Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122250 | XP_003624978.2 | 93.655 | 394 | 24 | 1 | 1 | 393 | 1 | 394 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122250 | sp|Q6NLB1|FB118_ARATH | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.52e-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122250 | Q2HSY4 | 93.655 | 394 | 24 | 1 | 1 | 393 | 1 | 394 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1122250 | 0.803040 | 4.214278e-49 | -8.615850e-47 |
| Msa0017510 | Msa1122250 | 0.826626 | 2.447173e-54 | -8.615850e-47 |
| Msa0031340 | Msa1122250 | 0.804864 | 1.759958e-49 | -8.615850e-47 |
| Msa0657970 | Msa1122250 | 0.803464 | 3.442498e-49 | -8.615850e-47 |
| Msa0661870 | Msa1122250 | 0.801661 | 8.104245e-49 | -8.615850e-47 |
| Msa0663240 | Msa1122250 | 0.800605 | 1.332485e-48 | -8.615850e-47 |
| Msa0688480 | Msa1122250 | 0.812102 | 5.019743e-51 | -8.615850e-47 |
| Msa0696640 | Msa1122250 | 0.800237 | 1.583262e-48 | -8.615850e-47 |
| Msa0703050 | Msa1122250 | 0.809714 | 1.650790e-50 | -8.615850e-47 |
| Msa0801760 | Msa1122250 | 0.812045 | 5.165097e-51 | -8.615850e-47 |
| Msa0832370 | Msa1122250 | 0.802791 | 4.744956e-49 | -8.615850e-47 |
| Msa0122590 | Msa1122250 | 0.817187 | 3.755203e-52 | -8.615850e-47 |
| Msa0140780 | Msa1122250 | 0.804857 | 1.765826e-49 | -8.615850e-47 |
| Msa0157290 | Msa1122250 | 0.826049 | 3.356434e-54 | -8.615850e-47 |
| Msa0195770 | Msa1122250 | 0.810000 | 1.432387e-50 | -8.615850e-47 |
| Msa0200260 | Msa1122250 | 0.822032 | 2.942833e-53 | -8.615850e-47 |
| Msa0201070 | Msa1122250 | 0.811241 | 7.724553e-51 | -8.615850e-47 |
| Msa0210450 | Msa1122250 | 0.808719 | 2.697206e-50 | -8.615850e-47 |
| Msa0215320 | Msa1122250 | -0.803156 | 3.986912e-49 | -8.615850e-47 |
| Msa0220580 | Msa1122250 | 0.812835 | 3.470432e-51 | -8.615850e-47 |
| Msa0221060 | Msa1122250 | 0.801575 | 8.438472e-49 | -8.615850e-47 |
| Msa0226250 | Msa1122250 | 0.808438 | 3.097307e-50 | -8.615850e-47 |
| Msa0376590 | Msa1122250 | 0.813558 | 2.408485e-51 | -8.615850e-47 |
| Msa0388960 | Msa1122250 | 0.809800 | 1.582235e-50 | -8.615850e-47 |
| Msa0417270 | Msa1122250 | 0.814312 | 1.642817e-51 | -8.615850e-47 |
| Msa0442850 | Msa1122250 | 0.812924 | 3.318422e-51 | -8.615850e-47 |
| Msa1052830 | Msa1122250 | 0.815737 | 7.928923e-52 | -8.615850e-47 |
| Msa1059570 | Msa1122250 | 0.800826 | 1.201224e-48 | -8.615850e-47 |
| Msa1068200 | Msa1122250 | -0.815764 | 7.820864e-52 | -8.615850e-47 |
| Msa1075220 | Msa1122250 | -0.824979 | 6.019188e-54 | -8.615850e-47 |
| Msa1077390 | Msa1122250 | 0.808093 | 3.668469e-50 | -8.615850e-47 |
| Msa1082500 | Msa1122250 | 0.811453 | 6.948698e-51 | -8.615850e-47 |
| Msa0243100 | Msa1122250 | 0.832473 | 9.263943e-56 | -8.615850e-47 |
| Msa0243710 | Msa1122250 | 0.805151 | 1.533197e-49 | -8.615850e-47 |
| Msa0257460 | Msa1122250 | 0.800273 | 1.556823e-48 | -8.615850e-47 |
| Msa0274360 | Msa1122250 | 0.805864 | 1.086333e-49 | -8.615850e-47 |
| Msa0287650 | Msa1122250 | 0.809000 | 2.348336e-50 | -8.615850e-47 |
| Msa0294950 | Msa1122250 | 0.801423 | 9.070015e-49 | -8.615850e-47 |
| Msa0294960 | Msa1122250 | 0.800306 | 1.533502e-48 | -8.615850e-47 |
| Msa0332000 | Msa1122250 | 0.802302 | 5.982794e-49 | -8.615850e-47 |
| Msa0338110 | Msa1122250 | 0.804872 | 1.753742e-49 | -8.615850e-47 |
| Msa1117660 | Msa1122250 | 0.802196 | 6.291283e-49 | -8.615850e-47 |
| Msa1122250 | Msa1139000 | -0.801321 | 9.513559e-49 | -8.615850e-47 |
| Msa1122250 | Msa1143270 | 0.801082 | 1.065038e-48 | -8.615850e-47 |
| Msa1122250 | Msa1156340 | -0.802127 | 6.501039e-49 | -8.615850e-47 |
| Msa1122250 | Msa1160670 | 0.846918 | 1.605593e-59 | -8.615850e-47 |
| Msa1122250 | Msa1162550 | -0.822881 | 1.868233e-53 | -8.615850e-47 |
| Msa1122250 | Msa1171910 | 0.816298 | 5.942156e-52 | -8.615850e-47 |
| Msa1122250 | Msa1172670 | 0.807001 | 6.254053e-50 | -8.615850e-47 |
| Msa1122250 | Msa1186550 | 0.801303 | 9.597973e-49 | -8.615850e-47 |
| Msa1122250 | Msa1222970 | 0.804464 | 2.133716e-49 | -8.615850e-47 |
| Msa1122250 | Msa1233890 | 0.828901 | 6.946603e-55 | -8.615850e-47 |
| Msa1122250 | Msa1267220 | 0.810015 | 1.422240e-50 | -8.615850e-47 |
| Msa1122250 | Msa1283860 | 0.824247 | 8.949665e-54 | -8.615850e-47 |
| Msa1122250 | Msa1284710 | 0.805010 | 1.640600e-49 | -8.615850e-47 |
| Msa1122250 | Msa1288420 | 0.800060 | 1.720187e-48 | -8.615850e-47 |
| Msa1122250 | Msa1312560 | 0.804212 | 2.407362e-49 | -8.615850e-47 |
| Msa1122250 | Msa1313150 | 0.806365 | 8.521989e-50 | -8.615850e-47 |
| Msa1122250 | Msa1318990 | 0.801976 | 6.983614e-49 | -8.615850e-47 |
| Msa1122250 | Msa1322860 | 0.811644 | 6.316077e-51 | -8.615850e-47 |
| Msa1122250 | Msa1327050 | 0.804113 | 2.524424e-49 | -8.615850e-47 |
| Msa1122250 | Msa1367080 | 0.804629 | 1.970880e-49 | -8.615850e-47 |
| Msa1122250 | Msa1374550 | 0.801580 | 8.420919e-49 | -8.615850e-47 |
| Msa1122250 | Msa1411020 | 0.822207 | 2.680783e-53 | -8.615850e-47 |
| Msa1122250 | Msa1423880 | 0.816400 | 5.639525e-52 | -8.615850e-47 |
| Msa1122250 | Msa1424290 | 0.817176 | 3.776496e-52 | -8.615850e-47 |
| Msa1122250 | Msa1434350 | 0.816752 | 4.703004e-52 | -8.615850e-47 |
| Msa1122250 | Msa1439320 | 0.821399 | 4.121243e-53 | -8.615850e-47 |
| Msa1122250 | Msa1447090 | 0.810550 | 1.090019e-50 | -8.615850e-47 |
| Msa1122250 | Msa1454120 | 0.806833 | 6.788381e-50 | -8.615850e-47 |
| Msa0489100 | Msa1122250 | 0.809130 | 2.202835e-50 | -8.615850e-47 |
| Msa0516370 | Msa1122250 | 0.813651 | 2.298031e-51 | -8.615850e-47 |
| Msa0548280 | Msa1122250 | -0.807881 | 4.069138e-50 | -8.615850e-47 |
| Msa0576880 | Msa1122250 | 0.800363 | 1.492897e-48 | -8.615850e-47 |
| Msa0581760 | Msa1122250 | 0.800781 | 1.226746e-48 | -8.615850e-47 |
| Msa0871400 | Msa1122250 | 0.800807 | 1.211742e-48 | -8.615850e-47 |
| Msa0880140 | Msa1122250 | 0.824358 | 8.429460e-54 | -8.615850e-47 |
| Msa0908050 | Msa1122250 | 0.815890 | 7.332807e-52 | -8.615850e-47 |
| Msa0933230 | Msa1122250 | 0.808848 | 2.531583e-50 | -8.615850e-47 |
| Msa0936270 | Msa1122250 | 0.816642 | 4.978263e-52 | -8.615850e-47 |
| Msa0954130 | Msa1122250 | 0.807561 | 4.760437e-50 | -8.615850e-47 |
| Msa0954550 | Msa1122250 | 0.813171 | 2.930005e-51 | -8.615850e-47 |
| Msa0954920 | Msa1122250 | 0.803768 | 2.978050e-49 | -8.615850e-47 |
| Msa0969520 | Msa1122250 | 0.802882 | 4.542662e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122250 | MtrunA17_Chr7g0256121 | 93.655 | 394 | 24 | 1 | 1 | 393 | 1 | 394 | 0.0 | 735 |
| Msa1122250 | MtrunA17_Chr5g0441461 | 53.659 | 369 | 156 | 4 | 39 | 393 | 32 | 399 | 1.36e-141 | 408 |
| Msa1122250 | MtrunA17_Chr3g0094081 | 57.738 | 336 | 133 | 4 | 66 | 393 | 41 | 375 | 1.88e-138 | 399 |
| Msa1122250 | MtrunA17_Chr7g0256131 | 43.506 | 308 | 161 | 5 | 82 | 386 | 9 | 306 | 3.25e-84 | 259 |
| Msa1122250 | MtrunA17_Chr7g0256161 | 44.785 | 326 | 144 | 8 | 88 | 386 | 11 | 327 | 2.28e-82 | 255 |
| Msa1122250 | MtrunA17_Chr7g0256061 | 85.211 | 142 | 20 | 1 | 1 | 141 | 1 | 142 | 4.68e-67 | 209 |
| Msa1122250 | MtrunA17_Chr7g0256141 | 37.576 | 330 | 182 | 10 | 66 | 391 | 2 | 311 | 3.87e-58 | 192 |
| Msa1122250 | MtrunA17_Chr6g0465451 | 38.535 | 314 | 171 | 8 | 86 | 391 | 18 | 317 | 2.96e-56 | 187 |
| Msa1122250 | MtrunA17_Chr7g0256151 | 39.781 | 274 | 149 | 7 | 66 | 334 | 1 | 263 | 3.55e-55 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122250 | AT2G26850.1 | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.56e-142 | 409 |
| Msa1122250 | AT2G32560.1 | 53.239 | 355 | 152 | 4 | 45 | 393 | 25 | 371 | 2.00e-135 | 392 |
| Msa1122250 | AT2G41170.1 | 50.142 | 351 | 164 | 4 | 52 | 393 | 23 | 371 | 4.40e-113 | 335 |
| Msa1122250 | AT2G41170.2 | 47.887 | 355 | 142 | 4 | 81 | 393 | 51 | 404 | 1.95e-106 | 319 |
| Msa1122250 | AT2G32560.2 | 51.203 | 291 | 129 | 3 | 45 | 329 | 25 | 308 | 6.63e-104 | 310 |
| Msa1122250 | AT2G26850.2 | 52.239 | 268 | 114 | 5 | 45 | 306 | 25 | 284 | 1.15e-89 | 273 |
| Msa1122250 | AT2G41170.3 | 53.782 | 238 | 97 | 3 | 81 | 307 | 51 | 286 | 8.20e-75 | 235 |
Find 87 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAGGAAAACATAAAA+TGG | 0.213796 | 7_3:+72604292 | Msa1122250:CDS |
| ACAATACTTGCTTTCCTTCA+TGG | 0.246700 | 7_3:+72603526 | Msa1122250:CDS |
| TGAATTCTTCTCTATGCTTT+TGG | 0.274166 | 7_3:-72603482 | None:intergenic |
| GGTGACAGATACAGTGATTT+TGG | 0.287163 | 7_3:+72604891 | Msa1122250:intron |
| GATGTAGAAGTGATTATTTA+TGG | 0.288645 | 7_3:+72603383 | Msa1122250:CDS |
| TGAGAGTGGTTTATTTATAA+AGG | 0.303379 | 7_3:-72603071 | None:intergenic |
| CACAAGTGTGCAAATCTCTT+AGG | 0.319042 | 7_3:+72603356 | Msa1122250:CDS |
| TGTACCACTATATAAGCAAT+AGG | 0.354652 | 7_3:+72605257 | Msa1122250:three_prime_UTR |
| GCAATTACAAAACAAGAGTT+TGG | 0.359351 | 7_3:+72603216 | Msa1122250:CDS |
| CATACACACATTTCTTCTCT+TGG | 0.361851 | 7_3:+72602751 | Msa1122250:five_prime_UTR |
| CTAAGGAGACAAAAGATATA+AGG | 0.364386 | 7_3:-72603030 | None:intergenic |
| GTATAGTGTCATTGGTCATT+TGG | 0.367045 | 7_3:+72604732 | Msa1122250:CDS |
| AATAAACCACTCTCATCAAA+TGG | 0.367496 | 7_3:+72603079 | Msa1122250:CDS |
| CTTTATCTTTCTCTTGAGAA+TGG | 0.369439 | 7_3:+72603625 | Msa1122250:CDS |
| CATTGCCAATGTCACAATAA+AGG | 0.376211 | 7_3:+72604778 | Msa1122250:CDS |
| TTCAATTTAGACCTATAGTT+AGG | 0.379578 | 7_3:-72605195 | None:intergenic |
| GAACAAGGAAATGAAATAGA+AGG | 0.401759 | 7_3:+72604979 | Msa1122250:CDS |
| ATGTAGAAGTGATTATTTAT+GGG | 0.401802 | 7_3:+72603384 | Msa1122250:CDS |
| TTACCTCACGGTTATAAACT+TGG | 0.402760 | 7_3:-72603666 | None:intergenic |
| CACTAGTCTCATCTTCCATT+TGG | 0.409758 | 7_3:+72602915 | Msa1122250:five_prime_UTR |
| TAGTCTCATCTTCCATTTGG+TGG | 0.423555 | 7_3:+72602918 | Msa1122250:five_prime_UTR |
| GGAGAGGATCATATATCAAA+AGG | 0.429006 | 7_3:-72602989 | None:intergenic |
| TGAAGAGAAAGCTTCTCTCT+TGG | 0.434156 | 7_3:+72603267 | Msa1122250:CDS |
| TGCTTAGATGACTTAAGGCC+TGG | 0.434332 | 7_3:+72604372 | Msa1122250:CDS |
| AGAAACATATGAAGATGAAA+TGG | 0.438111 | 7_3:+72603407 | Msa1122250:CDS |
