AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647860 MtrunA17_Chr4g0039301 93.084 535 23 3 1 522 1 534 0.0 1002
Msa0647860 MtrunA17_Chr7g0260671 52.402 458 197 11 58 505 49 495 3.58e-168 485
Msa0647860 MtrunA17_Chr7g0260681 52.368 380 161 10 61 431 52 420 6.86e-137 402
Msa0647860 MtrunA17_Chr2g0283561 43.659 410 194 8 87 483 38 423 5.35e-107 326
Msa0647860 MtrunA17_Chr4g0046011 40.618 421 211 9 87 498 3 393 4.66e-99 305
Msa0647860 MtrunA17_Chr4g0046001 39.192 421 217 9 87 498 12 402 1.56e-96 298
Msa0647860 MtrunA17_Chr7g0214711 45.143 350 161 10 88 429 105 431 1.13e-93 294
Msa0647860 MtrunA17_Chr4g0041311 36.111 432 215 9 90 488 30 433 2.18e-86 273
Msa0647860 MtrunA17_Chr5g0399641 38.601 386 201 7 81 448 128 495 1.23e-83 269
Msa0647860 MtrunA17_Chr7g0250561 38.404 401 197 8 84 449 65 450 3.30e-81 260
Msa0647860 MtrunA17_Chr7g0250611 39.678 373 184 9 87 445 74 419 2.09e-80 257
Msa0647860 MtrunA17_Chr4g0055691 40.476 378 196 8 81 448 122 480 9.20e-78 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647860 AT1G51440.1 70.370 432 115 5 86 506 85 514 0.0 648
Msa0647860 AT1G06800.1 52.063 509 219 11 12 502 3 504 0.0 519
Msa0647860 AT2G30550.2 56.208 443 178 7 70 503 86 521 2.99e-178 512
Msa0647860 AT1G06800.2 51.487 437 189 9 12 431 3 433 3.36e-151 440
Msa0647860 AT2G30550.1 56.417 374 148 6 67 432 83 449 5.44e-149 435
Msa0647860 AT1G30370.1 44.258 418 205 8 83 488 109 510 5.71e-122 368
Msa0647860 AT1G05800.1 47.309 353 158 9 86 430 78 410 5.38e-98 305
Msa0647860 AT2G31690.1 45.763 354 165 11 86 430 86 421 9.99e-95 296
Msa0647860 AT1G06250.1 39.753 405 208 7 92 483 9 390 4.15e-93 290
Msa0647860 AT4G18550.1 40.394 406 204 10 92 483 23 404 4.63e-92 288
Msa0647860 AT4G18550.2 40.394 406 204 10 92 483 40 421 5.38e-92 288
Msa0647860 AT2G42690.1 36.659 431 216 9 92 492 8 411 1.99e-86 273
Msa0647860 AT2G44810.2 40.260 385 180 11 86 445 84 443 4.02e-84 268
Msa0647860 AT2G44810.1 40.584 377 174 11 94 445 2 353 2.69e-83 263
Msa0647860 AT4G16820.1 40.513 390 186 10 77 447 116 478 4.38e-80 259
Msa0647860 AT4G18550.3 42.105 266 139 7 92 346 40 301 3.99e-63 209
Msa0647860 AT1G06250.2 40.134 299 148 5 193 483 1 276 1.23e-62 207
Msa0647860 AT5G18630.3 30.818 159 88 5 213 369 100 238 5.83e-11 63.9
Msa0647860 AT5G18630.1 30.818 159 88 5 213 369 101 239 6.14e-11 64.7
Msa0647860 AT5G18640.5 30.818 159 88 5 213 369 100 238 6.33e-11 63.9
Msa0647860 AT5G18630.2 30.818 159 88 5 213 369 100 238 6.99e-11 64.3

Find 143 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGAACTGAAATTAAAT+TGG 0.207992 4_3:+54063062 Msa0647860:CDS
AATTTAATATGGTTTCAAAA+AGG 0.225064 4_3:+54063190 Msa0647860:CDS
TTAGATTTCTTGAAGAATTT+AGG 0.245553 4_3:-54060554 None:intergenic
TTAATAGAGTAATGGTAATA+AGG 0.248705 4_3:-54059894 None:intergenic
TGGTGGGAATGGGAAGGATA+TGG 0.251258 4_3:-54060092 None:intergenic
TTTGAAGGAAAATGGTGATT+TGG 0.252255 4_3:+54063104 Msa0647860:CDS
ATTGTTGGATTTGTGGTTGA+TGG 0.253342 4_3:-54060129 None:intergenic
TTATCTTAATTCATCGATAT+TGG 0.269992 4_3:-54063685 None:intergenic
CCTGTTTCTACTTTGATTGA+TGG 0.275271 4_3:-54062604 None:intergenic
TTGAAGGAAAATGGTGATTT+GGG 0.292625 4_3:+54063105 Msa0647860:CDS
GCTTACGACATAGCCGAATT+AGG 0.294321 4_3:+54062796 Msa0647860:CDS
AAATCCAAGGCGAGAACAAC+TGG 0.302827 4_3:+54060315 Msa0647860:CDS
AATAATATAGGCGAATTATT+AGG 0.307627 4_3:-54060173 None:intergenic
AGTGCAGGATTGTTCTTTCT+TGG 0.310372 4_3:-54062644 None:intergenic
TGGAGACAAGATGAGAATAA+AGG 0.322904 4_3:+54063276 Msa0647860:CDS
TGCATAGAGGTAGCGGCTTA+TGG 0.364333 4_3:-54060513 None:intergenic
GATTAGAGATATATAATATA+AGG 0.368827 4_3:-54059938 None:intergenic
GATGATGTTCACTCCTAATT+CGG 0.369822 4_3:-54062809 None:intergenic
CTTCCCAGTTGTTCTCGCCT+TGG 0.372841 4_3:-54060319 None:intergenic
GGCTTTCGTTGAGCGATGTA+TGG 0.379405 4_3:+54060288 Msa0647860:CDS
CGCGAACGAGTAAACCGTTA+TGG 0.379883 4_3:-54062860 None:intergenic
GGAAAGGAAAAGGGTATTGT+TGG 0.381722 4_3:-54060144 None:intergenic
CGTTCGCGGGGCCGAGAGTT+GGG 0.383970 4_3:+54062875 Msa0647860:CDS
AATTAGTAAGTGAAATTAGT+TGG 0.384656 4_3:+54059831 Msa0647860:five_prime_UTR
CAAATCACGTGGTCCTTGAT+TGG 0.386663 4_3:-54063428 None:intergenic
