Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054720 | XP_039684288.1 | 86.957 | 207 | 2 | 1 | 1 | 207 | 1 | 182 | 3.56e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054720 | A0A396GV32 | 86.957 | 207 | 2 | 1 | 1 | 207 | 1 | 182 | 1.70e-122 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa1054720 | 0.827265 | 1.721156e-54 | -8.615850e-47 |
| Msa0027540 | Msa1054720 | 0.806604 | 7.588556e-50 | -8.615850e-47 |
| Msa0030310 | Msa1054720 | 0.824357 | 8.434330e-54 | -8.615850e-47 |
| Msa0032120 | Msa1054720 | 0.814982 | 1.167109e-51 | -8.615850e-47 |
| Msa0032400 | Msa1054720 | 0.804717 | 1.889550e-49 | -8.615850e-47 |
| Msa0032840 | Msa1054720 | -0.832010 | 1.206276e-55 | -8.615850e-47 |
| Msa0048020 | Msa1054720 | 0.813796 | 2.135172e-51 | -8.615850e-47 |
| Msa0072810 | Msa1054720 | 0.826223 | 3.051515e-54 | -8.615850e-47 |
| Msa0103000 | Msa1054720 | 0.801665 | 8.090823e-49 | -8.615850e-47 |
| Msa0114540 | Msa1054720 | -0.812156 | 4.884145e-51 | -8.615850e-47 |
| Msa0120330 | Msa1054720 | 0.820766 | 5.765537e-53 | -8.615850e-47 |
| Msa0607200 | Msa1054720 | 0.813298 | 2.748057e-51 | -8.615850e-47 |
| Msa0642650 | Msa1054720 | 0.834230 | 3.379317e-56 | -8.615850e-47 |
| Msa0647380 | Msa1054720 | 0.821696 | 3.518791e-53 | -8.615850e-47 |
| Msa0681890 | Msa1054720 | 0.806907 | 6.547821e-50 | -8.615850e-47 |
| Msa0703760 | Msa1054720 | 0.810403 | 1.172955e-50 | -8.615850e-47 |
| Msa0759030 | Msa1054720 | 0.846362 | 2.278567e-59 | -8.615850e-47 |
| Msa0770430 | Msa1054720 | 0.803247 | 3.818489e-49 | -8.615850e-47 |
| Msa0139900 | Msa1054720 | 0.813506 | 2.472832e-51 | -8.615850e-47 |
| Msa0140220 | Msa1054720 | 0.809702 | 1.660469e-50 | -8.615850e-47 |
| Msa0141430 | Msa1054720 | 0.813150 | 2.960136e-51 | -8.615850e-47 |
| Msa0141830 | Msa1054720 | 0.815261 | 1.012237e-51 | -8.615850e-47 |
| Msa0168100 | Msa1054720 | 0.800438 | 1.441209e-48 | -8.615850e-47 |
| Msa0172960 | Msa1054720 | -0.820782 | 5.718890e-53 | -8.615850e-47 |
| Msa0183620 | Msa1054720 | 0.802635 | 5.108547e-49 | -8.615850e-47 |
| Msa0185700 | Msa1054720 | 0.813614 | 2.341168e-51 | -8.615850e-47 |
| Msa0230550 | Msa1054720 | -0.838754 | 2.382585e-57 | -8.615850e-47 |
| Msa0374070 | Msa1054720 | 0.813255 | 2.807749e-51 | -8.615850e-47 |
| Msa0423250 | Msa1054720 | 0.817068 | 3.995171e-52 | -8.615850e-47 |
| Msa0469390 | Msa1054720 | 0.800429 | 1.447184e-48 | -8.615850e-47 |
| Msa0990520 | Msa1054720 | 0.805612 | 1.227262e-49 | -8.615850e-47 |
| Msa1014270 | Msa1054720 | 0.811455 | 6.942566e-51 | -8.615850e-47 |
| Msa1018790 | Msa1054720 | 0.814620 | 1.404385e-51 | -8.615850e-47 |
| Msa1044340 | Msa1054720 | 0.830781 | 2.420901e-55 | -8.615850e-47 |
| Msa1045880 | Msa1054720 | 0.808446 | 3.085173e-50 | -8.615850e-47 |
| Msa1045970 | Msa1054720 | 0.814923 | 1.203273e-51 | -8.615850e-47 |
| Msa1046870 | Msa1054720 | 0.805678 | 1.188932e-49 | -8.615850e-47 |
| Msa1054720 | Msa1082700 | 0.816071 | 6.680262e-52 | -8.615850e-47 |
| Msa1054720 | Msa1087810 | 0.802894 | 4.516927e-49 | -8.615850e-47 |
| Msa1054720 | Msa1129560 | 0.831949 | 1.248753e-55 | -8.615850e-47 |
| Msa1054720 | Msa1129720 | 0.815146 | 1.073240e-51 | -8.615850e-47 |
| Msa1054720 | Msa1149760 | 0.800210 | 1.604040e-48 | -8.615850e-47 |
| Msa1054720 | Msa1159100 | 0.804379 | 2.222605e-49 | -8.615850e-47 |
| Msa1054720 | Msa1190910 | 0.808214 | 3.456586e-50 | -8.615850e-47 |
| Msa1054720 | Msa1197110 | 0.826057 | 3.342376e-54 | -8.615850e-47 |
| Msa1054720 | Msa1220450 | -0.800069 | 1.713362e-48 | -8.615850e-47 |
| Msa1054720 | Msa1223840 | 0.839291 | 1.730197e-57 | -8.615850e-47 |
| Msa1054720 | Msa1224670 | 0.834578 | 2.764801e-56 | -8.615850e-47 |
| Msa1054720 | Msa1263030 | 0.844523 | 7.172300e-59 | -8.615850e-47 |
| Msa1054720 | Msa1280120 | 0.810558 | 1.086066e-50 | -8.615850e-47 |
| Msa1054720 | Msa1337090 | 0.802041 | 6.771870e-49 | -8.615850e-47 |
| Msa1054720 | Msa1365870 | 0.823380 | 1.429260e-53 | -8.615850e-47 |
| Msa1054720 | Msa1374440 | 0.805704 | 1.174162e-49 | -8.615850e-47 |
| Msa1054720 | Msa1379990 | 0.812324 | 4.490770e-51 | -8.615850e-47 |
| Msa1054720 | Msa1382310 | 0.807364 | 5.241310e-50 | -8.615850e-47 |
| Msa1054720 | Msa1385900 | 0.802412 | 5.680128e-49 | -8.615850e-47 |
| Msa1054720 | Msa1389470 | 0.811265 | 7.633872e-51 | -8.615850e-47 |
| Msa1054720 | Msa1390310 | 0.807790 | 4.256361e-50 | -8.615850e-47 |
| Msa1054720 | Msa1391370 | 0.813499 | 2.482157e-51 | -8.615850e-47 |
| Msa1054720 | Msa1398480 | 0.812624 | 3.860905e-51 | -8.615850e-47 |
| Msa1054720 | Msa1422270 | 0.800318 | 1.524747e-48 | -8.615850e-47 |
| Msa1054720 | Msa1447230 | 0.814863 | 1.240674e-51 | -8.615850e-47 |
| Msa1054720 | Msa1462510 | 0.807467 | 4.984065e-50 | -8.615850e-47 |
| Msa0239660 | Msa1054720 | 0.815605 | 8.486001e-52 | -8.615850e-47 |
| Msa0246690 | Msa1054720 | 0.801039 | 1.086847e-48 | -8.615850e-47 |
| Msa0264350 | Msa1054720 | 0.813159 | 2.946975e-51 | -8.615850e-47 |
| Msa0267760 | Msa1054720 | 0.805430 | 1.340202e-49 | -8.615850e-47 |
| Msa0277640 | Msa1054720 | 0.801860 | 7.375338e-49 | -8.615850e-47 |
| Msa0298970 | Msa1054720 | 0.807317 | 5.361942e-50 | -8.615850e-47 |
| Msa0302450 | Msa1054720 | 0.812348 | 4.436011e-51 | -8.615850e-47 |
