AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091700 MtrunA17_CPg0492851 86.769 325 3 2 65 349 1 325 0.0 551
Msa1091700 MtrunA17_Chr4g0015731 86.769 325 3 2 65 349 1 325 0.0 551
Msa1091700 MtrunA17_Chr4g0016821 86.769 325 3 2 65 349 1 325 0.0 551
Msa1091700 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 7.89e-40 137
Msa1091700 MtrunA17_Chr4g0016991 95.385 65 3 0 285 349 1 65 2.20e-36 126
Msa1091700 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 3.37e-35 126
Msa1091700 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.66e-34 126
Msa1091700 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.66e-34 126
Msa1091700 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.75e-34 126
Msa1091700 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.60e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091700 ATCG00540.1 79.062 320 27 2 70 349 1 320 1.50e-176 493
Msa1091700 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.79e-18 83.6

Find 74 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 7_3:+7161430 Msa1091700:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 7_3:+7156137 Msa1091700:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 7_3:+7161415 Msa1091700:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 7_3:+7156138 Msa1091700:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 7_3:-7161338 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 7_3:-7156132 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 7_3:-7160735 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 7_3:+7161102 Msa1091700:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 7_3:+7161350 Msa1091700:CDS
GATCATGAGCAATACGAAAA+TGG 0.321657 7_3:-7160608 None:intergenic
AACTCATTATTCTTAACTCT+TGG 0.323937 7_3:+7156170 Msa1091700:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 7_3:+7161203 Msa1091700:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 7_3:+7161103 Msa1091700:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 7_3:-7161101 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 7_3:+7160832 Msa1091700:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 7_3:-7156060 None:intergenic
TCCTCTGAAACAAGAAGTTC+TGG 0.385448 7_3:-7161293 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 7_3:+7161355 Msa1091700:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 7_3:-7161353 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 7_3:-7160817 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 7_3:+7156171 Msa1091700:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 7_3:-7160650 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 7_3:+7161170 Msa1091700:CDS
AAATCGTATGGATACGGTCT+TGG 0.446811 7_3:-7156081 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 7_3:-7161143 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 7_3:+7156124 Msa1091700:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 7_3:-7156093 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 7_3:-7160784 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 7_3:-7160557 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 7_3:+7161226 Msa1091700:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 7_3:-7160785 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 7_3:-7160649 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 7_3:+7161398 Msa1091700:CDS
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 7_3:-7160697 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 7_3:+7161096 Msa1091700:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 7_3:+7161357 Msa1091700:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 7_3:-7161144 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 7_3:+7161356 Msa1091700:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 7_3:-7160919 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.534643 7_3:+7161292 Msa1091700:CDS
GAGCAATACGAAAATGGATC+GGG 0.540185 7_3:-7160602 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 7_3:+7156139 Msa1091700:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 7_3:-7161287 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 7_3:+7161110 Msa1091700:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 7_3:-7156087 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 7_3:-7161066 None:intergenic
TGAGCAATACGAAAATGGAT+CGG 0.554340 7_3:-7160603 None:intergenic
AAAATCCGAGAGAAGCTACC+GGG 0.554646 7_3:+7160692 Msa1091700:CDS