ATAAGAGTTGTGATCTTCTA+AGG 0.392001 4_3:+54063229 Msa0647860:CDS
TGTGGAGCCCTTATGCTAAC+TGG 0.405947 4_3:+54060588 Msa0647860:CDS
TTGAAACTGAAATTTCTCAT+TGG 0.419763 4_3:-54062995 None:intergenic
TCGTTCGCGGGGCCGAGAGT+TGG 0.421350 4_3:+54062874 Msa0647860:CDS
GGAATTTGCACTTTAAAGAA+AGG 0.421543 4_3:+54062896 Msa0647860:CDS
GCAAGATGATGTGCAATATC+TGG 0.423197 4_3:-54063363 None:intergenic
CATCTTCCTCTTCGTGCAGT+TGG 0.426552 4_3:-54060229 None:intergenic
TTCTCATTGGTTATAATCCC+CGG 0.428050 4_3:-54062982 None:intergenic
GTGAAATTAGTTGGTTTACA+TGG 0.428115 4_3:+54059840 Msa0647860:five_prime_UTR
GGAGACAAGATGAGAATAAA+GGG 0.429109 4_3:+54063277 Msa0647860:CDS
GACAAGGTTCCAACCGTGCC+GGG 0.432120 4_3:+54062964 Msa0647860:CDS
AAAGGGTATTGTTGGATTTG+TGG 0.432416 4_3:-54060136 None:intergenic
GCTTCCACTAGAGGCCGTTC+AGG 0.434299 4_3:-54063333 None:intergenic
GAAGAAGAGATTAAACGTTT+AGG 0.434314 4_3:+54060638 Msa0647860:CDS
TGATGCTGATTTCTTCATCT+TGG 0.436804 4_3:-54062729 None:intergenic
GGTGGGAATGGGAAGGATAT+GGG 0.438040 4_3:-54060091 None:intergenic
CCTTGGAGTTATGCTCATGT+TGG 0.439341 4_3:+54063045 Msa0647860:CDS
CCATCAATCAAAGTAGAAAC+AGG 0.440706 4_3:+54062604 Msa0647860:CDS
CTGTTTCTACTTTGATTGAT+GGG 0.442102 4_3:-54062603 None:intergenic
TATCCCATCCAGTTAGCATA+AGG 0.442825 4_3:-54060596 None:intergenic
TTTAATCTCTTCTTCGTTGG+TGG 0.443070 4_3:-54060630 None:intergenic
GATCTTCTAAGGAGTGAGTT+TGG 0.443725 4_3:+54063240 Msa0647860:CDS
TAATAGAGTAATGGTAATAA+GGG 0.449692 4_3:-54059893 None:intergenic
TTGAATATAGATGGTGGGAA+TGG 0.451272 4_3:-54060103 None:intergenic
GCGAACGAGTAAACCGTTAT+GGG 0.455006 4_3:-54062859 None:intergenic
GTTATAATCCCCGGCACGGT+TGG 0.455037 4_3:-54062973 None:intergenic
ATAACGGTTTACTCGTTCGC+GGG 0.455590 4_3:+54062862 Msa0647860:CDS
AATGATTTCTTTGCGTAGGA+TGG 0.460085 4_3:-54060363 None:intergenic
CGTTTAGGACGCCGTGACAT+AGG 0.461230 4_3:+54060653 Msa0647860:CDS
GAGCATTTGAGGAATAATAT+AGG 0.461593 4_3:-54060185 None:intergenic
TATGTATGTTTCATTTAGCT+AGG 0.466276 4_3:+54063594 Msa0647860:three_prime_UTR
GTAGAATAAAAGATAGATAG+TGG 0.468844 4_3:+54059998 Msa0647860:five_prime_UTR
CATTTGATGGATGGGTATCA+TGG 0.469639 4_3:+54063156 Msa0647860:CDS
TGAATATAGATGGTGGGAAT+GGG 0.473721 4_3:-54060102 None:intergenic
AAAGAAAGGTGTGAAGAACT+TGG 0.475583 4_3:+54062910 Msa0647860:CDS
AAACAAGATGATGGATGTAA+AGG 0.476717 4_3:+54063465 Msa0647860:three_prime_UTR
GGGGTGTACACATAATTTAG+AGG 0.480604 4_3:+54063125 Msa0647860:CDS
TATGTCGTAAGCGCTGAGTA+TGG 0.482762 4_3:-54062785 None:intergenic
ACGAAGAAGAAGAGCATTTG+AGG 0.487614 4_3:-54060196 None:intergenic
CTCTTTATATAGTGATTGCA+TGG 0.493736 4_3:+54062506 Msa0647860:intron
TGATATAGATTTAAAATATG+TGG 0.496003 4_3:+54063623 Msa0647860:three_prime_UTR
TTATATAGTGATTGCATGGA+GGG 0.497247 4_3:+54062510 Msa0647860:intron
GGGATGGTTCAAACCGATGA+TGG 0.497989 4_3:+54063297 Msa0647860:CDS
TTGCGTAGGATGGGATCCAT+TGG 0.500240 4_3:-54060353 None:intergenic
ACGTTTAATCTCTTCTTCGT+TGG 0.501727 4_3:-54060633 None:intergenic
CACAACCCACCTTCCATCAT+CGG 0.503475 4_3:-54063310 None:intergenic
GATATAGATTTAAAATATGT+GGG 0.503709 4_3:+54063624 Msa0647860:three_prime_UTR
GGAGGCTAGAATGTTGGTTG+AGG 0.504919 4_3:-54060070 None:intergenic
AGGGTGTTATGAAGAAGAAC+AGG 0.507123 4_3:-54060050 None:intergenic
GAGAAACTTTACATGGGAGA+TGG 0.511262 4_3:+54060485 Msa0647860:CDS
ATGATTTCTTTGCGTAGGAT+GGG 0.512394 4_3:-54060362 None:intergenic
GATCAAAACTCAAAATATTG+TGG 0.513294 4_3:+54060431 Msa0647860:CDS
TGACAAGGTTCCAACCGTGC+CGG 0.514175 4_3:+54062963 Msa0647860:CDS
TTTCTTTGAGAAACTTTACA+TGG 0.516670 4_3:+54060478 Msa0647860:CDS
GAGGCTAGAATGTTGGTTGA+GGG 0.517399 4_3:-54060069 None:intergenic
GCATTGGTAGCTTCCAATCA+AGG 0.520891 4_3:+54063415 Msa0647860:CDS
TGTGCCTGAACGGCCTCTAG+TGG 0.525389 4_3:+54063329 Msa0647860:CDS
AAGTGCAAATTCCCAACTCT+CGG 0.525702 4_3:-54062886 None:intergenic
TGAGAATGAACAATAAGTGC+AGG 0.528179 4_3:-54062659 None:intergenic
GCACCGTGACATACATAGAA+TGG 0.533607 4_3:+54062533 Msa0647860:CDS
GGAAGGTCTATTAGATCCAA+TGG 0.534597 4_3:+54060337 Msa0647860:CDS
ATCCCATCCAGTTAGCATAA+GGG 0.536253 4_3:-54060595 None:intergenic
GAGCCCTTATGCTAACTGGA+TGG 0.539926 4_3:+54060592 Msa0647860:CDS
GATATGGGAGGCTAGAATGT+TGG 0.543569 4_3:-54060076 None:intergenic
TTCGTGCAGTTGGTTCATAG+TGG 0.544421 4_3:-54060219 None:intergenic
CGTAAGCGCTGAGTATGGCT+AGG 0.545238 4_3:-54062780 None:intergenic
CGCAAAGAAATCATTCGCTA+TGG 0.545659 4_3:+54060371 Msa0647860:CDS
AGTTTCTCAAAGAAATGTGC+AGG 0.546930 4_3:-54060470 None:intergenic
ATGTATGTTTCATTTAGCTA+GGG 0.547172 4_3:+54063595 Msa0647860:three_prime_UTR
AAAGTATATAGAAGATACAT+TGG 0.550653 4_3:+54063017 Msa0647860:CDS
TTGATGTTGCATAGAGGTAG+CGG 0.552703 4_3:-54060520 None:intergenic
ATTTCTTGAAGAATTTAGGA+AGG 0.554007 4_3:-54060550 None:intergenic
GAAATCAGCATCACAGTCAC+AGG 0.555372 4_3:+54062739 Msa0647860:CDS
ACAGTCACAGGACACAGTCT+TGG 0.567549 4_3:+54062751 Msa0647860:CDS
AACAACTAACGTCCCCATAA+CGG 0.568948 4_3:+54062846 Msa0647860:CDS
GGGAATGGGAAGGATATGGG+AGG 0.569870 4_3:-54060088 None:intergenic
TTCTCATCTTGTCTCCAATG+TGG 0.570582 4_3:-54063270 None:intergenic
AGTTTGGTGTTCCACCACAT+TGG 0.571065 4_3:+54063256 Msa0647860:CDS
TCAAGATGTTAATGGCTCGT+TGG 0.578326 4_3:-54059964 None:intergenic
AATCGCATTCAAAATCGCAT+TGG 0.579406 4_3:+54063399 Msa0647860:CDS
CATAACGGTTTACTCGTTCG+CGG 0.581601 4_3:+54062861 Msa0647860:CDS
GAAGGTGGGTTGTGCCTGAA+CGG 0.583884 4_3:+54063319 Msa0647860:CDS
AGCCCTTATGCTAACTGGAT+GGG 0.586402 4_3:+54060593 Msa0647860:CDS
TCATCTTGTCTCCAATGTGG+TGG 0.589893 4_3:-54063267 None:intergenic
GGTGGATGAGCTTCCACTAG+AGG 0.592564 4_3:-54063342 None:intergenic
TGGTTCAAACCGATGATGGA+AGG 0.596118 4_3:+54063301 Msa0647860:CDS
TATAGATGGTGGGAATGGGA+AGG 0.596124 4_3:-54060098 None:intergenic
TTCAAACCGATGATGGAAGG+TGG 0.599261 4_3:+54063304 Msa0647860:CDS
ATTGGTTATAATCCCCGGCA+CGG 0.605638 4_3:-54062977 None:intergenic
TATATAGTGATTGCATGGAG+GGG 0.612515 4_3:+54062511 Msa0647860:intron
TATCCATTCTATGTATGTCA+CGG 0.618336 4_3:-54062536 None:intergenic
ACAAGGTTCCAACCGTGCCG+GGG 0.622173 4_3:+54062965 Msa0647860:CDS
AGCGAATGATTTCTTTGCGT+AGG 0.624602 4_3:-54060367 None:intergenic
TTTATATAGTGATTGCATGG+AGG 0.625462 4_3:+54062509 Msa0647860:intron
TATGAACCAACTGCACGAAG+AGG 0.628820 4_3:+54060223 Msa0647860:CDS
ATTTGATGGATGGGTATCAT+GGG 0.630818 4_3:+54063157 Msa0647860:CDS
TAACGGTTTACTCGTTCGCG+GGG 0.632196 4_3:+54062863 Msa0647860:CDS
ATATGGGATTAATAGAGTAA+TGG 0.632280 4_3:-54059902 None:intergenic
ACAAGATGAGAATAAAGGGA+TGG 0.636684 4_3:+54063281 Msa0647860:CDS
GTAAGCGCTGAGTATGGCTA+GGG 0.639224 4_3:-54062779 None:intergenic
AATCCAAGGCGAGAACAACT+GGG 0.639358 4_3:+54060316 Msa0647860:CDS
TTCTTTGAGAAACTTTACAT+GGG 0.642102 4_3:+54060479 Msa0647860:CDS
GGAGTGAACATCATCGAAGA+CGG 0.642474 4_3:+54062817 Msa0647860:CDS
TGATGTTTGATGTTGCATAG+AGG 0.642978 4_3:-54060526 None:intergenic
CAAGGCGAGAACAACTGGGA+AGG 0.645261 4_3:+54060320 Msa0647860:CDS
CGAACGAGTAAACCGTTATG+GGG 0.657882 4_3:-54062858 None:intergenic
CCAACATGAGCATAACTCCA+AGG 0.660120 4_3:-54063045 None:intergenic
TAGGGTACATACCTATGTCA+CGG 0.660260 4_3:-54060664 None:intergenic
AGTGGATCTAGTTCCTCGCA+TGG 0.665465 4_3:+54060016 Msa0647860:exon
TGAAGGAAAATGGTGATTTG+GGG 0.667189 4_3:+54063106 Msa0647860:CDS
AATCTAAGATCTCTTCAGTG+TGG 0.668543 4_3:+54060570 Msa0647860:CDS
GATGTATGGAGAGAAATCCA+AGG 0.668805 4_3:+54060302 Msa0647860:CDS
TCAAACCGATGATGGAAGGT+GGG 0.670175 4_3:+54063305 Msa0647860:CDS
ACATCGCTCAACGAAAGCCG+TGG 0.676341 4_3:-54060284 None:intergenic
AGATGATGTGCAATATCTGG+TGG 0.691855 4_3:-54063360 None:intergenic
AATACATAATATTCATGACA+AGG 0.698783 4_3:+54062948 Msa0647860:CDS
GGTACAAGAGAAGCCATGCG+AGG 0.705663 4_3:-54060029 None:intergenic
AAGAAGAAGAAGAATCACCA+CGG 0.725260 4_3:+54060267 Msa0647860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAAAAATAAAA+AGG + chr4_3:54061436-54061455 Msa0647860:intron 0.0%
!! AAAAAATAATAATAATAAAA+AGG - chr4_3:54062418-54062437 None:intergenic 0.0%
!!! TTATTACTTTTGATTTTTTA+GGG - chr4_3:54061365-54061384 None:intergenic 10.0%
!!! TTTATTACTTTTGATTTTTT+AGG - chr4_3:54061366-54061385 None:intergenic 10.0%
!!! ATGTTTTTAAAAGAAATAAT+TGG + chr4_3:54062190-54062209 Msa0647860:intron 10.0%
!! GAAAGATAAAAAATTTAATA+TGG + chr4_3:54063179-54063198 Msa0647860:CDS 10.0%
!! GATTAGAGATATATAATATA+AGG - chr4_3:54059941-54059960 None:intergenic 15.0%
