Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882340 | XP_013451608.1 | 96.016 | 502 | 18 | 2 | 1 | 501 | 1 | 501 | 0.0 | 987 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882340 | A0A072U8C6 | 96.016 | 502 | 18 | 2 | 1 | 501 | 1 | 501 | 0.0 | 987 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0882340 | 0.814114 | 1.817019e-51 | -8.615850e-47 |
| Msa0025090 | Msa0882340 | 0.805750 | 1.148197e-49 | -8.615850e-47 |
| Msa0026120 | Msa0882340 | 0.803437 | 3.487023e-49 | -8.615850e-47 |
| Msa0030320 | Msa0882340 | 0.804855 | 1.767807e-49 | -8.615850e-47 |
| Msa0032040 | Msa0882340 | 0.831543 | 1.572718e-55 | -8.615850e-47 |
| Msa0040190 | Msa0882340 | 0.835462 | 1.654524e-56 | -8.615850e-47 |
| Msa0047760 | Msa0882340 | 0.828121 | 1.072024e-54 | -8.615850e-47 |
| Msa0063850 | Msa0882340 | 0.810503 | 1.116186e-50 | -8.615850e-47 |
| Msa0072710 | Msa0882340 | 0.831344 | 1.760588e-55 | -8.615850e-47 |
| Msa0077920 | Msa0882340 | 0.816220 | 6.185905e-52 | -8.615850e-47 |
| Msa0084550 | Msa0882340 | 0.810389 | 1.180999e-50 | -8.615850e-47 |
| Msa0087880 | Msa0882340 | 0.846108 | 2.672107e-59 | -8.615850e-47 |
| Msa0089410 | Msa0882340 | 0.827227 | 1.757312e-54 | -8.615850e-47 |
| Msa0112800 | Msa0882340 | 0.817197 | 3.735801e-52 | -8.615850e-47 |
| Msa0114960 | Msa0882340 | 0.847518 | 1.099286e-59 | -8.615850e-47 |
| Msa0120310 | Msa0882340 | 0.806533 | 7.855138e-50 | -8.615850e-47 |
| Msa0607440 | Msa0882340 | 0.805656 | 1.201483e-49 | -8.615850e-47 |
| Msa0607620 | Msa0882340 | 0.807348 | 5.281344e-50 | -8.615850e-47 |
| Msa0624890 | Msa0882340 | 0.822252 | 2.616159e-53 | -8.615850e-47 |
| Msa0626890 | Msa0882340 | 0.820166 | 7.915983e-53 | -8.615850e-47 |
| Msa0639880 | Msa0882340 | 0.817005 | 4.127367e-52 | -8.615850e-47 |
| Msa0641970 | Msa0882340 | 0.806129 | 9.557442e-50 | -8.615850e-47 |
| Msa0657820 | Msa0882340 | 0.825053 | 5.779410e-54 | -8.615850e-47 |
| Msa0659130 | Msa0882340 | 0.811465 | 6.907069e-51 | -8.615850e-47 |
| Msa0665010 | Msa0882340 | 0.851820 | 6.919530e-61 | -8.615850e-47 |
| Msa0675250 | Msa0882340 | 0.801831 | 7.477068e-49 | -8.615850e-47 |
| Msa0684910 | Msa0882340 | 0.800261 | 1.565770e-48 | -8.615850e-47 |
| Msa0687320 | Msa0882340 | 0.813752 | 2.183198e-51 | -8.615850e-47 |
| Msa0690580 | Msa0882340 | 0.802124 | 6.510331e-49 | -8.615850e-47 |
| Msa0697230 | Msa0882340 | 0.820793 | 5.684879e-53 | -8.615850e-47 |
| Msa0705610 | Msa0882340 | 0.809690 | 1.670392e-50 | -8.615850e-47 |
| Msa0714020 | Msa0882340 | 0.801744 | 7.791255e-49 | -8.615850e-47 |
| Msa0714160 | Msa0882340 | 0.805075 | 1.590421e-49 | -8.615850e-47 |
| Msa0715050 | Msa0882340 | 0.810045 | 1.400720e-50 | -8.615850e-47 |
| Msa0741710 | Msa0882340 | 0.804546 | 2.051250e-49 | -8.615850e-47 |
| Msa0743630 | Msa0882340 | 0.827778 | 1.296316e-54 | -8.615850e-47 |
| Msa0744070 | Msa0882340 | 0.818948 | 1.501283e-52 | -8.615850e-47 |
| Msa0761930 | Msa0882340 | 0.802464 | 5.540859e-49 | -8.615850e-47 |
| Msa0781030 | Msa0882340 | 0.801541 | 8.575385e-49 | -8.615850e-47 |
| Msa0815380 | Msa0882340 | 0.807326 | 5.337889e-50 | -8.615850e-47 |
| Msa0825300 | Msa0882340 | 0.816325 | 5.861685e-52 | -8.615850e-47 |
| Msa0839730 | Msa0882340 | 0.805666 | 1.195917e-49 | -8.615850e-47 |
| Msa0125810 | Msa0882340 | 0.806955 | 6.396940e-50 | -8.615850e-47 |
| Msa0130620 | Msa0882340 | 0.809872 | 1.526672e-50 | -8.615850e-47 |
| Msa0134550 | Msa0882340 | 0.832005 | 1.209775e-55 | -8.615850e-47 |
| Msa0136520 | Msa0882340 | 0.829445 | 5.127203e-55 | -8.615850e-47 |
| Msa0166580 | Msa0882340 | 0.819150 | 1.351006e-52 | -8.615850e-47 |
| Msa0174800 | Msa0882340 | 0.811131 | 8.161154e-51 | -8.615850e-47 |
| Msa0176530 | Msa0882340 | 0.809731 | 1.637219e-50 | -8.615850e-47 |
| Msa0189050 | Msa0882340 | 0.805429 | 1.340772e-49 | -8.615850e-47 |
| Msa0193200 | Msa0882340 | 0.804094 | 2.547211e-49 | -8.615850e-47 |
| Msa0201910 | Msa0882340 | 0.809605 | 1.742408e-50 | -8.615850e-47 |
| Msa0206600 | Msa0882340 | 0.831550 | 1.566873e-55 | -8.615850e-47 |
| Msa0219140 | Msa0882340 | 0.850292 | 1.865766e-60 | -8.615850e-47 |
| Msa0226580 | Msa0882340 | 0.816213 | 6.210789e-52 | -8.615850e-47 |
| Msa0231310 | Msa0882340 | 0.800475 | 1.416366e-48 | -8.615850e-47 |
| Msa0235020 | Msa0882340 | -0.809687 | 1.673087e-50 | -8.615850e-47 |
| Msa0365350 | Msa0882340 | 0.818171 | 2.253399e-52 | -8.615850e-47 |
| Msa0365360 | Msa0882340 | 0.844029 | 9.734789e-59 | -8.615850e-47 |
| Msa0369660 | Msa0882340 | -0.809909 | 1.499106e-50 | -8.615850e-47 |
| Msa0370350 | Msa0882340 | 0.803509 | 3.369648e-49 | -8.615850e-47 |
| Msa0379900 | Msa0882340 | 0.806610 | 7.565671e-50 | -8.615850e-47 |
| Msa0386390 | Msa0882340 | 0.814853 | 1.247059e-51 | -8.615850e-47 |
| Msa0387180 | Msa0882340 | -0.805804 | 1.118639e-49 | -8.615850e-47 |
| Msa0413040 | Msa0882340 | 0.832940 | 7.094656e-56 | -8.615850e-47 |
| Msa0423590 | Msa0882340 | 0.811725 | 6.065284e-51 | -8.615850e-47 |
| Msa0451370 | Msa0882340 | 0.822181 | 2.718135e-53 | -8.615850e-47 |
| Msa0463890 | Msa0882340 | -0.819147 | 1.353109e-52 | -8.615850e-47 |
| Msa0468050 | Msa0882340 | -0.824962 | 6.075170e-54 | -8.615850e-47 |
| Msa0470650 | Msa0882340 | 0.812751 | 3.621417e-51 | -8.615850e-47 |
| Msa0471080 | Msa0882340 | 0.800810 | 1.210138e-48 | -8.615850e-47 |
| Msa0475830 | Msa0882340 | 0.848203 | 7.118541e-60 | -8.615850e-47 |
| Msa0478660 | Msa0882340 | 0.801411 | 9.121105e-49 | -8.615850e-47 |
| Msa0479790 | Msa0882340 | 0.813858 | 2.069087e-51 | -8.615850e-47 |
| Msa0240290 | Msa0882340 | 0.800488 | 1.407607e-48 | -8.615850e-47 |
| Msa0249670 | Msa0882340 | 0.826561 | 2.535958e-54 | -8.615850e-47 |
| Msa0255700 | Msa0882340 | 0.814402 | 1.569141e-51 | -8.615850e-47 |
| Msa0258960 | Msa0882340 | 0.832671 | 8.276726e-56 | -8.615850e-47 |
| Msa0272420 | Msa0882340 | 0.813631 | 2.320832e-51 | -8.615850e-47 |
| Msa0273420 | Msa0882340 | -0.812956 | 3.264873e-51 | -8.615850e-47 |
| Msa0309160 | Msa0882340 | 0.803382 | 3.580685e-49 | -8.615850e-47 |
| Msa0312570 | Msa0882340 | 0.811886 | 5.595260e-51 | -8.615850e-47 |
| Msa0314980 | Msa0882340 | 0.807609 | 4.649097e-50 | -8.615850e-47 |
| Msa0331830 | Msa0882340 | 0.830792 | 2.405668e-55 | -8.615850e-47 |
| Msa0333290 | Msa0882340 | 0.800926 | 1.146121e-48 | -8.615850e-47 |
| Msa0359230 | Msa0882340 | 0.807962 | 3.911130e-50 | -8.615850e-47 |
| Msa0504630 | Msa0882340 | 0.848924 | 4.493323e-60 | -8.615850e-47 |
| Msa0513500 | Msa0882340 | 0.848422 | 6.191603e-60 | -8.615850e-47 |
| Msa0515400 | Msa0882340 | 0.802953 | 4.392978e-49 | -8.615850e-47 |
| Msa0515830 | Msa0882340 | 0.801042 | 1.085323e-48 | -8.615850e-47 |
| Msa0522730 | Msa0882340 | 0.800205 | 1.607642e-48 | -8.615850e-47 |
| Msa0525460 | Msa0882340 | -0.804375 | 2.226715e-49 | -8.615850e-47 |
| Msa0526570 | Msa0882340 | 0.821679 | 3.552579e-53 | -8.615850e-47 |
| Msa0545910 | Msa0882340 | 0.811271 | 7.609217e-51 | -8.615850e-47 |
| Msa0555510 | Msa0882340 | 0.804133 | 2.500002e-49 | -8.615850e-47 |
| Msa0560010 | Msa0882340 | 0.804296 | 2.312630e-49 | -8.615850e-47 |
| Msa0565930 | Msa0882340 | 0.805147 | 1.536140e-49 | -8.615850e-47 |
| Msa0568810 | Msa0882340 | 0.826647 | 2.418230e-54 | -8.615850e-47 |
| Msa0569630 | Msa0882340 | 0.809258 | 2.068223e-50 | -8.615850e-47 |
| Msa0587060 | Msa0882340 | 0.853023 | 3.141760e-61 | -8.615850e-47 |
| Msa0595240 | Msa0882340 | 0.823045 | 1.710901e-53 | -8.615850e-47 |
| Msa0597300 | Msa0882340 | 0.825657 | 4.159890e-54 | -8.615850e-47 |
| Msa0598610 | Msa0882340 | 0.801693 | 7.982731e-49 | -8.615850e-47 |
| Msa0598680 | Msa0882340 | 0.825191 | 5.363187e-54 | -8.615850e-47 |
| Msa0854520 | Msa0882340 | 0.808496 | 3.010435e-50 | -8.615850e-47 |
| Msa0854560 | Msa0882340 | 0.813306 | 2.736332e-51 | -8.615850e-47 |
| Msa0863780 | Msa0882340 | 0.810468 | 1.135355e-50 | -8.615850e-47 |
| Msa0875130 | Msa0882340 | 0.822673 | 2.088253e-53 | -8.615850e-47 |
| Msa0880370 | Msa0882340 | 0.800952 | 1.131834e-48 | -8.615850e-47 |
| Msa0882340 | Msa0883880 | 0.800887 | 1.167221e-48 | -8.615850e-47 |
| Msa0882340 | Msa0887000 | 0.809415 | 1.913464e-50 | -8.615850e-47 |
| Msa0882340 | Msa0933050 | 0.803019 | 4.257463e-49 | -8.615850e-47 |
| Msa0882340 | Msa0947400 | 0.867116 | 1.734897e-65 | -8.615850e-47 |
| Msa0882340 | Msa0967250 | 0.803531 | 3.335293e-49 | -8.615850e-47 |
| Msa0882340 | Msa0976950 | 0.813934 | 1.990657e-51 | -8.615850e-47 |
| Msa0882340 | Msa0998940 | 0.809934 | 1.479994e-50 | -8.615850e-47 |
| Msa0882340 | Msa1008960 | 0.801369 | 9.302198e-49 | -8.615850e-47 |
| Msa0882340 | Msa1015020 | 0.806535 | 7.848298e-50 | -8.615850e-47 |
| Msa0882340 | Msa1025650 | 0.805971 | 1.031403e-49 | -8.615850e-47 |
| Msa0882340 | Msa1031220 | 0.800402 | 1.465868e-48 | -8.615850e-47 |
| Msa0882340 | Msa1033670 | 0.803433 | 3.493896e-49 | -8.615850e-47 |
| Msa0882340 | Msa1034870 | -0.801939 | 7.104632e-49 | -8.615850e-47 |
| Msa0882340 | Msa1041620 | 0.802741 | 4.858974e-49 | -8.615850e-47 |
| Msa0882340 | Msa1050320 | 0.806390 | 8.419149e-50 | -8.615850e-47 |
| Msa0882340 | Msa1061130 | 0.822505 | 2.284810e-53 | -8.615850e-47 |
| Msa0882340 | Msa1081650 | 0.831108 | 2.012157e-55 | -8.615850e-47 |
| Msa0882340 | Msa1096280 | 0.803647 | 3.155188e-49 | -8.615850e-47 |
| Msa0882340 | Msa1098470 | 0.809415 | 1.913323e-50 | -8.615850e-47 |
| Msa0882340 | Msa1101480 | 0.839302 | 1.718246e-57 | -8.615850e-47 |
| Msa0882340 | Msa1113210 | 0.800490 | 1.406356e-48 | -8.615850e-47 |
| Msa0882340 | Msa1117830 | 0.814054 | 1.872821e-51 | -8.615850e-47 |
| Msa0882340 | Msa1151970 | 0.815786 | 7.735493e-52 | -8.615850e-47 |
| Msa0882340 | Msa1161520 | 0.809963 | 1.458866e-50 | -8.615850e-47 |
| Msa0882340 | Msa1182950 | 0.815532 | 8.811195e-52 | -8.615850e-47 |
| Msa0882340 | Msa1198820 | 0.804431 | 2.167503e-49 | -8.615850e-47 |
| Msa0882340 | Msa1199690 | 0.803780 | 2.960093e-49 | -8.615850e-47 |
| Msa0882340 | Msa1203840 | 0.819721 | 1.000828e-52 | -8.615850e-47 |
| Msa0882340 | Msa1208070 | 0.802052 | 6.737494e-49 | -8.615850e-47 |
| Msa0882340 | Msa1211280 | 0.808985 | 2.366290e-50 | -8.615850e-47 |
| Msa0882340 | Msa1223600 | 0.802018 | 6.843987e-49 | -8.615850e-47 |
| Msa0882340 | Msa1229880 | 0.817296 | 3.548753e-52 | -8.615850e-47 |
| Msa0882340 | Msa1230190 | 0.800230 | 1.588782e-48 | -8.615850e-47 |
| Msa0882340 | Msa1252220 | 0.859528 | 3.886746e-63 | -8.615850e-47 |
| Msa0882340 | Msa1257170 | -0.811835 | 5.738105e-51 | -8.615850e-47 |
| Msa0882340 | Msa1258600 | -0.819428 | 1.167339e-52 | -8.615850e-47 |
| Msa0882340 | Msa1267800 | 0.813226 | 2.849652e-51 | -8.615850e-47 |
| Msa0882340 | Msa1279240 | 0.841305 | 5.151671e-58 | -8.615850e-47 |
| Msa0882340 | Msa1285870 | 0.800370 | 1.487758e-48 | -8.615850e-47 |
| Msa0882340 | Msa1293030 | 0.816750 | 4.708083e-52 | -8.615850e-47 |
| Msa0882340 | Msa1298440 | -0.806663 | 7.374552e-50 | -8.615850e-47 |
| Msa0882340 | Msa1310620 | 0.802956 | 4.386115e-49 | -8.615850e-47 |
| Msa0882340 | Msa1319710 | 0.822245 | 2.625588e-53 | -8.615850e-47 |
| Msa0882340 | Msa1330910 | 0.808097 | 3.661225e-50 | -8.615850e-47 |
| Msa0882340 | Msa1337190 | 0.815571 | 8.635694e-52 | -8.615850e-47 |
| Msa0882340 | Msa1361090 | 0.816569 | 5.168290e-52 | -8.615850e-47 |
| Msa0882340 | Msa1368800 | 0.839754 | 1.311179e-57 | -8.615850e-47 |
| Msa0882340 | Msa1386020 | 0.810819 | 9.537199e-51 | -8.615850e-47 |
| Msa0882340 | Msa1388230 | 0.807934 | 3.965985e-50 | -8.615850e-47 |