| Msa0319200 | Msa1054720 | 0.800151 | 1.649026e-48 | -8.615850e-47 |
| Msa0484690 | Msa1054720 | 0.805358 | 1.387366e-49 | -8.615850e-47 |
| Msa0490300 | Msa1054720 | 0.817603 | 3.027162e-52 | -8.615850e-47 |
| Msa0526700 | Msa1054720 | 0.800191 | 1.618068e-48 | -8.615850e-47 |
| Msa0527590 | Msa1054720 | 0.803563 | 3.284515e-49 | -8.615850e-47 |
| Msa0527600 | Msa1054720 | 0.802003 | 6.894918e-49 | -8.615850e-47 |
| Msa0532840 | Msa1054720 | 0.811897 | 5.562843e-51 | -8.615850e-47 |
| Msa0533010 | Msa1054720 | 0.807443 | 5.042001e-50 | -8.615850e-47 |
| Msa0546380 | Msa1054720 | 0.828534 | 8.521627e-55 | -8.615850e-47 |
| Msa0890250 | Msa1054720 | 0.807413 | 5.115544e-50 | -8.615850e-47 |
| Msa0910400 | Msa1054720 | 0.811876 | 5.621416e-51 | -8.615850e-47 |
| Msa0925160 | Msa1054720 | 0.822046 | 2.920017e-53 | -8.615850e-47 |
| Msa0955260 | Msa1054720 | 0.803356 | 3.624778e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054720 | MtrunA17_Chr7g0225391 | 86.957 | 207 | 2 | 1 | 1 | 207 | 1 | 182 | 3.27e-126 | 353 |
| Msa1054720 | MtrunA17_Chr7g0225271 | 86.473 | 207 | 3 | 1 | 1 | 207 | 1 | 182 | 2.43e-125 | 351 |
| Msa1054720 | MtrunA17_Chr1g0171241 | 80.882 | 68 | 13 | 0 | 140 | 207 | 8 | 75 | 1.11e-32 | 112 |
| Msa1054720 | MtrunA17_Chr1g0171231 | 97.143 | 35 | 1 | 0 | 10 | 44 | 1 | 35 | 5.35e-17 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1054720 | AT3G27050.1 | 60.976 | 205 | 55 | 1 | 1 | 205 | 1 | 180 | 7.08e-80 | 236 |
Find 68 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATAGTATCATCAGAAAT+TGG | 0.190147 | 7_2:+27034245 | None:intergenic |
| GTGTAGATCTTCCTGGTTCT+TGG | 0.255819 | 7_2:-27037300 | Msa1054720:intron |
| TTGCACCAGCAGATGGAAAA+TGG | 0.256502 | 7_2:-27035257 | Msa1054720:CDS |
| TCCATGATAAAGGCAGATTC+TGG | 0.267236 | 7_2:+27035141 | None:intergenic |
| AATCTCCTCAGCTGACAAAA+TGG | 0.305264 | 7_2:+27035214 | None:intergenic |
| CAAAATTTGTATCAAACATT+TGG | 0.313204 | 7_2:-27034467 | Msa1054720:three_prime_UTR |
| TGCTCTAACAGGATTCTTCT+TGG | 0.343983 | 7_2:-27037241 | Msa1054720:intron |
| AACCAAAGGGTCCATGATAA+AGG | 0.351958 | 7_2:+27035131 | None:intergenic |
| AGGATTTGGTATTTCATGTC+TGG | 0.352762 | 7_2:-27037004 | Msa1054720:CDS |
| AAGGATTGTTGATGCTGTTC+TGG | 0.354401 | 7_2:-27039189 | Msa1054720:CDS |
| TATACAACAGACCCAGGATT+TGG | 0.357173 | 7_2:-27037018 | Msa1054720:intron |
| TGCCTTTATCATGGACCCTT+TGG | 0.358378 | 7_2:-27035133 | Msa1054720:three_prime_UTR |
| TCATAGTATCATCAGAAATT+GGG | 0.371642 | 7_2:+27034246 | None:intergenic |
| CATCTCCGTGTAGATCTTCC+TGG | 0.374296 | 7_2:-27037307 | Msa1054720:intron |
| TCAGCTCTGCCTGCTCTAAC+AGG | 0.378914 | 7_2:-27037252 | Msa1054720:CDS |
| AATACAGGAAGAAATATTTC+TGG | 0.388622 | 7_2:-27038400 | Msa1054720:CDS |
| GCGCCATCAACAAAATTTAC+AGG | 0.390493 | 7_2:-27036174 | Msa1054720:CDS |
| AAGATTCGTTAAGCTTTGTT+TGG | 0.392087 | 7_2:-27039452 | Msa1054720:five_prime_UTR |
| GGCAGATTCTGGGTCTAACT+TGG | 0.394902 | 7_2:+27035152 | None:intergenic |
| AGAATTGAATCACCAAATCT+TGG | 0.402380 | 7_2:+27036953 | None:intergenic |
| TATCAAACATTTGGTGGAGT+TGG | 0.405582 | 7_2:-27034458 | Msa1054720:three_prime_UTR |
| AATGAGAGCTAATGTAAAGA+GGG | 0.407799 | 7_2:+27034327 | None:intergenic |
| TGCTGTGACCACTGCAATAC+AGG | 0.441123 | 7_2:-27038415 | Msa1054720:CDS |
| GGAAGAAATATTTCTGGAGA+TGG | 0.458162 | 7_2:-27038394 | Msa1054720:CDS |
| GCCTGCGATGAAGCAGAACT+TGG | 0.459552 | 7_2:-27036221 | Msa1054720:CDS |
| GCACATGCGCAAGTTTAACT+TGG | 0.467000 | 7_2:-27036021 | Msa1054720:CDS |
| CCCAGAATCTGCCTTTATCA+TGG | 0.470421 | 7_2:-27035142 | Msa1054720:three_prime_UTR |
| AATTTGTATCAAACATTTGG+TGG | 0.471645 | 7_2:-27034464 | Msa1054720:three_prime_UTR |
| CCATGATAAAGGCAGATTCT+GGG | 0.474417 | 7_2:+27035142 | None:intergenic |
| TCCAAGTTCTGCTTCATCGC+AGG | 0.476146 | 7_2:+27036220 | None:intergenic |
| GGATTTGGTATTTCATGTCT+GGG | 0.480524 | 7_2:-27037003 | Msa1054720:CDS |
| TGCACCAGCAGATGGAAAAT+GGG | 0.484261 | 7_2:-27035256 | Msa1054720:CDS |
| TTTGGTGGAGTTGGAGCTCC+AGG | 0.484611 | 7_2:-27034449 | Msa1054720:three_prime_UTR |
| TGAAGAGATAGTTCAAAGGA+AGG | 0.485020 | 7_2:-27035192 | Msa1054720:CDS |
| AGACATGAAATACCAAATCC+TGG | 0.485880 | 7_2:+27037006 | None:intergenic |
| GAGGTCGTTGCACTCAATCT+TGG | 0.491513 | 7_2:-27034225 | Msa1054720:three_prime_UTR |
| TTTCCAGTTGCACCAGCAGA+TGG | 0.499099 | 7_2:-27035264 | Msa1054720:intron |
| AAAGCAGTGGAATGTTAACT+AGG | 0.505354 | 7_2:-27039380 | Msa1054720:CDS |
| ATATGAGAATGACCAAGATT+TGG | 0.510384 | 7_2:-27036965 | Msa1054720:CDS |
| TATTTGAAGATGTGAAGAAA+AGG | 0.513199 | 7_2:-27039208 | Msa1054720:intron |
| TCTAACTTGGGCTAAACAGA+GGG | 0.531914 | 7_2:+27035165 | None:intergenic |
| AAGAAGAATCCTGTTAGAGC+AGG | 0.536459 | 7_2:+27037243 | None:intergenic |
| GAGCAGGCAGAGCTGAGCAC+AGG | 0.538573 | 7_2:+27037259 | None:intergenic |
| ATATTTCTGGAGATGGGTGT+TGG | 0.542978 | 7_2:-27038387 | Msa1054720:intron |
| AAATGAGAGCTAATGTAAAG+AGG | 0.548130 | 7_2:+27034326 | None:intergenic |
| ATGAAATGTCAGAGAAGAGA+TGG | 0.552163 | 7_2:-27036243 | Msa1054720:intron |
| AAATATAATACTGTTATACC+TGG | 0.560136 | 7_2:+27034431 | None:intergenic |
| TAGAGAGAACTTACTGAGCA+AGG | 0.560838 | 7_2:+27036923 | None:intergenic |
| TTGAACATGATATAACCAAA+GGG | 0.570343 | 7_2:+27035118 | None:intergenic |
| GAAGAAATATTTCTGGAGAT+GGG | 0.573289 | 7_2:-27038393 | Msa1054720:CDS |
| TGATGCTGTTCTGGATAAGC+AGG | 0.573770 | 7_2:-27039180 | Msa1054720:intron |
| GCTCTCATTTCTAGAATCTG+AGG | 0.574657 | 7_2:-27034313 | Msa1054720:three_prime_UTR |
| AGATTGAAGAGATAGTTCAA+AGG | 0.575956 | 7_2:-27035196 | Msa1054720:CDS |
| GACATGAAATACCAAATCCT+GGG | 0.577812 | 7_2:+27037007 | None:intergenic |
| GACAAGTGCTCACCTTCTCA+AGG | 0.578181 | 7_2:+27035982 | None:intergenic |
| TTTGAACATGATATAACCAA+AGG | 0.585253 | 7_2:+27035117 | None:intergenic |
| CATAGTATCATCAGAAATTG+GGG | 0.587134 | 7_2:+27034247 | None:intergenic |
| TATTTCTTCCTGTATTGCAG+TGG | 0.588165 | 7_2:+27038407 | None:intergenic |
| ATGAGAGCTAATGTAAAGAG+GGG | 0.588176 | 7_2:+27034328 | None:intergenic |
| AGTGCTCACCTTCTCAAGGA+TGG | 0.595067 | 7_2:+27035986 | None:intergenic |
| CAATTTCTGATGATACTATG+AGG | 0.595734 | 7_2:-27034244 | Msa1054720:three_prime_UTR |
| GCTTCTGAAACTCAAAGCAG+TGG | 0.597265 | 7_2:-27039393 | Msa1054720:CDS |
| GCAGATTCTGGGTCTAACTT+GGG | 0.598084 | 7_2:+27035153 | None:intergenic |
| AAGCAGTGGAATGTTAACTA+GGG | 0.611127 | 7_2:-27039379 | Msa1054720:CDS |
| GTCTAACTTGGGCTAAACAG+AGG | 0.611554 | 7_2:+27035164 | None:intergenic |
| TCAATCTGCCATCCTTGAGA+AGG | 0.618555 | 7_2:-27035994 | Msa1054720:intron |
| AGTGTTCTTACTTCACAACC+TGG | 0.625826 | 7_2:-27039327 | Msa1054720:intron |
| CTAACTTGGGCTAAACAGAG+GGG | 0.739149 | 7_2:+27035166 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATTTTAAGTTTTTAAT+TGG | - | chr7_2:27034796-27034815 | Msa1054720:intron | 10.0% |
| !!! | TTTTATTTATTTTAGTATTC+TGG | - | chr7_2:27037178-27037197 | Msa1054720:intron | 10.0% |
| !! | TAAATTATTCAAAACAGATA+AGG | + | chr7_2:27034364-27034383 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTAATTGGTAA+TGG | - | chr7_2:27034802-27034821 | Msa1054720:intron | 15.0% |
| !!! | TTTTACATCAATTTTAGTTT+TGG | - | chr7_2:27035528-27035547 | Msa1054720:intron | 15.0% |
| !!! | TTTACATCAATTTTAGTTTT+GGG | - | chr7_2:27035529-27035548 | Msa1054720:intron | 15.0% |
| !! | TTTATAAGAAATTTCAATAC+CGG | - | chr7_2:27035988-27036007 | Msa1054720:intron | 15.0% |
| !! | ATTTCATAATTCTTAGTATA+AGG | + | chr7_2:27037387-27037406 | None:intergenic | 15.0% |
| !!! | TTTTATATCATATTATTGCA+TGG | - | chr7_2:27037774-27037793 | Msa1054720:intron | 15.0% |
| !! | ATTAACAAGTTTATGTAAAT+CGG | + | chr7_2:27038997-27039016 | None:intergenic | 15.0% |
| !!! | TTCTTTTTGTGAATTGTTAA+TGG | - | chr7_2:27034228-27034247 | Msa1054720:three_prime_UTR | 20.0% |
| !! | TATTGCAACAAATTCAAAAA+GGG | + | chr7_2:27034398-27034417 | None:intergenic | 20.0% |
| !! | ATATTGCAACAAATTCAAAA+AGG | + | chr7_2:27034399-27034418 | None:intergenic | 20.0% |
| !!! | TTTTTGAATTTGTTGCAATA+TGG | - | chr7_2:27034398-27034417 | Msa1054720:three_prime_UTR | 20.0% |
| !! | TGTTAGGTAAAATTTCTATT+TGG | - | chr7_2:27034547-27034566 | Msa1054720:intron | 20.0% |
| !! | GTTAGGTAAAATTTCTATTT+GGG | - | chr7_2:27034548-27034567 | Msa1054720:intron | 20.0% |
| !!! | AGATTCTTCATTTTTGTTTA+TGG | - | chr7_2:27034596-27034615 | Msa1054720:intron | 20.0% |
| !!! | GATTCTTCATTTTTGTTTAT+GGG | - | chr7_2:27034597-27034616 | Msa1054720:intron | 20.0% |
| !! | AGTCTGTATTTGAAAATAAT+TGG | - | chr7_2:27034722-27034741 | Msa1054720:intron | 20.0% |
| !!! | TTTTTTAATTGCTAATGAGA+TGG | - | chr7_2:27034879-27034898 | Msa1054720:intron | 20.0% |
| !!! | AACATGGAAAAAAATAGTTT+TGG | - | chr7_2:27035031-27035050 | Msa1054720:intron | 20.0% |
| !! | TGTGTGTATATATATGTTAT+TGG | - | chr7_2:27035290-27035309 | Msa1054720:intron | 20.0% |
| !! | AAAAGAAATATCCTATCTAT+AGG | + | chr7_2:27035324-27035343 | None:intergenic | 20.0% |
| !!! | TTACATCAATTTTAGTTTTG+GGG | - | chr7_2:27035530-27035549 | Msa1054720:intron | 20.0% |
| !! | AGTTAATTGAATTCTATTAC+TGG | - | chr7_2:27036059-27036078 | Msa1054720:intron | 20.0% |
| !!! | TTCTTTTCTGTTTTAGTTTA+CGG | - | chr7_2:27036496-27036515 | Msa1054720:intron | 20.0% |
| !! | TCTGTTGTATAAACAAATAA+TGG | + | chr7_2:27036616-27036635 | None:intergenic | 20.0% |
| !!! | CTCTTAAGATTGATTTTTTA+TGG | + | chr7_2:27037254-27037273 | None:intergenic | 20.0% |
| !! | TAGATAACTTCGAAAAATTT+AGG | + | chr7_2:27037283-27037302 | None:intergenic | 20.0% |
| !! | TTAAACAGTTTATCTAAACA+AGG | - | chr7_2:27038101-27038120 | Msa1054720:intron | 20.0% |
| !! | ATCGAAATAATTAATATCCT+TGG | - | chr7_2:27038159-27038178 | Msa1054720:intron | 20.0% |
| !! | AATATTCAAATGTTTCAACT+TGG | - | chr7_2:27038234-27038253 | Msa1054720:intron | 20.0% |
| !! | AAGTGATAATTAATTACACT+TGG | + | chr7_2:27038563-27038582 | None:intergenic | 20.0% |
| !! | ATAATATACATTTGGCTAAT+AGG | + | chr7_2:27038635-27038654 | None:intergenic | 20.0% |
| !! | TAAGACAAATCTTAAAAATG+AGG | + | chr7_2:27038922-27038941 | None:intergenic | 20.0% |
| !!! | AATTTGTTATCTTATGATTG+TGG | - | chr7_2:27039152-27039171 | Msa1054720:intron | 20.0% |
| !! | CAAAATTTGTATCAAACATT+TGG | - | chr7_2:27039176-27039195 | Msa1054720:intron | 20.0% |
| !! | AAATATAATACTGTTATACC+TGG | + | chr7_2:27039215-27039234 | None:intergenic | 20.0% |
| ! | AGGAAACTGAATCAAAATTA+GGG | + | chr7_2:27034344-27034363 | None:intergenic | 25.0% |
| ! | AAGGAAACTGAATCAAAATT+AGG | + | chr7_2:27034345-27034364 | None:intergenic | 25.0% |
