AlfalfaGEDB | Msa0344260

M. sativa cultivar zhongmu-4 / Msa0344260

KEGG: K02640
GO: -
PFAM: PF02529.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344260	RHN40522.1	100.000	37	0	0	1	37	35	71	2.42e-16	74.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344260	sp\|A4QLL3\|PETG_LOBMA	100.000	36	0	0	1	36	1	36	1.69e-18	72.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344260	A0A0K0LTM7	100.000	37	0	0	1	37	1	37	1.71e-16	73.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa0344260	0.845664	3.525965e-59	-8.615850e-47
Msa0002690	Msa0344260	0.835770	1.383136e-56	-8.615850e-47
Msa0002700	Msa0344260	0.836642	8.302312e-57	-8.615850e-47
Msa0004180	Msa0344260	0.814986	1.164963e-51	-8.615850e-47
Msa0005500	Msa0344260	0.825226	5.260145e-54	-8.615850e-47
Msa0007810	Msa0344260	0.810154	1.326971e-50	-8.615850e-47
Msa0011100	Msa0344260	0.803616	3.202730e-49	-8.615850e-47
Msa0011410	Msa0344260	0.843188	1.634000e-58	-8.615850e-47
Msa0011440	Msa0344260	0.840895	6.601393e-58	-8.615850e-47
Msa0011450	Msa0344260	0.825225	5.263875e-54	-8.615850e-47

Showing 1 to 10 of 709 entries

Previous1 2 3 4 5…71Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344260	MtrunA17_Chr8g0355631	100.000	37	1	37	35	71	2.22e-20	74.7
Msa0344260	MtrunA17_Chr4g0015761	100.000	37	1	37	35	71	2.56e-20	74.7
Msa0344260	MtrunA17_CPg0492811	100.000	37	1	37	35	71	2.56e-20	74.7
Msa0344260	MtrunA17_Chr4g0016861	100.000	35	1	35	1	35	9.96e-19	70.1

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344260	ATCG00600.1	97.222	36	1	0	1	36	1	36	2.23e-18	69.3

Showing 1 to 1 of 1 entries

Previous1Next

Find 14 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCAATCATTTGAGTT+TGG	0.328054	3_1:+2738375	None:intergenic
AATAATCCAGCCAAAGTAAT+AGG	0.315680	3_1:+2738323	None:intergenic
AATTGGCAATTGACATGATA+AGG	0.448909	3_1:+2738474	None:intergenic
AGGTCTAATTCCTATTACTT+TGG	0.388074	3_1:-2738333	Msa0344260:CDS
ATATCGACGTGGTGATCAGT+TGG	0.572503	3_1:-2738282	Msa0344260:CDS
ATCATTTGAGTTTGGTTGAA+AGG	0.406278	3_1:+2738383	None:intergenic
ATGATTGAAGTTTCTCTATT+TGG	0.115333	3_1:-2738365	Msa0344260:CDS
CTAATTCCTATTACTTTGGC+TGG	0.352028	3_1:-2738329	Msa0344260:CDS
GAATCTCAATGACCAAGAAT+TGG	0.414372	3_1:+2738457	None:intergenic
GCATATTTACAATATCGACG+TGG	0.789819	3_1:-2738293	Msa0344260:CDS

Showing 1 to 10 of 14 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTGGCAATTGACATGATA+AGG	+	chr3_1:2738282-2738301	None:intergenic	30.0%
TCAATACAGATTCCTATTGA+AGG	-	chr3_1:2738323-2738342	Msa0344260:CDS	30.0%
GGTAATATCTATCCTTCAAT+AGG	+	chr3_1:2738338-2738357	None:intergenic	30.0%
TGGTTGAAAGGAAAAAAAGT+GGG	+	chr3_1:2738361-2738380	None:intergenic	30.0%
TTGGTTGAAAGGAAAAAAAG+TGG	+	chr3_1:2738362-2738381	None:intergenic	30.0%
AGGTCTAATTCCTATTACTT+TGG	-	chr3_1:2738420-2738439	Msa0344260:intron	30.0%
AATAATCCAGCCAAAGTAAT+AGG	+	chr3_1:2738433-2738452	None:intergenic	30.0%
TTTGGCTGGATTATTTGTAA+CGG	-	chr3_1:2738438-2738457	Msa0344260:intron	30.0%
TCATGTCAATTGCCAATTCT+TGG	-	chr3_1:2738284-2738303	Msa0344260:CDS	35.0%
GAATCTCAATGACCAAGAAT+TGG	+	chr3_1:2738299-2738318	None:intergenic	35.0%

Showing 1 to 10 of 20 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	2738277	2738498	2738277	ID=Msa0344260;Name=Msa0344260
chr3_1	mRNA	2738277	2738498	2738277	ID=Msa0344260-mRNA-1;Parent=Msa0344260;Name=Msa0344260-mRNA-1;_AED=0.41;_eAED=0.67;_QI=83\|0\|0\|1\|0\|0\|2\|0\|37
chr3_1	exon	2738454	2738498	2738454	ID=Msa0344260-mRNA-1:exon:896;Parent=Msa0344260-mRNA-1
chr3_1	exon	2738277	2738425	2738277	ID=Msa0344260-mRNA-1:exon:895;Parent=Msa0344260-mRNA-1
chr3_1	five_prime_UTR	2738454	2738498	2738454	ID=Msa0344260-mRNA-1:five_prime_utr;Parent=Msa0344260-mRNA-1
chr3_1	five_prime_UTR	2738388	2738425	2738388	ID=Msa0344260-mRNA-1:five_prime_utr;Parent=Msa0344260-mRNA-1
chr3_1	CDS	2738277	2738387	2738277	ID=Msa0344260-mRNA-1:cds;Parent=Msa0344260-mRNA-1

Gene Sequence	>Msa0344260 ATGATTGAAGTTTCTCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACGGCATATTTACAATATCGACGTGGTGATCAGTTGGATATT
Protein sequence	>Msa0344260 MIEVSLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDI