AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871400 MtrunA17_Chr6g0452701 61.069 131 1 1 1 81 349 479 4.18e-42 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871400 AT5G39940.1 42.748 131 25 1 1 81 339 469 5.58e-26 99.4
Msa0871400 AT5G39940.3 43.307 127 26 2 1 81 339 465 1.65e-24 95.1
Msa0871400 AT5G39940.2 37.615 109 18 1 1 59 339 447 8.42e-16 70.5
Msa0871400 AT5G39940.4 37.615 109 18 1 1 59 301 409 8.81e-16 70.5

Find 18 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGTGTCCTCTTGAATT+CGG 0.317024 6_1:+6281214 Msa0871400:CDS
AACTGGTGGTTTCAATTTCC+AGG 0.317954 6_1:+6282200 Msa0871400:CDS
TGTTCAAATCTGTTCTTTGC+TGG 0.339868 6_1:+6282061 Msa0871400:CDS
AGCACTTGACTCTTGTGTTT+AGG 0.349441 6_1:+6282840 Msa0871400:CDS
AAGATTCTGGAGCTATTTGT+TGG 0.385887 6_1:+6281246 Msa0871400:CDS
ATTCGTGTCCTCTTGAATTC+GGG 0.391574 6_1:+6281215 Msa0871400:CDS
TTGCAGATATTGAATGTTGA+TGG 0.394661 6_1:+6282174 Msa0871400:intron
TTTATTGCAGGAACAACAAT+TGG 0.403318 6_1:+6282811 Msa0871400:CDS
TGGTCAGGAGGATTTATTGC+AGG 0.405757 6_1:+6282799 Msa0871400:CDS
TTGAATGTTGATGGAGTAAC+TGG 0.442409 6_1:+6282183 Msa0871400:CDS
GAGCTATTTGTTGGAACGAC+AGG 0.483634 6_1:+6281255 Msa0871400:CDS
CGTTCTATATACAGAATGCT+TGG 0.492912 6_1:+6282779 Msa0871400:intron
TATATACAGAATGCTTGGTC+AGG 0.512151 6_1:+6282784 Msa0871400:intron
ATTGCAGGAACAACAATTGG+TGG 0.518923 6_1:+6282814 Msa0871400:CDS
AAATCTGTTCTTTGCTGGAG+AGG 0.552667 6_1:+6282066 Msa0871400:CDS
TTTGTTATCCCGAATTCAAG+AGG 0.567093 6_1:-6281223 None:intergenic
ATACAGAATGCTTGGTCAGG+AGG 0.582528 6_1:+6282787 Msa0871400:intron
AATGTTGATGGAGTAACTGG+TGG 0.669805 6_1:+6282186 Msa0871400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAATTGAAATTTG+AGG + chr6_1:6281733-6281752 Msa0871400:intron 10.0%
!! ATAAAAAAATTGAAATTTGA+GGG + chr6_1:6281734-6281753 Msa0871400:intron 10.0%
!! TATAAAAAAATTGAAATTTG+AGG + chr6_1:6281733-6281752 Msa0871400:intron 10.0%
!! ATAAAAAAATTGAAATTTGA+GGG + chr6_1:6281734-6281753 Msa0871400:intron 10.0%
!! AATAAATACTAAATAACACT+AGG - chr6_1:6281485-6281504 None:intergenic 15.0%
!!! TTTTGTAATATTGCTAATTT+AGG + chr6_1:6281760-6281779 Msa0871400:intron 15.0%
!! TTTGTAATATTGCTAATTTA+GGG + chr6_1:6281761-6281780 Msa0871400:intron 15.0%
!!! TGTTTTTTCATTTGAATTTT+CGG + chr6_1:6282102-6282121 Msa0871400:intron 15.0%
!! CTTTACATAAATAAAAGTTT+AGG - chr6_1:6282638-6282657 None:intergenic 15.0%
!! AATAAATACTAAATAACACT+AGG - chr6_1:6281485-6281504 None:intergenic 15.0%
!!! TTTTGTAATATTGCTAATTT+AGG + chr6_1:6281760-6281779 Msa0871400:intron 15.0%
!! TTTGTAATATTGCTAATTTA+GGG + chr6_1:6281761-6281780 Msa0871400:intron 15.0%
!!! TGTTTTTTCATTTGAATTTT+CGG + chr6_1:6282102-6282121 Msa0871400:intron 15.0%
!! CTTTACATAAATAAAAGTTT+AGG - chr6_1:6282638-6282657 None:intergenic 15.0%
!!! TTTAGAGTAAATATCCAATT+TGG + chr6_1:6281504-6281523 Msa0871400:intron 20.0%
!!! TTCTAAAAAATTTAAGGACT+AGG - chr6_1:6281556-6281575 None:intergenic 20.0%
!!! TGATCGTTCTAAAAAATTTA+AGG - chr6_1:6281562-6281581 None:intergenic 20.0%
!! ATATGTTATCAAATGCATTA+CGG + chr6_1:6281624-6281643 Msa0871400:intron 20.0%
!! TTGTAATATTGCTAATTTAG+GGG + chr6_1:6281762-6281781 Msa0871400:intron 20.0%
!!! TTTCAATTTTGTGCTAATAA+AGG + chr6_1:6281871-6281890 Msa0871400:intron 20.0%
!!! TTCAATTTTGTGCTAATAAA+GGG + chr6_1:6281872-6281891 Msa0871400:intron 20.0%
!! TGAGAAATAGTAAAAAAGAA+AGG - chr6_1:6281955-6281974 None:intergenic 20.0%
!!! AGAAATTTTTTTGTTGTTGA+AGG + chr6_1:6282009-6282028 Msa0871400:intron 20.0%
!! TATTAAGAACTATTGAACTT+GGG - chr6_1:6282262-6282281 None:intergenic 20.0%
!! TTATTAAGAACTATTGAACT+TGG - chr6_1:6282263-6282282 None:intergenic 20.0%
!! TTAATTGAACAAAATCCATA+CGG + chr6_1:6282347-6282366 Msa0871400:intron 20.0%
!! TCGAGTTATTTAATTGATAA+AGG - chr6_1:6282603-6282622 None:intergenic 20.0%
!!! TTTAGAGTAAATATCCAATT+TGG + chr6_1:6281504-6281523 Msa0871400:intron 20.0%
!!! TTCTAAAAAATTTAAGGACT+AGG - chr6_1:6281556-6281575 None:intergenic 20.0%
!!! TGATCGTTCTAAAAAATTTA+AGG - chr6_1:6281562-6281581 None:intergenic 20.0%
!! ATATGTTATCAAATGCATTA+CGG + chr6_1:6281624-6281643 Msa0871400:intron 20.0%
!! TTGTAATATTGCTAATTTAG+GGG + chr6_1:6281762-6281781 Msa0871400:intron 20.0%
!!! TTTCAATTTTGTGCTAATAA+AGG + chr6_1:6281871-6281890 Msa0871400:intron 20.0%
!!! TTCAATTTTGTGCTAATAAA+GGG + chr6_1:6281872-6281891 Msa0871400:intron 20.0%
!! TGAGAAATAGTAAAAAAGAA+AGG - chr6_1:6281955-6281974 None:intergenic 20.0%
!!! AGAAATTTTTTTGTTGTTGA+AGG + chr6_1:6282009-6282028 Msa0871400:intron 20.0%
!! TATTAAGAACTATTGAACTT+GGG - chr6_1:6282262-6282281 None:intergenic 20.0%
!! TTATTAAGAACTATTGAACT+TGG - chr6_1:6282263-6282282 None:intergenic 20.0%
!! TTAATTGAACAAAATCCATA+CGG + chr6_1:6282347-6282366 Msa0871400:intron 20.0%
!! TCGAGTTATTTAATTGATAA+AGG - chr6_1:6282603-6282622 None:intergenic 20.0%
! AAAGAAACTATTTCGTATGT+AGG + chr6_1:6281352-6281371 Msa0871400:intron 25.0%
! AAGAAACTATTTCGTATGTA+GGG + chr6_1:6281353-6281372 Msa0871400:intron 25.0%
! AATAGACATCAATGCATTAT+TGG - chr6_1:6281411-6281430 None:intergenic 25.0%
!! AATAATGCATTGATGTCTAT+TGG + chr6_1:6281410-6281429 Msa0871400:intron 25.0%
! GATAACATATTCAGAAAGAA+TGG - chr6_1:6281614-6281633 None:intergenic 25.0%
!! ATAACAGTTTGGTAATTTCA+GGG - chr6_1:6281675-6281694 None:intergenic 25.0%
!! AATAACAGTTTGGTAATTTC+AGG - chr6_1:6281676-6281695 None:intergenic 25.0%
! AGGACTATATAATAACAGTT+TGG - chr6_1:6281686-6281705 None:intergenic 25.0%
! TCTAACCAATGAAAAAAGTA+AGG - chr6_1:6281979-6281998 None:intergenic 25.0%
! TAATTGAACAAAATCCATAC+GGG + chr6_1:6282348-6282367 Msa0871400:intron 25.0%
! TAAGTCAAATCAAATCATGT+GGG - chr6_1:6282395-6282414 None:intergenic 25.0%
! ATAAGTCAAATCAAATCATG+TGG - chr6_1:6282396-6282415 None:intergenic 25.0%
! ATTTCAACACACTTTATCAT+TGG - chr6_1:6282428-6282447 None:intergenic 25.0%
!!! AGAAGCATCTATAACTTTTT+AGG - chr6_1:6282480-6282499 None:intergenic 25.0%
! TGAATATACCATCAATCAAT+GGG - chr6_1:6282731-6282750 None:intergenic 25.0%
! TTGAATATACCATCAATCAA+TGG - chr6_1:6282732-6282751 None:intergenic 25.0%
! GTATATAGAACGAACAAAAA+TGG - chr6_1:6282771-6282790 None:intergenic 25.0%
! AAAGAAACTATTTCGTATGT+AGG + chr6_1:6281352-6281371 Msa0871400:intron 25.0%
! AAGAAACTATTTCGTATGTA+GGG + chr6_1:6281353-6281372 Msa0871400:intron 25.0%
! AATAGACATCAATGCATTAT+TGG - chr6_1:6281411-6281430 None:intergenic 25.0%
!! AATAATGCATTGATGTCTAT+TGG + chr6_1:6281410-6281429 Msa0871400:intron 25.0%
! GATAACATATTCAGAAAGAA+TGG - chr6_1:6281614-6281633 None:intergenic 25.0%
!! ATAACAGTTTGGTAATTTCA+GGG - chr6_1:6281675-6281694 None:intergenic 25.0%
!! AATAACAGTTTGGTAATTTC+AGG - chr6_1:6281676-6281695 None:intergenic 25.0%
! AGGACTATATAATAACAGTT+TGG - chr6_1:6281686-6281705 None:intergenic 25.0%
! TCTAACCAATGAAAAAAGTA+AGG - chr6_1:6281979-6281998 None:intergenic 25.0%
! TAATTGAACAAAATCCATAC+GGG + chr6_1:6282348-6282367 Msa0871400:intron 25.0%
! TAAGTCAAATCAAATCATGT+GGG - chr6_1:6282395-6282414 None:intergenic 25.0%
! ATAAGTCAAATCAAATCATG+TGG - chr6_1:6282396-6282415 None:intergenic 25.0%
! ATTTCAACACACTTTATCAT+TGG - chr6_1:6282428-6282447 None:intergenic 25.0%
!!! AGAAGCATCTATAACTTTTT+AGG - chr6_1:6282480-6282499 None:intergenic 25.0%
! TGAATATACCATCAATCAAT+GGG - chr6_1:6282731-6282750 None:intergenic 25.0%
! TTGAATATACCATCAATCAA+TGG - chr6_1:6282732-6282751 None:intergenic 25.0%
! GTATATAGAACGAACAAAAA+TGG - chr6_1:6282771-6282790 None:intergenic 25.0%
TTTAAGTGGGGATATCTTAT+GGG + chr6_1:6281376-6281395 Msa0871400:intron 30.0%
CAATGCATTATTGGAAATTG+AGG - chr6_1:6281402-6281421 None:intergenic 30.0%
!! GTCTATTGGTTCATTGATAA+AGG + chr6_1:6281424-6281443 Msa0871400:intron 30.0%
TTGAAATTACAGGCAAAGTA+AGG + chr6_1:6281456-6281475 Msa0871400:intron 30.0%
GATATGGTCATAAAACTTCA+GGG - chr6_1:6281531-6281550 None:intergenic 30.0%
TGATATGGTCATAAAACTTC+AGG - chr6_1:6281532-6281551 None:intergenic 30.0%
!! ATTTAAGGACTAGGTTGATA+TGG - chr6_1:6281547-6281566 None:intergenic 30.0%
TGATATAGTCCTACCATTTA+AGG + chr6_1:6281792-6281811 Msa0871400:intron 30.0%
GATATAGTCCTACCATTTAA+GGG + chr6_1:6281793-6281812 Msa0871400:intron 30.0%
GACCAAATTGAGTATTTGAT+CGG + chr6_1:6281815-6281834 Msa0871400:intron 30.0%
AACCGATCAAATACTCAATT+TGG - chr6_1:6281820-6281839 None:intergenic 30.0%
GTGACAAATTCATCCTTAAA+TGG - chr6_1:6281899-6281918 None:intergenic 30.0%
!!! CTCAACCTTACTTTTTTCAT+TGG + chr6_1:6281971-6281990 Msa0871400:intron 30.0%
TTGCAGATATTGAATGTTGA+TGG + chr6_1:6282174-6282193 Msa0871400:intron 30.0%
! TTTAGCACATGTATTTTACC+TGG - chr6_1:6282221-6282240 None:intergenic 30.0%
AAAGTTATAGATGCTTCTCT+AGG + chr6_1:6282482-6282501 Msa0871400:intron 30.0%
AACTATGAAAAATGACCTTC+AGG - chr6_1:6282550-6282569 None:intergenic 30.0%
!! GTTTCTTGTATCGTTTTTCA+TGG + chr6_1:6282567-6282586 Msa0871400:intron 30.0%
TTTATTGCAGGAACAACAAT+TGG + chr6_1:6282811-6282830 Msa0871400:CDS 30.0%
TTTAAGTGGGGATATCTTAT+GGG + chr6_1:6281376-6281395 Msa0871400:intron 30.0%
CAATGCATTATTGGAAATTG+AGG - chr6_1:6281402-6281421 None:intergenic 30.0%
!! GTCTATTGGTTCATTGATAA+AGG + chr6_1:6281424-6281443 Msa0871400:intron 30.0%
TTGAAATTACAGGCAAAGTA+AGG + chr6_1:6281456-6281475 Msa0871400:intron 30.0%
GATATGGTCATAAAACTTCA+GGG - chr6_1:6281531-6281550 None:intergenic 30.0%
TGATATGGTCATAAAACTTC+AGG - chr6_1:6281532-6281551 None:intergenic 30.0%
!! ATTTAAGGACTAGGTTGATA+TGG - chr6_1:6281547-6281566 None:intergenic 30.0%
TGATATAGTCCTACCATTTA+AGG + chr6_1:6281792-6281811 Msa0871400:intron 30.0%
GATATAGTCCTACCATTTAA+GGG + chr6_1:6281793-6281812 Msa0871400:intron 30.0%
GACCAAATTGAGTATTTGAT+CGG + chr6_1:6281815-6281834 Msa0871400:intron 30.0%
AACCGATCAAATACTCAATT+TGG - chr6_1:6281820-6281839 None:intergenic 30.0%
GTGACAAATTCATCCTTAAA+TGG - chr6_1:6281899-6281918 None:intergenic 30.0%
!!! CTCAACCTTACTTTTTTCAT+TGG + chr6_1:6281971-6281990 Msa0871400:intron 30.0%
TTGCAGATATTGAATGTTGA+TGG + chr6_1:6282174-6282193 Msa0871400:intron 30.0%
! TTTAGCACATGTATTTTACC+TGG - chr6_1:6282221-6282240 None:intergenic 30.0%
AAAGTTATAGATGCTTCTCT+AGG + chr6_1:6282482-6282501 Msa0871400:intron 30.0%
AACTATGAAAAATGACCTTC+AGG - chr6_1:6282550-6282569 None:intergenic 30.0%
!! GTTTCTTGTATCGTTTTTCA+TGG + chr6_1:6282567-6282586 Msa0871400:intron 30.0%
TTTATTGCAGGAACAACAAT+TGG + chr6_1:6282811-6282830 Msa0871400:CDS 30.0%
AATTCGTGTCCTCTTGAATT+CGG + chr6_1:6281214-6281233 Msa0871400:CDS 35.0%
! TTTGTTATCCCGAATTCAAG+AGG - chr6_1:6281226-6281245 None:intergenic 35.0%
TCGGGATAACAAAAAGATTC+TGG + chr6_1:6281233-6281252 Msa0871400:CDS 35.0%
!! AAGATTCTGGAGCTATTTGT+TGG + chr6_1:6281246-6281265 Msa0871400:CDS 35.0%
TTTCGTATGTAGGGTTTAAG+TGG + chr6_1:6281362-6281381 Msa0871400:intron 35.0%
TTCGTATGTAGGGTTTAAGT+GGG + chr6_1:6281363-6281382 Msa0871400:intron 35.0%
GTTTAAGTGGGGATATCTTA+TGG + chr6_1:6281375-6281394 Msa0871400:intron 35.0%
! GACTGCACATTTGAAATTAC+AGG + chr6_1:6281446-6281465 Msa0871400:intron 35.0%
TAAAACTTCAGGGACCAAAT+TGG - chr6_1:6281521-6281540 None:intergenic 35.0%
! TTTGTCCTGTCTTTAGTCTT+TGG - chr6_1:6281710-6281729 None:intergenic 35.0%
TATTGCTAATTTAGGGGACT+AGG + chr6_1:6281768-6281787 Msa0871400:intron 35.0%
AATTTGGTCCCTTAAATGGT+AGG - chr6_1:6281804-6281823 None:intergenic 35.0%
ACTCAATTTGGTCCCTTAAA+TGG - chr6_1:6281808-6281827 None:intergenic 35.0%
GCTAATAAAGGGTCCATTTA+AGG + chr6_1:6281883-6281902 Msa0871400:intron 35.0%
AGGAAGATAACCTCAGATAA+GGG - chr6_1:6281935-6281954 None:intergenic 35.0%
AAGGAAGATAACCTCAGATA+AGG - chr6_1:6281936-6281955 None:intergenic 35.0%
TGTTCAAATCTGTTCTTTGC+TGG + chr6_1:6282061-6282080 Msa0871400:CDS 35.0%
! TTGAATGTTGATGGAGTAAC+TGG + chr6_1:6282183-6282202 Msa0871400:CDS 35.0%
! GGGTCACACCAATTTTATAT+GGG + chr6_1:6282368-6282387 Msa0871400:intron 35.0%
ATGTGGGTCCCATATAAAAT+TGG - chr6_1:6282379-6282398 None:intergenic 35.0%
TACAAGTGTAGCATAACTTG+AGG + chr6_1:6282680-6282699 Msa0871400:intron 35.0%
ACAAGTGTAGCATAACTTGA+GGG + chr6_1:6282681-6282700 Msa0871400:intron 35.0%
TCAGTGGTTCATGCAAAAAA+TGG - chr6_1:6282708-6282727 None:intergenic 35.0%
CGTTCTATATACAGAATGCT+TGG + chr6_1:6282779-6282798 Msa0871400:intron 35.0%
TATATACAGAATGCTTGGTC+AGG + chr6_1:6282784-6282803 Msa0871400:intron 35.0%
AATTCGTGTCCTCTTGAATT+CGG + chr6_1:6281214-6281233 Msa0871400:CDS 35.0%
! TTTGTTATCCCGAATTCAAG+AGG - chr6_1:6281226-6281245 None:intergenic 35.0%
TCGGGATAACAAAAAGATTC+TGG + chr6_1:6281233-6281252 Msa0871400:CDS 35.0%
!! AAGATTCTGGAGCTATTTGT+TGG + chr6_1:6281246-6281265 Msa0871400:CDS 35.0%
TTTCGTATGTAGGGTTTAAG+TGG + chr6_1:6281362-6281381 Msa0871400:intron 35.0%
TTCGTATGTAGGGTTTAAGT+GGG + chr6_1:6281363-6281382 Msa0871400:intron 35.0%
GTTTAAGTGGGGATATCTTA+TGG + chr6_1:6281375-6281394 Msa0871400:intron 35.0%
! GACTGCACATTTGAAATTAC+AGG + chr6_1:6281446-6281465 Msa0871400:intron 35.0%
TAAAACTTCAGGGACCAAAT+TGG - chr6_1:6281521-6281540 None:intergenic 35.0%
! TTTGTCCTGTCTTTAGTCTT+TGG - chr6_1:6281710-6281729 None:intergenic 35.0%
TATTGCTAATTTAGGGGACT+AGG + chr6_1:6281768-6281787 Msa0871400:intron 35.0%
AATTTGGTCCCTTAAATGGT+AGG - chr6_1:6281804-6281823 None:intergenic 35.0%
ACTCAATTTGGTCCCTTAAA+TGG - chr6_1:6281808-6281827 None:intergenic 35.0%
GCTAATAAAGGGTCCATTTA+AGG + chr6_1:6281883-6281902 Msa0871400:intron 35.0%
AGGAAGATAACCTCAGATAA+GGG - chr6_1:6281935-6281954 None:intergenic 35.0%
AAGGAAGATAACCTCAGATA+AGG - chr6_1:6281936-6281955 None:intergenic 35.0%
TGTTCAAATCTGTTCTTTGC+TGG + chr6_1:6282061-6282080 Msa0871400:CDS 35.0%
! TTGAATGTTGATGGAGTAAC+TGG + chr6_1:6282183-6282202 Msa0871400:CDS 35.0%
! GGGTCACACCAATTTTATAT+GGG + chr6_1:6282368-6282387 Msa0871400:intron 35.0%
ATGTGGGTCCCATATAAAAT+TGG - chr6_1:6282379-6282398 None:intergenic 35.0%
TACAAGTGTAGCATAACTTG+AGG + chr6_1:6282680-6282699 Msa0871400:intron 35.0%
ACAAGTGTAGCATAACTTGA+GGG + chr6_1:6282681-6282700 Msa0871400:intron 35.0%
TCAGTGGTTCATGCAAAAAA+TGG - chr6_1:6282708-6282727 None:intergenic 35.0%
CGTTCTATATACAGAATGCT+TGG + chr6_1:6282779-6282798 Msa0871400:intron 35.0%
TATATACAGAATGCTTGGTC+AGG + chr6_1:6282784-6282803 Msa0871400:intron 35.0%
ATTCGTGTCCTCTTGAATTC+GGG + chr6_1:6281215-6281234 Msa0871400:CDS 40.0%
TCGTATGTAGGGTTTAAGTG+GGG + chr6_1:6281364-6281383 Msa0871400:intron 40.0%
TCCTTCCAAAGACTAAAGAC+AGG + chr6_1:6281702-6281721 Msa0871400:intron 40.0%
! TCCTGTCTTTAGTCTTTGGA+AGG - chr6_1:6281706-6281725 None:intergenic 40.0%
AAGGATGAATTTGTCACTGC+TGG + chr6_1:6281902-6281921 Msa0871400:intron 40.0%
AAATCTGTTCTTTGCTGGAG+AGG + chr6_1:6282066-6282085 Msa0871400:CDS 40.0%
! AATGTTGATGGAGTAACTGG+TGG + chr6_1:6282186-6282205 Msa0871400:CDS 40.0%
AACTGGTGGTTTCAATTTCC+AGG + chr6_1:6282200-6282219 Msa0871400:CDS 40.0%
TAAAATTGGTGTGACCCGTA+TGG - chr6_1:6282365-6282384 None:intergenic 40.0%
! CGGGTCACACCAATTTTATA+TGG + chr6_1:6282367-6282386 Msa0871400:intron 40.0%
AAAAATGACCTTCAGGTCGA+TGG - chr6_1:6282543-6282562 None:intergenic 40.0%
ATTGCAGGAACAACAATTGG+TGG + chr6_1:6282814-6282833 Msa0871400:CDS 40.0%
ATTCGTGTCCTCTTGAATTC+GGG + chr6_1:6281215-6281234 Msa0871400:CDS 40.0%
TCGTATGTAGGGTTTAAGTG+GGG + chr6_1:6281364-6281383 Msa0871400:intron 40.0%
TCCTTCCAAAGACTAAAGAC+AGG + chr6_1:6281702-6281721 Msa0871400:intron 40.0%
! TCCTGTCTTTAGTCTTTGGA+AGG - chr6_1:6281706-6281725 None:intergenic 40.0%
AAGGATGAATTTGTCACTGC+TGG + chr6_1:6281902-6281921 Msa0871400:intron 40.0%
AAATCTGTTCTTTGCTGGAG+AGG + chr6_1:6282066-6282085 Msa0871400:CDS 40.0%
! AATGTTGATGGAGTAACTGG+TGG + chr6_1:6282186-6282205 Msa0871400:CDS 40.0%
AACTGGTGGTTTCAATTTCC+AGG + chr6_1:6282200-6282219 Msa0871400:CDS 40.0%
TAAAATTGGTGTGACCCGTA+TGG - chr6_1:6282365-6282384 None:intergenic 40.0%
! CGGGTCACACCAATTTTATA+TGG + chr6_1:6282367-6282386 Msa0871400:intron 40.0%
AAAAATGACCTTCAGGTCGA+TGG - chr6_1:6282543-6282562 None:intergenic 40.0%
ATTGCAGGAACAACAATTGG+TGG + chr6_1:6282814-6282833 Msa0871400:CDS 40.0%
! GAGCTATTTGTTGGAACGAC+AGG + chr6_1:6281255-6281274 Msa0871400:CDS 45.0%
GATGAATTTGTCACTGCTGG+TGG + chr6_1:6281905-6281924 Msa0871400:intron 45.0%
TATCCAAACCATCGACCTGA+AGG + chr6_1:6282532-6282551 Msa0871400:intron 45.0%
! ACCACTGACCCATTGATTGA+TGG + chr6_1:6282720-6282739 Msa0871400:intron 45.0%
ACCATCAATCAATGGGTCAG+TGG - chr6_1:6282724-6282743 None:intergenic 45.0%
ATACAGAATGCTTGGTCAGG+AGG + chr6_1:6282787-6282806 Msa0871400:intron 45.0%
TGGTCAGGAGGATTTATTGC+AGG + chr6_1:6282799-6282818 Msa0871400:CDS 45.0%
! GAGCTATTTGTTGGAACGAC+AGG + chr6_1:6281255-6281274 Msa0871400:CDS 45.0%
GATGAATTTGTCACTGCTGG+TGG + chr6_1:6281905-6281924 Msa0871400:intron 45.0%
TATCCAAACCATCGACCTGA+AGG + chr6_1:6282532-6282551 Msa0871400:intron 45.0%
! ACCACTGACCCATTGATTGA+TGG + chr6_1:6282720-6282739 Msa0871400:intron 45.0%
ACCATCAATCAATGGGTCAG+TGG - chr6_1:6282724-6282743 None:intergenic 45.0%
ATACAGAATGCTTGGTCAGG+AGG + chr6_1:6282787-6282806 Msa0871400:intron 45.0%
TGGTCAGGAGGATTTATTGC+AGG + chr6_1:6282799-6282818 Msa0871400:CDS 45.0%
! TGGTGGTGTTCCCTTATCTG+AGG + chr6_1:6281922-6281941 Msa0871400:intron 50.0%
TGACCTTCAGGTCGATGGTT+TGG - chr6_1:6282538-6282557 None:intergenic 50.0%
! TGGTGGTGTTCCCTTATCTG+AGG + chr6_1:6281922-6281941 Msa0871400:intron 50.0%
TGACCTTCAGGTCGATGGTT+TGG - chr6_1:6282538-6282557 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6281199 6282861 6281199 ID=Msa0871400;Name=Msa0871400
chr6_1 mRNA 6281199 6282861 6281199 ID=Msa0871400-mRNA-1;Parent=Msa0871400;Name=Msa0871400-mRNA-1;_AED=0.76;_eAED=0.76;_QI=0|0.33|0.5|0.75|1|1|4|0|81
chr6_1 exon 6281199 6281276 6281199 ID=Msa0871400-mRNA-1:exon:2007;Parent=Msa0871400-mRNA-1
chr6_1 exon 6282031 6282087 6282031 ID=Msa0871400-mRNA-1:exon:2008;Parent=Msa0871400-mRNA-1
chr6_1 exon 6282180 6282221 6282180 ID=Msa0871400-mRNA-1:exon:2009;Parent=Msa0871400-mRNA-1
chr6_1 exon 6282793 6282861 6282793 ID=Msa0871400-mRNA-1:exon:2010;Parent=Msa0871400-mRNA-1
chr6_1 CDS 6281199 6281276 6281199 ID=Msa0871400-mRNA-1:cds;Parent=Msa0871400-mRNA-1
chr6_1 CDS 6282031 6282087 6282031 ID=Msa0871400-mRNA-1:cds;Parent=Msa0871400-mRNA-1
chr6_1 CDS 6282180 6282221 6282180 ID=Msa0871400-mRNA-1:cds;Parent=Msa0871400-mRNA-1
chr6_1 CDS 6282793 6282861 6282793 ID=Msa0871400-mRNA-1:cds;Parent=Msa0871400-mRNA-1
Gene Sequence

>Msa0871400

AAACAAAAAGTGGTCAATTCGTGTCCTCTTGAATTCGGGATAACAAAAAGATTCTGGAGCTATTTGTTGGAACGACAGGTTTCACTAAATACAATGAAAAGCAAAATTTGTTCAAATCTGTTCTTTGCTGGAGAGATATTGAATGTTGATGGAGTAACTGGTGGTTTCAATTTCCAGAATGCTTGGTCAGGAGGATTTATTGCAGGAACAACAATTGGTGGATTAGCACTTGACTCTTGTGTTTAG

Protein sequence

>Msa0871400

KQKVVNSCPLEFGITKRFWSYLLERQVSLNTMKSKICSNLFFAGEILNVDGVTGGFNFQNAWSGGFIAGTTIGGLALDSCV*