GTGATTGATATTATACCGCC+AGG 0.566218 7_3:+7161269 Msa1091700:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 7_3:-7161065 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 7_3:+7161340 Msa1091700:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 7_3:-7160895 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 7_3:+7161129 Msa1091700:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 7_3:+7161108 Msa1091700:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 7_3:+7161239 Msa1091700:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 7_3:-7161404 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 7_3:+7160691 Msa1091700:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 7_3:+7161358 Msa1091700:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 7_3:+7161095 Msa1091700:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 7_3:+7161092 Msa1091700:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 7_3:+7161344 Msa1091700:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 7_3:-7160916 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 7_3:-7160710 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 7_3:+7161235 Msa1091700:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 7_3:+7161104 Msa1091700:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 7_3:+7161109 Msa1091700:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 7_3:+7161341 Msa1091700:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 7_3:+7160756 Msa1091700:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 7_3:-7160915 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 7_3:-7160914 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 7_3:+7161128 Msa1091700:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 7_3:-7160769 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 7_3:-7161284 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 7_3:+7160695 Msa1091700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTATTTAGTTTTAAAAA+CGG + chr7_3:7158077-7158096 Msa1091700:intron 10.0%
!!! AATTTTTTTAAAGGATTTTT+TGG - chr7_3:7158774-7158793 None:intergenic 10.0%
!!! TTTTTTAGGAATTTTTTTAA+AGG - chr7_3:7158783-7158802 None:intergenic 10.0%
!!! TAATTTTCACATATTAAAAT+TGG + chr7_3:7158842-7158861 Msa1091700:intron 10.0%
!! TTAAAATTGGTTAAAAAATA+AGG + chr7_3:7158855-7158874 Msa1091700:intron 10.0%
!!! AAAAACAAAAAAACAATTTT+TGG + chr7_3:7159911-7159930 Msa1091700:intron 10.0%
!!! TTTTATTTTATTTGAATTGA+AGG - chr7_3:7159994-7160013 None:intergenic 10.0%
!! TACATAAATCAGTTAATAAA+AGG - chr7_3:7156246-7156265 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr7_3:7156247-7156266 Msa1091700:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr7_3:7156383-7156402 Msa1091700:intron 15.0%
!!! TTTAAAATGGATTTTTAACA+GGG - chr7_3:7156832-7156851 None:intergenic 15.0%
!!! TTTTAAAATGGATTTTTAAC+AGG - chr7_3:7156833-7156852 None:intergenic 15.0%
!! TGCAATTAACTAAAAAATAA+AGG - chr7_3:7157092-7157111 None:intergenic 15.0%
!! AATTCCTAAAAAATTCATAT+AGG + chr7_3:7158790-7158809 Msa1091700:intron 15.0%
!! ATAAGAAATAAGATGAATAT+GGG - chr7_3:7159386-7159405 None:intergenic 15.0%
!! TATAAGAAATAAGATGAATA+TGG - chr7_3:7159387-7159406 None:intergenic 15.0%
!! ATTTGATTAAGAAAATGAAA+AGG - chr7_3:7159756-7159775 None:intergenic 15.0%
!!! AATTGTTTTTTTGTTTTTGT+TGG - chr7_3:7159909-7159928 None:intergenic 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr7_3:7160520-7160539 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr7_3:7161203-7161222 Msa1091700:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr7_3:7161472-7161491 Msa1091700:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr7_3:7156376-7156395 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG - chr7_3:7156446-7156465 None:intergenic 20.0%
!!! AGAATTGAGTTAGTATTTTT+AGG - chr7_3:7156459-7156478 None:intergenic 20.0%
!! ATTTGCAAAATTCATGAAAA+AGG + chr7_3:7156553-7156572 Msa1091700:intron 20.0%
!! TTTGCAAAATTCATGAAAAA+GGG + chr7_3:7156554-7156573 Msa1091700:intron 20.0%
!!! ACTGAAAGAATTTTTAACAT+AGG - chr7_3:7156594-7156613 None:intergenic 20.0%
!!! TCTTTCAGTCTTTTAAAAAT+TGG + chr7_3:7156605-7156624 Msa1091700:intron 20.0%
!!! CTTTCAGTCTTTTAAAAATT+GGG + chr7_3:7156606-7156625 Msa1091700:intron 20.0%
!!! CTCAGATACAAATTTTAAAA+TGG - chr7_3:7156845-7156864 None:intergenic 20.0%
!! AACGATTAAAATTGACAAAA+CGG - chr7_3:7156977-7156996 None:intergenic 20.0%
!! AATTGGTAAAAAACGTAATT+TGG - chr7_3:7157017-7157036 None:intergenic 20.0%
!! TGCAAAAAAAATGACAAAAA+AGG - chr7_3:7157062-7157081 None:intergenic 20.0%
!!! TTTTATCAAGAATGGTAAAA+AGG - chr7_3:7158725-7158744 None:intergenic 20.0%
!!! ATTACTAGTTTTATCAAGAA+TGG - chr7_3:7158733-7158752 None:intergenic 20.0%
!! ATATTGTGTGTTAAAATTGA+TGG + chr7_3:7158902-7158921 Msa1091700:intron 20.0%
!! TATTGTGTGTTAAAATTGAT+GGG + chr7_3:7158903-7158922 Msa1091700:intron 20.0%
!! ATAAATGTTCATCAAGAAAT+TGG - chr7_3:7158948-7158967 None:intergenic 20.0%
!! TAAAACTCCATAAAAGTAAA+TGG - chr7_3:7158979-7158998 None:intergenic 20.0%
!!! AAATTTTGGAATAGGAATTT+AGG - chr7_3:7159134-7159153 None:intergenic 20.0%
!!! TTAGAATCAAATTTTGGAAT+AGG - chr7_3:7159142-7159161 None:intergenic 20.0%
!! ATATCAAAAGAAATAAAGCA+AGG - chr7_3:7159300-7159319 None:intergenic 20.0%
