AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344210 MtrunA17_CPg0492851 92.923 325 1 2 65 367 1 325 0.0 599
Msa0344210 MtrunA17_Chr4g0015731 92.923 325 1 2 65 367 1 325 0.0 599
Msa0344210 MtrunA17_Chr4g0016821 92.923 325 1 2 65 367 1 325 0.0 599
Msa0344210 MtrunA17_Chr4g0016981 75.000 100 14 3 108 198 42 139 4.11e-39 136
Msa0344210 MtrunA17_Chr4g0016991 95.385 65 3 0 303 367 1 65 2.61e-36 126
Msa0344210 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 3.81e-35 127
Msa0344210 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.84e-34 127
Msa0344210 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.84e-34 127
Msa0344210 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.02e-34 127
Msa0344210 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.85e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344210 ATCG00540.1 84.062 320 29 2 70 367 1 320 0.0 535
Msa0344210 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.17e-18 83.6

Find 80 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 3_1:+2715891 Msa0344210:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 3_1:+2714477 Msa0344210:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 3_1:+2715876 Msa0344210:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 3_1:+2714478 Msa0344210:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 3_1:+2715460 Msa0344210:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 3_1:-2715799 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 3_1:-2714472 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 3_1:-2715197 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 3_1:+2715563 Msa0344210:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 3_1:-2715472 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 3_1:+2715811 Msa0344210:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 3_1:+2714510 Msa0344210:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 3_1:+2715664 Msa0344210:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 3_1:+2715564 Msa0344210:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 3_1:-2715562 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 3_1:+2715294 Msa0344210:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 3_1:-2714400 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 3_1:-2715754 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 3_1:+2715816 Msa0344210:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 3_1:-2715814 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 3_1:-2715279 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 3_1:+2714511 Msa0344210:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 3_1:-2715520 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 3_1:-2715112 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 3_1:+2715631 Msa0344210:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 3_1:-2715070 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 3_1:-2714421 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 3_1:+2715461 Msa0344210:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 3_1:-2715604 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 3_1:+2714464 Msa0344210:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 3_1:-2714433 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 3_1:-2715246 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 3_1:-2715019 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 3_1:+2715687 Msa0344210:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 3_1:-2715247 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 3_1:-2715478 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 3_1:-2715111 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 3_1:-2715064 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 3_1:+2715859 Msa0344210:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 3_1:-2715076 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 3_1:-2715159 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 3_1:+2715557 Msa0344210:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 3_1:+2715818 Msa0344210:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 3_1:-2715605 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 3_1:+2715754 Msa0344210:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 3_1:-2715473 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 3_1:+2715817 Msa0344210:CDS
CTAAGTGGTTATTCTATTAG+GGG 0.545375 3_1:+2714479 Msa0344210:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 3_1:-2715748 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 3_1:-2715508 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 3_1:+2715571 Msa0344210:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 3_1:-2714427 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 3_1:-2715527 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 3_1:+2715753 Msa0344210:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 3_1:+2715154 Msa0344210:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 3_1:-2715065 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 3_1:+2715730 Msa0344210:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 3_1:-2715526 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 3_1:+2715801 Msa0344210:CDS
GGGGTCAGATTTATCCCGAC+GGG 0.575656 3_1:+2715590 Msa0344210:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 3_1:+2715569 Msa0344210:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 3_1:+2715700 Msa0344210:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 3_1:-2715503 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 3_1:-2715865 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 3_1:+2715153 Msa0344210:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 3_1:+2715819 Msa0344210:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 3_1:+2715556 Msa0344210:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 3_1:+2715553 Msa0344210:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 3_1:+2715805 Msa0344210:CDS
ATTAGCACATACAATCCGCC+CGG 0.633238 3_1:-2715172 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 3_1:+2715696 Msa0344210:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 3_1:-2715471 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 3_1:+2715565 Msa0344210:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 3_1:+2715570 Msa0344210:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 3_1:+2715802 Msa0344210:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 3_1:+2715218 Msa0344210:intron
AGGGGTCAGATTTATCCCGA+CGG 0.672516 3_1:+2715589 Msa0344210:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 3_1:-2715231 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 3_1:-2715745 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 3_1:+2715157 Msa0344210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG - chr3_1:2714586-2714605 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr3_1:2714587-2714606 Msa0344210:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr3_1:2714722-2714741 Msa0344210:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr3_1:2714982-2715001 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - chr3_1:2715445-2715464 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr3_1:2715664-2715683 Msa0344210:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr3_1:2715933-2715952 Msa0344210:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG - chr3_1:2714586-2714605 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr3_1:2714587-2714606 Msa0344210:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr3_1:2714722-2714741 Msa0344210:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr3_1:2714982-2715001 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - chr3_1:2715445-2715464 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr3_1:2715664-2715683 Msa0344210:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr3_1:2715933-2715952 Msa0344210:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr3_1:2714715-2714734 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr3_1:2714823-2714842 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr3_1:2714914-2714933 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr3_1:2714983-2715002 Msa0344210:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr3_1:2715398-2715417 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr3_1:2715446-2715465 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr3_1:2715444-2715463 Msa0344210:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr3_1:2715448-2715467 Msa0344210:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr3_1:2715553-2715572 Msa0344210:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr3_1:2714715-2714734 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr3_1:2714823-2714842 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr3_1:2714914-2714933 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr3_1:2714983-2715002 Msa0344210:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr3_1:2715398-2715417 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr3_1:2715446-2715465 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr3_1:2715444-2715463 Msa0344210:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr3_1:2715448-2715467 Msa0344210:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr3_1:2715553-2715572 Msa0344210:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr3_1:2714464-2714483 Msa0344210:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr3_1:2714475-2714494 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr3_1:2714477-2714496 Msa0344210:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr3_1:2714478-2714497 Msa0344210:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr3_1:2714510-2714529 Msa0344210:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr3_1:2714511-2714530 Msa0344210:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr3_1:2714673-2714692 Msa0344210:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr3_1:2714753-2714772 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr3_1:2714932-2714951 Msa0344210:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr3_1:2714937-2714956 Msa0344210:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr3_1:2714938-2714957 Msa0344210:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr3_1:2714978-2714997 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr3_1:2714995-2715014 Msa0344210:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr3_1:2715025-2715044 Msa0344210:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr3_1:2715032-2715051 Msa0344210:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr3_1:2715079-2715098 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr3_1:2715282-2715301 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr3_1:2715304-2715323 Msa0344210:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr3_1:2715397-2715416 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr3_1:2715667-2715686 Msa0344210:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr3_1:2715906-2715925 Msa0344210:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr3_1:2714464-2714483 Msa0344210:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr3_1:2714475-2714494 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr3_1:2714477-2714496 Msa0344210:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr3_1:2714478-2714497 Msa0344210:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr3_1:2714510-2714529 Msa0344210:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr3_1:2714511-2714530 Msa0344210:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr3_1:2714673-2714692 Msa0344210:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr3_1:2714753-2714772 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr3_1:2714932-2714951 Msa0344210:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr3_1:2714937-2714956 Msa0344210:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr3_1:2714938-2714957 Msa0344210:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr3_1:2714978-2714997 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr3_1:2714995-2715014 Msa0344210:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr3_1:2715025-2715044 Msa0344210:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr3_1:2715032-2715051 Msa0344210:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr3_1:2715079-2715098 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr3_1:2715282-2715301 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr3_1:2715304-2715323 Msa0344210:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr3_1:2715397-2715416 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr3_1:2715667-2715686 Msa0344210:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr3_1:2715906-2715925 Msa0344210:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - chr3_1:2714430-2714449 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr3_1:2714436-2714455 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + chr3_1:2714479-2714498 Msa0344210:CDS 30.0%
! TGGGTCTGTCTATAAAATTT+TGG + chr3_1:2714643-2714662 Msa0344210:intron 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr3_1:2714707-2714726 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr3_1:2714775-2714794 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr3_1:2714901-2714920 Msa0344210:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr3_1:2714971-2714990 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr3_1:2715022-2715041 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr3_1:2715114-2715133 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr3_1:2715115-2715134 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr3_1:2715206-2715225 Msa0344210:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr3_1:2715250-2715269 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr3_1:2715294-2715313 Msa0344210:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr3_1:2715303-2715322 Msa0344210:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr3_1:2715305-2715324 Msa0344210:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr3_1:2715394-2715413 Msa0344210:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr3_1:2715481-2715500 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr3_1:2715556-2715575 Msa0344210:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr3_1:2715802-2715821 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr3_1:2715801-2715820 Msa0344210:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr3_1:2715802-2715821 Msa0344210:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr3_1:2715891-2715910 Msa0344210:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG - chr3_1:2714430-2714449 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr3_1:2714436-2714455 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + chr3_1:2714479-2714498 Msa0344210:CDS 30.0%