!!! GTAATTAAATTAAGAGTATA+GGG - chr4_3:54060685-54060704 None:intergenic 15.0%
!!! ATATAAATATATGGTCTTTT+GGG - chr4_3:54060752-54060771 None:intergenic 15.0%
!!! AATATAAATATATGGTCTTT+TGG - chr4_3:54060753-54060772 None:intergenic 15.0%
!! TCAGAAACAATATAAATATA+TGG - chr4_3:54060761-54060780 None:intergenic 15.0%
!!! AGCTTATATCATTTTTTTAT+TGG + chr4_3:54060911-54060930 Msa0647860:intron 15.0%
!!! TATTACTTTTGATTTTTTAG+GGG - chr4_3:54061364-54061383 None:intergenic 15.0%
!! TCAAAAGTAATAAAATTCAT+TGG + chr4_3:54061372-54061391 Msa0647860:intron 15.0%
!!! TTGGTTTTTTATAAATTCAT+TGG + chr4_3:54061391-54061410 Msa0647860:intron 15.0%
!! AATGAAGGTAAAAAAAAAAA+AGG - chr4_3:54061573-54061592 None:intergenic 15.0%
!!! TTTTCAATTTACAATAATGA+AGG - chr4_3:54061588-54061607 None:intergenic 15.0%
!!! AATCAAACAGTTTTAAAAAA+TGG + chr4_3:54061670-54061689 Msa0647860:intron 15.0%
!!! ATCAAACAGTTTTAAAAAAT+GGG + chr4_3:54061671-54061690 Msa0647860:intron 15.0%
!! ACTAAAAAAAGAAAAAAGAA+AGG + chr4_3:54062068-54062087 Msa0647860:intron 15.0%
!! CTAAAAAAAGAAAAAAGAAA+GGG + chr4_3:54062069-54062088 Msa0647860:intron 15.0%
!! ATTTCAATTATATATTGAGA+TGG - chr4_3:54062130-54062149 None:intergenic 15.0%
!!! AAAAAACTAGTATTTTTCTA+TGG - chr4_3:54062330-54062349 None:intergenic 15.0%
!! AAATTTCTTCAAAAAAGTAA+AGG + chr4_3:54062380-54062399 Msa0647860:intron 15.0%
!! AATTTAATATGGTTTCAAAA+AGG + chr4_3:54063190-54063209 Msa0647860:CDS 15.0%
!! ATTTAATATGGTTTCAAAAA+GGG + chr4_3:54063191-54063210 Msa0647860:CDS 15.0%
!!! TGATATAGATTTAAAATATG+TGG + chr4_3:54063623-54063642 Msa0647860:three_prime_UTR 15.0%
!!! GATATAGATTTAAAATATGT+GGG + chr4_3:54063624-54063643 Msa0647860:three_prime_UTR 15.0%
!!! AGTTTCTTTTATTAAAACTT+AGG + chr4_3:54063648-54063667 Msa0647860:three_prime_UTR 15.0%
!! AATTAGTAAGTGAAATTAGT+TGG + chr4_3:54059831-54059850 Msa0647860:five_prime_UTR 20.0%
!! TAATAGAGTAATGGTAATAA+GGG - chr4_3:54059896-54059915 None:intergenic 20.0%
!! TTAATAGAGTAATGGTAATA+AGG - chr4_3:54059897-54059916 None:intergenic 20.0%
!! AAAAATCATCAAGATGTTAA+TGG - chr4_3:54059975-54059994 None:intergenic 20.0%
!!! AATTATTAGGTTTTTTGGAA+AGG - chr4_3:54060163-54060182 None:intergenic 20.0%
!! AATAATATAGGCGAATTATT+AGG - chr4_3:54060176-54060195 None:intergenic 20.0%
!! TTAGATTTCTTGAAGAATTT+AGG - chr4_3:54060557-54060576 None:intergenic 20.0%
!!! GGTAATTAAATTAAGAGTAT+AGG - chr4_3:54060686-54060705 None:intergenic 20.0%
!!! ACTTATCTTTATTTTATGAG+TGG - chr4_3:54060707-54060726 None:intergenic 20.0%
!!! AGTATTAACAACTTTTAATG+CGG + chr4_3:54061255-54061274 Msa0647860:intron 20.0%
!! ACAAACTCGTAAATTAAAAA+TGG - chr4_3:54061636-54061655 None:intergenic 20.0%
!!! TCAAACAGTTTTAAAAAATG+GGG + chr4_3:54061672-54061691 Msa0647860:intron 20.0%
!!! AAAACACTTAATTTTTCAAG+TGG - chr4_3:54061870-54061889 None:intergenic 20.0%
!! AGAGAGAAAATCATTATTTA+TGG - chr4_3:54061933-54061952 None:intergenic 20.0%
!! TTAAAAGAAATAATTGGTGA+CGG + chr4_3:54062196-54062215 Msa0647860:intron 20.0%
!! AACCACTATAATTATTGTTA+TGG - chr4_3:54062289-54062308 None:intergenic 20.0%
!! ATAATAATAAAAAGGTCCAA+GGG - chr4_3:54062410-54062429 None:intergenic 20.0%
!! AATAATAATAAAAAGGTCCA+AGG - chr4_3:54062411-54062430 None:intergenic 20.0%
!! AATACATAATATTCATGACA+AGG + chr4_3:54062948-54062967 Msa0647860:CDS 20.0%
!! AAAGTATATAGAAGATACAT+TGG + chr4_3:54063017-54063036 Msa0647860:CDS 20.0%
!!! CATACATACTTTTTTTTAAG+AGG - chr4_3:54063582-54063601 None:intergenic 20.0%
! ATATGGGATTAATAGAGTAA+TGG - chr4_3:54059905-54059924 None:intergenic 25.0%
! GTAGAATAAAAGATAGATAG+TGG + chr4_3:54059998-54060017 Msa0647860:five_prime_UTR 25.0%
!!! TGATGGATTTTGAATATAGA+TGG - chr4_3:54060115-54060134 None:intergenic 25.0%
! GATCAAAACTCAAAATATTG+TGG + chr4_3:54060431-54060450 Msa0647860:CDS 25.0%
!! TTTCTTTGAGAAACTTTACA+TGG + chr4_3:54060478-54060497 Msa0647860:CDS 25.0%
!! TTCTTTGAGAAACTTTACAT+GGG + chr4_3:54060479-54060498 Msa0647860:CDS 25.0%
! ATTTCTTGAAGAATTTAGGA+AGG - chr4_3:54060553-54060572 None:intergenic 25.0%
! TTATTGGCAAAAAAAACATG+TGG + chr4_3:54061173-54061192 Msa0647860:intron 25.0%
! TATTGGCAAAAAAAACATGT+GGG + chr4_3:54061174-54061193 Msa0647860:intron 25.0%