| AGGATGTAAAACATTGTGAT+TGG | 0.444191 | 7_3:-72603010 | None:intergenic |
| GGGACAAAACTTGTGTCAAA+TGG | 0.445386 | 7_3:+72603100 | Msa1122250:CDS |
| AGAAACAAGGAGTTCCCTTA+TGG | 0.448940 | 7_3:+72604420 | Msa1122250:CDS |
| TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | 7_3:+72605043 | Msa1122250:CDS |
| CTGACTGCTTAGATGACTTA+AGG | 0.460389 | 7_3:+72604367 | Msa1122250:CDS |
| CAAGAGAAGAAATGTGTGTA+TGG | 0.467521 | 7_3:-72602750 | None:intergenic |
| GAAACATATGAAGATGAAAT+GGG | 0.469405 | 7_3:+72603408 | Msa1122250:CDS |
| TTTGATTTAATCCAAAAGAA+AGG | 0.469457 | 7_3:-72603556 | None:intergenic |
| GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | 7_3:+72604724 | Msa1122250:intron |
| AGAGCAGCAATTGAGTCATC+TGG | 0.473004 | 7_3:-72603604 | None:intergenic |
| TCTTACCTTTATTGTGACAT+TGG | 0.477470 | 7_3:-72604783 | None:intergenic |
| AACTGAGGAAAACATAAAAT+GGG | 0.478038 | 7_3:+72604293 | Msa1122250:CDS |
| ACAAGTGTGCAAATCTCTTA+GGG | 0.485793 | 7_3:+72603357 | Msa1122250:CDS |
| ACATGTGAAGAAGAGTCAAT+AGG | 0.486449 | 7_3:-72604333 | None:intergenic |
| TTGCACATACCTTGCTTGAA+AGG | 0.487955 | 7_3:-72603897 | None:intergenic |
| TCACGGTTATAAACTTGGGC+AGG | 0.488493 | 7_3:-72603661 | None:intergenic |
| GGAAGATGAGACTAGTGGTT+TGG | 0.491381 | 7_3:-72602909 | None:intergenic |
| ATACCCTATTGCTTATATAG+TGG | 0.495105 | 7_3:-72605261 | None:intergenic |
| AGAAATGTGTGTATGGTTAG+TGG | 0.496124 | 7_3:-72602743 | None:intergenic |
| TGAATTTCAACATGATCTCC+AGG | 0.504590 | 7_3:-72604390 | None:intergenic |
| CTTTATTGTGACATTGGCAA+TGG | 0.507841 | 7_3:-72604777 | None:intergenic |
| GGATTTGCATGATTTACCAT+TGG | 0.508970 | 7_3:+72603288 | Msa1122250:CDS |
| TGAAAACAAGATCCACCAAA+TGG | 0.511917 | 7_3:-72602930 | None:intergenic |
| TTGGAAACATGTCAAGGTGA+TGG | 0.516906 | 7_3:+72604751 | Msa1122250:CDS |
| TGTCACTCATTCCTAACTAT+AGG | 0.520822 | 7_3:+72605184 | Msa1122250:three_prime_UTR |
| TGGAAACATGTCAAGGTGAT+GGG | 0.523680 | 7_3:+72604752 | Msa1122250:CDS |
| ATAAACCACTCTCATCAAAT+GGG | 0.527986 | 7_3:+72603080 | Msa1122250:CDS |
| TACCTCACGGTTATAAACTT+GGG | 0.540506 | 7_3:-72603665 | None:intergenic |
| GTGATTCTGCTTATAGACAA+TGG | 0.546392 | 7_3:+72603443 | Msa1122250:CDS |
| GTACCACTATATAAGCAATA+GGG | 0.546629 | 7_3:+72605258 | Msa1122250:three_prime_UTR |
| TAGTGGTTTGGCAAAACCAA+TGG | 0.549645 | 7_3:-72602897 | None:intergenic |
| TTTGTCCCATTTGATGAGAG+TGG | 0.551906 | 7_3:-72603085 | None:intergenic |
| GAGAGGATCATATATCAAAA+GGG | 0.556400 | 7_3:-72602988 | None:intergenic |
| GAGTTCACACAATACACAGC+TGG | 0.557018 | 7_3:+72604913 | Msa1122250:CDS |
| TAGGATGAGACATACCATAA+GGG | 0.559882 | 7_3:-72604434 | None:intergenic |
| GGTACTCACCTCATGGGAGA+TGG | 0.562172 | 7_3:+72604268 | Msa1122250:intron |
| ATGTGAATGTAAAGGCATGA+AGG | 0.563778 | 7_3:+72605139 | Msa1122250:three_prime_UTR |
| AATACACAGCTGGCTCAAGA+TGG | 0.566869 | 7_3:+72604923 | Msa1122250:CDS |
| GAGATCATGTTGAAATTCAG+TGG | 0.569671 | 7_3:+72604394 | Msa1122250:CDS |
| TTGGCATCAAAATTTGAGCA+TGG | 0.572122 | 7_3:+72603235 | Msa1122250:CDS |
| AGGAAAACATAAAATGGGAA+AGG | 0.579315 | 7_3:+72604298 | Msa1122250:CDS |
| GCCACATTGCGTAATTCACT+AGG | 0.583205 | 7_3:-72603334 | None:intergenic |
| AGAAAGGAAGAAAACCATGA+AGG | 0.585722 | 7_3:-72603540 | None:intergenic |
| AGTGGAAGGCAGCTGTTGTG+TGG | 0.605759 | 7_3:-72602725 | None:intergenic |
| CACGGTTATAAACTTGGGCA+GGG | 0.616974 | 7_3:-72603660 | None:intergenic |
| GGTCATTTGGAAACATGTCA+AGG | 0.617542 | 7_3:+72604745 | Msa1122250:CDS |
| GAACAGATACCTTTCAAGCA+AGG | 0.623387 | 7_3:+72603888 | Msa1122250:CDS |
| AATCAGAAAGTTGCATAGCA+AGG | 0.629679 | 7_3:+72605014 | Msa1122250:CDS |
| GCATACAAGACAATGCTAAG+TGG | 0.630540 | 7_3:+72606633 | Msa1122250:three_prime_UTR |
| ACCTAGTGAATTACGCAATG+TGG | 0.637424 | 7_3:+72603333 | Msa1122250:CDS |
| AATTCAGTGGAGAAGAAACA+AGG | 0.638341 | 7_3:+72604407 | Msa1122250:CDS |
| TCAGTTGTCCATCTCCCATG+AGG | 0.638779 | 7_3:-72604276 | None:intergenic |
| GTAAAACATTGTGATTGGAG+AGG | 0.652234 | 7_3:-72603005 | None:intergenic |
| AAACATATGAAGATGAAATG+GGG | 0.657925 | 7_3:+72603409 | Msa1122250:CDS |
| CTGACAGGTACTCACCTCAT+GGG | 0.663695 | 7_3:+72604262 | Msa1122250:intron |
| CAGAAAGTTGCATAGCAAGG+AGG | 0.668496 | 7_3:+72605017 | Msa1122250:CDS |
| GCAAGGAGGAGATTACAAAG+TGG | 0.681205 | 7_3:+72605031 | Msa1122250:CDS |
| ATGTGTGTATGGTTAGTGGA+AGG | 0.694796 | 7_3:-72602739 | None:intergenic |
| TGTGAAGAAGAGTCAATAGG+TGG | 0.697492 | 7_3:-72604330 | None:intergenic |
| TGCCCAAGTTTATAACCGTG+AGG | 0.709466 | 7_3:+72603663 | Msa1122250:CDS |
| CAAATGGAAGATGAGACTAG+TGG | 0.727460 | 7_3:-72602914 | None:intergenic |
| TCATGGGAGATGGACAACTG+AGG | 0.731418 | 7_3:+72604278 | Msa1122250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATACTAATTTTAAAATCA+GGG | - | chr7_3:72603739-72603758 | None:intergenic | 10.0% |
| !!! | TTAATACTAATTTTAAAATC+AGG | - | chr7_3:72603740-72603759 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATGTTTTGTTAT+AGG | + | chr7_3:72604703-72604722 | Msa1122250:intron | 10.0% |