! TGGGTCTGTCTATAAAATTT+TGG + chr3_1:2714643-2714662 Msa0344210:intron 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr3_1:2714707-2714726 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr3_1:2714775-2714794 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr3_1:2714901-2714920 Msa0344210:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr3_1:2714971-2714990 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr3_1:2715022-2715041 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr3_1:2715114-2715133 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr3_1:2715115-2715134 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr3_1:2715206-2715225 Msa0344210:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr3_1:2715250-2715269 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr3_1:2715294-2715313 Msa0344210:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr3_1:2715303-2715322 Msa0344210:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr3_1:2715305-2715324 Msa0344210:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr3_1:2715394-2715413 Msa0344210:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr3_1:2715481-2715500 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr3_1:2715556-2715575 Msa0344210:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr3_1:2715802-2715821 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr3_1:2715801-2715820 Msa0344210:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr3_1:2715802-2715821 Msa0344210:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr3_1:2715891-2715910 Msa0344210:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + chr3_1:2714605-2714624 Msa0344210:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr3_1:2714610-2714629 Msa0344210:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr3_1:2714624-2714643 Msa0344210:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr3_1:2715125-2715144 Msa0344210:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr3_1:2715126-2715145 Msa0344210:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr3_1:2715132-2715151 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr3_1:2715133-2715152 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr3_1:2715200-2715219 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr3_1:2715249-2715268 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr3_1:2715318-2715337 Msa0344210:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr3_1:2715341-2715360 Msa0344210:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr3_1:2715342-2715361 Msa0344210:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr3_1:2715476-2715495 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr3_1:2715506-2715525 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr3_1:2715557-2715576 Msa0344210:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr3_1:2715631-2715650 Msa0344210:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr3_1:2715687-2715706 Msa0344210:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr3_1:2715696-2715715 Msa0344210:CDS 35.0%
ATAGGATTCCATTCAACTCA+TGG + chr3_1:2714605-2714624 Msa0344210:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr3_1:2714610-2714629 Msa0344210:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr3_1:2714624-2714643 Msa0344210:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr3_1:2715125-2715144 Msa0344210:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr3_1:2715126-2715145 Msa0344210:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr3_1:2715132-2715151 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr3_1:2715133-2715152 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr3_1:2715200-2715219 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr3_1:2715249-2715268 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr3_1:2715318-2715337 Msa0344210:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr3_1:2715341-2715360 Msa0344210:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr3_1:2715342-2715361 Msa0344210:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr3_1:2715476-2715495 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr3_1:2715506-2715525 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr3_1:2715557-2715576 Msa0344210:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr3_1:2715631-2715650 Msa0344210:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr3_1:2715687-2715706 Msa0344210:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr3_1:2715696-2715715 Msa0344210:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr3_1:2714403-2714422 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr3_1:2714424-2714443 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr3_1:2714609-2714628 Msa0344210:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr3_1:2714623-2714642 Msa0344210:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr3_1:2715068-2715087 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr3_1:2715073-2715092 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr3_1:2715216-2715235 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr3_1:2715218-2715237 Msa0344210:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr3_1:2715474-2715493 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr3_1:2715475-2715494 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr3_1:2715529-2715548 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr3_1:2715530-2715549 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr3_1:2715564-2715583 Msa0344210:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr3_1:2715608-2715627 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr3_1:2715730-2715749 Msa0344210:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr3_1:2715753-2715772 Msa0344210:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr3_1:2715754-2715773 Msa0344210:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr3_1:2715811-2715830 Msa0344210:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr3_1:2715868-2715887 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr3_1:2715876-2715895 Msa0344210:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr3_1:2714403-2714422 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr3_1:2714424-2714443 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr3_1:2714609-2714628 Msa0344210:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr3_1:2714623-2714642 Msa0344210:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr3_1:2715068-2715087 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr3_1:2715073-2715092 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr3_1:2715216-2715235 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr3_1:2715218-2715237 Msa0344210:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr3_1:2715474-2715493 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr3_1:2715475-2715494 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr3_1:2715529-2715548 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr3_1:2715530-2715549 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr3_1:2715564-2715583 Msa0344210:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr3_1:2715608-2715627 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr3_1:2715730-2715749 Msa0344210:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr3_1:2715753-2715772 Msa0344210:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr3_1:2715754-2715773 