime_UTR
CATCATCAATACTTGAAACT+GGG 0.541779 1_2:+57471046 None:intergenic
CTGAATCTCTTGTTAAGACT+AGG 0.549622 1_2:-57471617 Msa0079550:CDS
GGGGAGGAGAGAAAAGCCTC+AGG 0.553407 1_2:+57471448 None:intergenic
GCGGAGTGACGGAGCTCCTG+AGG 0.554237 1_2:-57471464 Msa0079550:CDS
GATTGCAGTGAGCGGAGTGA+CGG 0.565614 1_2:-57471475 Msa0079550:CDS
AGCCTTACACTTCCACTCCC+AGG 0.566168 1_2:-57471712 Msa0079550:intron
AGAAAGAAATGAAACCCCTC+AGG 0.569312 1_2:-57471505 Msa0079550:CDS
AACCAGGTGGTTGAATGTCA+TGG 0.570801 1_2:-57469948 Msa0079550:three_prime_UTR
TGTTTCCGCAACAGCAAGGG+TGG 0.575559 1_2:+57471591 None:intergenic
CTGCAATCTTCAGAACCTGA+GGG 0.576531 1_2:+57471490 None:intergenic
TGTTGTTTCCGCAACAGCAA+GGG 0.587584 1_2:+57471588 None:intergenic
TCTCTCCTCCCCAACAAACA+AGG 0.591145 1_2:-57471437 Msa0079550:intron
GTGTTGTTTCCGCAACAGCA+AGG 0.594278 1_2:+57471587 None:intergenic
GTTGCAACCACTAGTTAACA+TGG 0.594371 1_2:+57470055 None:intergenic
GACTTGTGCAATTTATAACA+TGG 0.596814 1_2:-57471532 Msa0079550:CDS
TCGAAATCCATGTTAACTAG+TGG 0.601437 1_2:-57470062 Msa0079550:three_prime_UTR
TACCTGGGAGTGGAAGTGTA+AGG 0.601591 1_2:+57471710 None:intergenic
CATTAACAACTATATACAGT+AGG 0.611061 1_2:+57469853 None:intergenic
GGACCAACTTAAAACTTCCG+TGG 0.611426 1_2:-57470193 Msa0079550:CDS
ACTGATAGATGAGAAGGGAA+AGG 0.611669 1_2:+57469711 None:intergenic
TGAATACTGATAGATGAGAA+GGG 0.612663 1_2:+57469706 None:intergenic
ATAGCAATCAGAGGCCTCCA+CGG 0.621582 1_2:+57470176 None:intergenic
AGGTGGTTGAATGTCATGGC+GGG 0.631232 1_2:-57469944 Msa0079550:three_prime_UTR
ACTGCAATCTTCAGAACCTG+AGG 0.643213 1_2:+57471489 None:intergenic
ATCATCAATACTTGAAACTG+GGG 0.643651 1_2:+57471047 None:intergenic
GTTCTGAAGATTGCAGTGAG+CGG 0.663984 1_2:-57471483 Msa0079550:CDS
TGCAATCTTCAGAACCTGAG+GGG 0.670652 1_2:+57471491 None:intergenic
GAAGTGTAAGGCTATTGTAG+GGG 0.673629 1_2:+57471722 None:intergenic
CTTCCATCAATAGCAATCAG+AGG 0.678084 1_2:+57470167 None:intergenic
CCAACTTAAAACTTCCGTGG+AGG 0.722693 1_2:-57470190 Msa0079550:CDS
CAGGTGGTTGAATGTCATGG+CGG 0.757865 1_2:-57469945 Msa0079550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATTAATAATGC+AGG - chr1_2:57471188-57471207 Msa0079550:intron 10.0%
!! ATTATATAAATTAATAATGC+AGG - chr1_2:57471188-57471207 Msa0079550:intron 10.0%
!! TGAAAAAATATTTGATAAGA+GGG + chr1_2:57470590-57470609 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG + chr1_2:57470591-57470610 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG + chr1_2:57471650-57471669 None:intergenic 15.0%
!! TGAAAAAATATTTGATAAGA+GGG + chr1_2:57470590-57470609 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG + chr1_2:57470591-57470610 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG + chr1_2:57471650-57471669 None:intergenic 15.0%
!! TTCTTTATGATTCAATTCAT+TGG + chr1_2:57469748-57469767 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG + chr1_2:57469839-57469858 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG + chr1_2:57470430-57470449 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG + chr1_2:57470773-57470792 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG + chr1_2:57470916-57470935 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG + chr1_2:57470917-57470936 None:intergenic 20.0%
!! TTCTTTATGATTCAATTCAT+TGG + chr1_2:57469748-57469767 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG + chr1_2:57469839-57469858 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG + chr1_2:57470430-57470449 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG + chr1_2:57470773-57470792 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG + chr1_2:57470916-57470935 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG + chr1_2:57470917-57470936 None:intergenic 20.0%
! GAATAAAGACATTTATTACC+TGG + chr1_2:57469840-57469859 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG + chr1_2:57470254-57470273 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG - chr1_2:57470503-57470522 Msa0079550:intron 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG - chr1_2:57470701-57470720 Msa0079550:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG - chr1_2:57470702-57470721 Msa0079550:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG - chr1_2:57470767-57470786 Msa0079550:intron 25.0%
! AGACTAGCATAAGATATTAT+AGG + chr1_2:57470811-57470830 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG - chr1_2:57470935-57470954 Msa0079550:intron 25.0%
!!! ATTTTGTTTGACAGATCATT+CGG - chr1_2:57471499-57471518 Msa0079550:CDS 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG - chr1_2:57471567-57471586 Msa0079550:CDS 25.0%
! CATTAACAACTATATACAGT+AGG + chr1_2:57471681-57471700 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG + chr1_2:57471716-57471735 None:intergenic 25.0%
! GAATAAAGACATTTATTACC+TGG + chr1_2:57469840-57469859 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG + chr1_2:57470254-57470273 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG - chr1_2:57470503-57470522 Msa0079550:intron 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG - chr1_2:57470701-57470720 Msa0079550:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG - chr1_2:57470702-57470721 Msa0079550:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG - chr1_2:57470767-57470786 Msa0079550:intron 25.0%
! AGACTAGCATAAGATATTAT+AGG + chr1_2:57470811-57470830 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG - chr1_2:57470935-57470954 Msa0079550:intron 25.0%
!!! ATTTTGTTTGACAGATCATT+CGG - chr1_2:57471499-57471518 Msa0079550:CDS 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG - chr1_2:57471567-57471586 Msa0079550:CDS 25.0%
! CATTAACAACTATATACAGT+AGG + chr1_2:57471681-57471700 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG + chr1_2:57471716-57471735 None:intergenic 25.0%
CATAAAGAAGTCGAATGAAA+TGG - chr1_2:57469759-57469778 Msa0079550:three_prime_UTR 30.0%
GACTTGTGCAATTTATAACA+TGG - chr1_2:57469999-57470018 Msa0079550:three_prime_UTR 30.0%
AAGTGTTTGTGCTACATAAA+TGG + chr1_2:57470128-57470147 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG + chr1_2:57470487-57470506 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG + chr1_2:57470488-57470507 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG + chr1_2:57470489-57470508 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG - chr1_2:57470661-57470680 Msa0079550:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG + chr1_2:57470677-57470696 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG - chr1_2:57471010-57471029 Msa0079550:CDS 30.0%
GATCTTTAGTAGTCTAATTG+AGG + chr1_2:57471089-57471108 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG - chr1_2:57471093-57471112 Msa0079550:intron 30.0%
ATTAACATGCTTAATGAGCA+AGG + chr1_2:57471267-57471286 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG - chr1_2:57471317-57471336 Msa0079550:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG + chr1_2:57471444-57471463 None:intergenic 30.0%
! AAGAATCATAGGCATTTTCA+TGG + chr1_2:57471639-57471658 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG - chr1_2:57471688-57471707 Msa0079550:intron 30.0%
CTAGTTATGCATATGCTTAT+CGG + chr1_2:57471750-57471769 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG - chr1_2:57471793-57471812 Msa0079550:intron 30.0%
CATAAAGAAGTCGAATGAAA+TGG - chr1_2:57469759-57469778 Msa0079550:three_prime_UTR 30.0%
GACTTGTGCAATTTATAACA+TGG - chr1_2:57469999-57470018 Msa0079550:three_prime_UTR 30.0%
AAGTGTTTGTGCTACATAAA+TGG + chr1_2:57470128-57470147 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG + chr1_2:57470487-57470506 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG + chr1_2:57470488-57470507 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG + chr1_2:57470489-57470508 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG - chr1_2:57470661-57470680 Msa0079550:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG + chr1_2:57470677-57470696 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG - chr1_2:57471010-57471029 Msa0079550:CDS 30.0%
GATCTTTAGTAGTCTAATTG+AGG + chr1_2:57471089-57471108 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG - chr1_2:57471093-57471112 Msa0079550:intron 30.0%
ATTAACATGCTTAATGAGCA+AGG + chr1_2:57471267-57471286 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG - chr1_2:57471317-57471336 Msa0079550:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG + chr1_2:57471444-57471463 None:intergenic 30.0%
! AAGAATCATAGGCATTTTCA+TGG + chr1_2:57471639-57471658 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG - chr1_2:57471688-57471707 Msa0079550:intron 30.0%
CTAGTTATGCATATGCTTAT+CGG + chr1_2:57471750-57471769 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG - chr1_2:57471793-57471812 Msa0079550:intron 30.0%
CTGAATCTCTTGTTAAGACT+AGG - chr1_2:57469914-57469933 Msa0079550:three_prime_UTR 35.0%
! CATAGATACCTTGTTTGTTG+GGG + chr1_2:57470105-57470124 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG + chr1_2:57470106-57470125 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG + chr1_2:57470221-57470240 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG + chr1_2:57470379-57470398 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG - chr1_2:57471014-57471033 Msa0079550:CDS 35.0%
GATGTATGATCATACAGGTA+GGG - chr1_2:57471015-57471034 Msa0079550:CDS 35.0%
ATAATGCAGGATGTTGAATC+TGG - chr1_2:57471201-57471220 Msa0079550:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG - chr1_2:57471469-57471488 Msa0079550:CDS 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG - chr1_2:57471570-57471589 Msa0079550:CDS 35.0%
CGATAAGCATATGCATAACT+AGG - chr1_2:57471748-57471767 Msa0079550:CDS 35.0%
CTGAATCTCTTGTTAAGACT+AGG - chr1_2:57469914-57469933 Msa0079550:three_prime_UTR 35.0%
! CATAGATACCTTGTTTGTTG+GGG + chr1_2:57470105-57470124 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG + chr1_2:57470106-57470125 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG + chr1_2:57470221-57470240 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG + chr1_2:57470379-57470398 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG - chr1_2:57471014-57471033 Msa0079550:CDS 35.0%
GATGTATGATCATACAGGTA+GGG - chr1_2:57471015-57471034 Msa0079550:CDS 35.0%
ATAATGCAGGATGTTGAATC+TGG - chr1_2:57471201-57471220 Msa0079550:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG - chr1_2:57471469-57471488 Msa0079550:CDS 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG - chr1_2:57471570-57471589 Msa0079550:CDS 35.0%
CGATAAGCATATGCATAACT+AGG - chr1_2:57471748-57471767 Msa0079550:CDS 35.0%
! GCAAAAACATGCTGCTTCAA+CGG - chr1_2:57469781-57469800 Msa0079550:three_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG + chr1_2:57469812-57469831 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG + chr1_2:57469813-57469832 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG + chr1_2:57469814-57469833 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG + chr1_2:57469834-57469853 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG + chr1_2:57469988-57470007 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG - chr1_2:57470026-57470045 Msa0079550:three_prime_UTR 40.0%
! GGCATAGATACCTTGTTTGT+TGG + chr1_2:57470107-57470126 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG + chr1_2:57470188-57470207 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG + chr1_2:57470211-57470230 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG - chr1_2:57470308-57470327 Msa0079550:CDS 40.0%
TGTGTATGTGTAAGAGGTAG+TGG - chr1_2:57470314-57470333 Msa0079550:CDS 40.0%
! CAAATTTTCTGCGTGCATCT+TGG - chr1_2:57471226-57471245 Msa0079550:intron 40.0%
TGCGTGCATCTTGGAAATTA+AGG - chr1_2:57471235-57471254 Msa0079550:intron 40.0%
CTTCCATCAATAGCAATCAG+AGG + chr1_2:57471367-57471386 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG + chr1_2:57471479-57471498 None:intergenic 40.0%
TCATTCGGCATATTGAGAGT+TGG - chr1_2:57471514-57471533 Msa0079550:CDS 40.0%
! GCAAAAACATGCTGCTTCAA+CGG - chr1_2:57469781-57469800 Msa0079550:three_prime_UTR 40.0%
GAAGTGTAAGGCTATTGTAG+GGG + chr1_2:57469812-57469831 None:intergenic 40.0%
! GGAAGTGTAAGGCTATTGTA+GGG + chr1_2:57469813-57469832 None:intergenic 40.0%
! TGGAAGTGTAAGGCTATTGT+AGG + chr1_2:57469814-57469833 None:intergenic 40.0%
AGACATTTATTACCTGGGAG+TGG + chr1_2:57469834-57469853 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG + chr1_2:57469988-57470007 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG - chr1_2:57470026-57470045 Msa0079550:three_prime_UTR 40.0%
! GGCATAGATACCTTGTTTGT+TGG + chr1_2:57470107-57470126 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG + chr1_2:57470188-57470207 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG + chr1_2:57470211-57470230 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG - chr1_2:57470308-57470327 Msa0079550:CDS 40.0%
TGTGTATGTGTAAGAGGTAG+TGG - chr1_2:57470314-57470333 Msa0079550:CDS 40.0%
! CAAATTTTCTGCGTGCATCT+TGG - chr1_2:57471226-57471245 Msa0079550:intron 40.0%
TGCGTGCATCTTGGAAATTA+AGG - chr1_2:57471235-57471254 Msa0079550:intron 40.0%
CTTCCATCAATAGCAATCAG+AGG + chr1_2:57471367-57471386 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG + chr1_2:57471479-57471498 None:intergenic 40.0%
TCATTCGGCATATTGAGAGT+TGG - chr1_2:57471514-57471533 Msa0079550:CDS 40.0%
!! TGTTGTTTCCGCAACAGCAA+GGG + chr1_2:57469946-57469965 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG + chr1_2:57470043-57470062 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG + chr1_2:57470044-57470063 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG + chr1_2:57470045-57470064 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG - chr1_2:57470048-57470067 Msa0079550:three_prime_UTR 45.0%
! AGATACCTTGTTTGTTGGGG+AGG + chr1_2:57470102-57470121 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG - chr1_2:57470145-57470164 Msa0079550:CDS 45.0%
ACACTTGACACATCCGACAT+TGG - chr1_2:57470195-57470214 Msa0079550:CDS 45.0%
ATTACTACCAGCGTCATGTC+TGG - chr1_2:57470282-57470301 Msa0079550:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG - chr1_2:57470327-57470346 Msa0079550:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG + chr1_2:57470355-57470374 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG + chr1_2:57470362-57470381 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG - chr1_2:57470534-57470553 Msa0079550:intron 45.0%
ATTGAGGCACAGTCGAAGAA+TGG + chr1_2:57471073-57471092 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG - chr1_2:57471338-57471357 Msa0079550:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG + chr1_2:57471344-57471363 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG - chr1_2:57471341-57471360 Msa0079550:intron 45.0%
! AGGCCTCTGATTGCTATTGA+TGG - chr1_2:57471361-57471380 Msa0079550:intron 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG + chr1_2:57471436-57471455 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG + chr1_2:57471439-57471458 None:intergenic 45.0%
AACCAGGTGGTTGAATGTCA+TGG - chr1_2:57471583-57471602 Msa0079550:CDS 45.0%
!! TGTTGTTTCCGCAACAGCAA+GGG + chr1_2:57469946-57469965 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG + chr1_2:57470043-57470062 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG + chr1_2:57470044-57470063 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG + chr1_2:57470045-57470064 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG - chr1_2:57470048-57470067 Msa0079550:three_prime_UTR 45.0%
! AGATACCTTGTTTGTTGGGG+AGG + chr1_2:57470102-57470121 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG - chr1_2:57470145-57470164 Msa0079550:CDS 45.0%
ACACTTGACACATCCGACAT+TGG - chr1_2:57470195-57470214 Msa0079550:CDS 45.0%
ATTACTACCAGCGTCATGTC+TGG - chr1_2:57470282-57470301 Msa0079550:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG - chr1_2:57470327-57470346 Msa0079550:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG + chr1_2:57470355-57470374 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG + chr1_2:57470362-57470381 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG - chr1_2:57470534-57470553 Msa0079550:intron 45.0%
ATTGAGGCACAGTCGAAGAA+TGG + chr1_2:57471073-57471092 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG - chr1_2:57471338-57471357 Msa0079550:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG + chr1_2:57471344-57471363 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG - chr1_2:57471341-57471360 Msa0079550:intron 45.0%
! AGGCCTCTGATTGCTATTGA+TGG - chr1_2:57471361-57471380 Msa0079550:intron 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG + chr1_2:57471436-57471455 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG + chr1_2:57471439-57471458 None:intergenic 45.0%
AACCAGGTGGTTGAATGTCA+TGG - chr1_2:57471583-57471602 Msa0079550:CDS 45.0%
! TACCTGGGAGTGGAAGTGTA+AGG + chr1_2:57469824-57469843 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG + chr1_2:57469947-57469966 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG - chr1_2:57470094-57470113 Msa0079550:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG - chr1_2:57470341-57470360 Msa0079550:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG - chr1_2:57470342-57470361 Msa0079550:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG + chr1_2:57471358-57471377 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG - chr1_2:57471586-57471605 Msa0079550:CDS 50.0%
AGGTGGTTGAATGTCATGGC+GGG - chr1_2:57471587-57471606 Msa0079550:CDS 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG - chr1_2:57471593-57471612 Msa0079550:CDS 50.0%
! TACCTGGGAGTGGAAGTGTA+AGG + chr1_2:57469824-57469843 None:intergenic 50.0%
!! GTGTTGTTTCCGCAACAGCA+AGG + chr1_2:57469947-57469966 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG - chr1_2:57470094-57470113 Msa0079550:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG - chr1_2:57470341-57470360 Msa0079550:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG - chr1_2:57470342-57470361 Msa0079550:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG + chr1_2:57471358-57471377 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG - chr1_2:57471586-57471605 Msa0079550:CDS 50.0%
AGGTGGTTGAATGTCATGGC+GGG - chr1_2:57471587-57471606 Msa0079550:CDS 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG - chr1_2:57471593-57471612 Msa0079550:CDS 50.0%
AGCCTTACACTTCCACTCCC+AGG - chr1_2:57469819-57469838 Msa0079550:three_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG + chr1_2:57469943-57469962 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG - chr1_2:57470056-57470075 Msa0079550:three_prime_UTR 55.0%
TACCAGCGTCATGTCTGGTC+TGG - chr1_2:57470287-57470306 Msa0079550:intron 55.0%
CGCCATGACATTCAACCACC+TGG + chr1_2:57471588-57471607 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG - chr1_2:57471592-57471611 Msa0079550:CDS 55.0%
AGCCTTACACTTCCACTCCC+AGG - chr1_2:57469819-57469838 Msa0079550:three_prime_UTR 55.0%
