AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167110 MtrunA17_Chr7g0267431 96.602 412 0 1 1 398 1 412 0.0 821
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167110 AT3G09180.3 54.430 395 150 6 21 398 21 402 5.28e-147 423
Msa1167110 AT3G09180.1 54.430 395 150 6 21 398 21 402 5.28e-147 423
Msa1167110 AT3G09180.2 57.396 338 124 5 21 341 21 355 2.67e-133 386

Find 128 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAGTCCACCGGCCTTAT+TGG 0.155742 7_4:-59306586 Msa1167110:CDS
CAAAATGTTCCTATCTCTTA+TGG 0.214790 7_4:+59304751 None:intergenic
GATGGGCCTTTACCGTTAAA+AGG 0.225457 7_4:-59310635 Msa1167110:five_prime_UTR
GATCACACTGACGATTATTT+AGG 0.244154 7_4:-59306463 Msa1167110:intron
GAAAAGGAAAACTTCCAATA+AGG 0.292755 7_4:+59306572 None:intergenic
TGGAGGAGGGAGGAGGAGTG+GGG 0.303544 7_4:+59310485 None:intergenic
TCCAATAAGGCCGGTGGACT+GGG 0.326295 7_4:+59306585 None:intergenic
CTGCATCTATTCTCTTAAAA+TGG 0.328141 7_4:-59304864 Msa1167110:three_prime_UTR
ATTCTGGTCCTTTGAAGATA+TGG 0.337719 7_4:+59306535 None:intergenic
CCATAGTAGTATCTGAATTC+TGG 0.351814 7_4:+59306519 None:intergenic
TTCCAATAAGGCCGGTGGAC+TGG 0.358151 7_4:+59306584 None:intergenic
AGAAAACTCATTACTTCCTT+AGG 0.361665 7_4:+59308328 None:intergenic
ACTACTATGGCTTATCATAT+TGG 0.365286 7_4:-59306506 Msa1167110:CDS
TCTATGACTGCAACCTTCTC+TGG 0.369638 7_4:+59308118 None:intergenic
GGTGGAGGAGGGAGGAGGAG+TGG 0.378647 7_4:+59310483 None:intergenic
ATAACAACTCTGAAGATAGA+AGG 0.378820 7_4:+59308085 None:intergenic
GAAAAGAAAGCGACAGCATC+GGG 0.384329 7_4:+59308034 None:intergenic
TGTTCCTCAGAACTCTCATT+TGG 0.390911 7_4:+59308193 None:intergenic
AAATATAAACATACCTCGTC+TGG 0.394897 7_4:+59308010 None:intergenic
AGGTGCTTCCGCGGTGGAGG+AGG 0.394926 7_4:+59310471 None:intergenic
TCCAAGGACTGCAGAACATC+TGG 0.396727 7_4:+59308295 None:intergenic
GGAGGAGGGAGGAGGAGTGG+GGG 0.401426 7_4:+59310486 None:intergenic
TAAGCGAAAGTTAGGATCAA+TGG 0.410392 7_4:-59308152 Msa1167110:CDS
GTGGAGGAGGGAGGAGGAGT+GGG 0.415547 7_4:+59310484 None:intergenic
CCAGAATTCAGATACTACTA+TGG 0.418672 7_4:-59306519 Msa1167110:CDS
GTTATATCCTTGCATCCTGC+TGG 0.428885 7_4:-59308067 Msa1167110:CDS
TTCCATCCAGCATGCATAGA+AGG 0.439121 7_4:+59304727 None:intergenic
GGAAAGGAGCTTGAGGAAGC+TGG 0.440517 7_4:-59310147 Msa1167110:CDS
ACCAGATGTTCTGCAGTCCT+TGG 0.443020 7_4:-59308296 Msa1167110:CDS
GGTTCTAGTAAGCGAAAGTT+AGG 0.445637 7_4:-59308160 Msa1167110:CDS