Msa0344210:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr3_1:2715811-2715830 Msa0344210:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr3_1:2715868-2715887 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr3_1:2715876-2715895 Msa0344210:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr3_1:2714616-2714635 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr3_1:2715067-2715086 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr3_1:2715153-2715172 Msa0344210:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr3_1:2715154-2715173 Msa0344210:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr3_1:2715175-2715194 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr3_1:2715565-2715584 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr3_1:2715563-2715582 Msa0344210:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr3_1:2715565-2715584 Msa0344210:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr3_1:2715607-2715626 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr3_1:2715751-2715770 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr3_1:2715757-2715776 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr3_1:2715805-2715824 Msa0344210:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr3_1:2715817-2715836 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr3_1:2715816-2715835 Msa0344210:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr3_1:2715817-2715836 Msa0344210:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr3_1:2715859-2715878 Msa0344210:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr3_1:2714616-2714635 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr3_1:2715067-2715086 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr3_1:2715153-2715172 Msa0344210:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr3_1:2715154-2715173 Msa0344210:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr3_1:2715175-2715194 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr3_1:2715565-2715584 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr3_1:2715563-2715582 Msa0344210:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr3_1:2715565-2715584 Msa0344210:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr3_1:2715607-2715626 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr3_1:2715751-2715770 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr3_1:2715757-2715776 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr3_1:2715805-2715824 Msa0344210:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr3_1:2715817-2715836 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr3_1:2715816-2715835 Msa0344210:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr3_1:2715817-2715836 Msa0344210:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr3_1:2715859-2715878 Msa0344210:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr3_1:2714831-2714850 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr3_1:2714831-2714850 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG - chr3_1:2715382-2715401 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr3_1:2715511-2715530 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr3_1:2715523-2715542 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr3_1:2715589-2715608 Msa0344210:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr3_1:2715700-2715719 Msa0344210:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr3_1:2715748-2715767 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr3_1:2715818-2715837 Msa0344210:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr3_1:2715382-2715401 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr3_1:2715511-2715530 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr3_1:2715523-2715542 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr3_1:2715589-2715608 Msa0344210:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr3_1:2715700-2715719 Msa0344210:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr3_1:2715748-2715767 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr3_1:2715818-2715837 Msa0344210:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr3_1:2715234-2715253 None:intergenic 55.0%
GAGGGGCAATTCAAACCCTC+TGG - chr3_1:2715360-2715379 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr3_1:2715377-2715396 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr3_1:2715378-2715397 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr3_1:2715379-2715398 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr3_1:2715590-2715609 Msa0344210:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr3_1:2715819-2715838 Msa0344210:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr3_1:2715234-2715253 None:intergenic 55.0%
GAGGGGCAATTCAAACCCTC+TGG - chr3_1:2715360-2715379 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr3_1:2715377-2715396 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr3_1:2715378-2715397 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr3_1:2715379-2715398 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr3_1:2715590-2715609 Msa0344210:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr3_1:2715819-2715838 Msa0344210:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr3_1:2715157-2715176 Msa0344210:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr3_1:2715162-2715181 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr3_1:2715461-2715480 Msa0344210:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr3_1:2715569-2715588 Msa0344210:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr3_1:2715570-2715589 Msa0344210:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr3_1:2715571-2715590 Msa0344210:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr3_1:2715157-2715176 Msa0344210:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr3_1:2715162-2715181 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr3_1:2715461-2715480 Msa0344210:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr3_1:2715569-2715588 Msa0344210:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr3_1:2715570-2715589 Msa0344210:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr3_1:2715571-2715590 Msa0344210:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr3_1:2715460-2715479 Msa0344210:CDS 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr3_1:2715460-2715479 Msa0344210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2714377 2715981 2714377 ID=Msa0344210;Name=Msa0344210
chr3_1 mRNA 2714377 2715981 2714377 ID=Msa0344210-mRNA-1;Parent=Msa0344210;Name=Msa0344210-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0|4|0|367
chr3_1 exon 2714377 2714557 2714377 ID=Msa0344210-mRNA-1:exon:879;Parent=Msa0344210-mRNA-1
chr3_1 exon 2714995 2715215 2714995 ID=Msa0344210-mRNA-1:exon:880;Parent=Msa0344210-mRNA-1
chr3_1 exon 2715228 2715363 2715228 ID=Msa0344210-mRNA-1:exon:881;Parent=Msa0344210-mRNA-1
chr3_1 exon 2715416 2715981 2715416 ID=Msa0344210-mRNA-1:exon:882;Parent=Msa0344210-mRNA-1
chr3_1 CDS 2714377 2714557 2714377 ID=Msa0344210-mRNA-1:cds;Parent=Msa0344210-mRNA-1
chr3_1 CDS 2714995 2715215 2714995 ID=Msa0344210-mRNA-1:cds;Parent=Msa0344210-mRNA-1
chr3_1 CDS 2715228 2715363 2715228 ID=Msa0344210-mRNA-1:cds;Parent=Msa0344210-mRNA-1
chr3_1 CDS 2715416 2715981 2715416 ID=Msa0344210-mRNA-1:cds;Parent=Msa0344210-mRNA-1
Gene Sequence

>Msa0344210

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa0344210

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*