!!! CATCTTATTTCTTATACTTT+AGG + chr7_3:7159391-7159410 Msa1091700:intron 20.0%
!! AAATTAGAATGTAAAGACTT+AGG + chr7_3:7159424-7159443 Msa1091700:intron 20.0%
!! CATAAAAGTAACATATTACA+AGG - chr7_3:7159453-7159472 None:intergenic 20.0%
!!! TTCAAGTTTTTTTGGAAAAT+TGG - chr7_3:7159674-7159693 None:intergenic 20.0%
!! AATGAAAAGGAAAATTCAAT+GGG - chr7_3:7159743-7159762 None:intergenic 20.0%
!! AAATGAAAAGGAAAATTCAA+TGG - chr7_3:7159744-7159763 None:intergenic 20.0%
!!! TGAAAATGAATTTTGAAGAA+TGG - chr7_3:7159873-7159892 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG - chr7_3:7160231-7160250 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG + chr7_3:7160231-7160250 Msa1091700:intron 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr7_3:7160361-7160380 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr7_3:7160452-7160471 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr7_3:7160521-7160540 Msa1091700:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr7_3:7160938-7160957 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG - chr7_3:7160985-7161004 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr7_3:7160987-7161006 Msa1091700:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr7_3:7161092-7161111 Msa1091700:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr7_3:7156124-7156143 Msa1091700:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr7_3:7156135-7156154 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr7_3:7156137-7156156 Msa1091700:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr7_3:7156138-7156157 Msa1091700:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr7_3:7156170-7156189 Msa1091700:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr7_3:7156171-7156190 Msa1091700:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr7_3:7156334-7156353 Msa1091700:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr7_3:7156414-7156433 None:intergenic 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG - chr7_3:7156447-7156466 None:intergenic 25.0%
! ACTTATTCAAACTACTTGAA+AGG - chr7_3:7156638-7156657 None:intergenic 25.0%
!!! TTCAAATGCAATTTTTGAGA+TGG - chr7_3:7156685-7156704 None:intergenic 25.0%
!! AACTTTGTAACAAACTTTTC+TGG - chr7_3:7157171-7157190 None:intergenic 25.0%
! AATTCTGTATGAATTTGTGT+GGG - chr7_3:7157413-7157432 None:intergenic 25.0%
! AAATCAATGGTTAAAATTGC+AGG - chr7_3:7158340-7158359 None:intergenic 25.0%
! AGAATTGGTGGAAATTTATT+TGG - chr7_3:7158638-7158657 None:intergenic 25.0%
! TCAAGAAAGTTATCAAGAAT+TGG - chr7_3:7158653-7158672 None:intergenic 25.0%
!!! TCAAGTTTTATTATGCAACA+AGG - chr7_3:7158686-7158705 None:intergenic 25.0%
!!! GAAGCCTATATGAATTTTTT+AGG - chr7_3:7158797-7158816 None:intergenic 25.0%
!! AAAGGCTTAGAATCAAATTT+TGG - chr7_3:7159148-7159167 None:intergenic 25.0%
!! CTATTCCATCACATTTTTAA+AGG - chr7_3:7159166-7159185 None:intergenic 25.0%
!! CTTTAAAAATGTGATGGAAT+AGG + chr7_3:7159164-7159183 Msa1091700:intron 25.0%
! TAGAAATCAACACAAGATAA+AGG - chr7_3:7159257-7159276 None:intergenic 25.0%
! ATATGAGACATGAAATGAAA+TGG - chr7_3:7159339-7159358 None:intergenic 25.0%
! GTATGTTTAGATGAATGTTT+AGG + chr7_3:7159631-7159650 Msa1091700:intron 25.0%
!!! GAAGTTTGTTCAAGTTTTTT+TGG - chr7_3:7159682-7159701 None:intergenic 25.0%
!! ACCATTTTCAAAATAAACCT+TGG + chr7_3:7159708-7159727 Msa1091700:intron 25.0%
!! CCATTTTCAAAATAAACCTT+GGG + chr7_3:7159709-7159728 Msa1091700:intron 25.0%
!!! GTTTTTTCTAAGTGAAGAAT+TGG - chr7_3:7160039-7160058 None:intergenic 25.0%
! CTTCACTTAGAAAAAACTTT+AGG + chr7_3:7160042-7160061 Msa1091700:intron 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG - chr7_3:7160226-7160245 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG - chr7_3:7160227-7160246 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG - chr7_3:7160232-7160251 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr7_3:7160470-7160489 Msa1091700:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr7_3:7160475-7160494 Msa1091700:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr7_3:7160476-7160495 Msa1091700:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr7_3:7160516-7160535 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr7_3:7160533-7160552 Msa1091700:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr7_3:7160563-7160582 Msa1091700:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr7_3:7160570-7160589 Msa1091700:CDS 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr7_3:7160820-7160839 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr7_3:7160842-7160861 Msa1091700:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr7_3:7160937-7160956 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG - chr7_3:7160986-7161005 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG + chr7_3:7160983-7161002 Msa1091700:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr7_3:7161206-7161225 Msa1091700:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr7_3:7161445-7161464 Msa1091700:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - chr7_3:7156090-7156109 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr7_3:7156096-7156115 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + chr7_3:7156139-7156158 Msa1091700:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr7_3:7156368-7156387 None:intergenic 30.0%
TCCAAAATTAGGGTATAACA+CGG - chr7_3:7156436-7156455 None:intergenic 30.0%
TTGATCAGAGACATATCAAA+TGG - chr7_3:7156501-7156520 None:intergenic 30.0%
GAATTCTGTATGAATTTGTG+TGG - chr7_3:7157414-7157433 None:intergenic 30.0%
AATCTTGTTGCAATTGATTG+TGG - chr7_3:7157499-7157518 None:intergenic 30.0%
CAAATTCAACAAATTCGAAG+AGG + chr7_3:7157522-7157541 Msa1091700:intron 30.0%
CGAATCTGCAAAAATCAAAA+CGG + chr7_3:7157781-7157800 Msa1091700:intron 30.0%
TGCAAAAATCAAAACGGTTA+GGG + chr7_3:7157787-7157806 Msa1091700:intron 30.0%
TCTTACATAGATCGAATTGA+GGG - chr7_3:7157909-7157928 None:intergenic 30.0%
ATCTTACATAGATCGAATTG+AGG - chr7_3:7157910-7157929 None:intergenic 30.0%
CATAGCAGGTATAAATACAT+TGG - chr7_3:7158278-7158297 None:intergenic 30.0%
!! AAGAAATTTTGACATGCAAG+AGG - chr7_3:7158606-7158625 None:intergenic 30.0%
AGAAAGTTATCAAGAATTGG+TGG - chr7_3:7158650-7158669 None:intergenic 30.0%
GTTCATCAAGAAATTGGAAT+TGG - chr7_3:7158942-7158961 None:intergenic 30.0%
!! ACCTATGCCATTTACTTTTA+TGG + chr7_3:7158969-7158988 Msa1091700:intron 30.0%
TCCATAAAAGTAAATGGCAT+AGG - chr7_3:7158973-7158992 None:intergenic 30.0%
! TGCTGCATAATTGTGAATTT+TGG + chr7_3:7159020-7159039 Msa1091700:intron 30.0%
!! GCATAATTGTGAATTTTGGT+AGG + chr7_3:7159024-7159043 Msa1091700:intron 30.0%
! CTAAGCCTTTAAAAATGTGA+TGG + chr7_3:7159158-7159177 Msa1091700:intron 30.0%
TGATGGAATAGGAGAATTAT+AGG + chr7_3:7159175-7159194 Msa1091700:intron 30.0%
TAGGAGAATTATAGGTCATA+TGG + chr7_3:7159183-7159202 Msa1091700:intron 30.0%
ATGAAATGGTTAGTAACACA+TGG - chr7_3:7159325-7159344 None:intergenic 30.0%
AAGACCATAGAATGTATCTA+GGG + chr7_3:7159488-7159507 Msa1091700:intron 30.0%
! TTCTAGCTATATACCTAAAG+TGG - chr7_3:7159582-7159601 None:intergenic 30.0%
GCATGTTTAGATGTATGTTT+AGG + chr7_3:7159605-7159624 Msa1091700:intron 30.0%
!!! CCCAAGGTTTATTTTGAAAA+TGG - chr7_3:7159712-7159731 None:intergenic 30.0%
ATGAGATTTAGGAAATTGTG+AGG - chr7_3:7159829-7159848 None:intergenic 30.0%
!! CAATTTTTGGAAGAGAACTA+CGG + chr7_3:7159924-7159943 Msa1091700:intron 30.0%
TTTCTAAGTGAAGAATTGGA+GGG - chr7_3:7160035-7160054 None:intergenic 30.0%
! TTTTCTAAGTGAAGAATTGG+AGG - chr7_3:7160036-7160055 None:intergenic 30.0%
AAATTAAAGACGGTTCCTAT+AGG + chr7_3:7160113-7160132 Msa1091700:intron 30.0%
TAACGACTATAGTATCCTAT+AGG - chr7_3:7160131-7160150 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG + chr7_3:7160131-7160150 Msa1091700:intron 30.0%
TAGGATACTATAGTCGTTAT+GGG + chr7_3:7160132-7160151 Msa1091700:intron 30.0%
! TAAGATATCACCGGTTAAAA+AGG + chr7_3:7160240-7160259 Msa1091700:intron 30.0%
! TACGTTTGAACCTTTTTAAC+CGG - chr7_3:7160253-7160272 None:intergenic 30.0%
!! AGTGTTTTATCTTGGTTTTC+GGG - chr7_3:7160290-7160309 None:intergenic 30.0%
!! GAGTGTTTTATCTTGGTTTT+CGG - chr7_3:7160291-7160310 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr7_3:7160313-7160332 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr7_3:7160439-7160458 Msa1091700:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr7_3:7160509-7160528 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr7_3:7160560-7160579 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr7_3:7160652-7160671 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr7_3:7160653-7160672 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr7_3:7160744-7160763 Msa1091700:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr7_3:7160788-7160807 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr7_3:7160832-7160851 Msa1091700:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr7_3:7160841-7160860 Msa1091700:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr7_3:7160843-7160862 Msa1091700:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr7_3:7160934-7160953 Msa1091700:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr7_3:7161020-7161039 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr7_3:7161095-7161114 Msa1091700:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr7_3:7161341-7161360 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr7_3:7161340-7161359 Msa1091700:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr7_3:7161341-7161360 Msa1091700:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr7_3:7161430-7161449 Msa1091700:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + chr7_3:7156265-7156284 Msa1091700:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr7_3:7156270-7156289 Msa1091700:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr7_3:7156284-7156303 Msa1091700:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + chr7_3:7156304-7156323 Msa1091700:intron 35.0%