| !!! | TATTTATAAAGGATTTTGAA+AGG | - | chr7_3:72603063-72603082 | None:intergenic | 15.0% |
| !!! | AATATTTTGTCTTGTAATTA+AGG | + | chr7_3:72603762-72603781 | Msa1122250:intron | 15.0% |
| !!! | ATATTTTGTCTTGTAATTAA+GGG | + | chr7_3:72603763-72603782 | Msa1122250:intron | 15.0% |
| !!! | TCAATAGTTTAACATTTTAT+AGG | + | chr7_3:72604192-72604211 | Msa1122250:intron | 15.0% |
| !!! | TTGATAATAGTTAATATTCT+AGG | - | chr7_3:72604565-72604584 | None:intergenic | 15.0% |
| !! | ATACAATAACATAATTTAAG+GGG | - | chr7_3:72604846-72604865 | None:intergenic | 15.0% |
| !! | GATACAATAACATAATTTAA+GGG | - | chr7_3:72604847-72604866 | None:intergenic | 15.0% |
| !! | AGATACAATAACATAATTTA+AGG | - | chr7_3:72604848-72604867 | None:intergenic | 15.0% |
| !! | CTAAATTGAAAAATTTACAT+TGG | + | chr7_3:72605208-72605227 | Msa1122250:three_prime_UTR | 15.0% |
| !!! | ATTTCAATATTTTCTATTTG+AGG | - | chr7_3:72605703-72605722 | None:intergenic | 15.0% |
| !!! | GTACTCAATATAATATATTT+TGG | - | chr7_3:72606166-72606185 | None:intergenic | 15.0% |
| !!! | AAAATATTTTAGCAAAACTT+GGG | + | chr7_3:72606255-72606274 | Msa1122250:intron | 15.0% |
| !! | ATGTAGAAGTGATTATTTAT+GGG | + | chr7_3:72603384-72603403 | Msa1122250:CDS | 20.0% |
| !!! | TTTGATTTAATCCAAAAGAA+AGG | - | chr7_3:72603559-72603578 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACATTTTCAGAA+TGG | + | chr7_3:72603812-72603831 | Msa1122250:intron | 20.0% |
| !!! | AATTAAACCAAAAGTACAAT+AGG | - | chr7_3:72603982-72604001 | None:intergenic | 20.0% |
| !! | AATAACCTATGAAATACTAA+AGG | + | chr7_3:72604012-72604031 | Msa1122250:intron | 20.0% |
| !! | TTATGTCAGTAGATAAATAA+AGG | + | chr7_3:72604525-72604544 | Msa1122250:intron | 20.0% |
| !!! | AAAAATGTTTTGTTATAGGT+TGG | + | chr7_3:72604707-72604726 | Msa1122250:intron | 20.0% |
| !! | TACAATAACATAATTTAAGG+GGG | - | chr7_3:72604845-72604864 | None:intergenic | 20.0% |
| !! | GATGATTAAATCAATAATGT+TGG | + | chr7_3:72604870-72604889 | Msa1122250:intron | 20.0% |
| !!! | AATGAAATAGAAGGTTTTTA+TGG | + | chr7_3:72604988-72605007 | Msa1122250:CDS | 20.0% |
| !!! | ATGAAATAGAAGGTTTTTAT+GGG | + | chr7_3:72604989-72605008 | Msa1122250:CDS | 20.0% |
| !!! | TAACGCAATCTATAATATTT+TGG | - | chr7_3:72606234-72606253 | None:intergenic | 20.0% |
| !!! | CAAAATATTTTAGCAAAACT+TGG | + | chr7_3:72606254-72606273 | Msa1122250:intron | 20.0% |
| !!! | AAATATTTTAGCAAAACTTG+GGG | + | chr7_3:72606256-72606275 | Msa1122250:intron | 20.0% |
| !! | ATTAGTAGTGTTTATATAGT+GGG | - | chr7_3:72606408-72606427 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGGATCATAACTA+AGG | - | chr7_3:72603050-72603069 | None:intergenic | 25.0% |
| ! | TGAGAGTGGTTTATTTATAA+AGG | - | chr7_3:72603074-72603093 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAATACAATCCAA+TGG | - | chr7_3:72603307-72603326 | None:intergenic | 25.0% |
| ! | GATGTAGAAGTGATTATTTA+TGG | + | chr7_3:72603383-72603402 | Msa1122250:CDS | 25.0% |
| ! | AGAAACATATGAAGATGAAA+TGG | + | chr7_3:72603407-72603426 | Msa1122250:CDS | 25.0% |
| ! | GAAACATATGAAGATGAAAT+GGG | + | chr7_3:72603408-72603427 | Msa1122250:CDS | 25.0% |
| ! | AAACATATGAAGATGAAATG+GGG | + | chr7_3:72603409-72603428 | Msa1122250:CDS | 25.0% |
| ! | CATTCAATATTGTTGAGTTT+AGG | + | chr7_3:72603929-72603948 | Msa1122250:intron | 25.0% |
| ! | AACTGAGGAAAACATAAAAT+GGG | + | chr7_3:72604293-72604312 | Msa1122250:CDS | 25.0% |
| ! | TATCAATGTTTGTGATAGAT+TGG | + | chr7_3:72604579-72604598 | Msa1122250:intron | 25.0% |
| ! | ACAATAACATAATTTAAGGG+GGG | - | chr7_3:72604844-72604863 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAGAGAACA+AGG | + | chr7_3:72604964-72604983 | Msa1122250:CDS | 25.0% |
| !! | TGAAATAGAAGGTTTTTATG+GGG | + | chr7_3:72604990-72605009 | Msa1122250:CDS | 25.0% |
| !!! | TGCTATTCAACATTTTTTGT+TGG | - | chr7_3:72605069-72605088 | None:intergenic | 25.0% |
| ! | TTCCAAAAATGTGAATGTAA+AGG | + | chr7_3:72605131-72605150 | Msa1122250:three_prime_UTR | 25.0% |
| ! | TTCAATTTAGACCTATAGTT+AGG | - | chr7_3:72605198-72605217 | None:intergenic | 25.0% |
| !!! | GTATATGTTACTGTTGTTTT+TGG | + | chr7_3:72605280-72605299 | Msa1122250:intron | 25.0% |
| ! | CTTTGGTAGATAATAGAATT+TGG | - | chr7_3:72605331-72605350 | None:intergenic | 25.0% |
| ! | GTAACAATACCATATTAAAG+TGG | - | chr7_3:72605562-72605581 | None:intergenic | 25.0% |
| !! | TTGATACTTTGGAGAAATTA+AGG | - | chr7_3:72605637-72605656 | None:intergenic | 25.0% |
| !! | ATTTCTCCAAAGTATCAATA+TGG | + | chr7_3:72605639-72605658 | Msa1122250:intron | 25.0% |
| !! | ATTTTCTATTTGAGGAGAAA+TGG | - | chr7_3:72605695-72605714 | None:intergenic | 25.0% |
| ! | GGAATTAAGAATGATCTTAA+CGG | - | chr7_3:72605738-72605757 | None:intergenic | 25.0% |
| ! | GACATTGTTTATTCCAAATA+GGG | + | chr7_3:72605763-72605782 | Msa1122250:intron | 25.0% |
| !!! | AAAAGTACTTTTTATTCCGA+AGG | + | chr7_3:72605797-72605816 | Msa1122250:intron | 25.0% |
| !!! | AAAGTACTTTTTATTCCGAA+GGG | + | chr7_3:72605798-72605817 | Msa1122250:intron | 25.0% |