| Msa0882340 | Msa1390410 | 0.805520 | 1.282932e-49 | -8.615850e-47 |
| Msa0882340 | Msa1391600 | 0.802548 | 5.323817e-49 | -8.615850e-47 |
| Msa0882340 | Msa1395700 | 0.822551 | 2.229640e-53 | -8.615850e-47 |
| Msa0882340 | Msa1397550 | 0.830885 | 2.282463e-55 | -8.615850e-47 |
| Msa0882340 | Msa1398310 | 0.807996 | 3.846620e-50 | -8.615850e-47 |
| Msa0882340 | Msa1400600 | 0.810587 | 1.070445e-50 | -8.615850e-47 |
| Msa0882340 | Msa1400940 | -0.824535 | 7.659967e-54 | -8.615850e-47 |
| Msa0882340 | Msa1413880 | 0.806709 | 7.212608e-50 | -8.615850e-47 |
| Msa0882340 | Msa1432250 | 0.801133 | 1.039468e-48 | -8.615850e-47 |
| Msa0882340 | Msa1438780 | 0.805180 | 1.511688e-49 | -8.615850e-47 |
| Msa0882340 | Msa1450420 | 0.816693 | 4.847500e-52 | -8.615850e-47 |
| Msa0882340 | Msa1451780 | 0.811702 | 6.134896e-51 | -8.615850e-47 |
| Msa0882340 | Msa1466170 | 0.820536 | 6.514278e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882340 | MtrunA17_Chr6g0461911 | 96.016 | 502 | 18 | 2 | 1 | 501 | 1 | 501 | 0.0 | 987 |
| Msa0882340 | MtrunA17_Chr7g0252291 | 77.732 | 485 | 104 | 2 | 17 | 500 | 9 | 490 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0882340 | AT3G19340.1 | 72.016 | 486 | 133 | 3 | 17 | 501 | 3 | 486 | 0.0 | 725 |
| Msa0882340 | AT5G13940.2 | 59.300 | 457 | 174 | 5 | 47 | 498 | 170 | 619 | 0.0 | 556 |
| Msa0882340 | AT5G13940.1 | 59.300 | 457 | 174 | 5 | 47 | 498 | 321 | 770 | 0.0 | 556 |
| Msa0882340 | AT2G46915.1 | 26.639 | 244 | 155 | 7 | 238 | 465 | 443 | 678 | 3.85e-16 | 82.0 |
Find 90 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTAATGTTGCACTTTC+TGG | 0.125709 | 6_1:+31435856 | Msa0882340:CDS |
| TGTTCACAAACTTGAGAAAT+TGG | 0.142121 | 6_1:+31439315 | Msa0882340:CDS |
| ACATGCTCATTGCGCGTTTC+TGG | 0.155771 | 6_1:+31436682 | Msa0882340:CDS |
| ACCATGTCTCTTTGATCTTC+TGG | 0.186217 | 6_1:-31436815 | None:intergenic |
| AAGAGCTTAGGTTTCAAAAT+TGG | 0.215878 | 6_1:-31434697 | None:intergenic |
| ACAACTGATTTGAGGGTTAT+TGG | 0.224454 | 6_1:+31437868 | Msa0882340:CDS |
| ATAGGATCATTGTTGTTTAC+AGG | 0.249850 | 6_1:+31437081 | Msa0882340:CDS |
| TCTATCTATTGAACTTTGTT+AGG | 0.250041 | 6_1:-31439717 | None:intergenic |
| CATCACTGTTAATGAATCTA+AGG | 0.255872 | 6_1:+31435900 | Msa0882340:CDS |
| TCCTATCAAATGTCAGTTCT+TGG | 0.257498 | 6_1:-31437064 | None:intergenic |
| GCTGTTCTTTCTACAGTAAT+TGG | 0.259095 | 6_1:+31437892 | Msa0882340:CDS |
| GATTTCATTCTTTATTCTAA+TGG | 0.264326 | 6_1:+31439096 | Msa0882340:CDS |
| CCACTGAGGAGCTTGTAATT+AGG | 0.272195 | 6_1:+31439577 | Msa0882340:CDS |
| GTAGTTTCATCGACCTTCTT+TGG | 0.284206 | 6_1:-31436850 | None:intergenic |
| TCATATCTTCAAATTGTAAA+AGG | 0.292664 | 6_1:-31435143 | None:intergenic |
| AAACATCCCAATGGCCGATA+TGG | 0.293825 | 6_1:+31437359 | Msa0882340:CDS |
| TTTGAAACCTAAGCTCTTCA+TGG | 0.297527 | 6_1:+31434702 | Msa0882340:CDS |
| ATGTACATTTCAATACTTAA+AGG | 0.300195 | 6_1:+31439664 | Msa0882340:three_prime_UTR |
| GAATGACATCATCACATAAA+TGG | 0.305681 | 6_1:-31438697 | None:intergenic |
| AAAAGAGCAAATGAGATAAT+TGG | 0.324696 | 6_1:+31439549 | Msa0882340:CDS |
| ATTCTTTATTCTAATGGAAC+AGG | 0.334205 | 6_1:+31439102 | Msa0882340:CDS |
| CACTGAGGAGCTTGTAATTA+GGG | 0.365232 | 6_1:+31439578 | Msa0882340:CDS |
| GTCTCCTAAATACCTCAAAA+AGG | 0.369202 | 6_1:-31435475 | None:intergenic |
| TATGAATTAATGAGTTCTTA+AGG | 0.369880 | 6_1:-31434547 | None:intergenic |
| ACACATTGATATCGTCCTAT+TGG | 0.371910 | 6_1:-31439519 | None:intergenic |
| ACATCATCTTGATAAGCTTC+TGG | 0.373960 | 6_1:-31436874 | None:intergenic |
| TGTTATAGTATATAATCTTT+CGG | 0.374868 | 6_1:+31436607 | Msa0882340:intron |
| CGGATCCGCTATTGTTGGAT+TGG | 0.390089 | 6_1:+31437732 | Msa0882340:CDS |
| AACTTATGTGCCCCAGATAC+AGG | 0.399791 | 6_1:-31435392 | None:intergenic |
| ATGGATTGGGTGAAGTTTCT+CGG | 0.405084 | 6_1:+31437712 | Msa0882340:CDS |
| GTTCACAAACTTGAGAAATT+GGG | 0.412461 | 6_1:+31439316 | Msa0882340:CDS |
| TCTTCCAGATTTCTATGATA+AGG | 0.424218 | 6_1:+31436087 | Msa0882340:CDS |
| GTTGGAATTCAGGATCCAAT+AGG | 0.426492 | 6_1:+31439504 | Msa0882340:intron |
| ATTACCTTATCATAGAAATC+TGG | 0.430638 | 6_1:-31436091 | None:intergenic |
| AGCAGCTACAACTGATTTGA+GGG | 0.433861 | 6_1:+31437861 | Msa0882340:CDS |
| ATCAAGGAGTAATGTTTCCT+TGG | 0.439043 | 6_1:-31439605 | None:intergenic |
| CTATTTCCATATCGGCCATT+GGG | 0.441338 | 6_1:-31437365 | None:intergenic |
| TTTACAATTTGAAGATATGA+TGG | 0.443232 | 6_1:+31435146 | Msa0882340:CDS |
| CACAAGAACTATTTCCATAT+CGG | 0.443819 | 6_1:-31437373 | None:intergenic |
| TTTCTCGGATCCGCTATTGT+TGG | 0.450756 | 6_1:+31437727 | Msa0882340:CDS |
| AAGCAGCTACAACTGATTTG+AGG | 0.451016 | 6_1:+31437860 | Msa0882340:CDS |
| ATAATCTTTCGGCGCGGCAT+TGG | 0.451064 | 6_1:+31436618 | Msa0882340:CDS |
| TCCAAGAACTGACATTTGAT+AGG | 0.451313 | 6_1:+31437063 | Msa0882340:CDS |
| TGAATTAAGGAACTGGATCA+AGG | 0.457587 | 6_1:+31439232 | Msa0882340:intron |
| ACAAACAAACACATCATGAA+TGG | 0.467102 | 6_1:-31434435 | None:intergenic |
| TGTATCTGGGGCACATAAGT+TGG | 0.470506 | 6_1:+31435394 | Msa0882340:CDS |
| ACCTAAGCTCTTCATGGCAT+TGG | 0.470712 | 6_1:+31434708 | Msa0882340:CDS |
| GCCAATGCCATGAAGAGCTT+AGG | 0.473739 | 6_1:-31434709 | None:intergenic |
| CTTAGATTCATTAACAGTGA+TGG | 0.474728 | 6_1:-31435899 | None:intergenic |
| ACTATTTCCATATCGGCCAT+TGG | 0.493110 | 6_1:-31437366 | None:intergenic |
| ATTATATGTAAATGTAGTAA+AGG | 0.495823 | 6_1:-31434515 | None:intergenic |
| CTGGATTGACTCCAATGGAT+TGG | 0.499178 | 6_1:+31437698 | Msa0882340:CDS |
| TGGATTGACTCCAATGGATT+GGG | 0.499880 | 6_1:+31437699 | Msa0882340:CDS |
| AAATCTGGAAGATTATTAAA+CGG | 0.500190 | 6_1:-31436076 | None:intergenic |
| TTAGATTCATTAACAGTGAT+GGG | 0.504126 | 6_1:-31435898 | None:intergenic |
| CAATCCATTGGAGTCAATCC+AGG | 0.515695 | 6_1:-31437697 | None:intergenic |