! TCCGTGTTATACCCTAATTT+TGG + chr7_3:7156432-7156451 Msa1091700:intron 35.0%
AAAAGACTAAAATGCCCCTA+GGG - chr7_3:7156729-7156748 None:intergenic 35.0%
GGTCATTTCACACGAAATTT+CGG + chr7_3:7156899-7156918 Msa1091700:intron 35.0%
AAGTACCTCATTTAAGCCAT+TGG + chr7_3:7156940-7156959 Msa1091700:intron 35.0%
ATAGCTGATGTGTAAATTCC+TGG - chr7_3:7157220-7157239 None:intergenic 35.0%
! AGCTATAAAAGCTGACTCAA+TGG + chr7_3:7157234-7157253 Msa1091700:intron 35.0%
TCGTGTTCTTGTGAAATTCT+GGG - chr7_3:7157341-7157360 None:intergenic 35.0%
ATCGTGTTCTTGTGAAATTC+TGG - chr7_3:7157342-7157361 None:intergenic 35.0%
ATTTCACAAGAACACGATGA+AGG + chr7_3:7157344-7157363 Msa1091700:intron 35.0%
!!! GGTGAAATTTTGCTGTTGAA+TGG - chr7_3:7157450-7157469 None:intergenic 35.0%
CTGCAAAAATCAAAACGGTT+AGG + chr7_3:7157786-7157805 Msa1091700:intron 35.0%
GATCTAAAGATGTAAAGGCT+TGG - chr7_3:7157986-7158005 None:intergenic 35.0%
CGCTAGATCTAAAGATGTAA+AGG - chr7_3:7157991-7158010 None:intergenic 35.0%
CTTTAGATCTAGCGAAATCT+AGG + chr7_3:7157997-7158016 Msa1091700:intron 35.0%
AGAAGTGATGTGTGTTTATG+TGG + chr7_3:7158240-7158259 Msa1091700:intron 35.0%
TACATCAGAAGGGAAATCAA+TGG - chr7_3:7158353-7158372 None:intergenic 35.0%
AGCACACAATAAGATACATC+AGG - chr7_3:7158408-7158427 None:intergenic 35.0%
GCAATATCAAACACAAACAG+TGG - chr7_3:7159003-7159022 None:intergenic 35.0%
GAATAGGAATTTAGGCAACA+TGG - chr7_3:7159126-7159145 None:intergenic 35.0%
AGATGAATATGGGATGAAGT+GGG - chr7_3:7159376-7159395 None:intergenic 35.0%
AAGATGAATATGGGATGAAG+TGG - chr7_3:7159377-7159396 None:intergenic 35.0%
CAAGACCATAGAATGTATCT+AGG + chr7_3:7159487-7159506 Msa1091700:intron 35.0%
! ATCTAGGGCATGATGTAATA+AGG + chr7_3:7159503-7159522 Msa1091700:intron 35.0%
GCATGATGTAATAAGGACAA+TGG + chr7_3:7159510-7159529 Msa1091700:intron 35.0%
TTTGAAGAATGGAGATTGAG+AGG - chr7_3:7159862-7159881 None:intergenic 35.0%
TGAGCAATACGAAAATGGAT+CGG - chr7_3:7160606-7160625 None:intergenic 35.0%
GATCATGAGCAATACGAAAA+TGG - chr7_3:7160611-7160630 None:intergenic 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr7_3:7160663-7160682 Msa1091700:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr7_3:7160664-7160683 Msa1091700:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr7_3:7160670-7160689 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr7_3:7160671-7160690 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr7_3:7160738-7160757 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr7_3:7160787-7160806 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr7_3:7160856-7160875 Msa1091700:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr7_3:7160879-7160898 Msa1091700:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr7_3:7160880-7160899 Msa1091700:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr7_3:7160891-7160910 Msa1091700:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr7_3:7161015-7161034 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr7_3:7161045-7161064 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr7_3:7161096-7161115 Msa1091700:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr7_3:7161170-7161189 Msa1091700:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr7_3:7161226-7161245 Msa1091700:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr7_3:7161235-7161254 Msa1091700:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr7_3:7156063-7156082 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr7_3:7156084-7156103 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr7_3:7156269-7156288 Msa1091700:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr7_3:7156283-7156302 Msa1091700:intron 40.0%
AAAGACTAAAATGCCCCTAG+GGG - chr7_3:7156728-7156747 None:intergenic 40.0%
GAAAAGACTAAAATGCCCCT+AGG - chr7_3:7156730-7156749 None:intergenic 40.0%
AACCAACTTGAAAGACTCAG+AGG - chr7_3:7156787-7156806 None:intergenic 40.0%
!! TTTTAGTCGTTTTAGCCCCA+AGG + chr7_3:7156869-7156888 Msa1091700:intron 40.0%
!! TTTAGTCGTTTTAGCCCCAA+GGG + chr7_3:7156870-7156889 Msa1091700:intron 40.0%
AAATGACCAAAATGCCCTTG+GGG - chr7_3:7156887-7156906 None:intergenic 40.0%
GAAATGACCAAAATGCCCTT+GGG - chr7_3:7156888-7156907 None:intergenic 40.0%
TGAAATGACCAAAATGCCCT+TGG - chr7_3:7156889-7156908 None:intergenic 40.0%
ACGAACCAATGGCTTAAATG+AGG - chr7_3:7156948-7156967 None:intergenic 40.0%
!! AACGGACTAAAACGAACCAA+TGG - chr7_3:7156959-7156978 None:intergenic 40.0%
TGACTCAATGGTCAAAGTCA+AGG + chr7_3:7157246-7157265 Msa1091700:intron 40.0%
!! TTGAGTTGGCAGAAAGTGAA+TGG - chr7_3:7157276-7157295 None:intergenic 40.0%
! ACGTGATTGTGTTGTTGAGT+TGG - chr7_3:7157290-7157309 None:intergenic 40.0%
TTTCTCTCTCCCAGATCAAA+AGG + chr7_3:7157309-7157328 Msa1091700:intron 40.0%