! GAAAGAAAAAAGTTTGTGAT+TGG + chr4_3:54061204-54061223 Msa0647860:intron 25.0%
! TAAAAAGGCTTAAAACGATA+CGG + chr4_3:54061451-54061470 Msa0647860:intron 25.0%
!!! AGAGTTTAACTTTAAAACAG+AGG + chr4_3:54061735-54061754 Msa0647860:intron 25.0%
! CTTGAACTAGTAATCTATTA+AGG + chr4_3:54061763-54061782 Msa0647860:intron 25.0%
! TCAATTATATATTGAGATGG+TGG - chr4_3:54062127-54062146 None:intergenic 25.0%
!! TATTGTTATGGAGAACATTT+TGG - chr4_3:54062277-54062296 None:intergenic 25.0%
! CTCCATAACAATAATTATAG+TGG + chr4_3:54062284-54062303 Msa0647860:intron 25.0%
! TTGAAACTGAAATTTCTCAT+TGG - chr4_3:54062998-54063017 None:intergenic 25.0%
! TGTTGGAACTGAAATTAAAT+TGG + chr4_3:54063062-54063081 Msa0647860:CDS 25.0%
!!! TAGAAATAGTCCTTTTTTGA+AGG + chr4_3:54063089-54063108 Msa0647860:CDS 25.0%
! TATGTATGTTTCATTTAGCT+AGG + chr4_3:54063594-54063613 Msa0647860:three_prime_UTR 25.0%
! ATGTATGTTTCATTTAGCTA+GGG + chr4_3:54063595-54063614 Msa0647860:three_prime_UTR 25.0%
! GTGAAATTAGTTGGTTTACA+TGG + chr4_3:54059840-54059859 Msa0647860:five_prime_UTR 30.0%
! GGATTTTGAATATAGATGGT+GGG - chr4_3:54060111-54060130 None:intergenic 30.0%
! TGGATTTTGAATATAGATGG+TGG - chr4_3:54060112-54060131 None:intergenic 30.0%
!!! AGGTTTTTTGGAAAGGAAAA+GGG - chr4_3:54060156-54060175 None:intergenic 30.0%
!!! TAGGTTTTTTGGAAAGGAAA+AGG - chr4_3:54060157-54060176 None:intergenic 30.0%
!!! AGGCGAATTATTAGGTTTTT+TGG - chr4_3:54060168-54060187 None:intergenic 30.0%
GAGCATTTGAGGAATAATAT+AGG - chr4_3:54060188-54060207 None:intergenic 30.0%
GAAGAAGAGATTAAACGTTT+AGG + chr4_3:54060638-54060657 Msa0647860:CDS 30.0%
! AATTGTTTCTTCTCTCTCTT+TGG + chr4_3:54060787-54060806 Msa0647860:intron 30.0%
! ACTGACTTAGATGTATACAA+TGG + chr4_3:54060820-54060839 Msa0647860:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr4_3:54060965-54060984 Msa0647860:intron 30.0%
!!! TTTGCTATTCTTTTGACATG+TGG + chr4_3:54061144-54061163 Msa0647860:intron 30.0%
!! TTGCTATTCTTTTGACATGT+GGG + chr4_3:54061145-54061164 Msa0647860:intron 30.0%
AGAAAAAAGTTTGTGATTGG+TGG + chr4_3:54061207-54061226 Msa0647860:intron 30.0%
AAAAAATGGGGAATTAACTG+TGG + chr4_3:54061684-54061703 Msa0647860:intron 30.0%
ACTAATTGACCACTTTACAA+TGG + chr4_3:54061708-54061727 Msa0647860:intron 30.0%
TTTAGTTATGTTTGTGCGTA+AGG - chr4_3:54062054-54062073 None:intergenic 30.0%
!! ATGGAGAACATTTTGGTATT+TGG - chr4_3:54062270-54062289 None:intergenic 30.0%
CTCTTTATATAGTGATTGCA+TGG + chr4_3:54062506-54062525 Msa0647860:intron 30.0%
TTTATATAGTGATTGCATGG+AGG + chr4_3:54062509-54062528 Msa0647860:intron 30.0%
TTATATAGTGATTGCATGGA+GGG + chr4_3:54062510-54062529 Msa0647860:intron 30.0%
TATCCATTCTATGTATGTCA+CGG - chr4_3:54062539-54062558 None:intergenic 30.0%
! CTTCATGTAGAATGTCTTTT+AGG - chr4_3:54062567-54062586 None:intergenic 30.0%
!! CTGTTTCTACTTTGATTGAT+GGG - chr4_3:54062606-54062625 None:intergenic 30.0%
! GGAATTTGCACTTTAAAGAA+AGG + chr4_3:54062896-54062915 Msa0647860:CDS 30.0%
!!! AGTCCTTTTTTGAAGGAAAA+TGG + chr4_3:54063096-54063115 Msa0647860:CDS 30.0%
! TCACCATTTTCCTTCAAAAA+AGG - chr4_3:54063102-54063121 None:intergenic 30.0%
TTTGAAGGAAAATGGTGATT+TGG + chr4_3:54063104-54063123 Msa0647860:CDS 30.0%
TTGAAGGAAAATGGTGATTT+GGG + chr4_3:54063105-54063124 Msa0647860:CDS 30.0%
!! TACTTTTGCATTTGATGGAT+GGG + chr4_3:54063148-54063167 Msa0647860:CDS 30.0%
ATAAGAGTTGTGATCTTCTA+AGG + chr4_3:54063229-54063248 Msa0647860:CDS 30.0%
!!! CACGTGATTTGTTTTTTGTA+GGG + chr4_3:54063440-54063459 Msa0647860:exon 30.0%
!! AAACAAGATGATGGATGTAA+AGG + chr4_3:54063465-54063484 Msa0647860:three_prime_UTR 30.0%
!! TGAATATAGATGGTGGGAAT+GGG - chr4_3:54060105-54060124 None:intergenic 35.0%
!! TTGAATATAGATGGTGGGAA+TGG - chr4_3:54060106-54060125 None:intergenic 35.0%
ATTGTTGGATTTGTGGTTGA+TGG - chr4_3:54060132-54060151 None:intergenic 35.0%
!! AAAGGGTATTGTTGGATTTG+TGG - chr4_3:54060139-54060158 None:intergenic 35.0%
AAGAAGAAGAAGAATCACCA+CGG + chr4_3:54060267-54060286 Msa0647860:CDS 35.0%
ATGATTTCTTTGCGTAGGAT+GGG - chr4_3:54060365-54060384 None:intergenic 35.0%
AATGATTTCTTTGCGTAGGA+TGG - chr4_3:54060366-54060385 None:intergenic 35.0%
AGTTTCTCAAAGAAATGTGC+AGG - chr4_3:54060473-54060492 None:intergenic 35.0%
TGATGTTTGATGTTGCATAG+AGG - chr4_3:54060529-54060548 None:intergenic 35.0%
! AATCTAAGATCTCTTCAGTG+TGG + chr4_3:54060570-54060589 Msa0647860:CDS 35.0%
TTTAATCTCTTCTTCGTTGG+TGG - chr4_3:54060633-54060652 None:intergenic 35.0%
ACGTTTAATCTCTTCTTCGT+TGG - chr4_3:54060636-54060655 None:intergenic 35.0%
GTACTATTTGCCACAATTCA+AGG - chr4_3:54061044-54061063 None:intergenic 35.0%
ATAAAGAGCAACCAATCACA+AGG - chr4_3:54061066-54061085 None:intergenic 35.0%
!!! TGACATGTGGGTTTTGTTAT+TGG + chr4_3:54061157-54061176 Msa0647860:intron 35.0%
TGCGGAGATAGAGAAATTTA+TGG + chr4_3:54061273-54061292 Msa0647860:intron 35.0%
ACTCTTACTCCATTGTAAAG+TGG - chr4_3:54061720-54061739 None:intergenic 35.0%
ATAATAAAAAGGTCCAAGGG+CGG - chr4_3:54062407-54062426 None:intergenic 35.0%
TATATAGTGATTGCATGGAG+GGG + chr4_3:54062511-54062530 Msa0647860:intron 35.0%
!! CCTGTTTCTACTTTGATTGA+TGG - chr4_3:54062607-54062626 None:intergenic 35.0%
CCATCAATCAAAGTAGAAAC+AGG + chr4_3:54062604-54062623 Msa0647860:CDS 35.0%
TGAGAATGAACAATAAGTGC+AGG - chr4_3:54062662-54062681 None:intergenic 35.0%
!!! GAAGTCGTTTTATTTCTGAG+AGG - chr4_3:54062699-54062718 None:intergenic 35.0%
!! TGATGCTGATTTCTTCATCT+TGG - chr4_3:54062732-54062751 None:intergenic 35.0%
GATGATGTTCACTCCTAATT+CGG - chr4_3:54062812-54062831 None:intergenic 35.0%
! AAAGAAAGGTGTGAAGAACT+TGG + chr4_3:54062910-54062929 Msa0647860:CDS 35.0%
! TTCTCATTGGTTATAATCCC+CGG - chr4_3:54062985-54063004 None:intergenic 35.0%
!!! AAGATACATTGGCTTTTCCT+TGG + chr4_3:54063028-54063047 Msa0647860:CDS 35.0%
TGAAGGAAAATGGTGATTTG+GGG + chr4_3:54063106-54063125 Msa0647860:CDS 35.0%
!!! AGAGGTACTTTTGCATTTGA+TGG + chr4_3:54063143-54063162 Msa0647860:CDS 35.0%
! GTACTTTTGCATTTGATGGA+TGG + chr4_3:54063147-54063166 Msa0647860:CDS 35.0%
! ATTTGATGGATGGGTATCAT+GGG + chr4_3:54063157-54063176 Msa0647860:CDS 35.0%
TGGAGACAAGATGAGAATAA+AGG + chr4_3:54063276-54063295 Msa0647860:CDS 35.0%
GGAGACAAGATGAGAATAAA+GGG + chr4_3:54063277-54063296 Msa0647860:CDS 35.0%
ACAAGATGAGAATAAAGGGA+TGG + chr4_3:54063281-54063300 Msa0647860:CDS 35.0%
AATCGCATTCAAAATCGCAT+TGG + chr4_3:54063399-54063418 Msa0647860:CDS 35.0%
CCTACAAAAAACAAATCACG+TGG - chr4_3:54063442-54063461 None:intergenic 35.0%
!!! CCACGTGATTTGTTTTTTGT+AGG + chr4_3:54063439-54063458 Msa0647860:exon 35.0%
TGTAGGGAAAAACAAGATGA+TGG + chr4_3:54063456-54063475 Msa0647860:three_prime_UTR 35.0%
AGGTGTGTGTGTGTGTATAT+GGG - chr4_3:54059921-54059940 None:intergenic 40.0%
AAGGTGTGTGTGTGTGTATA+TGG - chr4_3:54059922-54059941 None:intergenic 40.0%
TCAAGATGTTAATGGCTCGT+TGG - chr4_3:54059967-54059986 None:intergenic 40.0%
! AGGGTGTTATGAAGAAGAAC+AGG - chr4_3:54060053-54060072 None:intergenic 40.0%
!! GGAAAGGAAAAGGGTATTGT+TGG - chr4_3:54060147-54060166 None:intergenic 40.0%
!! ACGAAGAAGAAGAGCATTTG+AGG - chr4_3:54060199-54060218 None:intergenic 40.0%
GATGTATGGAGAGAAATCCA+AGG + chr4_3:54060302-54060321 Msa0647860:CDS 40.0%
GGAAGGTCTATTAGATCCAA+TGG + chr4_3:54060337-54060356 Msa0647860:CDS 40.0%
AGCGAATGATTTCTTTGCGT+AGG - chr4_3:54060370-54060389 None:intergenic 40.0%
CGCAAAGAAATCATTCGCTA+TGG + chr4_3:54060371-54060390 Msa0647860:CDS 40.0%
GAGAAACTTTACATGGGAGA+TGG + chr4_3:54060485-54060504 Msa0647860:CDS 40.0%
TTGATGTTGCATAGAGGTAG+CGG - chr4_3:54060523-54060542 None:intergenic 40.0%
ATCCCATCCAGTTAGCATAA+GGG - chr4_3:54060598-54060617 None:intergenic 40.0%
TATCCCATCCAGTTAGCATA+AGG - chr4_3:54060599-54060618 None:intergenic 40.0%
TAGGGTACATACCTATGTCA+CGG - chr4_3:54060667-54060686 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr4_3:54061018-54061037 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr4_3:54061041-54061060 None:intergenic 40.0%
GGCAAATAGTACCTTGTGAT+TGG + chr4_3:54061052-54061071 Msa0647860:intron 40.0%
AGTGCAGGATTGTTCTTTCT+TGG - chr4_3:54062647-54062666 None:intergenic 40.0%
AACAACTAACGTCCCCATAA+CGG + chr4_3:54062846-54062865 Msa0647860:CDS 40.0%
AAGTGCAAATTCCCAACTCT+CGG - chr4_3:54062889-54062908 None:intergenic 40.0%
GGGGTGTACACATAATTTAG+AGG + chr4_3:54063125-54063144 Msa0647860:CDS 40.0%
! CATTTGATGGATGGGTATCA+TGG + chr4_3:54063156-54063175 Msa0647860:CDS 40.0%
! GATCTTCTAAGGAGTGAGTT+TGG + chr4_3:54063240-54063259 Msa0647860:CDS 40.0%