ATCATCGCCGACATCCGAAT+TGG 0.448405 7_4:-59310400 Msa1167110:CDS
GGCAGAAGCTCCAGCTTGAC+CGG 0.450352 7_4:+59310017 None:intergenic
CTCAGTCCTAGATTCTCAAT+TGG 0.457021 7_4:+59304539 None:intergenic
TCATGTGTATAGACATATTA+CGG 0.457686 7_4:-59307058 Msa1167110:intron
TAGGCAACAACGGCACCATC+TGG 0.461071 7_4:+59310060 None:intergenic
AGCGACAGCATCGGGATCAA+TGG 0.463919 7_4:+59308042 None:intergenic
AGGACAAAACCATAAGAGAT+AGG 0.464772 7_4:-59304760 Msa1167110:three_prime_UTR
CGACAACTCGCCGGTCAAGC+TGG 0.467324 7_4:-59310027 Msa1167110:CDS
ATAGCTAGAGCAACCTGCTT+CGG 0.468530 7_4:+59310448 None:intergenic
TCCGCGGTGGAGGAGGGAGG+AGG 0.470294 7_4:+59310478 None:intergenic
AAGCGAAAGTTAGGATCAAT+GGG 0.477448 7_4:-59308151 Msa1167110:CDS
TAAATTTGATTGCTTATCCA+TGG 0.477617 7_4:+59306616 None:intergenic
CAGATTCAAAGAAGCGTTGT+GGG 0.479474 7_4:-59308372 Msa1167110:CDS
GTGCCGTTGTTGCCTATGCT+TGG 0.482427 7_4:-59310053 Msa1167110:CDS
CTTCAACTCCATCATCAAGA+TGG 0.482949 7_4:+59308404 None:intergenic
CGGAGGTGCTTCCGCGGTGG+AGG 0.483398 7_4:+59310468 None:intergenic
ATGCCGCTGGTTTGTCCAGA+TGG 0.486924 7_4:-59310075 Msa1167110:CDS
CCTTTGAAGATATGGTTGAC+AGG 0.493358 7_4:+59306543 None:intergenic
TATAATAGAAAATAGTTCAA+GGG 0.497621 7_4:-59304564 Msa1167110:three_prime_UTR
GGTGCTTCCGCGGTGGAGGA+GGG 0.499035 7_4:+59310472 None:intergenic
GGCAGGCAATGATCAATGTC+AGG 0.499471 7_4:+59304785 None:intergenic
ATGGTCTTGAAAATAAAGTC+TGG 0.505478 7_4:+59306738 None:intergenic
TTGGGGATTGCATATGCCGC+TGG 0.506878 7_4:-59310088 Msa1167110:CDS
TTTAAAGACCTTCGATCCCT+CGG 0.507856 7_4:-59310271 Msa1167110:intron
TGTTCTGCAGTCCTTGGAAA+AGG 0.508609 7_4:-59308290 Msa1167110:CDS
AGCTGGAGTTCTTAGTGAAA+CGG 0.510669 7_4:-59310130 Msa1167110:CDS
TTCAACTCCATCATCAAGAT+GGG 0.512069 7_4:+59308405 None:intergenic
AGAAGTCACATTTGAACCTA+AGG 0.514604 7_4:-59308344 Msa1167110:CDS
GTATAATAGAAAATAGTTCA+AGG 0.516031 7_4:-59304565 Msa1167110:three_prime_UTR
GGAGACGATCAGCGCCAATT+CGG 0.516484 7_4:+59310386 None:intergenic
AACGCATACCGAGGGATCGA+AGG 0.518466 7_4:+59310263 None:intergenic
TTCTATTATACATACATGGA+TGG 0.520111 7_4:+59304577 None:intergenic
TATTGTTAGCCCCAGTCCAC+CGG 0.522334 7_4:-59306595 Msa1167110:CDS
CAGAGAAGATAGAGATGTGT+AGG 0.523018 7_4:+59304615 None:intergenic
ATCAGAATACATACATTCAA+AGG 0.532225 7_4:+59304446 None:intergenic
GATGTCGGCGATGATACGTT+CGG 0.535062 7_4:+59310408 None:intergenic