TGTTTCCGCAACAGCAAGGG+TGG + chr1_2:57469943-57469962 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG - chr1_2:57470056-57470075 Msa0079550:three_prime_UTR 55.0%
TACCAGCGTCATGTCTGGTC+TGG - chr1_2:57470287-57470306 Msa0079550:intron 55.0%
CGCCATGACATTCAACCACC+TGG + chr1_2:57471588-57471607 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG - chr1_2:57471592-57471611 Msa0079550:CDS 55.0%
GGGGAGGAGAGAAAAGCCTC+AGG + chr1_2:57470086-57470105 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG + chr1_2:57470292-57470311 None:intergenic 60.0%
GGGGAGGAGAGAAAAGCCTC+AGG + chr1_2:57470086-57470105 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG + chr1_2:57470292-57470311 None:intergenic 60.0%
!! GGACGCCACCCTTGCTGTTG+CGG - chr1_2:57469935-57469954 Msa0079550:three_prime_UTR 65.0%
!! GGACGCCACCCTTGCTGTTG+CGG - chr1_2:57469935-57469954 Msa0079550:three_prime_UTR 65.0%
! GCGGAGTGACGGAGCTCCTG+AGG - chr1_2:57470067-57470086 Msa0079550:three_prime_UTR 70.0%
! GCGGAGTGACGGAGCTCCTG+AGG - chr1_2:57470067-57470086 Msa0079550:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57469712 57471841 57469712 ID=Msa0079550;Name=Msa0079550
chr1_2 mRNA 57469712 57471841 57469712 ID=Msa0079550-mRNA-1;Parent=Msa0079550;Name=Msa0079550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=28|0.66|0.85|1|0.83|0.71|7|379|212
chr1_2 exon 57469712 57470214 57469712 ID=Msa0079550-mRNA-1:exon:18205;Parent=Msa0079550-mRNA-1
chr1_2 exon 57470297 57470343 57470297 ID=Msa0079550-mRNA-1:exon:18204;Parent=Msa0079550-mRNA-1
chr1_2 exon 57470439 57470521 57470439 ID=Msa0079550-mRNA-1:exon:18203;Parent=Msa0079550-mRNA-1
chr1_2 exon 57470998 57471095 57470998 ID=Msa0079550-mRNA-1:exon:18202;Parent=Msa0079550-mRNA-1
chr1_2 exon 57471438 57471646 57471438 ID=Msa0079550-mRNA-1:exon:18201;Parent=Msa0079550-mRNA-1
chr1_2 exon 57471713 57471788 57471713 ID=Msa0079550-mRNA-1:exon:18200;Parent=Msa0079550-mRNA-1
chr1_2 exon 57471812 57471841 57471812 ID=Msa0079550-mRNA-1:exon:18199;Parent=Msa0079550-mRNA-1
chr1_2 five_prime_UTR 57471814 57471841 57471814 ID=Msa0079550-mRNA-1:five_prime_utr;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57471812 57471813 57471812 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57471713 57471788 57471713 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57471438 57471646 57471438 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57470998 57471095 57470998 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57470439 57470521 57470439 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57470297 57470343 57470297 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 CDS 57470091 57470214 57470091 ID=Msa0079550-mRNA-1:cds;Parent=Msa0079550-mRNA-1
chr1_2 three_prime_UTR 57469712 57470090 57469712 ID=Msa0079550-mRNA-1:three_prime_utr;Parent=Msa0079550-mRNA-1
Gene Sequence

>Msa0079550

ATGAAGTCGAATGAAATGGCAAAAACATGCTGCTTCAACGGAAAATCCCCTACAATAGCCTTACACTTCCACTCCCAGAAGTTCACTGAATCTCTTGTTAAGACTAGGACGCCACCCTTGCTGTTGCGGAAACAACACTGCTCAAACAGTTACACACCGTGTAGCAAAAAGACTTGTGCAATTTATAACATGGTAAAAGAAAGAAATGAAACCCCTCAGGTTCTGAAGATTGCAGTGAGCGGAGTGACGGAGCTCCTGAGGCTTTTCTCTCCTCCCCAACAAACAAGTAACGTTGAGAAACAGAATAATGACTCCCCAGTTTCAAGTATTGATGATGTTCTAATCATCATAAAGGATGATTATGACAGCGCTTATTTTGTCACAGGTAGGGACTTATATGCGCGCAACTTGAAATTACTCGTTCCATTCTTCGACTGTGCCTCAATTAGACTACTAAAGATCGAAAAGGATGTTGAATCTGGCACAAATTTTCTGCGTGCATCTTGGAAATTAAGGACCAACTTAAAACTTCCGTGGAGGCCTCTGATTGCTATTGATGGAAGCACTTCTTATGAATTGAATGAAGATTTCAAAGTCAGAATCAAAATGCCTCCTTGCCTCAAAACTTTCGACTCATAA

Protein sequence

>Msa0079550

MKSNEMAKTCCFNGKSPTIALHFHSQKFTESLVKTRTPPLLLRKQHCSNSYTPCSKKTCAIYNMVKERNETPQVLKIAVSGVTELLRLFSPPQQTSNVEKQNNDSPVSSIDDVLIIIKDDYDSAYFVTGRDLYARNLKLLVPFFDCASIRLLKIEKDVESGTNFLRASWKLRTNLKLPWRPLIAIDGSTSYELNEDFKVRIKMPPCLKTFDS*