| ! | TATTTGAAGATGTGAAGAAA+AGG | - | chr7_2:27034435-27034454 | Msa1054720:three_prime_UTR | 25.0% |
| ! | ACAAAAATGAAGAATCTTTC+TGG | + | chr7_2:27034593-27034612 | None:intergenic | 25.0% |
| ! | TAATAGTCATAAACCAAACA+GGG | - | chr7_2:27034745-27034764 | Msa1054720:intron | 25.0% |
| ! | TAATGGTAATAAACCAAACA+GGG | - | chr7_2:27034819-27034838 | Msa1054720:intron | 25.0% |
| !!! | TGGAAAAAAATAGTTTTGGT+TGG | - | chr7_2:27035035-27035054 | Msa1054720:intron | 25.0% |
| ! | ACATAAGTATAATGTGAAAC+AGG | + | chr7_2:27035141-27035160 | None:intergenic | 25.0% |
| ! | AATACAGGAAGAAATATTTC+TGG | - | chr7_2:27035243-27035262 | Msa1054720:CDS | 25.0% |
| !! | AATTTTGAACTAGTCATTGA+TGG | - | chr7_2:27035374-27035393 | Msa1054720:intron | 25.0% |
| !!! | AATTTTAGTTTTGGGGATTT+TGG | - | chr7_2:27035537-27035556 | Msa1054720:intron | 25.0% |
| !!! | ATTTTAGTTTTGGGGATTTT+GGG | - | chr7_2:27035538-27035557 | Msa1054720:intron | 25.0% |
| ! | ATTCTATTACTGGAAAGATA+AGG | - | chr7_2:27036069-27036088 | Msa1054720:intron | 25.0% |
| ! | TTCTATTACTGGAAAGATAA+GGG | - | chr7_2:27036070-27036089 | Msa1054720:intron | 25.0% |
| ! | TCAATAAAAGTAAACTTGGA+GGG | + | chr7_2:27036133-27036152 | None:intergenic | 25.0% |
| ! | CAAGTCAATAAAAGTAAACT+TGG | + | chr7_2:27036137-27036156 | None:intergenic | 25.0% |
| ! | ATTGAAGAGAAAATGTTAAC+AGG | + | chr7_2:27036776-27036795 | None:intergenic | 25.0% |
| ! | CTCAAAGCTAGAAAATATAT+TGG | + | chr7_2:27036831-27036850 | None:intergenic | 25.0% |
| !!! | ATATATTTTCTAGCTTTGAG+TGG | - | chr7_2:27036831-27036850 | Msa1054720:intron | 25.0% |
| ! | AAGAAGTTAAATAAGATGCA+CGG | - | chr7_2:27036893-27036912 | Msa1054720:intron | 25.0% |
| !! | TTATGTTTAGGTTACGTATA+AGG | - | chr7_2:27037033-27037052 | Msa1054720:intron | 25.0% |
| !!! | TTTTTTTTCCTTCATGTTTG+AGG | - | chr7_2:27037120-27037139 | Msa1054720:intron | 25.0% |
| !!! | TTTTTTTCCTTCATGTTTGA+GGG | - | chr7_2:27037121-27037140 | Msa1054720:intron | 25.0% |
| !! | GAAAAAGTATAGAATAACTG+AGG | + | chr7_2:27037312-27037331 | None:intergenic | 25.0% |
| !!! | ATAGTTTTTTGTGTAGAGAT+AGG | + | chr7_2:27037336-27037355 | None:intergenic | 25.0% |
| !!! | ACACAGTTTTTTAATGCAAA+AGG | - | chr7_2:27037360-27037379 | Msa1054720:intron | 25.0% |
| !!! | CACAGTTTTTTAATGCAAAA+GGG | - | chr7_2:27037361-27037380 | Msa1054720:intron | 25.0% |
| !! | TTGAATTATGGATTATCCAA+CGG | - | chr7_2:27037708-27037727 | Msa1054720:intron | 25.0% |
| !! | TAACACAGAAATCTGTATTT+TGG | - | chr7_2:27037742-27037761 | Msa1054720:intron | 25.0% |
| !!! | TATTGCATGGTATTTGATTT+TGG | - | chr7_2:27037787-27037806 | Msa1054720:intron | 25.0% |
| ! | TCAGATGCATTTGATATTTA+TGG | + | chr7_2:27037814-27037833 | None:intergenic | 25.0% |
| ! | TAAATATCAAATGCATCTGA+TGG | - | chr7_2:27037814-27037833 | Msa1054720:intron | 25.0% |
| !! | TTTACAAGTATTTCTGTGAA+TGG | - | chr7_2:27037837-27037856 | Msa1054720:intron | 25.0% |
| !! | TTACAAGTATTTCTGTGAAT+GGG | - | chr7_2:27037838-27037857 | Msa1054720:intron | 25.0% |
| ! | GTAGTTATAAATAGTCTACT+AGG | - | chr7_2:27037910-27037929 | Msa1054720:intron | 25.0% |
| ! | TCATTTCAACTACTTTAACT+TGG | + | chr7_2:27038338-27038357 | None:intergenic | 25.0% |
| ! | TTGAACATGATATAACCAAA+GGG | + | chr7_2:27038528-27038547 | None:intergenic | 25.0% |
| ! | TTTGAACATGATATAACCAA+AGG | + | chr7_2:27038529-27038548 | None:intergenic | 25.0% |
| !!! | ACTTGTTAACTGTTTTGTAT+TGG | - | chr7_2:27038579-27038598 | Msa1054720:intron | 25.0% |
| ! | ATCGTGGAATAATATACATT+TGG | + | chr7_2:27038643-27038662 | None:intergenic | 25.0% |
| ! | AATAATACAACAACATATCG+TGG | + | chr7_2:27038659-27038678 | None:intergenic | 25.0% |
| ! | ATGTTCATGTTCTTCTTTAA+TGG | - | chr7_2:27038718-27038737 | Msa1054720:intron | 25.0% |
| !!! | TTGATACTTCATAAGTTGAT+AGG | + | chr7_2:27038946-27038965 | None:intergenic | 25.0% |
| !! | ATCAACTTATGAAGTATCAA+TGG | - | chr7_2:27038946-27038965 | Msa1054720:intron | 25.0% |
| !! | TTATGTAAATCGGCTTATTT+GGG | + | chr7_2:27038987-27039006 | None:intergenic | 25.0% |
| !! | TTTATGTAAATCGGCTTATT+TGG | + | chr7_2:27038988-27039007 | None:intergenic | 25.0% |
| ! | AATTTGTATCAAACATTTGG+TGG | - | chr7_2:27039179-27039198 | Msa1054720:intron | 25.0% |
| ! | TCATAGTATCATCAGAAATT+GGG | + | chr7_2:27039400-27039419 | None:intergenic | 25.0% |
| !! | AAGATTCGTTAAGCTTTGTT+TGG | - | chr7_2:27034191-27034210 | Msa1054720:three_prime_UTR | 30.0% |
| ATAAGCAGGTAAATTTCTTC+TGG | - | chr7_2:27034477-27034496 | Msa1054720:intron | 30.0% | |
| TAAGCAGGTAAATTTCTTCT+GGG | - | chr7_2:27034478-27034497 | Msa1054720:intron | 30.0% | |
| !! | TCTTCATTTTTGTTTATGGG+AGG | - | chr7_2:27034600-27034619 | Msa1054720:intron | 30.0% |
| ! | AGATGCACTTTTGATATAAC+TGG | - | chr7_2:27034631-27034650 | Msa1054720:intron | 30.0% |
| GTAATAGTCATAAACCAAAC+AGG | - | chr7_2:27034744-27034763 | Msa1054720:intron | 30.0% | |
| GTAATGGTAATAAACCAAAC+AGG | - | chr7_2:27034818-27034837 | Msa1054720:intron | 30.0% | |
| !! | TAGTGTTAAGTGGTTGTTTT+TGG | - | chr7_2:27034844-27034863 | Msa1054720:intron | 30.0% |
| GAAGATGAAAATACGAAACA+TGG | - | chr7_2:27035015-27035034 | Msa1054720:intron | 30.0% | |
| GAAAGTCAATTTGTAATGTG+TGG | - | chr7_2:27035164-27035183 | Msa1054720:exon | 30.0% | |