GAAGCAGGTTGCTCTAGCTA+TGG 0.535644 7_4:-59310446 Msa1167110:CDS
CATTGATCATTGCCTGCCAC+AGG 0.545320 7_4:-59304780 Msa1167110:three_prime_UTR
CAGCGATGAATAGAGCTTCG+AGG 0.547357 7_4:+59310365 None:intergenic
AGAACTCTCATTTGGTGAAG+AGG 0.550108 7_4:+59308201 None:intergenic
CTGCTTCGGAGGTGCTTCCG+CGG 0.550284 7_4:+59310462 None:intergenic
GTGGAAGCTATGTGCATGCA+AGG 0.550710 7_4:-59307095 Msa1167110:CDS
GAAGCTCTATTCATCGCTGC+TGG 0.552451 7_4:-59310361 Msa1167110:CDS
CCTGTCAACCATATCTTCAA+AGG 0.552874 7_4:-59306543 Msa1167110:CDS
TCTTTGACGAAAACTTGAAG+AGG 0.553058 7_4:+59310316 None:intergenic
AGAAAAGAAAGCGACAGCAT+CGG 0.557015 7_4:+59308033 None:intergenic
GCTTCCGCGGTGGAGGAGGG+AGG 0.559888 7_4:+59310475 None:intergenic
TTAGTGAAACGGCACGGTCA+CGG 0.562114 7_4:-59310119 Msa1167110:CDS
GCAACAAACGCAGCAAGCCA+CGG 0.564368 7_4:-59310524 Msa1167110:CDS
AACTGCAAATCGAACCTGCA+TGG 0.565160 7_4:+59306719 None:intergenic
GACCTTCTATGCATGCTGGA+TGG 0.565694 7_4:-59304729 Msa1167110:three_prime_UTR
TGAAACGGCACGGTCACGGA+AGG 0.567867 7_4:-59310115 Msa1167110:CDS
AATACAGTGATGTTTCAGCT+TGG 0.576810 7_4:+59306902 None:intergenic
GGTTGAGAAAGTTGCCGCCG+TGG 0.577460 7_4:+59310507 None:intergenic
AGGAAAACTTCCAATAAGGC+CGG 0.581505 7_4:+59306576 None:intergenic
ATCAGCGCCAATTCGGATGT+CGG 0.583731 7_4:+59310393 None:intergenic
TCGGGATCAATGGAACCAGC+AGG 0.583768 7_4:+59308052 None:intergenic
TGGAAGCTATGTGCATGCAA+GGG 0.588510 7_4:-59307094 Msa1167110:CDS
TTAAAATGGCGCATATCACA+TGG 0.589772 7_4:-59304850 Msa1167110:three_prime_UTR
AATGGAACCAGCAGGATGCA+AGG 0.589922 7_4:+59308060 None:intergenic
GGGAATGGTTGCTCCAGAGA+AGG 0.594303 7_4:-59308131 Msa1167110:CDS
AACATCACTGTATTCTCTTG+TGG 0.595886 7_4:-59306893 Msa1167110:intron
GCTAGAGCAACCTGCTTCGG+AGG 0.598630 7_4:+59310451 None:intergenic
CTTCGGAGGTGCTTCCGCGG+TGG 0.602149 7_4:+59310465 None:intergenic
GCTGCTGGTCAACCTCATCA+AGG 0.602170 7_4:-59310346 Msa1167110:CDS
ATAATAGAAAATAGTTCAAG+GGG 0.603340 7_4:-59304563 Msa1167110:three_prime_UTR
TAACAACTCTGAAGATAGAA+GGG 0.606373 7_4:+59308086 None:intergenic
AAAGTTAGGATCAATGGGAA+TGG 0.607147 7_4:-59308146 Msa1167110:CDS
TTTGATAGGAAAGGAGCTTG+AGG 0.608239 7_4:-59310154 Msa1167110:intron
GGAAGCTATGTGCATGCAAG+GGG 0.609425 7_4:-59307093 Msa1167110:CDS
ACAAACGCAGCAAGCCACGG+CGG 0.611371 7_4:-59310521 Msa1167110:CDS
TCAGATTCAAAGAAGCGTTG+TGG 0.612312 7_4:-59308373 Msa1167110:CDS