| !!! | GCTTGATCTGAAATATATTT+TGG | - | chr7_3:72606210-72606229 | None:intergenic | 25.0% |
| ! | TTAGTAGTGTTTATATAGTG+GGG | - | chr7_3:72606407-72606426 | None:intergenic | 25.0% |
| ! | CATTAGTAGTGTTTATATAG+TGG | - | chr7_3:72606409-72606428 | None:intergenic | 25.0% |
| ! | AAAGAAAATACAGTAACTGT+TGG | - | chr7_3:72606543-72606562 | None:intergenic | 25.0% |
| !!! | TGTTTGTTTTGTAAGCTTGT+CGG | + | chr7_3:72602838-72602857 | Msa1122250:five_prime_UTR | 30.0% |
| GAGAGGATCATATATCAAAA+GGG | - | chr7_3:72602991-72603010 | None:intergenic | 30.0% | |
| AGGATGTAAAACATTGTGAT+TGG | - | chr7_3:72603013-72603032 | None:intergenic | 30.0% | |
| CTAAGGAGACAAAAGATATA+AGG | - | chr7_3:72603033-72603052 | None:intergenic | 30.0% | |
| AATAAACCACTCTCATCAAA+TGG | + | chr7_3:72603079-72603098 | Msa1122250:CDS | 30.0% | |
| ATAAACCACTCTCATCAAAT+GGG | + | chr7_3:72603080-72603099 | Msa1122250:CDS | 30.0% | |
| !!! | TTTTAAGTTTCCTAGCTTCT+AGG | + | chr7_3:72603137-72603156 | Msa1122250:CDS | 30.0% |
| GCAATTACAAAACAAGAGTT+TGG | + | chr7_3:72603216-72603235 | Msa1122250:CDS | 30.0% | |
| ! | TGAATTCTTCTCTATGCTTT+TGG | - | chr7_3:72603485-72603504 | None:intergenic | 30.0% |
| ! | ATGGTTTTCTTCCTTTCTTT+TGG | + | chr7_3:72603545-72603564 | Msa1122250:CDS | 30.0% |
| CAGAAAAACACATAAAGTCA+AGG | + | chr7_3:72603581-72603600 | Msa1122250:CDS | 30.0% | |
| CTTTATCTTTCTCTTGAGAA+TGG | + | chr7_3:72603625-72603644 | Msa1122250:CDS | 30.0% | |
| ! | CTCTTGAGAATGGAAATTTT+TGG | + | chr7_3:72603635-72603654 | Msa1122250:CDS | 30.0% |
| GGTATCCTTTAGTATTTCAT+AGG | - | chr7_3:72604020-72604039 | None:intergenic | 30.0% | |
| CAACTGAGGAAAACATAAAA+TGG | + | chr7_3:72604292-72604311 | Msa1122250:CDS | 30.0% | |
| AGGAAAACATAAAATGGGAA+AGG | + | chr7_3:72604298-72604317 | Msa1122250:CDS | 30.0% | |
| TTAGATATTGCACAACTACT+AGG | - | chr7_3:72604456-72604475 | None:intergenic | 30.0% | |
| TTTATGCGACTATTTAGAAG+AGG | - | chr7_3:72604502-72604521 | None:intergenic | 30.0% | |
| GTCAGTAGATAAATAAAGGT+CGG | + | chr7_3:72604529-72604548 | Msa1122250:intron | 30.0% | |
| !! | AATGTTTTGTTATAGGTTGG+TGG | + | chr7_3:72604710-72604729 | Msa1122250:intron | 30.0% |
| TCTTACCTTTATTGTGACAT+TGG | - | chr7_3:72604786-72604805 | None:intergenic | 30.0% | |
| AGAATTAAAATGTGTGCTAG+TGG | - | chr7_3:72604813-72604832 | None:intergenic | 30.0% | |
| GAACAAGGAAATGAAATAGA+AGG | + | chr7_3:72604979-72604998 | Msa1122250:CDS | 30.0% | |
| ! | GAAATAGAAGGTTTTTATGG+GGG | + | chr7_3:72604991-72605010 | Msa1122250:CDS | 30.0% |
| TTACAAAGTGGAAGAAACTT+TGG | + | chr7_3:72605043-72605062 | Msa1122250:CDS | 30.0% | |
| ! | TGCCTTTACATTCACATTTT+TGG | - | chr7_3:72605136-72605155 | None:intergenic | 30.0% |
| TGTACCACTATATAAGCAAT+AGG | + | chr7_3:72605257-72605276 | Msa1122250:three_prime_UTR | 30.0% | |
| GTACCACTATATAAGCAATA+GGG | + | chr7_3:72605258-72605277 | Msa1122250:three_prime_UTR | 30.0% | |
| ATACCCTATTGCTTATATAG+TGG | - | chr7_3:72605264-72605283 | None:intergenic | 30.0% | |
| GGATTTCCATACTGTTTATT+TGG | + | chr7_3:72605301-72605320 | Msa1122250:intron | 30.0% | |
| GGAAATCCAAATAAACAGTA+TGG | - | chr7_3:72605310-72605329 | None:intergenic | 30.0% | |
| TATCTACCAAAGTTGTTACT+AGG | + | chr7_3:72605339-72605358 | Msa1122250:intron | 30.0% | |
| GAGAATTACACCTTCAAATA+TGG | + | chr7_3:72605509-72605528 | Msa1122250:intron | 30.0% | |
| ! | ATACTGAAGCCACTTTAATA+TGG | + | chr7_3:72605550-72605569 | Msa1122250:intron | 30.0% |
| GTATTGTTACCACTCTATAA+TGG | + | chr7_3:72605572-72605591 | Msa1122250:intron | 30.0% | |
| AGAAATTAAGGTTAGAATGG+TGG | - | chr7_3:72605625-72605644 | None:intergenic | 30.0% | |
| TGGAGAAATTAAGGTTAGAA+TGG | - | chr7_3:72605628-72605647 | None:intergenic | 30.0% | |
| AAGATCATTCTTAATTCCGA+CGG | + | chr7_3:72605740-72605759 | Msa1122250:intron | 30.0% | |
| GGACATTGTTTATTCCAAAT+AGG | + | chr7_3:72605762-72605781 | Msa1122250:intron | 30.0% | |
| TTAAGATCATAGTCCCTATT+TGG | - | chr7_3:72605779-72605798 | None:intergenic | 30.0% | |
| ! | AAAGAGTTTCATTGAGTTGT+CGG | - | chr7_3:72606040-72606059 | None:intergenic | 30.0% |
| TAGTAGTGTTTATATAGTGG+GGG | - | chr7_3:72606406-72606425 | None:intergenic | 30.0% | |
| GTTGTGTGAATTGAAAAAAG+TGG | - | chr7_3:72606458-72606477 | None:intergenic | 30.0% | |
| TAAACACAAATTCCCATGTT+GGG | - | chr7_3:72606491-72606510 | None:intergenic | 30.0% | |
| AGAAATGTGTGTATGGTTAG+TGG | - | chr7_3:72602746-72602765 | None:intergenic | 35.0% | |
| CAAGAGAAGAAATGTGTGTA+TGG | - | chr7_3:72602753-72602772 | None:intergenic | 35.0% | |
| CATACACACATTTCTTCTCT+TGG | + | chr7_3:72602751-72602770 | Msa1122250:five_prime_UTR | 35.0% | |
| ! | CAATGGTTTTTGTCTTGAGA+AGG | - | chr7_3:72602883-72602902 | None:intergenic | 35.0% |
| CTTCTCAAGACAAAAACCAT+TGG | + | chr7_3:72602881-72602900 | Msa1122250:five_prime_UTR | 35.0% | |
| TGAAAACAAGATCCACCAAA+TGG | - | chr7_3:72602933-72602952 | None:intergenic | 35.0% | |
| GGAGAGGATCATATATCAAA+AGG | - | chr7_3:72602992-72603011 | None:intergenic | 35.0% | |