! GGGTTTGATCCTTTTGATCT+GGG - chr7_3:7157321-7157340 None:intergenic 40.0%
! TGGGTTTGATCCTTTTGATC+TGG - chr7_3:7157322-7157341 None:intergenic 40.0%
! GTGTTGTTGAGAAACGGTTA+GGG - chr7_3:7157387-7157406 None:intergenic 40.0%
! TGTGTTGTTGAGAAACGGTT+AGG - chr7_3:7157388-7157407 None:intergenic 40.0%
! GGGATTGTGTTGTTGAGAAA+CGG - chr7_3:7157393-7157412 None:intergenic 40.0%
!! AGACTGTTCGATTCGTTTTC+TGG - chr7_3:7157471-7157490 None:intergenic 40.0%
! GTTCGATGATGATGATTCCT+TGG - chr7_3:7157562-7157581 None:intergenic 40.0%
TGCTAGAATTGCAGAGACTA+TGG - chr7_3:7157584-7157603 None:intergenic 40.0%
CGCGTGATTCATCATTTCAA+TGG - chr7_3:7157616-7157635 None:intergenic 40.0%
! ACACTTGATTCGAAACCCTA+GGG - chr7_3:7157750-7157769 None:intergenic 40.0%
! AACACTTGATTCGAAACCCT+AGG - chr7_3:7157751-7157770 None:intergenic 40.0%
!! GGTTTCGAATCAAGTGTTGA+AGG + chr7_3:7157753-7157772 Msa1091700:intron 40.0%
ATAGATCGAATTGAGGGATG+AGG - chr7_3:7157903-7157922 None:intergenic 40.0%
TCACAAACGAAGCAACATCA+CGG - chr7_3:7157954-7157973 None:intergenic 40.0%
GAATGTTTGAGTGCCAGAAA+TGG + chr7_3:7158028-7158047 Msa1091700:intron 40.0%
! TCCTCTCTTGTTTCCATTTC+TGG - chr7_3:7158044-7158063 None:intergenic 40.0%
AGAAATGGAAACAAGAGAGG+AGG + chr7_3:7158043-7158062 Msa1091700:intron 40.0%
GGAGGAAGATGAAGATTCAT+CGG - chr7_3:7158131-7158150 None:intergenic 40.0%
ACGGTCTAGATTGTGTGTTA+AGG + chr7_3:7158378-7158397 Msa1091700:intron 40.0%
GGCAAAATGAGTGCAAAACA+TGG - chr7_3:7159236-7159255 None:intergenic 40.0%
CATGCCCTAGATACATTCTA+TGG - chr7_3:7159495-7159514 None:intergenic 40.0%
!! TCAATGGGATTTTGATCCCA+AGG - chr7_3:7159728-7159747 None:intergenic 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG + chr7_3:7159927-7159946 Msa1091700:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG + chr7_3:7159945-7159964 Msa1091700:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG + chr7_3:7159946-7159965 Msa1091700:intron 40.0%
ACGCGCGTAGAAATTAAAGA+CGG + chr7_3:7160103-7160122 Msa1091700:intron 40.0%
!! AGTGACGGAGTGTTTTATCT+TGG - chr7_3:7160298-7160317 None:intergenic 40.0%
GAGCAATACGAAAATGGATC+GGG - chr7_3:7160605-7160624 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr7_3:7160754-7160773 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr7_3:7160756-7160775 Msa1091700:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr7_3:7161013-7161032 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr7_3:7161014-7161033 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr7_3:7161068-7161087 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr7_3:7161069-7161088 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr7_3:7161103-7161122 Msa1091700:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr7_3:7161147-7161166 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr7_3:7161269-7161288 Msa1091700:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr7_3:7161292-7161311 Msa1091700:CDS 40.0%
!! TCCTCTGAAACAAGAAGTTC+TGG - chr7_3:7161296-7161315 None:intergenic 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr7_3:7161350-7161369 Msa1091700:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr7_3:7161407-7161426 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr7_3:7161415-7161434 Msa1091700:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr7_3:7156276-7156295 None:intergenic 45.0%
! TTGAGTCAGTTTTGCCCCTA+GGG + chr7_3:7156711-7156730 Msa1091700:intron 45.0%
! TGCCTCTGAGTCTTTCAAGT+TGG + chr7_3:7156782-7156801 Msa1091700:intron 45.0%
!!! TTTTAGCCCCAAGGGCATTT+TGG + chr7_3:7156878-7156897 Msa1091700:intron 45.0%
TAAGACACTGACACGTGTAC+TGG - chr7_3:7157143-7157162 None:intergenic 45.0%
ACCAATATGAGCGTGACATG+TGG - chr7_3:7157197-7157216 None:intergenic 45.0%
GATTCGAAACCCTAGGGTTT+CGG - chr7_3:7157744-7157763 None:intergenic 45.0%
TAGGGTTCGAACTTCTTCAG+AGG + chr7_3:7157805-7157824 Msa1091700:intron 45.0%
AGAATCTCTCAATCCTCGTC+AGG + chr7_3:7157844-7157863 Msa1091700:intron 45.0%
TCGAATTGAGGGATGAGGAA+CGG - chr7_3:7157898-7157917 None:intergenic 45.0%
! GATGTAAAGGCTTGGCTCTT+AGG - chr7_3:7157978-7157997 None:intergenic 45.0%
GCCAGAAATGGAAACAAGAG+AGG + chr7_3:7158040-7158059 Msa1091700:intron 45.0%
TAAAAACGGCGTCAGATCGT+CGG + chr7_3:7158091-7158110 Msa1091700:intron 45.0%
TGCCTTCTCTCTAGGTTTAG+AGG - chr7_3:7158200-7158219 None:intergenic 45.0%
TCCCTTCTGATGTACGTGTA+CGG + chr7_3:7158359-7158378 Msa1091700:intron 45.0%
ACCGTACACGTACATCAGAA+GGG - chr7_3:7158363-7158382 None:intergenic 45.0%
CATTGCTAACCGTCAGATCT+AGG + chr7_3:7158431-7158450 Msa1091700:intron 45.0%
ATGGATCCTGGATCATCCAT+TGG - chr7_3:7158494-7158513 None:intergenic 45.0%
CAGGATCCATCAAAGACCAT+GGG + chr7_3:7158504-7158523 Msa1091700:intron 45.0%
AATCCAGCAAAAAGAGACCC+AGG - chr7_3:7158530-7158549 None:intergenic 45.0%
! GGTGTAAAAAGCATGCAACG+TGG - chr7_3:7158585-7158604 None:intergenic 45.0%
ACATGCACACACACCACTTT+AGG + chr7_3:7159566-7159585 Msa1091700:intron 45.0%