GCTTGGAAACGACAACTCGC+CGG 0.615503 7_4:-59310036 Msa1167110:CDS
TGTATGTATTCTGATTCTGA+TGG 0.620676 7_4:-59304438 Msa1167110:three_prime_UTR
TCAGTGTGATCATACTTCCT+CGG 0.622502 7_4:+59306475 None:intergenic
CCAATAAGGCCGGTGGACTG+GGG 0.622914 7_4:+59306586 None:intergenic
AGAGGCTTATTGCCTTGATG+AGG 0.633931 7_4:+59310334 None:intergenic
AAGCTATGTGCATGCAAGGG+GGG 0.635832 7_4:-59307091 Msa1167110:CDS
GAGTTGTCGTTTCCAAGCAT+AGG 0.637421 7_4:+59310041 None:intergenic
TCAACTCCATCATCAAGATG+GGG 0.643677 7_4:+59308406 None:intergenic
TCCTCCTCCCTCCTCCACCG+CGG 0.648019 7_4:-59310479 Msa1167110:CDS
CAATTGAGAATCTAGGACTG+AGG 0.651584 7_4:-59304538 Msa1167110:three_prime_UTR
AAAACTTCCAATAAGGCCGG+TGG 0.654863 7_4:+59306579 None:intergenic
TTCACCAAATGAGAGTTCTG+AGG 0.659511 7_4:-59308197 Msa1167110:CDS
CAACTCCATCATCAAGATGG+GGG 0.661154 7_4:+59308407 None:intergenic
ATTTGGTGAAGAGGTGAGTG+TGG 0.667142 7_4:+59308210 None:intergenic
TCTGAGGAACATAACTATCG+TGG 0.670954 7_4:-59308181 Msa1167110:CDS
GGTGGATGCAAATGTTGCTG+TGG 0.681304 7_4:-59304491 Msa1167110:three_prime_UTR
ATGTATTCTGATTCTGATGG+AGG 0.681461 7_4:-59304435 Msa1167110:three_prime_UTR
GCTCTAGCTATGGACAAACT+CGG 0.684631 7_4:-59310436 Msa1167110:CDS
TTTCCAAGCATAGGCAACAA+CGG 0.687340 7_4:+59310050 None:intergenic
GCACCATCTGGACAAACCAG+CGG 0.691637 7_4:+59310072 None:intergenic
GAGTTCTTAGTGAAACGGCA+CGG 0.692244 7_4:-59310125 Msa1167110:CDS
TCAGGAAATGAATTAGCACA+TGG 0.695752 7_4:-59304908 Msa1167110:intron
TCATATTGGCTGCATCTCCG+AGG 0.702445 7_4:-59306492 Msa1167110:CDS
GAAGCTATGTGCATGCAAGG+GGG 0.706512 7_4:-59307092 Msa1167110:CDS
GCAGGCAATGATCAATGTCA+GGG 0.706843 7_4:+59304786 None:intergenic
TAATAGAAAATAGTTCAAGG+GGG 0.757693 7_4:-59304562 Msa1167110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTTTTTAAAAAA+AGG - chr7_4:59309341-59309360 Msa1167110:intron 0.0%
!!! TTTTTAAATATGAAAGAAAT+TGG - chr7_4:59305662-59305681 Msa1167110:intron 10.0%
!!! AATTTGTTCTTAATTTAAAA+AGG - chr7_4:59306195-59306214 Msa1167110:intron 10.0%
!! AATCAGAAAAAATATAATAT+AGG - chr7_4:59306253-59306272 Msa1167110:intron 10.0%
!! GAATTAAGTAATATTAAATT+AGG - chr7_4:59306426-59306445 Msa1167110:intron 10.0%
!!! AAAAGTAACATTTTTTTTAA+GGG + chr7_4:59309437-59309456 None:intergenic 10.0%
!!! AAAAAGTAACATTTTTTTTA+AGG + chr7_4:59309438-59309457 None:intergenic 10.0%
!!! AACTTTTGTTTAATTTTTTT+TGG - chr7_4:59309531-59309550 Msa1167110:intron 10.0%
!! TAAATGTAAAATTACATAAA+AGG + chr7_4:59309698-59309717 None:intergenic 10.0%
!!! ATTAATTAATTTTAATCTTC+AGG - chr7_4:59310119-59310138 Msa1167110:CDS 10.0%
!!! GAAAATATTATTTTTCCTTT+AGG - chr7_4:59305284-59305303 Msa1167110:intron 15.0%
!! AAAAAATGTATAAATCAATC+CGG + chr7_4:59305642-59305661 None:intergenic 15.0%
!! TATAACATAAAGGATTAAAT+CGG + chr7_4:59305753-59305772 None:intergenic 15.0%
!! TCTTAATTTAAAAAGGATAA+TGG - chr7_4:59306202-59306221 Msa1167110:intron 15.0%
!!! GTTTACATTTTATAACATAA+AGG - chr7_4:59306226-59306245 Msa1167110:intron 15.0%
!! TTTCCTAATATTCATTATAT+GGG - chr7_4:59307071-59307090 Msa1167110:CDS 15.0%
!! AAATAGCTATTTATTACAAA+GGG + chr7_4:59309262-59309281 None:intergenic 15.0%
!! AAAATAGCTATTTATTACAA+AGG + chr7_4:59309263-59309282 None:intergenic 15.0%
!! AATTAAATTTCAGATTTCAT+TGG - chr7_4:59309313-59309332 Msa1167110:intron 15.0%
!!! CAATTAACTTTTTTTTAAGA+GGG - chr7_4:59309500-59309519 Msa1167110:intron 15.0%
!!! TTGTTTAATTTTTTTTGGAA+AGG - chr7_4:59309536-59309555 Msa1167110:intron 15.0%
!!! TATTTTCTATTATACATACA+TGG + chr7_4:59310475-59310494 None:intergenic 15.0%
!! TATAATAGAAAATAGTTCAA+GGG - chr7_4:59310481-59310500 Msa1167110:CDS 15.0%
!!! TGATTTTTTTCGATTTTGAT+AGG - chr7_4:59304877-59304896 Msa1167110:three_prime_UTR 20.0%
!! CTAAAAATGATTAATTCCAT+TGG + chr7_4:59305261-59305280 None:intergenic 20.0%
!! ATAACATAAAGGATTAAATC+GGG + chr7_4:59305752-59305771 None:intergenic 20.0%
!!! GTTGACATTTTATAACATAA+AGG + chr7_4:59305763-59305782 None:intergenic 20.0%
!!! GGGATTTTTTCAATTAAATT+TGG + chr7_4:59305868-59305887 None:intergenic 20.0%
!!! TTTCTTTGTTTCTTTTGTTT+GGG + chr7_4:59306005-59306024 None:intergenic 20.0%
!!! TTTTCTTTGTTTCTTTTGTT+TGG + chr7_4:59306006-59306025 None:intergenic 20.0%
!! TATTACCTGAAATTAAGTTA+AGG - chr7_4:59306283-59306302 Msa1167110:intron 20.0%
!! ATTACCTGAAATTAAGTTAA+GGG - chr7_4:59306284-59306303 Msa1167110:intron 20.0%
!! AGTAGATAATATATACTCTT+GGG - chr7_4:59306488-59306507 Msa1167110:CDS 20.0%
!!! AAAGTTGAAATTTTCACATT+TGG + chr7_4:59306786-59306805 None:intergenic 20.0%
!!! TGAAAATTTCAACTTTTGAA+AGG - chr7_4:59306790-59306809 Msa1167110:intron 20.0%
!! CTTTCCTAATATTCATTATA+TGG - chr7_4:59307070-59307089 Msa1167110:CDS 20.0%
!! TTCCTAATATTCATTATATG+GGG - chr7_4:59307072-59307091 Msa1167110:CDS 20.0%
!! TCGTATTATAAATAATGACT+CGG - chr7_4:59307117-59307136 Msa1167110:intron 20.0%