| !! | GAAGAAATATTTCTGGAGAT+GGG | - | chr7_2:27035250-27035269 | Msa1054720:CDS | 30.0% |
| ! | GATGTAGTATTACGTTTTTG+AGG | - | chr7_2:27035402-27035421 | Msa1054720:intron | 30.0% |
| !! | TCTACAGTTTAGTTCTGAAT+CGG | - | chr7_2:27035614-27035633 | Msa1054720:intron | 30.0% |
| ! | TTATACGGTTTATGGTTTTC+TGG | - | chr7_2:27035796-27035815 | Msa1054720:intron | 30.0% |
| GTCAATAAAAGTAAACTTGG+AGG | + | chr7_2:27036134-27036153 | None:intergenic | 30.0% | |
| ATATGAGAATGACCAAGATT+TGG | - | chr7_2:27036678-27036697 | Msa1054720:intron | 30.0% | |
| AGAATTGAATCACCAAATCT+TGG | + | chr7_2:27036693-27036712 | None:intergenic | 30.0% | |
| AGCTAGAAAATATATTGGCA+CGG | + | chr7_2:27036826-27036845 | None:intergenic | 30.0% | |
| TGATAAGTACTTACTCACTA+AGG | - | chr7_2:27036859-27036878 | Msa1054720:intron | 30.0% | |
| ! | TACTCACTAAGGTTTTTGTT+TGG | - | chr7_2:27036870-27036889 | Msa1054720:intron | 30.0% |
| ACTTTAGTCATACTTGCTTA+GGG | + | chr7_2:27036927-27036946 | None:intergenic | 30.0% | |
| AACTTTAGTCATACTTGCTT+AGG | + | chr7_2:27036928-27036947 | None:intergenic | 30.0% | |
| ! | TCTTTTATCGACATTACAGT+GGG | - | chr7_2:27037004-27037023 | Msa1054720:CDS | 30.0% |
| AACTTATTCCAACCAATATG+AGG | + | chr7_2:27037090-27037109 | None:intergenic | 30.0% | |
| ! | TGTGTTCTAAACAACTAATC+TGG | - | chr7_2:27037210-27037229 | Msa1054720:intron | 30.0% |
| ! | GTTCCTGTAAATTTTGTTGA+TGG | + | chr7_2:27037475-27037494 | None:intergenic | 30.0% |
| !! | GCACTACTTTTCTTGAATTA+TGG | - | chr7_2:27037696-27037715 | Msa1054720:intron | 30.0% |
| TAAATAAATGTAAGCGCGAT+TGG | - | chr7_2:27037876-27037895 | Msa1054720:intron | 30.0% | |
| AGATTGAAGAGATAGTTCAA+AGG | - | chr7_2:27038447-27038466 | Msa1054720:intron | 30.0% | |
| GAAGTAAACAATACATATCC+TGG | + | chr7_2:27038611-27038630 | None:intergenic | 30.0% | |
| CTAGCGATTATGACAAAAAA+TGG | + | chr7_2:27038867-27038886 | None:intergenic | 30.0% | |
| ACAAATCTTAAAAATGAGGC+GGG | + | chr7_2:27038918-27038937 | None:intergenic | 30.0% | |
| GACAAATCTTAAAAATGAGG+CGG | + | chr7_2:27038919-27038938 | None:intergenic | 30.0% | |
| AATGAGAGCTAATGTAAAGA+GGG | + | chr7_2:27039319-27039338 | None:intergenic | 30.0% | |
| AAATGAGAGCTAATGTAAAG+AGG | + | chr7_2:27039320-27039339 | None:intergenic | 30.0% | |
| ! | GTATGTGATGTATTTTGCAT+AGG | - | chr7_2:27039369-27039388 | Msa1054720:CDS | 30.0% |
| CATAGTATCATCAGAAATTG+GGG | + | chr7_2:27039399-27039418 | None:intergenic | 30.0% | |
| CTCATAGTATCATCAGAAAT+TGG | + | chr7_2:27039401-27039420 | None:intergenic | 30.0% | |
| CAATTTCTGATGATACTATG+AGG | - | chr7_2:27039399-27039418 | Msa1054720:CDS | 30.0% | |
| AAAGCAGTGGAATGTTAACT+AGG | - | chr7_2:27034263-27034282 | Msa1054720:three_prime_UTR | 35.0% | |
| AAGCAGTGGAATGTTAACTA+GGG | - | chr7_2:27034264-27034283 | Msa1054720:three_prime_UTR | 35.0% | |
| ! | TGAATCAAAATTAGGGTACC+AGG | + | chr7_2:27034337-27034356 | None:intergenic | 35.0% |
| CTGTGTTCTTCTTCAATGTT+AGG | - | chr7_2:27034531-27034550 | Msa1054720:intron | 35.0% | |
| ! | TGAAGAATCTTTCTGGAAAC+TGG | + | chr7_2:27034586-27034605 | None:intergenic | 35.0% |
| TTCAAATACAGACTCAGATC+TGG | + | chr7_2:27034716-27034735 | None:intergenic | 35.0% | |
| ! | TTTGGTTGGCTGTAGTTATA+CGG | - | chr7_2:27035049-27035068 | Msa1054720:intron | 35.0% |
| GACAAGTCTATTTGAATGTC+AGG | - | chr7_2:27035096-27035115 | Msa1054720:intron | 35.0% | |
| TATTTCTTCCTGTATTGCAG+TGG | + | chr7_2:27035239-27035258 | None:intergenic | 35.0% | |
| !! | GGAAGAAATATTTCTGGAGA+TGG | - | chr7_2:27035249-27035268 | Msa1054720:CDS | 35.0% |
| ! | TTTACTTCAAGTGCTGTCAA+GGG | + | chr7_2:27035578-27035597 | None:intergenic | 35.0% |
| TTGACAGCACTTGAAGTAAA+GGG | - | chr7_2:27035578-27035597 | Msa1054720:intron | 35.0% | |
| !!! | ATTTTGCTGATTGGCTTTAG+TGG | - | chr7_2:27035639-27035658 | Msa1054720:intron | 35.0% |
| CATAAACCGTATAAGTAGTG+GGG | + | chr7_2:27035790-27035809 | None:intergenic | 35.0% | |
| CCATAAACCGTATAAGTAGT+GGG | + | chr7_2:27035791-27035810 | None:intergenic | 35.0% | |
| ACCATAAACCGTATAAGTAG+TGG | + | chr7_2:27035792-27035811 | None:intergenic | 35.0% | |
| AGTTACCATCAAACACCATT+AGG | - | chr7_2:27035845-27035864 | Msa1054720:intron | 35.0% | |
| TTACTGAACTTCCAACCTAA+TGG | + | chr7_2:27035863-27035882 | None:intergenic | 35.0% | |
| AATTCCTTGCTCCTGTTATT+AGG | - | chr7_2:27035895-27035914 | Msa1054720:intron | 35.0% | |
| TATACCAGTAGCACATAATC+CGG | + | chr7_2:27036010-27036029 | None:intergenic | 35.0% | |
| ! | GATTATGTGCTACTGGTATA+AGG | - | chr7_2:27036010-27036029 | Msa1054720:CDS | 35.0% |
| AGGGAATTGTAACAGATCTA+GGG | + | chr7_2:27036104-27036123 | None:intergenic | 35.0% | |
| GGTGTTAGTTACATAGATGA+AGG | + | chr7_2:27036163-27036182 | None:intergenic | 35.0% | |
| AACGTAGAGTTTGAACGAAA+AGG | + | chr7_2:27036266-27036285 | None:intergenic | 35.0% | |
| !! | AGTTTTATCAACCAAGAACC+AGG | + | chr7_2:27036357-27036376 | None:intergenic | 35.0% |
| TGTTCTAACAGGATATCTGT+GGG | - | chr7_2:27036431-27036450 | Msa1054720:intron | 35.0% | |
| !!! | TTTTAGTTTACGGTAGCTGT+GGG | - | chr7_2:27036506-27036525 | Msa1054720:intron | 35.0% |
| TTTGTTTATACAACAGACCC+AGG | - | chr7_2:27036619-27036638 | Msa1054720:intron | 35.0% | |
| GACATGAAATACCAAATCCT+GGG | + | chr7_2:27036639-27036658 | None:intergenic | 35.0% | |