TCCTAAATCTCATGCCCTTG+AGG + chr7_3:7159836-7159855 Msa1091700:intron 45.0%
TTGCCTACGTACCCGTTTAA+GGG - chr7_3:7159960-7159979 None:intergenic 45.0%
AGCAAAACCCTTGAGAATCG+AGG - chr7_3:7160195-7160214 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr7_3:7160691-7160710 Msa1091700:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr7_3:7160692-7160711 Msa1091700:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr7_3:7160713-7160732 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr7_3:7161104-7161123 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr7_3:7161102-7161121 Msa1091700:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr7_3:7161104-7161123 Msa1091700:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr7_3:7161146-7161165 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr7_3:7161290-7161309 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr7_3:7161344-7161363 Msa1091700:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr7_3:7161356-7161375 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr7_3:7161355-7161374 Msa1091700:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr7_3:7161356-7161375 Msa1091700:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr7_3:7161398-7161417 Msa1091700:CDS 45.0%
!! AAAGTAATTAATAATAAAAT+TGG - chr7_3:7157034-7157053 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr7_3:7160369-7160388 None:intergenic 5.0%
! CTTGAGTCAGTTTTGCCCCT+AGG + chr7_3:7156710-7156729 Msa1091700:intron 50.0%
! TGAGTCAGTTTTGCCCCTAG+GGG + chr7_3:7156712-7156731 Msa1091700:intron 50.0%
CACGAAATTTCGGCAGAGAG+AGG + chr7_3:7156909-7156928 Msa1091700:intron 50.0%
GGACTGTGACTGGGACAAAA+AGG - chr7_3:7157122-7157141 None:intergenic 50.0%
ACGTGTACTGGACTGTGACT+GGG - chr7_3:7157131-7157150 None:intergenic 50.0%
GCCACATGTCACGCTCATAT+TGG + chr7_3:7157193-7157212 Msa1091700:intron 50.0%
TGTCACGCTCATATTGGTCC+AGG + chr7_3:7157199-7157218 Msa1091700:intron 50.0%
AGGTTCTCAGAGATTCGCCA+AGG + chr7_3:7157542-7157561 Msa1091700:intron 50.0%
ATCACGCGATCACAGAGAAG+AGG + chr7_3:7157628-7157647 Msa1091700:intron 50.0%
CACAGAGAAGAGGTGAGAAG+AGG + chr7_3:7157638-7157657 Msa1091700:intron 50.0%
AGAGAAGAGGTGAGAAGAGG+AGG + chr7_3:7157641-7157660 Msa1091700:intron 50.0%
GAGAAGAGGTGAGAAGAGGA+GGG + chr7_3:7157642-7157661 Msa1091700:intron 50.0%
!! GGTTTCGGATTGGCTCGAAT+TGG - chr7_3:7157729-7157748 None:intergenic 50.0%
GAAACCCTAGGGTTTCGGAT+TGG - chr7_3:7157739-7157758 None:intergenic 50.0%
CAGCGATTGAATTCCTGACG+AGG - chr7_3:7157860-7157879 None:intergenic 50.0%
TCAATCGCTGCGAACTGTTC+AGG + chr7_3:7157870-7157889 Msa1091700:intron 50.0%
TTGCCGGAAACTGGAAACAG+AGG - chr7_3:7158175-7158194 None:intergenic 50.0%
TCTGTTTCCAGTTTCCGGCA+AGG + chr7_3:7158174-7158193 Msa1091700:intron 50.0%
TCTAGGTTTAGAGGCCTTGC+CGG - chr7_3:7158191-7158210 None:intergenic 50.0%
GGCCTCTAAACCTAGAGAGA+AGG + chr7_3:7158195-7158214 Msa1091700:intron 50.0%
AAACGCTCTGCCTTCTCTCT+AGG - chr7_3:7158208-7158227 None:intergenic 50.0%
AATTGCAGGAGCTCAGCGAA+AGG - chr7_3:7158326-7158345 None:intergenic 50.0%
GACCGTACACGTACATCAGA+AGG - chr7_3:7158364-7158383 None:intergenic 50.0%
CACGCTTGACCTAGATCTGA+CGG - chr7_3:7158443-7158462 None:intergenic 50.0%
GTGGACCTGGATCAATCCAA+AGG + chr7_3:7158460-7158479 Msa1091700:intron 50.0%
CACAGCCTTTGGATTGATCC+AGG - chr7_3:7158468-7158487 None:intergenic 50.0%
TCCAAAGGCTGTGAAGCCAA+TGG + chr7_3:7158475-7158494 Msa1091700:intron 50.0%
!! TCCATTGGCTTCACAGCCTT+TGG - chr7_3:7158479-7158498 None:intergenic 50.0%
GTGAAGCCAATGGATGATCC+AGG + chr7_3:7158485-7158504 Msa1091700:intron 50.0%
! CCATGGTCTTTGATGGATCC+TGG - chr7_3:7158506-7158525 None:intergenic 50.0%
CCAGGATCCATCAAAGACCA+TGG + chr7_3:7158503-7158522 Msa1091700:intron 50.0%
AGTGGTGTGTGTGCATGTGT+CGG - chr7_3:7159564-7159583 None:intergenic 50.0%
! GCCTCAAGGGCATGAGATTT+AGG - chr7_3:7159840-7159859 None:intergenic 50.0%
TGGAGATTGAGAGGCCTCAA+GGG - chr7_3:7159853-7159872 None:intergenic 50.0%
ATGGAGATTGAGAGGCCTCA+AGG - chr7_3:7159854-7159873 None:intergenic 50.0%
GATCCCTTAAACGGGTACGT+AGG + chr7_3:7159954-7159973 Msa1091700:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG - chr7_3:7159961-7159980 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG + chr7_3:7159959-7159978 Msa1091700:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG - chr7_3:7160160-7160179 None:intergenic 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG - chr7_3:7160167-7160186 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - chr7_3:7160172-7160191 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG - chr7_3:7160190-7160209 None:intergenic 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr7_3:7160922-7160941 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr7_3:7161050-7161069 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr7_3:7161062-7161081 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr7_3:7161128-7161147 Msa1091700:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr7_3:7161239-7161258 Msa1091700:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr7_3:7161287-7161306 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr7_3:7161357-7161376 Msa1091700:CDS 50.0%