| TAGAAATAACAAGACCTCAA+TGG | 0.516913 | 6_1:-31436925 | None:intergenic |
| AGAAACTTCACCCAATCCAT+TGG | 0.517634 | 6_1:-31437709 | None:intergenic |
| GAAACTTGAATGAAATAAAG+TGG | 0.518125 | 6_1:-31434486 | None:intergenic |
| CAGCCAGAAAAGAAAAGTCC+TGG | 0.519899 | 6_1:+31437679 | Msa0882340:intron |
| CAAACACATCATGAATGGAA+TGG | 0.521976 | 6_1:-31434430 | None:intergenic |
| TCCGATTCAAAACCCGAAAG+AGG | 0.526782 | 6_1:+31437315 | Msa0882340:CDS |
| GAAATTGGGAATTGTCACTA+AGG | 0.538207 | 6_1:+31439330 | Msa0882340:CDS |
| CATATCTATTAAGAACGCTC+AGG | 0.541611 | 6_1:+31436706 | Msa0882340:CDS |
| ATAGGACGATATCAATGTGT+TGG | 0.547411 | 6_1:+31439522 | Msa0882340:CDS |
| TCATAAAACAACAAGCATCA+AGG | 0.565833 | 6_1:-31439621 | None:intergenic |
| AAGTCCTGGATTGACTCCAA+TGG | 0.567758 | 6_1:+31437693 | Msa0882340:CDS |
| ACATTTCAATACTTAAAGGC+AGG | 0.578863 | 6_1:+31439668 | Msa0882340:three_prime_UTR |
| TAGAGTATACAATTCGAGCT+TGG | 0.586855 | 6_1:+31435118 | Msa0882340:CDS |
| TTCTTTATTCTAATGGAACA+GGG | 0.587419 | 6_1:+31439103 | Msa0882340:CDS |
| GAATTAAGGAACTGGATCAA+GGG | 0.591418 | 6_1:+31439233 | Msa0882340:intron |
| GTCTTGAAAATATGCCATTG+AGG | 0.595428 | 6_1:+31436911 | Msa0882340:CDS |
| TAAGAAATTAGATCCAAAGA+AGG | 0.598096 | 6_1:+31436837 | Msa0882340:CDS |
| ATCAAGATGATGTATATGAA+CGG | 0.600804 | 6_1:+31436884 | Msa0882340:CDS |
| ACAGGGAAAAGCTACAAGAC+AGG | 0.616213 | 6_1:+31439120 | Msa0882340:CDS |
| ATGACAAACAACTAGACAGT+GGG | 0.622837 | 6_1:+31438660 | Msa0882340:CDS |
| AAACAACTAGACAGTGGGAA+GGG | 0.631126 | 6_1:+31438665 | Msa0882340:CDS |
| CCTAATTACAAGCTCCTCAG+TGG | 0.637107 | 6_1:-31439577 | None:intergenic |
| AATTACAAGCTCCTCAGTGG+TGG | 0.644878 | 6_1:-31439574 | None:intergenic |
| GCACATAAGTTGGAACAACA+AGG | 0.645564 | 6_1:+31435404 | Msa0882340:CDS |
| GGAACTGGATCAAGGGTGTG+AGG | 0.652590 | 6_1:+31439240 | Msa0882340:intron |
| TCCAGAAGATCAAAGAGACA+TGG | 0.657089 | 6_1:+31436814 | Msa0882340:CDS |
| ACTAACCAATCCAACAATAG+CGG | 0.662232 | 6_1:-31437737 | None:intergenic |
| CAAACAACTAGACAGTGGGA+AGG | 0.668431 | 6_1:+31438664 | Msa0882340:CDS |
| CATTGGAATTGATCAAACGA+CGG | 0.669630 | 6_1:+31436635 | Msa0882340:CDS |
| TATGACAAACAACTAGACAG+TGG | 0.676974 | 6_1:+31438659 | Msa0882340:CDS |
| CTTGTAATTAGGGCAAACCA+AGG | 0.680941 | 6_1:+31439588 | Msa0882340:CDS |
| GCATTTCAGAAACATCCCAA+TGG | 0.685860 | 6_1:+31437350 | Msa0882340:CDS |
| TAGTATATAATCTTTCGGCG+CGG | 0.736363 | 6_1:+31436612 | Msa0882340:intron |
| GATAATTGGTGCCACCACTG+AGG | 0.746391 | 6_1:+31439563 | Msa0882340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTCATATTTCAATTTT+TGG | + | chr6_1:31434560-31434579 | Msa0882340:intron | 10.0% |
| !!! | CAAAGATAATAATTTTATTT+TGG | - | chr6_1:31436207-31436226 | None:intergenic | 10.0% |
| !! | TTAATTAATCTATCTTTATA+AGG | + | chr6_1:31437230-31437249 | Msa0882340:intron | 10.0% |
| !! | ATTATATGTAAATGTAGTAA+AGG | - | chr6_1:31434518-31434537 | None:intergenic | 15.0% |
| !! | CTGGTTTATATATTATATAT+TGG | - | chr6_1:31434989-31435008 | None:intergenic | 15.0% |
| !! | AGTCAATATATATAATCATA+AGG | + | chr6_1:31435944-31435963 | Msa0882340:intron | 15.0% |
| !! | TGTTATAGTATATAATCTTT+CGG | + | chr6_1:31436607-31436626 | Msa0882340:intron | 15.0% |
| !! | ATATCATTTAAAGAATTGTT+CGG | + | chr6_1:31437105-31437124 | Msa0882340:intron | 15.0% |
| !! | TTTATTACCTAATTATAACA+TGG | + | chr6_1:31437434-31437453 | Msa0882340:intron | 15.0% |
| !!! | ATGTTTAACTTTTTCTTAAT+AGG | + | chr6_1:31437816-31437835 | Msa0882340:intron | 15.0% |
| !! | AATTAATAATGCAAACAATA+TGG | - | chr6_1:31438509-31438528 | None:intergenic | 15.0% |
| !!! | AATTAGTGATTAGATTTTTT+TGG | + | chr6_1:31438991-31439010 | Msa0882340:intron | 15.0% |
| !! | TAAGCTATATATTTGAATTA+AGG | + | chr6_1:31439219-31439238 | Msa0882340:intron | 15.0% |
| !! | TATGAATTAATGAGTTCTTA+AGG | - | chr6_1:31434550-31434569 | None:intergenic | 20.0% |
| !! | ATATAAGTAATGATTTAGAG+AGG | + | chr6_1:31434835-31434854 | Msa0882340:intron | 20.0% |
| !!! | CAGATACATATAATTTTGTT+TGG | + | chr6_1:31434915-31434934 | Msa0882340:intron | 20.0% |
| !! | TCATATCTTCAAATTGTAAA+AGG | - | chr6_1:31435146-31435165 | None:intergenic | 20.0% |
| !! | TTTACAATTTGAAGATATGA+TGG | + | chr6_1:31435146-31435165 | Msa0882340:CDS | 20.0% |
| !! | GTTAAGATTATTTGATTCTT+TGG | + | chr6_1:31435790-31435809 | Msa0882340:intron | 20.0% |
| !! | AAATCTGGAAGATTATTAAA+CGG | - | chr6_1:31436079-31436098 | None:intergenic | 20.0% |
| !!! | GATTAATTGTTCTTTGTTTT+AGG | + | chr6_1:31436163-31436182 | Msa0882340:intron | 20.0% |
| !!! | TTATTTTATAATGGAGAAAG+TGG | + | chr6_1:31436659-31436678 | Msa0882340:CDS | 20.0% |
| !! | TATTACGCTAAATTATTAGT+TGG | + | chr6_1:31437264-31437283 | Msa0882340:intron | 20.0% |
| !! | ATTTCAGTTATAAAACATCT+TGG | + | chr6_1:31437399-31437418 | Msa0882340:intron | 20.0% |
| !!! | TTTAGAACCATGTTATAATT+AGG | - | chr6_1:31437444-31437463 | None:intergenic | 20.0% |
| !!! | TCACAAAATAATGGTTTTAA+AGG | - | chr6_1:31437578-31437597 | None:intergenic | 20.0% |
| !!! | ATGATTACTAATTGTTTTGT+TGG | - | chr6_1:31438566-31438585 | None:intergenic | 20.0% |
| !!! | TCTTAATTAACTTGCTATAT+AGG | + | chr6_1:31438588-31438607 | Msa0882340:intron | 20.0% |
| !! | TAATAGAACAAATGATATGA+AGG | - | chr6_1:31438745-31438764 | None:intergenic | 20.0% |
| !!! | TGTATTTTCTCAAACTATTA+CGG | - | chr6_1:31438857-31438876 | None:intergenic | 20.0% |
| !!! | GCACATTATGAATTTTAAAT+TGG | - | chr6_1:31439060-31439079 | None:intergenic | 20.0% |
| !!! | ATTTAAAATTCATAATGTGC+AGG | + | chr6_1:31439060-31439079 | Msa0882340:intron | 20.0% |
| !! | GATTTCATTCTTTATTCTAA+TGG | + | chr6_1:31439096-31439115 | Msa0882340:CDS | 20.0% |
| !! | CAACTAATAAATAAAATGCA+AGG | - | chr6_1:31439172-31439191 | None:intergenic | 20.0% |
| !! | ATATATTTGAATTAAGGAAC+TGG | + | chr6_1:31439225-31439244 | Msa0882340:intron | 20.0% |
| !! | TAATGAACACTTTATTAGAA+GGG | - | chr6_1:31439367-31439386 | None:intergenic | 20.0% |
| !! | ATAATGAACACTTTATTAGA+AGG | - | chr6_1:31439368-31439387 | None:intergenic | 20.0% |
| !! | ATGTACATTTCAATACTTAA+AGG | + | chr6_1:31439664-31439683 | Msa0882340:three_prime_UTR | 20.0% |
| ! | GAAACTTGAATGAAATAAAG+TGG | - | chr6_1:31434489-31434508 | None:intergenic | 25.0% |
| ! | AGAATCCTACAAAAAAAGTT+TGG | + | chr6_1:31434621-31434640 | Msa0882340:CDS | 25.0% |
| !!! | TTCTTCCAAACTTTTTTTGT+AGG | - | chr6_1:31434629-31434648 | None:intergenic | 25.0% |
| !! | AAATCTAATGTCTAAGATAG+AGG | - | chr6_1:31434771-31434790 | None:intergenic | 25.0% |
| ! | TTACTTATTCTACTTGTTTC+TGG | - | chr6_1:31435008-31435027 | None:intergenic | 25.0% |
| ! | TACATGATATAAGTTGTGAT+TGG | - | chr6_1:31435555-31435574 | None:intergenic | 25.0% |
| !! | ATATCATGTGTGACTATTTT+TGG | + | chr6_1:31435590-31435609 | Msa0882340:intron | 25.0% |
| !! | ATTAGACTTTACTTACCTTT+TGG | - | chr6_1:31435667-31435686 | None:intergenic | 25.0% |
| ! | TTAGATTCATTAACAGTGAT+GGG | - | chr6_1:31435901-31435920 | None:intergenic | 25.0% |
| ! | ATTACCTTATCATAGAAATC+TGG | - | chr6_1:31436094-31436113 | None:intergenic | 25.0% |
| ! | ATCTGATATTAAGAATGCTA+AGG | + | chr6_1:31436121-31436140 | Msa0882340:intron | 25.0% |
| !!! | TAAGAATGCTAAGGATTTTT+TGG | + | chr6_1:31436130-31436149 | Msa0882340:intron | 25.0% |
| ! | AAAGAACAATTAATCAACAC+TGG | - | chr6_1:31436158-31436177 | None:intergenic | 25.0% |
| ! | AAAGATCAGAACAATCAAAT+CGG | + | chr6_1:31436231-31436250 | Msa0882340:intron | 25.0% |
| !!! | AACGACGGATTATTTTATAA+TGG | + | chr6_1:31436650-31436669 | Msa0882340:CDS | 25.0% |
| ! | ACTGAAATTAGTATATCCAA+TGG | + | chr6_1:31436766-31436785 | Msa0882340:intron | 25.0% |
| ! | TAAGAAATTAGATCCAAAGA+AGG | + | chr6_1:31436837-31436856 | Msa0882340:CDS | 25.0% |
| ! | ATCAAGATGATGTATATGAA+CGG | + | chr6_1:31436884-31436903 | Msa0882340:CDS | 25.0% |
| ! | TTGTCACTAATGAGATTATT+CGG | + | chr6_1:31436999-31437018 | Msa0882340:intron | 25.0% |
| !! | TGATGATGATTGAAAAAACA+AGG | - | chr6_1:31437170-31437189 | None:intergenic | 25.0% |
| ! | TTTCTCATTCACACATTAAT+TGG | - | chr6_1:31437209-31437228 | None:intergenic | 25.0% |
| !!! | TATAACATGGTTCTAAATTG+TGG | + | chr6_1:31437447-31437466 | Msa0882340:intron | 25.0% |
| ! | TTGTTCAAAAATTTCGATTG+CGG | - | chr6_1:31437601-31437620 | None:intergenic | 25.0% |
| ! | AAACAATATGGAAGTTACAT+GGG | - | chr6_1:31438497-31438516 | None:intergenic | 25.0% |
| ! | GCTAGTAATGTTCTTTAATA+CGG | + | chr6_1:31438771-31438790 | Msa0882340:intron | 25.0% |
| ! | GGAATTGTTCTTTATATGTT+TGG | - | chr6_1:31439039-31439058 | None:intergenic | 25.0% |
| ! | ATTCTTTATTCTAATGGAAC+AGG | + | chr6_1:31439102-31439121 | Msa0882340:CDS | 25.0% |
| ! | TTCTTTATTCTAATGGAACA+GGG | + | chr6_1:31439103-31439122 | Msa0882340:CDS | 25.0% |
| ! | AAAAGAGCAAATGAGATAAT+TGG | + | chr6_1:31439549-31439568 | Msa0882340:CDS | 25.0% |
| ! | TCTATCTATTGAACTTTGTT+AGG | - | chr6_1:31439720-31439739 | None:intergenic | 25.0% |
| !!! | TGATCTGTTTTTCTTATACT+TGG | - | chr6_1:31439777-31439796 | None:intergenic | 25.0% |
| ACAAACAAACACATCATGAA+TGG | - | chr6_1:31434438-31434457 | None:intergenic | 30.0% | |
| GAACAAAGCTGAAAGAAAAA+TGG | + | chr6_1:31434582-31434601 | Msa0882340:intron | 30.0% | |
| AAAAATGGCACATTCATGTT+TGG | + | chr6_1:31434597-31434616 | Msa0882340:exon | 30.0% | |
| AAGAGCTTAGGTTTCAAAAT+TGG | - | chr6_1:31434700-31434719 | None:intergenic | 30.0% | |
| CTAAGATAGAGGAAAAAAGA+AGG | - | chr6_1:31434760-31434779 | None:intergenic | 30.0% | |
| TTACTTATATCGACGTATCA+CGG | - | chr6_1:31434825-31434844 | None:intergenic | 30.0% | |
| ! | TTTCTTGACTTACCTTTTTG+AGG | + | chr6_1:31435463-31435482 | Msa0882340:CDS | 30.0% |
| !!! | CTTACCTTTTTGAGGTATTT+AGG | + | chr6_1:31435471-31435490 | Msa0882340:intron | 30.0% |
| AATTAAGAATTGTTCCACCT+AGG | + | chr6_1:31435684-31435703 | Msa0882340:intron | 30.0% | |
| ! | CCTTTAAAGACGAATTATTC+AGG | - | chr6_1:31435727-31435746 | None:intergenic | 30.0% |
| CCTGAATAATTCGTCTTTAA+AGG | + | chr6_1:31435724-31435743 | Msa0882340:intron | 30.0% | |
| GATTATTTGATTCTTTGGTC+AGG | + | chr6_1:31435795-31435814 | Msa0882340:intron | 30.0% | |
| GAAATTAATGTTGCACTTTC+TGG | + | chr6_1:31435856-31435875 | Msa0882340:CDS | 30.0% | |
| CTTAGATTCATTAACAGTGA+TGG | - | chr6_1:31435902-31435921 | None:intergenic | 30.0% | |
| CATCACTGTTAATGAATCTA+AGG | + | chr6_1:31435900-31435919 | Msa0882340:CDS | 30.0% | |
| TCTTCCAGATTTCTATGATA+AGG | + | chr6_1:31436087-31436106 | Msa0882340:CDS | 30.0% | |
| ! | CTAGAAAAGTATAGAGCAAT+AGG | + | chr6_1:31436395-31436414 | Msa0882340:intron | 30.0% |
| TTTGATCCTTGATATTAGAG+TGG | + | chr6_1:31436447-31436466 | Msa0882340:intron | 30.0% | |
| GAAATCATGGTATACATAGA+AGG | - | chr6_1:31436562-31436581 | None:intergenic | 30.0% | |
| TCACTAATTGTCAGAAATCA+TGG | - | chr6_1:31436575-31436594 | None:intergenic | 30.0% | |
| TAGAAATAACAAGACCTCAA+TGG | - | chr6_1:31436928-31436947 | None:intergenic | 30.0% | |
| !! | ATAGGATCATTGTTGTTTAC+AGG | + | chr6_1:31437081-31437100 | Msa0882340:CDS | 30.0% |
| CATTCACACATTAATTGGTA+TGG | - | chr6_1:31437204-31437223 | None:intergenic | 30.0% | |
| CTATCTTTATAAGGTTAAGC+TGG | + | chr6_1:31437239-31437258 | Msa0882340:intron | 30.0% | |
| TTGGTCATTATTGTTTGCAT+AGG | + | chr6_1:31437283-31437302 | Msa0882340:intron | 30.0% | |
| TTCACAAAAATTCCTCTTTC+GGG | - | chr6_1:31437330-31437349 | None:intergenic | 30.0% | |
| CTTCACAAAAATTCCTCTTT+CGG | - | chr6_1:31437331-31437350 | None:intergenic | 30.0% | |
| CACAAGAACTATTTCCATAT+CGG | - | chr6_1:31437376-31437395 | None:intergenic | 30.0% | |