| GTAAAACATTGTGATTGGAG+AGG | - | chr7_3:72603008-72603027 | None:intergenic | 35.0% | |
| ! | CTTGTGTCAAATGGTTTTTG+TGG | + | chr7_3:72603109-72603128 | Msa1122250:CDS | 35.0% |
| TTGGCATCAAAATTTGAGCA+TGG | + | chr7_3:72603235-72603254 | Msa1122250:CDS | 35.0% | |
| GGATTTGCATGATTTACCAT+TGG | + | chr7_3:72603288-72603307 | Msa1122250:CDS | 35.0% | |
| ACAAGTGTGCAAATCTCTTA+GGG | + | chr7_3:72603357-72603376 | Msa1122250:CDS | 35.0% | |
| ! | ATGAAATGGGGCAAAGTTTT+AGG | + | chr7_3:72603421-72603440 | Msa1122250:CDS | 35.0% |
| GTGATTCTGCTTATAGACAA+TGG | + | chr7_3:72603443-72603462 | Msa1122250:CDS | 35.0% | |
| ACAATACTTGCTTTCCTTCA+TGG | + | chr7_3:72603526-72603545 | Msa1122250:CDS | 35.0% | |
| AGAAAGGAAGAAAACCATGA+AGG | - | chr7_3:72603543-72603562 | None:intergenic | 35.0% | |
| TACCTCACGGTTATAAACTT+GGG | - | chr7_3:72603668-72603687 | None:intergenic | 35.0% | |
| TTACCTCACGGTTATAAACT+TGG | - | chr7_3:72603669-72603688 | None:intergenic | 35.0% | |
| TATAACCGTGAGGTAAATAC+TGG | + | chr7_3:72603673-72603692 | Msa1122250:intron | 35.0% | |
| !! | AGGTAAAAAGACAAGTTGGT+TGG | - | chr7_3:72603957-72603976 | None:intergenic | 35.0% |
| ! | TACCTGTCCTATTGTACTTT+TGG | + | chr7_3:72603972-72603991 | Msa1122250:intron | 35.0% |
| ! | AACCAAAAGTACAATAGGAC+AGG | - | chr7_3:72603977-72603996 | None:intergenic | 35.0% |
| ! | TAGTGTCTACGTGTTAGTTT+CGG | - | chr7_3:72604049-72604068 | None:intergenic | 35.0% |
| ! | GTCATACACCAGAATGATTT+TGG | + | chr7_3:72604132-72604151 | Msa1122250:intron | 35.0% |
| ACTTCAGACCAAAATCATTC+TGG | - | chr7_3:72604143-72604162 | None:intergenic | 35.0% | |
| TCATTCATGTTTCTTCTGAC+AGG | + | chr7_3:72604247-72604266 | Msa1122250:intron | 35.0% | |
| ACATGTGAAGAAGAGTCAAT+AGG | - | chr7_3:72604336-72604355 | None:intergenic | 35.0% | |
| TGAATTTCAACATGATCTCC+AGG | - | chr7_3:72604393-72604412 | None:intergenic | 35.0% | |
| GAGATCATGTTGAAATTCAG+TGG | + | chr7_3:72604394-72604413 | Msa1122250:CDS | 35.0% | |
| AATTCAGTGGAGAAGAAACA+AGG | + | chr7_3:72604407-72604426 | Msa1122250:CDS | 35.0% | |
| TAGGATGAGACATACCATAA+GGG | - | chr7_3:72604437-72604456 | None:intergenic | 35.0% | |
| ! | GTATAGTGTCATTGGTCATT+TGG | + | chr7_3:72604732-72604751 | Msa1122250:CDS | 35.0% |
| CTTTATTGTGACATTGGCAA+TGG | - | chr7_3:72604780-72604799 | None:intergenic | 35.0% | |
| CATTGCCAATGTCACAATAA+AGG | + | chr7_3:72604778-72604797 | Msa1122250:CDS | 35.0% | |
| AATCAGAAAGTTGCATAGCA+AGG | + | chr7_3:72605014-72605033 | Msa1122250:CDS | 35.0% | |
| ! | ATGTGAATGTAAAGGCATGA+AGG | + | chr7_3:72605139-72605158 | Msa1122250:three_prime_UTR | 35.0% |
| TGTCACTCATTCCTAACTAT+AGG | + | chr7_3:72605184-72605203 | Msa1122250:three_prime_UTR | 35.0% | |
| ACTCAACCTAGTAACAACTT+TGG | - | chr7_3:72605348-72605367 | None:intergenic | 35.0% | |
| ! | AGTCTACCTTGCACAATTTT+GGG | - | chr7_3:72605411-72605430 | None:intergenic | 35.0% |
| ! | TAGTCTACCTTGCACAATTT+TGG | - | chr7_3:72605412-72605431 | None:intergenic | 35.0% |
| ! | AATTCTCGAACGGTTTTCTA+CGG | - | chr7_3:72605496-72605515 | None:intergenic | 35.0% |
| ! | TTGAAGGTGTAATTCTCGAA+CGG | - | chr7_3:72605506-72605525 | None:intergenic | 35.0% |
| GGTCTTAGTACCATATTTGA+AGG | - | chr7_3:72605522-72605541 | None:intergenic | 35.0% | |
| GTAGTGCCATATTGATACTT+TGG | - | chr7_3:72605648-72605667 | None:intergenic | 35.0% | |
| TTCTATTTGAGGAGAAATGG+TGG | - | chr7_3:72605692-72605711 | None:intergenic | 35.0% | |
| AGATCATTCTTAATTCCGAC+GGG | + | chr7_3:72605741-72605760 | Msa1122250:intron | 35.0% | |
| TCTTAAGTTCATAGTCCCTT+CGG | - | chr7_3:72605834-72605853 | None:intergenic | 35.0% | |
| AAGACCATTCTTAATTCCGA+AGG | + | chr7_3:72605850-72605869 | Msa1122250:intron | 35.0% | |
| AGACCATTCTTAATTCCGAA+GGG | + | chr7_3:72605851-72605870 | Msa1122250:intron | 35.0% | |
| ! | TTTTCGGTTTAATGTCCCTT+CGG | - | chr7_3:72605869-72605888 | None:intergenic | 35.0% |
| AAGGGACATTAAACCGAAAA+GGG | + | chr7_3:72605869-72605888 | Msa1122250:intron | 35.0% | |
| ATTAAACCGAAAAGGGACTA+TGG | + | chr7_3:72605876-72605895 | Msa1122250:intron | 35.0% | |
| ! | TTAAGACCATAGTCCCTTTT+CGG | - | chr7_3:72605885-72605904 | None:intergenic | 35.0% |
| AAGAACACTCTTAATTCCGA+AGG | + | chr7_3:72605903-72605922 | Msa1122250:intron | 35.0% | |
| AGAACACTCTTAATTCCGAA+GGG | + | chr7_3:72605904-72605923 | Msa1122250:intron | 35.0% | |
| AAAGGAGTAGAAAAAGGAGA+AGG | + | chr7_3:72605931-72605950 | Msa1122250:intron | 35.0% | |
| TTGTTAAACAAGTCGAAGGA+GGG | + | chr7_3:72605956-72605975 | Msa1122250:intron | 35.0% | |
| ! | AAGAGTTTCATTGAGTTGTC+GGG | - | chr7_3:72606039-72606058 | None:intergenic | 35.0% |
| GACAACTCAATGAAACTCTT+TGG | + | chr7_3:72606039-72606058 | Msa1122250:intron | 35.0% | |
| TATGTACCCCCATTAATTAG+AGG | + | chr7_3:72606376-72606395 | Msa1122250:intron | 35.0% | |
| CTAAACACAAATTCCCATGT+TGG | - | chr7_3:72606492-72606511 | None:intergenic | 35.0% | |
| ATGTGTGTATGGTTAGTGGA+AGG | - | chr7_3:72602742-72602761 | None:intergenic | 40.0% | |