CACGTGTACTGGACTGTGAC+TGG - chr7_3:7157132-7157151 None:intergenic 55.0%
GAGGTGAGAAGAGGAGGGAT+CGG + chr7_3:7157647-7157666 Msa1091700:intron 55.0%
TCGAGCCAATCCGAAACCCT+AGG + chr7_3:7157731-7157750 Msa1091700:intron 55.0%
CGAGCCAATCCGAAACCCTA+GGG + chr7_3:7157732-7157751 Msa1091700:intron 55.0%
GAAACTGGAAACAGAGGCGG+AGG - chr7_3:7158169-7158188 None:intergenic 55.0%
CCGGAAACTGGAAACAGAGG+CGG - chr7_3:7158172-7158191 None:intergenic 55.0%
CCGCCTCTGTTTCCAGTTTC+CGG + chr7_3:7158169-7158188 Msa1091700:intron 55.0%
TTAGAGGCCTTGCCGGAAAC+TGG - chr7_3:7158184-7158203 None:intergenic 55.0%
CGTCAGATCTAGGTCAAGCG+TGG + chr7_3:7158441-7158460 Msa1091700:intron 55.0%
ATCTAGGTCAAGCGTGGACC+TGG + chr7_3:7158447-7158466 Msa1091700:intron 55.0%
TCCATCAAAGACCATGGGCC+TGG + chr7_3:7158509-7158528 Msa1091700:intron 55.0%
CCATCAAAGACCATGGGCCT+GGG + chr7_3:7158510-7158529 Msa1091700:intron 55.0%
CAAAAAGAGACCCAGGCCCA+TGG - chr7_3:7158523-7158542 None:intergenic 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG - chr7_3:7159552-7159571 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - chr7_3:7160171-7160190 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + chr7_3:7160168-7160187 Msa1091700:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG + chr7_3:7160185-7160204 Msa1091700:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - chr7_3:7160189-7160208 None:intergenic 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr7_3:7160772-7160791 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr7_3:7160898-7160917 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr7_3:7160917-7160936 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr7_3:7160918-7160937 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr7_3:7160919-7160938 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr7_3:7161129-7161148 Msa1091700:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr7_3:7161358-7161377 Msa1091700:CDS 55.0%
CTGGAAACAGAGGCGGAGGA+CGG - chr7_3:7158165-7158184 None:intergenic 60.0%
CCCAGGCCCATGGTCTTTGA+TGG - chr7_3:7158513-7158532 None:intergenic 60.0%
! GGGCCTGGGTCTCTTTTTGC+TGG + chr7_3:7158524-7158543 Msa1091700:intron 60.0%
CTCCCGGACCTCGATTCTCA+AGG + chr7_3:7160184-7160203 Msa1091700:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr7_3:7160695-7160714 Msa1091700:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr7_3:7160700-7160719 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr7_3:7161000-7161019 Msa1091700:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr7_3:7161108-7161127 Msa1091700:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr7_3:7161109-7161128 Msa1091700:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr7_3:7161110-7161129 Msa1091700:CDS 60.0%
AGGCGGAGGACGGTGGTTGA+CGG - chr7_3:7158155-7158174 None:intergenic 65.0%
GAAACAGAGGCGGAGGACGG+TGG - chr7_3:7158162-7158181 None:intergenic 65.0%
CGCGCGCGTGTGATCATAGC+AGG - chr7_3:7158292-7158311 None:intergenic 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr7_3:7160999-7161018 Msa1091700:intron 65.0%
AGGACGGTGGTTGACGGCGG+AGG - chr7_3:7158149-7158168 None:intergenic 70.0%
CGGAGGACGGTGGTTGACGG+CGG - chr7_3:7158152-7158171 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 7156037 7161520 7156037 ID=Msa1091700;Name=Msa1091700
chr7_3 mRNA 7156037 7161520 7156037 ID=Msa1091700-mRNA-1;Parent=Msa1091700;Name=Msa1091700-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.33|0.25|4|0|349
chr7_3 exon 7156037 7156217 7156037 ID=Msa1091700-mRNA-1:exon:2226;Parent=Msa1091700-mRNA-1
chr7_3 exon 7160533 7160753 7160533 ID=Msa1091700-mRNA-1:exon:2227;Parent=Msa1091700-mRNA-1
chr7_3 exon 7160766 7160955 7160766 ID=Msa1091700-mRNA-1:exon:2228;Parent=Msa1091700-mRNA-1
chr7_3 exon 7161063 7161520 7161063 ID=Msa1091700-mRNA-1:exon:2229;Parent=Msa1091700-mRNA-1
chr7_3 CDS 7156037 7156217 7156037 ID=Msa1091700-mRNA-1:cds;Parent=Msa1091700-mRNA-1
chr7_3 CDS 7160533 7160753 7160533 ID=Msa1091700-mRNA-1:cds;Parent=Msa1091700-mRNA-1
chr7_3 CDS 7160766 7160955 7160766 ID=Msa1091700-mRNA-1:cds;Parent=Msa1091700-mRNA-1
chr7_3 CDS 7161063 7161520 7161063 ID=Msa1091700-mRNA-1:cds;Parent=Msa1091700-mRNA-1
Gene Sequence

>Msa1091700

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTTCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGATGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1091700

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSIFVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEDESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*