| AGACATGAAATACCAAATCC+TGG | + | chr7_2:27036640-27036659 | None:intergenic | 35.0% | |
| ! | AGGATTTGGTATTTCATGTC+TGG | - | chr7_2:27036639-27036658 | Msa1054720:intron | 35.0% |
| ! | GGATTTGGTATTTCATGTCT+GGG | - | chr7_2:27036640-27036659 | Msa1054720:intron | 35.0% |
| ATGACTAAAGTTCTGTTGAG+TGG | - | chr7_2:27036936-27036955 | Msa1054720:intron | 35.0% | |
| ! | GTCTTTTATCGACATTACAG+TGG | - | chr7_2:27037003-27037022 | Msa1054720:CDS | 35.0% |
| AGTGGGAGTTTCTTATGTTT+AGG | - | chr7_2:27037021-27037040 | Msa1054720:intron | 35.0% | |
| ATGAAATGTCAGAGAAGAGA+TGG | - | chr7_2:27037400-27037419 | Msa1054720:intron | 35.0% | |
| TGTTAATTGACTATGACCGT+TGG | + | chr7_2:27037727-27037746 | None:intergenic | 35.0% | |
| TGAGCTTTCATAGTTCAGTT+AGG | - | chr7_2:27037944-27037963 | Msa1054720:intron | 35.0% | |
| GAGCTTTCATAGTTCAGTTA+GGG | - | chr7_2:27037945-27037964 | Msa1054720:intron | 35.0% | |
| TGAAGAGATAGTTCAAAGGA+AGG | - | chr7_2:27038451-27038470 | Msa1054720:intron | 35.0% | |
| ! | GTTTTGTATTGGACAAATCC+AGG | - | chr7_2:27038590-27038609 | Msa1054720:intron | 35.0% |
| CATAATCGCTAGAACATGAA+TGG | - | chr7_2:27038875-27038894 | Msa1054720:intron | 35.0% | |
| CAAATCTTAAAAATGAGGCG+GGG | + | chr7_2:27038917-27038936 | None:intergenic | 35.0% | |
| ! | TATCAAACATTTGGTGGAGT+TGG | - | chr7_2:27039185-27039204 | Msa1054720:CDS | 35.0% |
| ATGAGAGCTAATGTAAAGAG+GGG | + | chr7_2:27039318-27039337 | None:intergenic | 35.0% | |
| AGTGTTCTTACTTCACAACC+TGG | - | chr7_2:27034316-27034335 | Msa1054720:three_prime_UTR | 40.0% | |
| GCAATATGGTTGTGTGTGTT+TGG | - | chr7_2:27034412-27034431 | Msa1054720:three_prime_UTR | 40.0% | |
| AAGGATTGTTGATGCTGTTC+TGG | - | chr7_2:27034454-27034473 | Msa1054720:three_prime_UTR | 40.0% | |
| TCATAAACCAAACAGGGCAA+TGG | - | chr7_2:27034751-27034770 | Msa1054720:intron | 40.0% | |
| ACTTAACACTATGCCCTGTT+TGG | + | chr7_2:27034835-27034854 | None:intergenic | 40.0% | |
| AAACAGGGCATAGTGTTAAG+TGG | - | chr7_2:27034834-27034853 | Msa1054720:intron | 40.0% | |
| !!! | GTGTGGTGTTGTCATTTTTC+TGG | - | chr7_2:27035181-27035200 | Msa1054720:CDS | 40.0% |
| !! | ATATTTCTGGAGATGGGTGT+TGG | - | chr7_2:27035256-27035275 | Msa1054720:CDS | 40.0% |
| GCAACAAAAGTTTGAGCTTG+CGG | - | chr7_2:27035424-27035443 | Msa1054720:intron | 40.0% | |
| AAAGTTTGAGCTTGCGGTAT+TGG | - | chr7_2:27035430-27035449 | Msa1054720:intron | 40.0% | |
| AAGTTTGAGCTTGCGGTATT+GGG | - | chr7_2:27035431-27035450 | Msa1054720:intron | 40.0% | |
| AGTGCTGTCAAGGGTAATTT+GGG | + | chr7_2:27035569-27035588 | None:intergenic | 40.0% | |
| ! | AAGTGCTGTCAAGGGTAATT+TGG | + | chr7_2:27035570-27035589 | None:intergenic | 40.0% |
| ! | CTTTACTTCAAGTGCTGTCA+AGG | + | chr7_2:27035579-27035598 | None:intergenic | 40.0% |
| CTTGACAGCACTTGAAGTAA+AGG | - | chr7_2:27035577-27035596 | Msa1054720:intron | 40.0% | |
| TGACAGCACTTGAAGTAAAG+GGG | - | chr7_2:27035579-27035598 | Msa1054720:intron | 40.0% | |
| ! | GAATCGGTGATTTTGCTGAT+TGG | - | chr7_2:27035630-27035649 | Msa1054720:intron | 40.0% |
| CTTGTTCAAAAACAAGCCAG+TGG | + | chr7_2:27035713-27035732 | None:intergenic | 40.0% | |
| TCAAGTCCCCACTACTTATA+CGG | - | chr7_2:27035781-27035800 | Msa1054720:intron | 40.0% | |
| CCCACTACTTATACGGTTTA+TGG | - | chr7_2:27035788-27035807 | Msa1054720:intron | 40.0% | |
| ACCATCAAACACCATTAGGT+TGG | - | chr7_2:27035849-27035868 | Msa1054720:intron | 40.0% | |
| TCCAACCTAATGGTGTTTGA+TGG | + | chr7_2:27035853-27035872 | None:intergenic | 40.0% | |
| CTGTTGCAATCATTGCAACA+TGG | + | chr7_2:27035962-27035981 | None:intergenic | 40.0% | |
| AATACCGGATTATGTGCTAC+TGG | - | chr7_2:27036003-27036022 | Msa1054720:CDS | 40.0% | |
| GAGGGAATTGTAACAGATCT+AGG | + | chr7_2:27036105-27036124 | None:intergenic | 40.0% | |
| TAAACTTGGAGGGAACTTGA+GGG | + | chr7_2:27036123-27036142 | None:intergenic | 40.0% | |
| TGTGCTCATAACCAATAGCT+GGG | + | chr7_2:27036205-27036224 | None:intergenic | 40.0% | |
| TTGTGCTCATAACCAATAGC+TGG | + | chr7_2:27036206-27036225 | None:intergenic | 40.0% | |
| CAGGGGATATTGACAATAGT+AGG | + | chr7_2:27036301-27036320 | None:intergenic | 40.0% | |
| AAGAACCAGGAAGATCTACA+CGG | + | chr7_2:27036344-27036363 | None:intergenic | 40.0% | |
| AAGAAGAATCCTGTTAGAGC+AGG | + | chr7_2:27036403-27036422 | None:intergenic | 40.0% | |
| TGCTCTAACAGGATTCTTCT+TGG | - | chr7_2:27036402-27036421 | Msa1054720:intron | 40.0% | |
| CTTGGTAAGACTGTTCTAAC+AGG | - | chr7_2:27036420-27036439 | Msa1054720:intron | 40.0% | |
| CTGTTCTAACAGGATATCTG+TGG | - | chr7_2:27036430-27036449 | Msa1054720:intron | 40.0% | |
| GTTCTAACAGGATATCTGTG+GGG | - | chr7_2:27036432-27036451 | Msa1054720:intron | 40.0% | |
| TTCTAACAGGATATCTGTGG+GGG | - | chr7_2:27036433-27036452 | Msa1054720:intron | 40.0% | |
| !!! | GTTTTAGTTTACGGTAGCTG+TGG | - | chr7_2:27036505-27036524 | Msa1054720:intron | 40.0% |
| ! | TTTAGTTTACGGTAGCTGTG+GGG | - | chr7_2:27036507-27036526 | Msa1054720:intron | 40.0% |
| !! | AGTTGGGGCATTTTGATACA+CGG | - | chr7_2:27036532-27036551 | Msa1054720:intron | 40.0% |
| TATACAACAGACCCAGGATT+TGG | - | chr7_2:27036625-27036644 | Msa1054720:intron | 40.0% | |
| TAGAGAGAACTTACTGAGCA+AGG | + | chr7_2:27036723-27036742 | None:intergenic | 40.0% | |
| AAAGTTCTGTTGAGTGGAAG+TGG | - | chr7_2:27036942-27036961 | Msa1054720:CDS | 40.0% | |