TTCTCATCTTGTCTCCAATG+TGG - chr4_3:54063273-54063292 None:intergenic 40.0%
AGATGATGTGCAATATCTGG+TGG - chr4_3:54063363-54063382 None:intergenic 40.0%
GCAAGATGATGTGCAATATC+TGG - chr4_3:54063366-54063385 None:intergenic 40.0%
! GAGGCTAGAATGTTGGTTGA+GGG - chr4_3:54060072-54060091 None:intergenic 45.0%
GATATGGGAGGCTAGAATGT+TGG - chr4_3:54060079-54060098 None:intergenic 45.0%
!! TATAGATGGTGGGAATGGGA+AGG - chr4_3:54060101-54060120 None:intergenic 45.0%
! TTCGTGCAGTTGGTTCATAG+TGG - chr4_3:54060222-54060241 None:intergenic 45.0%
TATGAACCAACTGCACGAAG+AGG + chr4_3:54060223-54060242 Msa0647860:CDS 45.0%
AAATCCAAGGCGAGAACAAC+TGG + chr4_3:54060315-54060334 Msa0647860:CDS 45.0%
AATCCAAGGCGAGAACAACT+GGG + chr4_3:54060316-54060335 Msa0647860:CDS 45.0%
AGCCCTTATGCTAACTGGAT+GGG + chr4_3:54060593-54060612 Msa0647860:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr4_3:54061024-54061043 None:intergenic 45.0%
! AAAACGATACGGCGCTGAAA+AGG + chr4_3:54061462-54061481 Msa0647860:intron 45.0%
AAAAAGTAAAGGTCCGCCCT+TGG + chr4_3:54062391-54062410 Msa0647860:intron 45.0%
GCACCGTGACATACATAGAA+TGG + chr4_3:54062533-54062552 Msa0647860:CDS 45.0%
GAAATCAGCATCACAGTCAC+AGG + chr4_3:54062739-54062758 Msa0647860:CDS 45.0%
!! TATGTCGTAAGCGCTGAGTA+TGG - chr4_3:54062788-54062807 None:intergenic 45.0%
GCTTACGACATAGCCGAATT+AGG + chr4_3:54062796-54062815 Msa0647860:CDS 45.0%
GGAGTGAACATCATCGAAGA+CGG + chr4_3:54062817-54062836 Msa0647860:CDS 45.0%
CGAACGAGTAAACCGTTATG+GGG - chr4_3:54062861-54062880 None:intergenic 45.0%
GCGAACGAGTAAACCGTTAT+GGG - chr4_3:54062862-54062881 None:intergenic 45.0%
CATAACGGTTTACTCGTTCG+CGG + chr4_3:54062861-54062880 Msa0647860:CDS 45.0%
ATAACGGTTTACTCGTTCGC+GGG + chr4_3:54062862-54062881 Msa0647860:CDS 45.0%
ATTGGTTATAATCCCCGGCA+CGG - chr4_3:54062980-54062999 None:intergenic 45.0%
CCAACATGAGCATAACTCCA+AGG - chr4_3:54063048-54063067 None:intergenic 45.0%
CCTTGGAGTTATGCTCATGT+TGG + chr4_3:54063045-54063064 Msa0647860:CDS 45.0%
!! AGTTTGGTGTTCCACCACAT+TGG + chr4_3:54063256-54063275 Msa0647860:CDS 45.0%
TCATCTTGTCTCCAATGTGG+TGG - chr4_3:54063270-54063289 None:intergenic 45.0%
!! TGGTTCAAACCGATGATGGA+AGG + chr4_3:54063301-54063320 Msa0647860:CDS 45.0%
!! TTCAAACCGATGATGGAAGG+TGG + chr4_3:54063304-54063323 Msa0647860:CDS 45.0%
!! TCAAACCGATGATGGAAGGT+GGG + chr4_3:54063305-54063324 Msa0647860:CDS 45.0%
! GCATTGGTAGCTTCCAATCA+AGG + chr4_3:54063415-54063434 Msa0647860:CDS 45.0%
CAAATCACGTGGTCCTTGAT+TGG - chr4_3:54063431-54063450 None:intergenic 45.0%
! AGTGGATCTAGTTCCTCGCA+TGG + chr4_3:54060016-54060035 Msa0647860:exon 50.0%
! GGAGGCTAGAATGTTGGTTG+AGG - chr4_3:54060073-54060092 None:intergenic 50.0%
GGTGGGAATGGGAAGGATAT+GGG - chr4_3:54060094-54060113 None:intergenic 50.0%
TGGTGGGAATGGGAAGGATA+TGG - chr4_3:54060095-54060114 None:intergenic 50.0%
CATCTTCCTCTTCGTGCAGT+TGG - chr4_3:54060232-54060251 None:intergenic 50.0%
GGCTTTCGTTGAGCGATGTA+TGG + chr4_3:54060288-54060307 Msa0647860:CDS 50.0%
TTGCGTAGGATGGGATCCAT+TGG - chr4_3:54060356-54060375 None:intergenic 50.0%
! TGCATAGAGGTAGCGGCTTA+TGG - chr4_3:54060516-54060535 None:intergenic 50.0%
TGTGGAGCCCTTATGCTAAC+TGG + chr4_3:54060588-54060607 Msa0647860:CDS 50.0%
GAGCCCTTATGCTAACTGGA+TGG + chr4_3:54060592-54060611 Msa0647860:CDS 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr4_3:54061031-54061050 Msa0647860:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr4_3:54061036-54061055 None:intergenic 50.0%
! GATACGGCGCTGAAAAGGAA+CGG + chr4_3:54061467-54061486 Msa0647860:intron 50.0%
ACAGTCACAGGACACAGTCT+TGG + chr4_3:54062751-54062770 Msa0647860:CDS 50.0%
!! GTAAGCGCTGAGTATGGCTA+GGG - chr4_3:54062782-54062801 None:intergenic 50.0%
CGCGAACGAGTAAACCGTTA+TGG - chr4_3:54062863-54062882 None:intergenic 50.0%
TAACGGTTTACTCGTTCGCG+GGG + chr4_3:54062863-54062882 Msa0647860:CDS 50.0%
GGGATGGTTCAAACCGATGA+TGG + chr4_3:54063297-54063316 Msa0647860:CDS 50.0%
CACAACCCACCTTCCATCAT+CGG - chr4_3:54063313-54063332 None:intergenic 50.0%
GGTACAAGAGAAGCCATGCG+AGG - chr4_3:54060032-54060051 None:intergenic 55.0%
GGGAATGGGAAGGATATGGG+AGG - chr4_3:54060091-54060110 None:intergenic 55.0%
ACATCGCTCAACGAAAGCCG+TGG - chr4_3:54060287-54060306 None:intergenic 55.0%
CTTCCCAGTTGTTCTCGCCT+TGG - chr4_3:54060322-54060341 None:intergenic 55.0%
CAAGGCGAGAACAACTGGGA+AGG + chr4_3:54060320-54060339 Msa0647860:CDS 55.0%
! CGTTTAGGACGCCGTGACAT+AGG + chr4_3:54060653-54060672 Msa0647860:CDS 55.0%
!! CGTAAGCGCTGAGTATGGCT+AGG - chr4_3:54062783-54062802 None:intergenic 55.0%
TGACAAGGTTCCAACCGTGC+CGG + chr4_3:54062963-54062982 Msa0647860:CDS 55.0%
GTTATAATCCCCGGCACGGT+TGG - chr4_3:54062976-54062995 None:intergenic 55.0%
!! GAAGGTGGGTTGTGCCTGAA+CGG + chr4_3:54063319-54063338 Msa0647860:CDS 55.0%
GGTGGATGAGCTTCCACTAG+AGG - chr4_3:54063345-54063364 None:intergenic 55.0%
GACAAGGTTCCAACCGTGCC+GGG + chr4_3:54062964-54062983 Msa0647860:CDS 60.0%
ACAAGGTTCCAACCGTGCCG+GGG + chr4_3:54062965-54062984 Msa0647860:CDS 60.0%
TGTGCCTGAACGGCCTCTAG+TGG + chr4_3:54063329-54063348 Msa0647860:CDS 60.0%
GCTTCCACTAGAGGCCGTTC+AGG - chr4_3:54063336-54063355 None:intergenic 60.0%
TCGTTCGCGGGGCCGAGAGT+TGG + chr4_3:54062874-54062893 Msa0647860:CDS 70.0%
CGTTCGCGGGGCCGAGAGTT+GGG + chr4_3:54062875-54062894 Msa0647860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54059827 54063694 54059827 ID=Msa0647860;Name=Msa0647860
chr4_3 mRNA 54059827 54063694 54059827 ID=Msa0647860-mRNA-1;Parent=Msa0647860;Name=Msa0647860-mRNA-1;_AED=0.00;_eAED=0.00;_QI=208|1|1|1|1|1|2|248|522
chr4_3 exon 54059827 54060674 54059827 ID=Msa0647860-mRNA-1:exon:13583;Parent=Msa0647860-mRNA-1
chr4_3 exon 54062518 54063694 54062518 ID=Msa0647860-mRNA-1:exon:13584;Parent=Msa0647860-mRNA-1
chr4_3 five_prime_UTR 54059827 54060034 54059827 ID=Msa0647860-mRNA-1:five_prime_utr;Parent=Msa0647860-mRNA-1
chr4_3 CDS 54060035 54060674 54060035 ID=Msa0647860-mRNA-1:cds;Parent=Msa0647860-mRNA-1
chr4_3 CDS 54062518 54063446 54062518 ID=Msa0647860-mRNA-1:cds;Parent=Msa0647860-mRNA-1
chr4_3 three_prime_UTR 54063447 54063694 54063447 ID=Msa0647860-mRNA-1:three_prime_utr;Parent=Msa0647860-mRNA-1
Gene Sequence

>Msa0647860

ATGGCTTCTCTTGTACCTGTTCTTCTTCATAACACCCTCAACCAACATTCTAGCCTCCCATATCCTTCCCATTCCCACCATCTATATTCAAAATCCATCAACCACAAATCCAACAATACCCTTTTCCTTTCCAAAAAACCTAATAATTCGCCTATATTATTCCTCAAATGCTCTTCTTCTTCGTCCACTATGAACCAACTGCACGAAGAGGAAGATGAAGAAGAAGAAAAAGAAGAAGAAGAAGAATCACCACGGCTTTCGTTGAGCGATGTATGGAGAGAAATCCAAGGCGAGAACAACTGGGAAGGTCTATTAGATCCAATGGATCCCATCCTACGCAAAGAAATCATTCGCTATGGTGAGCTAGCTCAAGCATGTTACGATTCATTCGACTTTGATCAAAACTCAAAATATTGTGGAACATGCAAGTATCATCCTGCACATTTCTTTGAGAAACTTTACATGGGAGATGGATACACCATAAGCCGCTACCTCTATGCAACATCAAACATCAACCTTCCTAAATTCTTCAAGAAATCTAAGATCTCTTCAGTGTGGAGCCCTTATGCTAACTGGATGGGATACATAGCTGTTTCCACCAACGAAGAAGAGATTAAACGTTTAGGACGCCGTGACATAGTGATTGCATGGAGGGGCACCGTGACATACATAGAATGGATATACGACCTAAAAGACATTCTACATGAAGCAAACTTCAAAAACGACCCATCAATCAAAGTAGAAACAGGATTCTACGACTTATACACCAAGAAAGAACAATCCTGCACTTATTGTTCATTCTCAGCTCGAGAACAAGTCCTCTCAGAAATAAAACGACTTCTTCAATTCTACCAAGATGAAGAAATCAGCATCACAGTCACAGGACACAGTCTTGGTGCTGCCCTAGCCATACTCAGCGCTTACGACATAGCCGAATTAGGAGTGAACATCATCGAAGACGGTGACAAAACAACTAACGTCCCCATAACGGTTTACTCGTTCGCGGGGCCGAGAGTTGGGAATTTGCACTTTAAAGAAAGGTGTGAAGAACTTGGTGTTAAAGTTTTGAGAATACATAATATTCATGACAAGGTTCCAACCGTGCCGGGGATTATAACCAATGAGAAATTTCAGTTTCAAAAGTATATAGAAGATACATTGGCTTTTCCTTGGAGTTATGCTCATGTTGGAACTGAAATTAAATTGGATCATAGAAATAGTCCTTTTTTGAAGGAAAATGGTGATTTGGGGTGTACACATAATTTAGAGGTACTTTTGCATTTGATGGATGGGTATCATGGGAAAGATAAAAAATTTAATATGGTTTCAAAAAGGGATATTGCACTTGTGAATAAGAGTTGTGATCTTCTAAGGAGTGAGTTTGGTGTTCCACCACATTGGAGACAAGATGAGAATAAAGGGATGGTTCAAACCGATGATGGAAGGTGGGTTGTGCCTGAACGGCCTCTAGTGGAAGCTCATCCACCAGATATTGCACATCATCTTGCATTAGTGCTTAAAAATCGCATTCAAAATCGCATTGGTAGCTTCCAATCAAGGACCACGTGA

Protein sequence

>Msa0647860

MASLVPVLLHNTLNQHSSLPYPSHSHHLYSKSINHKSNNTLFLSKKPNNSPILFLKCSSSSSTMNQLHEEEDEEEEKEEEEESPRLSLSDVWREIQGENNWEGLLDPMDPILRKEIIRYGELAQACYDSFDFDQNSKYCGTCKYHPAHFFEKLYMGDGYTISRYLYATSNINLPKFFKKSKISSVWSPYANWMGYIAVSTNEEEIKRLGRRDIVIAWRGTVTYIEWIYDLKDILHEANFKNDPSIKVETGFYDLYTKKEQSCTYCSFSAREQVLSEIKRLLQFYQDEEISITVTGHSLGAALAILSAYDIAELGVNIIEDGDKTTNVPITVYSFAGPRVGNLHFKERCEELGVKVLRIHNIHDKVPTVPGIITNEKFQFQKYIEDTLAFPWSYAHVGTEIKLDHRNSPFLKENGDLGCTHNLEVLLHLMDGYHGKDKKFNMVSKRDIALVNKSCDLLRSEFGVPPHWRQDENKGMVQTDDGRWVVPERPLVEAHPPDIAHHLALVLKNRIQNRIGSFQSRTT*