| ! | TAGTGGTTTGGCAAAACCAA+TGG | - | chr7_3:72602900-72602919 | None:intergenic | 40.0% |
| CAAATGGAAGATGAGACTAG+TGG | - | chr7_3:72602917-72602936 | None:intergenic | 40.0% | |
| ! | CACTAGTCTCATCTTCCATT+TGG | + | chr7_3:72602915-72602934 | Msa1122250:five_prime_UTR | 40.0% |
| TAGTCTCATCTTCCATTTGG+TGG | + | chr7_3:72602918-72602937 | Msa1122250:five_prime_UTR | 40.0% | |
| TTTGTCCCATTTGATGAGAG+TGG | - | chr7_3:72603088-72603107 | None:intergenic | 40.0% | |
| GGGACAAAACTTGTGTCAAA+TGG | + | chr7_3:72603100-72603119 | Msa1122250:CDS | 40.0% | |
| !!! | TTGTTTTGAGCCTAGAAGCT+AGG | - | chr7_3:72603150-72603169 | None:intergenic | 40.0% |
| TGAAGAGAAAGCTTCTCTCT+TGG | + | chr7_3:72603267-72603286 | Msa1122250:CDS | 40.0% | |
| ACCTAGTGAATTACGCAATG+TGG | + | chr7_3:72603333-72603352 | Msa1122250:CDS | 40.0% | |
| CACAAGTGTGCAAATCTCTT+AGG | + | chr7_3:72603356-72603375 | Msa1122250:CDS | 40.0% | |
| TGCAACCAGTATTTACCTCA+CGG | - | chr7_3:72603681-72603700 | None:intergenic | 40.0% | |
| !! | TACTGGTTGCATGCAGATTT+TGG | + | chr7_3:72603690-72603709 | Msa1122250:intron | 40.0% |
| GAACAGATACCTTTCAAGCA+AGG | + | chr7_3:72603888-72603907 | Msa1122250:CDS | 40.0% | |
| TTGCACATACCTTGCTTGAA+AGG | - | chr7_3:72603900-72603919 | None:intergenic | 40.0% | |
| GGACAGGTAAAAAGACAAGT+TGG | - | chr7_3:72603961-72603980 | None:intergenic | 40.0% | |
| ATCATTCTGGTGTATGACAC+TGG | - | chr7_3:72604130-72604149 | None:intergenic | 40.0% | |
| TGTGAAGAAGAGTCAATAGG+TGG | - | chr7_3:72604333-72604352 | None:intergenic | 40.0% | |
| CTGACTGCTTAGATGACTTA+AGG | + | chr7_3:72604367-72604386 | Msa1122250:CDS | 40.0% | |
| AGAAACAAGGAGTTCCCTTA+TGG | + | chr7_3:72604420-72604439 | Msa1122250:CDS | 40.0% | |
| CTAGGATGAGACATACCATA+AGG | - | chr7_3:72604438-72604457 | None:intergenic | 40.0% | |
| GGTCATTTGGAAACATGTCA+AGG | + | chr7_3:72604745-72604764 | Msa1122250:CDS | 40.0% | |
| TTGGAAACATGTCAAGGTGA+TGG | + | chr7_3:72604751-72604770 | Msa1122250:CDS | 40.0% | |
| TGGAAACATGTCAAGGTGAT+GGG | + | chr7_3:72604752-72604771 | Msa1122250:CDS | 40.0% | |
| ! | GGTGACAGATACAGTGATTT+TGG | + | chr7_3:72604891-72604910 | Msa1122250:intron | 40.0% |
| GTGGCTTCAGTATTAAAGAG+TGG | - | chr7_3:72605543-72605562 | None:intergenic | 40.0% | |
| GTCTTAGCACCATTATAGAG+TGG | - | chr7_3:72605584-72605603 | None:intergenic | 40.0% | |
| GTGCTAAGACCACTCAAATA+TGG | + | chr7_3:72605594-72605613 | Msa1122250:intron | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr7_3:72605606-72605625 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr7_3:72605673-72605692 | None:intergenic | 40.0% | |
| TGGAATAAACAATGTCCCGT+CGG | - | chr7_3:72605759-72605778 | None:intergenic | 40.0% | |
| TTCGGTAATATACGTCCCTT+CGG | - | chr7_3:72605816-72605835 | None:intergenic | 40.0% | |
| AAGGGACGTATATTACCGAA+GGG | + | chr7_3:72605816-72605835 | Msa1122250:intron | 40.0% | |
| TGTCCCTTCGGAATTAAGAA+TGG | - | chr7_3:72605857-72605876 | None:intergenic | 40.0% | |
| GAAGGGACATTAAACCGAAA+AGG | + | chr7_3:72605868-72605887 | Msa1122250:intron | 40.0% | |
| TTAATTCCGAAGGGACAGAA+AGG | + | chr7_3:72605913-72605932 | Msa1122250:intron | 40.0% | |
| GGACAGAAAGGAGTAGAAAA+AGG | + | chr7_3:72605925-72605944 | Msa1122250:intron | 40.0% | |
| !! | GGACTTGTTAAACAAGTCGA+AGG | + | chr7_3:72605952-72605971 | Msa1122250:intron | 40.0% |
| CTTGTTAAACAAGTCGAAGG+AGG | + | chr7_3:72605955-72605974 | Msa1122250:intron | 40.0% | |
| TCGTCAACACAAGTCAAGAA+AGG | + | chr7_3:72605995-72606014 | Msa1122250:intron | 40.0% | |
| CGTCAACACAAGTCAAGAAA+GGG | + | chr7_3:72605996-72606015 | Msa1122250:intron | 40.0% | |
| ! | CAATGAAACTCTTTGGTGTG+TGG | + | chr7_3:72606046-72606065 | Msa1122250:intron | 40.0% |
| GGTGTACCTCTAATTAATGG+GGG | - | chr7_3:72606385-72606404 | None:intergenic | 40.0% | |
| GGGTGTACCTCTAATTAATG+GGG | - | chr7_3:72606386-72606405 | None:intergenic | 40.0% | |
| GGGGTGTACCTCTAATTAAT+GGG | - | chr7_3:72606387-72606406 | None:intergenic | 40.0% | |
| AAAAAGTGGAAGTCCCACAT+CGG | - | chr7_3:72606444-72606463 | None:intergenic | 40.0% | |
| !! | AACACTAGTTCTACCCAACA+TGG | + | chr7_3:72606475-72606494 | Msa1122250:intron | 40.0% |
| !! | ACACTAGTTCTACCCAACAT+GGG | + | chr7_3:72606476-72606495 | Msa1122250:intron | 40.0% |
| AGTAACTGTTGGAACATGTG+TGG | - | chr7_3:72606532-72606551 | None:intergenic | 40.0% | |
| GGAAGATGAGACTAGTGGTT+TGG | - | chr7_3:72602912-72602931 | None:intergenic | 45.0% | |
| GCCACATTGCGTAATTCACT+AGG | - | chr7_3:72603337-72603356 | None:intergenic | 45.0% | |
| AGAGCAGCAATTGAGTCATC+TGG | - | chr7_3:72603607-72603626 | None:intergenic | 45.0% | |
| CACGGTTATAAACTTGGGCA+GGG | - | chr7_3:72603663-72603682 | None:intergenic | 45.0% | |
| TCACGGTTATAAACTTGGGC+AGG | - | chr7_3:72603664-72603683 | None:intergenic | 45.0% | |
| TGCCCAAGTTTATAACCGTG+AGG | + | chr7_3:72603663-72603682 | Msa1122250:CDS | 45.0% | |
| ! | CATTTTCAGAATGGTCGTGC+TGG | + | chr7_3:72603821-72603840 | Msa1122250:intron | 45.0% |