| TCACTTATTGTCATTCATGA+GGG | - | chr6_1:31437639-31437658 | None:intergenic | 30.0% | |
| ATCACTTATTGTCATTCATG+AGG | - | chr6_1:31437640-31437659 | None:intergenic | 30.0% | |
| ATTAAGCACTTGAGAGAATT+CGG | + | chr6_1:31438020-31438039 | Msa0882340:intron | 30.0% | |
| ! | GATGAAGTATTTATATCGCT+TGG | - | chr6_1:31438225-31438244 | None:intergenic | 30.0% |
| CTATTTATGCGGCAATTAAT+TGG | - | chr6_1:31438423-31438442 | None:intergenic | 30.0% | |
| TGCTCAATAGACTATTTATG+CGG | - | chr6_1:31438434-31438453 | None:intergenic | 30.0% | |
| CAAACAATATGGAAGTTACA+TGG | - | chr6_1:31438498-31438517 | None:intergenic | 30.0% | |
| GAATGACATCATCACATAAA+TGG | - | chr6_1:31438700-31438719 | None:intergenic | 30.0% | |
| TGTTCACAAACTTGAGAAAT+TGG | + | chr6_1:31439315-31439334 | Msa0882340:CDS | 30.0% | |
| GTTCACAAACTTGAGAAATT+GGG | + | chr6_1:31439316-31439335 | Msa0882340:CDS | 30.0% | |
| ! | TAATGACTTGAAGCTTTTGT+TGG | + | chr6_1:31439486-31439505 | Msa0882340:intron | 30.0% |
| TCATAAAACAACAAGCATCA+AGG | - | chr6_1:31439624-31439643 | None:intergenic | 30.0% | |
| ACATTTCAATACTTAAAGGC+AGG | + | chr6_1:31439668-31439687 | Msa0882340:three_prime_UTR | 30.0% | |
| GCAGGAACAAAAAATTTCAA+GGG | + | chr6_1:31439686-31439705 | Msa0882340:three_prime_UTR | 30.0% | |
| CAAACACATCATGAATGGAA+TGG | - | chr6_1:31434433-31434452 | None:intergenic | 35.0% | |
| ! | TTTGAAACCTAAGCTCTTCA+TGG | + | chr6_1:31434702-31434721 | Msa0882340:CDS | 35.0% |
| TAGAGTATACAATTCGAGCT+TGG | + | chr6_1:31435118-31435137 | Msa0882340:CDS | 35.0% | |
| AGAGAGAGAGAGAATATGTA+TGG | + | chr6_1:31435315-31435334 | Msa0882340:intron | 35.0% | |
| !! | CACTTTTTGATCCTGTATCT+GGG | + | chr6_1:31435381-31435400 | Msa0882340:CDS | 35.0% |
| ! | ACTTTTTGATCCTGTATCTG+GGG | + | chr6_1:31435382-31435401 | Msa0882340:CDS | 35.0% |
| GTCTCCTAAATACCTCAAAA+AGG | - | chr6_1:31435478-31435497 | None:intergenic | 35.0% | |
| TAAAGGTCCATAAAGCAAGT+TGG | + | chr6_1:31435741-31435760 | Msa0882340:intron | 35.0% | |
| ! | CATTGATCCAACTTGCTTTA+TGG | - | chr6_1:31435751-31435770 | None:intergenic | 35.0% |
| ! | CATAAAGCAAGTTGGATCAA+TGG | + | chr6_1:31435749-31435768 | Msa0882340:intron | 35.0% |
| ATCAGAACAATCAAATCGGT+CGG | + | chr6_1:31436235-31436254 | Msa0882340:intron | 35.0% | |
| TCTTAATCATCTCGTTCTCA+AGG | - | chr6_1:31436349-31436368 | None:intergenic | 35.0% | |
| GAGTTTCCACTCTAATATCA+AGG | - | chr6_1:31436456-31436475 | None:intergenic | 35.0% | |
| TAGTATATAATCTTTCGGCG+CGG | + | chr6_1:31436612-31436631 | Msa0882340:intron | 35.0% | |
| CATTGGAATTGATCAAACGA+CGG | + | chr6_1:31436635-31436654 | Msa0882340:CDS | 35.0% | |
| CATATCTATTAAGAACGCTC+AGG | + | chr6_1:31436706-31436725 | Msa0882340:CDS | 35.0% | |
| ATCCAATGGTTCTTTCAGAT+TGG | + | chr6_1:31436780-31436799 | Msa0882340:intron | 35.0% | |
| ACATCATCTTGATAAGCTTC+TGG | - | chr6_1:31436877-31436896 | None:intergenic | 35.0% | |
| GTCTTGAAAATATGCCATTG+AGG | + | chr6_1:31436911-31436930 | Msa0882340:CDS | 35.0% | |
| TCCAAGAACTGACATTTGAT+AGG | + | chr6_1:31437063-31437082 | Msa0882340:CDS | 35.0% | |
| TCCTATCAAATGTCAGTTCT+TGG | - | chr6_1:31437067-31437086 | None:intergenic | 35.0% | |
| CGCTGTAAACTTTGATACTT+CGG | + | chr6_1:31437491-31437510 | Msa0882340:intron | 35.0% | |
| ! | AATCCAGGACTTTTCTTTTC+TGG | - | chr6_1:31437685-31437704 | None:intergenic | 35.0% |
| ACTAACCAATCCAACAATAG+CGG | - | chr6_1:31437740-31437759 | None:intergenic | 35.0% | |
| !! | ACAACTGATTTGAGGGTTAT+TGG | + | chr6_1:31437868-31437887 | Msa0882340:CDS | 35.0% |
| GCTGTTCTTTCTACAGTAAT+TGG | + | chr6_1:31437892-31437911 | Msa0882340:CDS | 35.0% | |
| GATTTCAAACTTGGTATGTC+TGG | + | chr6_1:31438121-31438140 | Msa0882340:intron | 35.0% | |
| AATCTATGCATTAACGCAGT+AGG | - | chr6_1:31438201-31438220 | None:intergenic | 35.0% | |
| AAATTCTGCATCGAGTAGTA+TGG | - | chr6_1:31438255-31438274 | None:intergenic | 35.0% | |
| ACTTACGAAGGGATTGATAA+AGG | - | chr6_1:31438366-31438385 | None:intergenic | 35.0% | |
| TCGAAATGACTACTTACGAA+GGG | - | chr6_1:31438377-31438396 | None:intergenic | 35.0% | |
| CATCTCATACTACTCAATGT+GGG | + | chr6_1:31438452-31438471 | Msa0882340:intron | 35.0% | |
| GAAGTTACATGGGTATTATG+GGG | - | chr6_1:31438487-31438506 | None:intergenic | 35.0% | |
| GGAAGTTACATGGGTATTAT+GGG | - | chr6_1:31438488-31438507 | None:intergenic | 35.0% | |
| TGGAAGTTACATGGGTATTA+TGG | - | chr6_1:31438489-31438508 | None:intergenic | 35.0% | |
| TCAACAAAACATGTTGCATG+TGG | - | chr6_1:31438533-31438552 | None:intergenic | 35.0% | |
| TATGACAAACAACTAGACAG+TGG | + | chr6_1:31438659-31438678 | Msa0882340:CDS | 35.0% | |
| ATGACAAACAACTAGACAGT+GGG | + | chr6_1:31438660-31438679 | Msa0882340:CDS | 35.0% | |
| ATCATACATGACATTGACAC+TGG | + | chr6_1:31438820-31438839 | Msa0882340:intron | 35.0% | |
| TGAATTAAGGAACTGGATCA+AGG | + | chr6_1:31439232-31439251 | Msa0882340:intron | 35.0% | |
| GAATTAAGGAACTGGATCAA+GGG | + | chr6_1:31439233-31439252 | Msa0882340:intron | 35.0% | |
| GAAATTGGGAATTGTCACTA+AGG | + | chr6_1:31439330-31439349 | Msa0882340:CDS | 35.0% | |
| ! | TGAAGCTTTTGTTGGAATTC+AGG | + | chr6_1:31439494-31439513 | Msa0882340:intron | 35.0% |
| ACACATTGATATCGTCCTAT+TGG | - | chr6_1:31439522-31439541 | None:intergenic | 35.0% | |
| ATAGGACGATATCAATGTGT+TGG | + | chr6_1:31439522-31439541 | Msa0882340:CDS | 35.0% | |
| ATCAAGGAGTAATGTTTCCT+TGG | - | chr6_1:31439608-31439627 | None:intergenic | 35.0% | |
| GGCAGGAACAAAAAATTTCA+AGG | + | chr6_1:31439685-31439704 | Msa0882340:three_prime_UTR | 35.0% | |
| !! | GCACTTTTTGATCCTGTATC+TGG | + | chr6_1:31435380-31435399 | Msa0882340:CDS | 40.0% |
| ! | GCACATAAGTTGGAACAACA+AGG | + | chr6_1:31435404-31435423 | Msa0882340:CDS | 40.0% |
| AGAACCTAAGTTCGATTCCT+AGG | - | chr6_1:31435704-31435723 | None:intergenic | 40.0% | |
| CTCCAATCTGAAAGAACCAT+TGG | - | chr6_1:31436785-31436804 | None:intergenic | 40.0% | |
| TCCAGAAGATCAAAGAGACA+TGG | + | chr6_1:31436814-31436833 | Msa0882340:CDS | 40.0% | |
| ACCATGTCTCTTTGATCTTC+TGG | - | chr6_1:31436818-31436837 | None:intergenic | 40.0% | |
| GTAGTTTCATCGACCTTCTT+TGG | - | chr6_1:31436853-31436872 | None:intergenic | 40.0% | |
| ! | TTCGGTGCAAATTTCAGTTC+TGG | + | chr6_1:31437017-31437036 | Msa0882340:intron | 40.0% |
| !!! | TCCTCTTTCGGGTTTTGAAT+CGG | - | chr6_1:31437319-31437338 | None:intergenic | 40.0% |
| GCATTTCAGAAACATCCCAA+TGG | + | chr6_1:31437350-31437369 | Msa0882340:CDS | 40.0% | |
| CTATTTCCATATCGGCCATT+GGG | - | chr6_1:31437368-31437387 | None:intergenic | 40.0% | |
| ACTATTTCCATATCGGCCAT+TGG | - | chr6_1:31437369-31437388 | None:intergenic | 40.0% | |
| CAGCGTAATTGAGATTGTGA+CGG | - | chr6_1:31437476-31437495 | None:intergenic | 40.0% | |
| CGGCAAAATACAGACAAATC+AGG | + | chr6_1:31437511-31437530 | Msa0882340:intron | 40.0% | |
| ACAGACAAATCAGGTAGATG+TGG | + | chr6_1:31437520-31437539 | Msa0882340:intron | 40.0% | |
| CGATTGCGGTCACAAAATAA+TGG | - | chr6_1:31437587-31437606 | None:intergenic | 40.0% | |
| ! | TGGATTGACTCCAATGGATT+GGG | + | chr6_1:31437699-31437718 | Msa0882340:CDS | 40.0% |
| AGAAACTTCACCCAATCCAT+TGG | - | chr6_1:31437712-31437731 | None:intergenic | 40.0% | |
| !! | ATGGATTGGGTGAAGTTTCT+CGG | + | chr6_1:31437712-31437731 | Msa0882340:CDS | 40.0% |
| !! | AAGCAGCTACAACTGATTTG+AGG | + | chr6_1:31437860-31437879 | Msa0882340:CDS | 40.0% |
| !! | AGCAGCTACAACTGATTTGA+GGG | + | chr6_1:31437861-31437880 | Msa0882340:CDS | 40.0% |
| TTGATCGAGATCAGACAGTT+CGG | + | chr6_1:31438099-31438118 | Msa0882340:intron | 40.0% | |
| GACAGTTCGGATTTCAAACT+TGG | + | chr6_1:31438112-31438131 | Msa0882340:intron | 40.0% | |
| GAATGCTATGATAGGGAGTT+GGG | - | chr6_1:31438293-31438312 | None:intergenic | 40.0% | |
| CAGAGACGAATGCTATGATA+GGG | - | chr6_1:31438300-31438319 | None:intergenic | 40.0% | |
| TCAGAGACGAATGCTATGAT+AGG | - | chr6_1:31438301-31438320 | None:intergenic | 40.0% | |
| CTCGAAATGACTACTTACGA+AGG | - | chr6_1:31438378-31438397 | None:intergenic | 40.0% | |
| GCATCTCATACTACTCAATG+TGG | + | chr6_1:31438451-31438470 | Msa0882340:intron | 40.0% | |
| ATACTACTCAATGTGGGACT+TGG | + | chr6_1:31438458-31438477 | Msa0882340:intron | 40.0% | |
| AAACAACTAGACAGTGGGAA+GGG | + | chr6_1:31438665-31438684 | Msa0882340:CDS | 40.0% | |
| TCTGATTGAATGCGTGTGTT+TGG | - | chr6_1:31438924-31438943 | None:intergenic | 40.0% | |
| GTTGGAATTCAGGATCCAAT+AGG | + | chr6_1:31439504-31439523 | Msa0882340:intron | 40.0% | |
| CACTGAGGAGCTTGTAATTA+GGG | + | chr6_1:31439578-31439597 | Msa0882340:CDS | 40.0% | |
| CTTGTAATTAGGGCAAACCA+AGG | + | chr6_1:31439588-31439607 | Msa0882340:CDS | 40.0% | |
| ACCTAAGCTCTTCATGGCAT+TGG | + | chr6_1:31434708-31434727 | Msa0882340:CDS | 45.0% | |
| ! | ACGTATCACGGTTTTCGTAG+AGG | - | chr6_1:31434813-31434832 | None:intergenic | 45.0% |
| AACTTATGTGCCCCAGATAC+AGG | - | chr6_1:31435395-31435414 | None:intergenic | 45.0% | |
| ! | TGTATCTGGGGCACATAAGT+TGG | + | chr6_1:31435394-31435413 | Msa0882340:CDS | 45.0% |
| !!! | TATTTTTGGCGTTGACCCTC+CGG | + | chr6_1:31435604-31435623 | Msa0882340:intron | 45.0% |
| TCCACCTAGGAATCGAACTT+AGG | + | chr6_1:31435697-31435716 | Msa0882340:intron | 45.0% | |
| ACCTAAGTTCGATTCCTAGG+TGG | - | chr6_1:31435701-31435720 | None:intergenic | 45.0% | |
| !!! | TTCGGGTTTTGAATCGGAAC+TGG | - | chr6_1:31437313-31437332 | None:intergenic | 45.0% |
| TCCGATTCAAAACCCGAAAG+AGG | + | chr6_1:31437315-31437334 | Msa0882340:CDS | 45.0% | |
| AAACATCCCAATGGCCGATA+TGG | + | chr6_1:31437359-31437378 | Msa0882340:CDS | 45.0% | |
| CAGCCAGAAAAGAAAAGTCC+TGG | + | chr6_1:31437679-31437698 | Msa0882340:intron | 45.0% | |
| ! | AAGTCCTGGATTGACTCCAA+TGG | + | chr6_1:31437693-31437712 | Msa0882340:CDS | 45.0% |
| CAATCCATTGGAGTCAATCC+AGG | - | chr6_1:31437700-31437719 | None:intergenic | 45.0% | |
| ! | CTGGATTGACTCCAATGGAT+TGG | + | chr6_1:31437698-31437717 | Msa0882340:CDS | 45.0% |
| TTTCTCGGATCCGCTATTGT+TGG | + | chr6_1:31437727-31437746 | Msa0882340:CDS | 45.0% | |
| CATTAACGCAGTAGGCACAT+TGG | - | chr6_1:31438193-31438212 | None:intergenic | 45.0% | |
| ! | TGATAGGGAGTTGGGTATTG+CGG | - | chr6_1:31438285-31438304 | None:intergenic | 45.0% |
| CGAATGCTATGATAGGGAGT+TGG | - | chr6_1:31438294-31438313 | None:intergenic | 45.0% | |
| GCACTCTGCAATGCGTTAAT+CGG | + | chr6_1:31438340-31438359 | Msa0882340:intron | 45.0% | |
| CAAACAACTAGACAGTGGGA+AGG | + | chr6_1:31438664-31438683 | Msa0882340:CDS | 45.0% | |
| ACAGGGAAAAGCTACAAGAC+AGG | + | chr6_1:31439120-31439139 | Msa0882340:CDS | 45.0% | |
| AATTACAAGCTCCTCAGTGG+TGG | - | chr6_1:31439577-31439596 | None:intergenic | 45.0% | |
| CCTAATTACAAGCTCCTCAG+TGG | - | chr6_1:31439580-31439599 | None:intergenic | 45.0% | |
| CCACTGAGGAGCTTGTAATT+AGG | + | chr6_1:31439577-31439596 | Msa0882340:CDS | 45.0% | |
| !! | TATATATATATATATGAAAA+TGG | - | chr6_1:31435194-31435213 | None:intergenic | 5.0% |
| GCCAATGCCATGAAGAGCTT+AGG | - | chr6_1:31434712-31434731 | None:intergenic | 50.0% | |
| !! | CACGGTTTTCGTAGAGGTGT+CGG | - | chr6_1:31434807-31434826 | None:intergenic | 50.0% |
| ! | CTTTTCCCCTTAGAACCGGA+GGG | - | chr6_1:31435622-31435641 | None:intergenic | 50.0% |
| !! | CTCCGGTTCTAAGGGGAAAA+GGG | + | chr6_1:31435621-31435640 | Msa0882340:intron | 50.0% |
| ! | AGCCCTTTTCCCCTTAGAAC+CGG | - | chr6_1:31435626-31435645 | None:intergenic | 50.0% |
| ! | TTCTAAGGGGAAAAGGGCTC+TGG | + | chr6_1:31435627-31435646 | Msa0882340:intron | 50.0% |
| ! | GGGAAAAGGGCTCTGGTAAT+CGG | + | chr6_1:31435634-31435653 | Msa0882340:intron | 50.0% |
| GTAATCGGAGTTCGGCCAAA+AGG | + | chr6_1:31435649-31435668 | Msa0882340:intron | 50.0% | |
| ATAATCTTTCGGCGCGGCAT+TGG | + | chr6_1:31436618-31436637 | Msa0882340:CDS | 50.0% | |
| ACATGCTCATTGCGCGTTTC+TGG | + | chr6_1:31436682-31436701 | Msa0882340:CDS | 50.0% | |
| CGGATCCGCTATTGTTGGAT+TGG | + | chr6_1:31437732-31437751 | Msa0882340:CDS | 50.0% | |
| ACATACCAACCACGTGAGTG+CGG | - | chr6_1:31438069-31438088 | None:intergenic | 50.0% | |
| ! | CACTCACGTGGTTGGTATGT+CGG | + | chr6_1:31438069-31438088 | Msa0882340:intron | 50.0% |
| TAACGCAGTAGGCACATTGG+TGG | - | chr6_1:31438190-31438209 | None:intergenic | 50.0% | |
| ! | ATAGGGAGTTGGGTATTGCG+GGG | - | chr6_1:31438283-31438302 | None:intergenic | 50.0% |
| ! | GATAGGGAGTTGGGTATTGC+GGG | - | chr6_1:31438284-31438303 | None:intergenic | 50.0% |
| !! | GATAATTGGTGCCACCACTG+AGG | + | chr6_1:31439563-31439582 | Msa0882340:CDS | 50.0% |
| ! | CGTTGACCCTCCGGTTCTAA+GGG | + | chr6_1:31435613-31435632 | Msa0882340:intron | 55.0% |
| !! | GTTGACCCTCCGGTTCTAAG+GGG | + | chr6_1:31435614-31435633 | Msa0882340:intron | 55.0% |
| ! | CCTTTTCCCCTTAGAACCGG+AGG | - | chr6_1:31435623-31435642 | None:intergenic | 55.0% |
| !! | CCTCCGGTTCTAAGGGGAAA+AGG | + | chr6_1:31435620-31435639 | Msa0882340:intron | 55.0% |
| ! | GGGCTCTGGTAATCGGAGTT+CGG | + | chr6_1:31435641-31435660 | Msa0882340:intron | 55.0% |
| ATACCAACCACGTGAGTGCG+GGG | - | chr6_1:31438067-31438086 | None:intergenic | 55.0% | |
| CATACCAACCACGTGAGTGC+GGG | - | chr6_1:31438068-31438087 | None:intergenic | 55.0% | |
| ! | GTAGGCACATTGGTGGTCGT+TGG | - | chr6_1:31438183-31438202 | None:intergenic | 55.0% |
| ! | GGAACTGGATCAAGGGTGTG+AGG | + | chr6_1:31439240-31439259 | Msa0882340:intron | 55.0% |
| ! | GCGTTGACCCTCCGGTTCTA+AGG | + | chr6_1:31435612-31435631 | Msa0882340:intron | 60.0% |
| GACAATTCCCCGCACTCACG+TGG | + | chr6_1:31438057-31438076 | Msa0882340:intron | 60.0% | |
| ATTCCCCGCACTCACGTGGT+TGG | + | chr6_1:31438061-31438080 | Msa0882340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 31434417 | 31439801 | 31434417 | ID=Msa0882340;Name=Msa0882340 |
| chr6_1 | mRNA | 31434417 | 31439801 | 31434417 | ID=Msa0882340-mRNA-1;Parent=Msa0882340;Name=Msa0882340-mRNA-1;_AED=0.25;_eAED=0.25;_QI=163|1|1|1|0.93|0.87|16|175|501 |
| chr6_1 | exon | 31434417 | 31434575 | 31434417 | ID=Msa0882340-mRNA-1:exon:7792;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31434597 | 31434742 | 31434597 | ID=Msa0882340-mRNA-1:exon:7793;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31435073 | 31435167 | 31435073 | ID=Msa0882340-mRNA-1:exon:7794;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31435371 | 31435484 | 31435371 | ID=Msa0882340-mRNA-1:exon:7795;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31435817 | 31435921 | 31435817 | ID=Msa0882340-mRNA-1:exon:7796;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31436037 | 31436108 | 31436037 | ID=Msa0882340-mRNA-1:exon:7797;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31436615 | 31436727 | 31436615 | ID=Msa0882340-mRNA-1:exon:7798;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31436798 | 31436932 | 31436798 | ID=Msa0882340-mRNA-1:exon:7799;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31437034 | 31437102 | 31437034 | ID=Msa0882340-mRNA-1:exon:7800;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31437305 | 31437392 | 31437305 | ID=Msa0882340-mRNA-1:exon:7801;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31437682 | 31437753 | 31437682 | ID=Msa0882340-mRNA-1:exon:7802;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31437838 | 31437938 | 31437838 | ID=Msa0882340-mRNA-1:exon:7803;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31438610 | 31438727 | 31438610 | ID=Msa0882340-mRNA-1:exon:7804;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31439082 | 31439141 | 31439082 | ID=Msa0882340-mRNA-1:exon:7805;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31439241 | 31439351 | 31439241 | ID=Msa0882340-mRNA-1:exon:7806;Parent=Msa0882340-mRNA-1 |
| chr6_1 | exon | 31439516 | 31439801 | 31439516 | ID=Msa0882340-mRNA-1:exon:7807;Parent=Msa0882340-mRNA-1 |
| chr6_1 | five_prime_UTR | 31434417 | 31434575 | 31434417 | ID=Msa0882340-mRNA-1:five_prime_utr;Parent=Msa0882340-mRNA-1 |
| chr6_1 | five_prime_UTR | 31434597 | 31434600 | 31434597 | ID=Msa0882340-mRNA-1:five_prime_utr;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31434601 | 31434742 | 31434601 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31435073 | 31435167 | 31435073 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31435371 | 31435484 | 31435371 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31435817 | 31435921 | 31435817 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31436037 | 31436108 | 31436037 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31436615 | 31436727 | 31436615 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31436798 | 31436932 | 31436798 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31437034 | 31437102 | 31437034 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31437305 | 31437392 | 31437305 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31437682 | 31437753 | 31437682 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31437838 | 31437938 | 31437838 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31438610 | 31438727 | 31438610 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31439082 | 31439141 | 31439082 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31439241 | 31439351 | 31439241 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | CDS | 31439516 | 31439626 | 31439516 | ID=Msa0882340-mRNA-1:cds;Parent=Msa0882340-mRNA-1 |
| chr6_1 | three_prime_UTR | 31439627 | 31439801 | 31439627 | ID=Msa0882340-mRNA-1:three_prime_utr;Parent=Msa0882340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