| AAGTTCTGTTGAGTGGAAGT+GGG | - | chr7_2:27036943-27036962 | Msa1054720:CDS | 40.0% | |
| GCGCCATCAACAAAATTTAC+AGG | - | chr7_2:27037469-27037488 | Msa1054720:intron | 40.0% | |
| ACACTTAGATAGAGATGCTG+CGG | - | chr7_2:27037543-27037562 | Msa1054720:intron | 40.0% | |
| TAGTTCAGTTAGGGTCTGTT+TGG | - | chr7_2:27037954-27037973 | Msa1054720:intron | 40.0% | |
| TATAGTGCCGTAAGAACTTG+TGG | - | chr7_2:27037994-27038013 | Msa1054720:intron | 40.0% | |
| ATAGTGCCGTAAGAACTTGT+GGG | - | chr7_2:27037995-27038014 | Msa1054720:intron | 40.0% | |
| AAGAGTCCCACAAGTTCTTA+CGG | + | chr7_2:27038004-27038023 | None:intergenic | 40.0% | |
| TAAGAACTTGTGGGACTCTT+TGG | - | chr7_2:27038004-27038023 | Msa1054720:intron | 40.0% | |
| ! | AATTCCCATTTTCCATCTGC+TGG | + | chr7_2:27038394-27038413 | None:intergenic | 40.0% |
| AATCTCCTCAGCTGACAAAA+TGG | + | chr7_2:27038432-27038451 | None:intergenic | 40.0% | |
| TCTAACTTGGGCTAAACAGA+GGG | + | chr7_2:27038481-27038500 | None:intergenic | 40.0% | |
| CCATGATAAAGGCAGATTCT+GGG | + | chr7_2:27038504-27038523 | None:intergenic | 40.0% | |
| TCCATGATAAAGGCAGATTC+TGG | + | chr7_2:27038505-27038524 | None:intergenic | 40.0% | |
| AACCAAAGGGTCCATGATAA+AGG | + | chr7_2:27038515-27038534 | None:intergenic | 40.0% | |
| ACATTGCAGTTATCACCTTG+AGG | - | chr7_2:27038761-27038780 | Msa1054720:intron | 40.0% | |
| TATCACCTTGAGGAAACGTT+TGG | - | chr7_2:27038771-27038790 | Msa1054720:intron | 40.0% | |
| !! | GCTCTCATTTCTAGAATCTG+AGG | - | chr7_2:27039330-27039349 | Msa1054720:CDS | 40.0% |
| !! | GCTTCTGAAACTCAAAGCAG+TGG | - | chr7_2:27034250-27034269 | Msa1054720:three_prime_UTR | 45.0% |
| ! | TGATGCTGTTCTGGATAAGC+AGG | - | chr7_2:27034463-27034482 | Msa1054720:three_prime_UTR | 45.0% |
| CTTAACACCATTGCCCTGTT+TGG | + | chr7_2:27034761-27034780 | None:intergenic | 45.0% | |
| TGGTGCGTGTACCTATAGAT+AGG | - | chr7_2:27035310-27035329 | Msa1054720:intron | 45.0% | |
| AGTTTGAGCTTGCGGTATTG+GGG | - | chr7_2:27035432-27035451 | Msa1054720:intron | 45.0% | |
| GACAGCACTTGAAGTAAAGG+GGG | - | chr7_2:27035580-27035599 | Msa1054720:intron | 45.0% | |
| ACAGCACTTGAAGTAAAGGG+GGG | - | chr7_2:27035581-27035600 | Msa1054720:intron | 45.0% | |
| GCATCCTAATAACAGGAGCA+AGG | + | chr7_2:27035902-27035921 | None:intergenic | 45.0% | |
| TCTCCAGGCATCCTAATAAC+AGG | + | chr7_2:27035909-27035928 | None:intergenic | 45.0% | |
| TGTTATTAGGATGCCTGGAG+AGG | - | chr7_2:27035908-27035927 | Msa1054720:intron | 45.0% | |
| GTAAACTTGGAGGGAACTTG+AGG | + | chr7_2:27036124-27036143 | None:intergenic | 45.0% | |
| ATAACCAATAGCTGGGAGGT+TGG | + | chr7_2:27036198-27036217 | None:intergenic | 45.0% | |
| TTCTGCTCCGTTTCCATTAG+TGG | - | chr7_2:27036233-27036252 | Msa1054720:CDS | 45.0% | |
| CAGAGCTCCACTAATGGAAA+CGG | + | chr7_2:27036243-27036262 | None:intergenic | 45.0% | |
| AAAAGGCAGAGCTCCACTAA+TGG | + | chr7_2:27036249-27036268 | None:intergenic | 45.0% | |
| ATGTGAAGGAACTCTCAGCA+GGG | + | chr7_2:27036319-27036338 | None:intergenic | 45.0% | |
| AGATCTACACGGAGATGTGA+AGG | + | chr7_2:27036333-27036352 | None:intergenic | 45.0% | |
| ! | GTGTAGATCTTCCTGGTTCT+TGG | - | chr7_2:27036343-27036362 | Msa1054720:intron | 45.0% |
| AGTTCTGTTGAGTGGAAGTG+GGG | - | chr7_2:27036944-27036963 | Msa1054720:CDS | 45.0% | |
| CAACCAATATGAGGACTCTG+TGG | + | chr7_2:27037081-27037100 | None:intergenic | 45.0% | |
| CACAGAGTCCTCATATTGGT+TGG | - | chr7_2:27037079-27037098 | Msa1054720:intron | 45.0% | |
| TCCTTCATGTTTGAGGGCTT+TGG | - | chr7_2:27037127-27037146 | Msa1054720:intron | 45.0% | |
| TCCAAAGCCCTCAAACATGA+AGG | + | chr7_2:27037131-27037150 | None:intergenic | 45.0% | |
| !! | TGTTTGAGGGCTTTGGAAGA+TGG | - | chr7_2:27037134-27037153 | Msa1054720:intron | 45.0% |
| GCACATGCGCAAGTTTAACT+TGG | - | chr7_2:27037622-27037641 | Msa1054720:intron | 45.0% | |
| TCAATCTGCCATCCTTGAGA+AGG | - | chr7_2:27037649-27037668 | Msa1054720:intron | 45.0% | |
| AATGTAAGCGCGATTGGTGA+TGG | - | chr7_2:27037882-27037901 | Msa1054720:intron | 45.0% | |
| ! | ATGTAAGCGCGATTGGTGAT+GGG | - | chr7_2:27037883-27037902 | Msa1054720:intron | 45.0% |
| CATTGACGATTCAGCAACCA+AGG | + | chr7_2:27038179-27038198 | None:intergenic | 45.0% | |
| CTTGGTTGCTGAATCGTCAA+TGG | - | chr7_2:27038177-27038196 | Msa1054720:intron | 45.0% | |
| TTGCACCAGCAGATGGAAAA+TGG | - | chr7_2:27038386-27038405 | Msa1054720:intron | 45.0% | |
| TGCACCAGCAGATGGAAAAT+GGG | - | chr7_2:27038387-27038406 | Msa1054720:intron | 45.0% | |
| ! | GACATCCATTTTGTCAGCTG+AGG | - | chr7_2:27038424-27038443 | Msa1054720:CDS | 45.0% |
| CTAACTTGGGCTAAACAGAG+GGG | + | chr7_2:27038480-27038499 | None:intergenic | 45.0% | |
| GTCTAACTTGGGCTAAACAG+AGG | + | chr7_2:27038482-27038501 | None:intergenic | 45.0% | |
| GCAGATTCTGGGTCTAACTT+GGG | + | chr7_2:27038493-27038512 | None:intergenic | 45.0% | |
| CCCAGAATCTGCCTTTATCA+TGG | - | chr7_2:27038501-27038520 | Msa1054720:intron | 45.0% | |
| TGCCTTTATCATGGACCCTT+TGG | - | chr7_2:27038510-27038529 | Msa1054720:intron | 45.0% | |
| GACATCCAAACGTTTCCTCA+AGG | + | chr7_2:27038779-27038798 | None:intergenic | 45.0% | |
| TTAAAAATGAGGCGGGGTCT+AGG | + | chr7_2:27038911-27038930 | None:intergenic | 45.0% | |
| !!! | GTTAATTTATTTTATTTTAT+AGG | - | chr7_2:27039011-27039030 | Msa1054720:intron | 5.0% |
| !!! | TTATATTTTTGTTTATTTAA+AGG | - | chr7_2:27039227-27039246 | Msa1054720:intron | 5.0% |
| !!! | TATATTTTTGTTTATTTAAA+GGG | - | chr7_2:27039228-27039247 | Msa1054720:intron | 5.0% |
| !! | TTCTGGAACTACCGATGAGC+AGG | - | chr7_2:27035198-27035217 | Msa1054720:CDS | 50.0% |
| AGCAACAGCTTCCTGCTCAT+CGG | + | chr7_2:27035212-27035231 | None:intergenic | 50.0% | |
| TGCTGTGACCACTGCAATAC+AGG | - | chr7_2:27035228-27035247 | Msa1054720:CDS | 50.0% | |
| CAGCACTTGAAGTAAAGGGG+GGG | - | chr7_2:27035582-27035601 | Msa1054720:intron | 50.0% | |
| GCTCCTGTTATTAGGATGCC+TGG | - | chr7_2:27035903-27035922 | Msa1054720:intron | 50.0% | |
| !! | GGAGGTTGGTGGTGATAGTT+AGG | + | chr7_2:27036184-27036203 | None:intergenic | 50.0% |
| GCTCATAACCAATAGCTGGG+AGG | + | chr7_2:27036202-27036221 | None:intergenic | 50.0% | |
| TGTGAAGGAACTCTCAGCAG+GGG | + | chr7_2:27036318-27036337 | None:intergenic | 50.0% | |
| GATGTGAAGGAACTCTCAGC+AGG | + | chr7_2:27036320-27036339 | None:intergenic | 50.0% | |
| CATCTCCGTGTAGATCTTCC+TGG | - | chr7_2:27036336-27036355 | Msa1054720:intron | 50.0% | |
| ACGCCACAGAGTCCTCATAT+TGG | - | chr7_2:27037075-27037094 | Msa1054720:intron | 50.0% | |
| TCCAAGTTCTGCTTCATCGC+AGG | + | chr7_2:27037426-27037445 | None:intergenic | 50.0% | |
| TTTCCAGTTGCACCAGCAGA+TGG | - | chr7_2:27038379-27038398 | Msa1054720:intron | 50.0% | |
| TTTCCATCTGCTGGTGCAAC+TGG | + | chr7_2:27038385-27038404 | None:intergenic | 50.0% | |
| GGCAGATTCTGGGTCTAACT+TGG | + | chr7_2:27038494-27038513 | None:intergenic | 50.0% | |
| GAGGTCGTTGCACTCAATCT+TGG | - | chr7_2:27039418-27039437 | Msa1054720:exon | 50.0% | |
| ATTGAGATGAGCTGCGCCAC+TGG | - | chr7_2:27035694-27035713 | Msa1054720:intron | 55.0% | |
| AGGATGCCTGGAGAGGTTGT+CGG | - | chr7_2:27035915-27035934 | Msa1054720:intron | 55.0% | |
| ACCACCAACCTCCCAGCTAT+TGG | - | chr7_2:27036191-27036210 | Msa1054720:CDS | 55.0% | |
| ACCAATAGCTGGGAGGTTGG+TGG | + | chr7_2:27036195-27036214 | None:intergenic | 55.0% | |
| TCAGCTCTGCCTGCTCTAAC+AGG | - | chr7_2:27036391-27036410 | Msa1054720:intron | 55.0% | |
| ACGGTAGCTGTGGGGTAAGT+TGG | - | chr7_2:27036515-27036534 | Msa1054720:intron | 55.0% | |
| CGGTAGCTGTGGGGTAAGTT+GGG | - | chr7_2:27036516-27036535 | Msa1054720:intron | 55.0% | |
| GGTAGCTGTGGGGTAAGTTG+GGG | - | chr7_2:27036517-27036536 | Msa1054720:intron | 55.0% | |
| GCCTGCGATGAAGCAGAACT+TGG | - | chr7_2:27037422-27037441 | Msa1054720:intron | 55.0% | |
| TTTGGTGGAGTTGGAGCTCC+AGG | - | chr7_2:27039194-27039213 | Msa1054720:CDS | 55.0% | |
| GGATGCCTGGAGAGGTTGTC+GGG | - | chr7_2:27035916-27035935 | Msa1054720:intron | 60.0% | |
| GATGTCCCGACAACCTCTCC+AGG | + | chr7_2:27035924-27035943 | None:intergenic | 60.0% | |
| GAGCAGGCAGAGCTGAGCAC+AGG | + | chr7_2:27036387-27036406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 27034177 | 27039488 | 27034177 | ID=Msa1054720;Name=Msa1054720 |
| chr7_2 | mRNA | 27034177 | 27039488 | 27034177 | ID=Msa1054720-mRNA-1;Parent=Msa1054720;Name=Msa1054720-mRNA-1;_AED=0.23;_eAED=0.23;_QI=70|0.75|0.88|0.88|0.62|0.55|9|363|207 |
| chr7_2 | exon | 27034177 | 27034490 | 27034177 | ID=Msa1054720-mRNA-1:exon:5751;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27035117 | 27035279 | 27035117 | ID=Msa1054720-mRNA-1:exon:5750;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27035995 | 27036060 | 27035995 | ID=Msa1054720-mRNA-1:exon:5749;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27036169 | 27036253 | 27036169 | ID=Msa1054720-mRNA-1:exon:5748;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27036937 | 27037030 | 27036937 | ID=Msa1054720-mRNA-1:exon:5747;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27037242 | 27037316 | 27037242 | ID=Msa1054720-mRNA-1:exon:5746;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27038388 | 27038445 | 27038388 | ID=Msa1054720-mRNA-1:exon:5745;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27039181 | 27039221 | 27039181 | ID=Msa1054720-mRNA-1:exon:5744;Parent=Msa1054720-mRNA-1 |
| chr7_2 | exon | 27039328 | 27039488 | 27039328 | ID=Msa1054720-mRNA-1:exon:5743;Parent=Msa1054720-mRNA-1 |
| chr7_2 | five_prime_UTR | 27039419 | 27039488 | 27039419 | ID=Msa1054720-mRNA-1:five_prime_utr;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27039328 | 27039418 | 27039328 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27039181 | 27039221 | 27039181 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27038388 | 27038445 | 27038388 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27037242 | 27037316 | 27037242 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27036937 | 27037030 | 27036937 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27036169 | 27036253 | 27036169 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27035995 | 27036060 | 27035995 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | CDS | 27035166 | 27035279 | 27035166 | ID=Msa1054720-mRNA-1:cds;Parent=Msa1054720-mRNA-1 |
| chr7_2 | three_prime_UTR | 27035117 | 27035165 | 27035117 | ID=Msa1054720-mRNA-1:three_prime_utr;Parent=Msa1054720-mRNA-1 |
| chr7_2 | three_prime_UTR | 27034177 | 27034490 | 27034177 | ID=Msa1054720-mRNA-1:three_prime_utr;Parent=Msa1054720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