| GCACATGACACTAACACATG+TGG | - | chr7_3:72604108-72604127 | None:intergenic | 45.0% | |
| TGCTTAGATGACTTAAGGCC+TGG | + | chr7_3:72604372-72604391 | Msa1122250:CDS | 45.0% | |
| !! | GGTTGGTGGTATAGTGTCAT+TGG | + | chr7_3:72604724-72604743 | Msa1122250:intron | 45.0% |
| GAGTTCACACAATACACAGC+TGG | + | chr7_3:72604913-72604932 | Msa1122250:CDS | 45.0% | |
| ! | AATACACAGCTGGCTCAAGA+TGG | + | chr7_3:72604923-72604942 | Msa1122250:CDS | 45.0% |
| CAGAAAGTTGCATAGCAAGG+AGG | + | chr7_3:72605017-72605036 | Msa1122250:CDS | 45.0% | |
| GCAAGGAGGAGATTACAAAG+TGG | + | chr7_3:72605031-72605050 | Msa1122250:CDS | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr7_3:72605380-72605399 | Msa1122250:intron | 45.0% |
| GCACTACCCAAAATTGTGCA+AGG | + | chr7_3:72605402-72605421 | Msa1122250:intron | 45.0% | |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr7_3:72605450-72605469 | None:intergenic | 45.0% |
| TTAACCGCACAGTTGTAGCT+GGG | - | chr7_3:72605465-72605484 | None:intergenic | 45.0% | |
| GCACTACGACCACTCAAATA+TGG | + | chr7_3:72605661-72605680 | Msa1122250:intron | 45.0% | |
| GAAGGGACGTATATTACCGA+AGG | + | chr7_3:72605815-72605834 | Msa1122250:intron | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr7_3:72605922-72605941 | None:intergenic | 45.0% | |
| ! | GGGGGTGTACCTCTAATTAA+TGG | - | chr7_3:72606388-72606407 | None:intergenic | 45.0% |
| !!! | TTGATATATATTTTATTATT+TGG | - | chr7_3:72606335-72606354 | None:intergenic | 5.0% |
| !! | ACGTGTTAGTTTCGGTGTCG+TGG | - | chr7_3:72604041-72604060 | None:intergenic | 50.0% |
| TCTGACAGGTACTCACCTCA+TGG | + | chr7_3:72604261-72604280 | Msa1122250:intron | 50.0% | |
| CTGACAGGTACTCACCTCAT+GGG | + | chr7_3:72604262-72604281 | Msa1122250:intron | 50.0% | |
| TCAGTTGTCCATCTCCCATG+AGG | - | chr7_3:72604279-72604298 | None:intergenic | 50.0% | |
| TCATGGGAGATGGACAACTG+AGG | + | chr7_3:72604278-72604297 | Msa1122250:CDS | 50.0% | |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr7_3:72605355-72605374 | Msa1122250:intron | 50.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr7_3:72605376-72605395 | None:intergenic | 50.0% | |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr7_3:72605447-72605466 | None:intergenic | 50.0% |
| GTTAACCGCACAGTTGTAGC+TGG | - | chr7_3:72605466-72605485 | None:intergenic | 50.0% | |
| TGTGTGTGTTCCATCCGATG+TGG | + | chr7_3:72606427-72606446 | Msa1122250:intron | 50.0% | |
| GTGTGTGTTCCATCCGATGT+GGG | + | chr7_3:72606428-72606447 | Msa1122250:intron | 50.0% | |
| AGTGGAAGGCAGCTGTTGTG+TGG | - | chr7_3:72602728-72602747 | None:intergenic | 55.0% | |
| GGTACTCACCTCATGGGAGA+TGG | + | chr7_3:72604268-72604287 | Msa1122250:intron | 55.0% | |
| ! | GTTTTATCCTGGAGGCAGCG+TGG | - | chr7_3:72605439-72605458 | None:intergenic | 55.0% |
| CAAGCCCAGCTACAACTGTG+CGG | + | chr7_3:72605458-72605477 | Msa1122250:intron | 55.0% | |
| AGTCGAAGGAGGGAGAAGAG+AGG | + | chr7_3:72605966-72605985 | Msa1122250:intron | 55.0% | |
| AGTGGAAGTCCCACATCGGA+TGG | - | chr7_3:72606440-72606459 | None:intergenic | 55.0% | |
| CTATCAACCACGCTGCCTCC+AGG | + | chr7_3:72605429-72605448 | Msa1122250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 72602722 | 72606653 | 72602722 | ID=Msa1122250;Name=Msa1122250 |
| chr7_3 | mRNA | 72602722 | 72606653 | 72602722 | ID=Msa1122250-mRNA-1;Parent=Msa1122250;Name=Msa1122250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=297|1|1|1|0.8|0.66|6|307|393 |
| chr7_3 | exon | 72602722 | 72603684 | 72602722 | ID=Msa1122250-mRNA-1:exon:18894;Parent=Msa1122250-mRNA-1 |
| chr7_3 | exon | 72603830 | 72603909 | 72603830 | ID=Msa1122250-mRNA-1:exon:18895;Parent=Msa1122250-mRNA-1 |
| chr7_3 | exon | 72604269 | 72604441 | 72604269 | ID=Msa1122250-mRNA-1:exon:18896;Parent=Msa1122250-mRNA-1 |
| chr7_3 | exon | 72604725 | 72604799 | 72604725 | ID=Msa1122250-mRNA-1:exon:18897;Parent=Msa1122250-mRNA-1 |
| chr7_3 | exon | 72604899 | 72605286 | 72604899 | ID=Msa1122250-mRNA-1:exon:18898;Parent=Msa1122250-mRNA-1 |
| chr7_3 | exon | 72606547 | 72606653 | 72606547 | ID=Msa1122250-mRNA-1:exon:18899;Parent=Msa1122250-mRNA-1 |
| chr7_3 | five_prime_UTR | 72602722 | 72603018 | 72602722 | ID=Msa1122250-mRNA-1:five_prime_utr;Parent=Msa1122250-mRNA-1 |
| chr7_3 | CDS | 72603019 | 72603684 | 72603019 | ID=Msa1122250-mRNA-1:cds;Parent=Msa1122250-mRNA-1 |
| chr7_3 | CDS | 72603830 | 72603909 | 72603830 | ID=Msa1122250-mRNA-1:cds;Parent=Msa1122250-mRNA-1 |
| chr7_3 | CDS | 72604269 | 72604441 | 72604269 | ID=Msa1122250-mRNA-1:cds;Parent=Msa1122250-mRNA-1 |
| chr7_3 | CDS | 72604725 | 72604799 | 72604725 | ID=Msa1122250-mRNA-1:cds;Parent=Msa1122250-mRNA-1 |
| chr7_3 | CDS | 72604899 | 72605086 | 72604899 | ID=Msa1122250-mRNA-1:cds;Parent=Msa1122250-mRNA-1 |
| chr7_3 | three_prime_UTR | 72605087 | 72605286 | 72605087 | ID=Msa1122250-mRNA-1:three_prime_utr;Parent=Msa1122250-mRNA-1 |
| chr7_3 | three_prime_UTR | 72606547 | 72606653 | 72606547 | ID=Msa1122250-mRNA-1:three_prime_utr;Parent=Msa1122250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