!! TTCAAAATAACTAAAGTCTA+TGG + chr7_4:59307486-59307505 None:intergenic 20.0%
!!! ACTTTAGTTATTTTGAATCA+TGG - chr7_4:59307489-59307508 Msa1167110:intron 20.0%
!!! AAGATGAAATTTAAGTTGTA+TGG + chr7_4:59307641-59307660 None:intergenic 20.0%
!! AAATAAGTCATAAACAACAA+GGG + chr7_4:59307817-59307836 None:intergenic 20.0%
!! AAAATAAGTCATAAACAACA+AGG + chr7_4:59307818-59307837 None:intergenic 20.0%
!!! TCATATAGAAATTTTTGATC+TGG + chr7_4:59308353-59308372 None:intergenic 20.0%
!! TAGACATCAGTAATAATTTA+AGG + chr7_4:59308774-59308793 None:intergenic 20.0%
!! TAAATTATTACTGATGTCTA+CGG - chr7_4:59308774-59308793 Msa1167110:intron 20.0%
!! TTGAATAATAAGGGTAAATA+TGG - chr7_4:59308924-59308943 Msa1167110:intron 20.0%
!!! GCAATTAACTTTTTTTTAAG+AGG - chr7_4:59309499-59309518 Msa1167110:intron 20.0%
!! GTATAATAGAAAATAGTTCA+AGG - chr7_4:59310480-59310499 Msa1167110:CDS 20.0%
!! ATAATAGAAAATAGTTCAAG+GGG - chr7_4:59310482-59310501 Msa1167110:CDS 20.0%
!! ATGTAAAAAGTTAAAAGATG+TGG - chr7_4:59310533-59310552 Msa1167110:exon 20.0%
!!! TAGTATTTTTTCGTACAACT+CGG + chr7_4:59304442-59304461 None:intergenic 25.0%
!!! TTTTTCGATTTTGATAGGAA+AGG - chr7_4:59304882-59304901 Msa1167110:three_prime_UTR 25.0%
! CGGGAAAAAAAAAAAGATAA+AGG + chr7_4:59305733-59305752 None:intergenic 25.0%
! TTGTATGGTGAAGATAATAT+GGG + chr7_4:59305835-59305854 None:intergenic 25.0%
! ATTGTATGGTGAAGATAATA+TGG + chr7_4:59305836-59305855 None:intergenic 25.0%
!!! TTTGGATTTCTAGAATTGTA+TGG + chr7_4:59305850-59305869 None:intergenic 25.0%
! GATTAAGGTTATGTAGAAAA+TGG + chr7_4:59305905-59305924 None:intergenic 25.0%
!!! GTTGATTTTATTGATGAGTT+GGG + chr7_4:59305935-59305954 None:intergenic 25.0%
!!! TGTTTTTTTGCTTTTGGTTA+TGG + chr7_4:59305957-59305976 None:intergenic 25.0%
!!! TATGGTTGTTTTTTTGCTTT+TGG + chr7_4:59305963-59305982 None:intergenic 25.0%
! AAAGAAAATCGAAGAAGAAA+GGG - chr7_4:59306018-59306037 Msa1167110:intron 25.0%
!! TCTTATTTCAGATTTGATTC+AGG - chr7_4:59306450-59306469 Msa1167110:intron 25.0%
! CAGTAGATAATATATACTCT+TGG - chr7_4:59306487-59306506 Msa1167110:CDS 25.0%
! TAAAATAAGGATTGCAATGT+TGG - chr7_4:59307251-59307270 Msa1167110:intron 25.0%
!! ACTAGATCAAAAATTTTCAG+AGG + chr7_4:59307426-59307445 None:intergenic 25.0%
!! TGTTAATTTTCACTGTTCTT+TGG - chr7_4:59307665-59307684 Msa1167110:intron 25.0%
! TCATGTGTATAGACATATTA+CGG - chr7_4:59307987-59308006 Msa1167110:intron 25.0%
! TAAATTTGATTGCTTATCCA+TGG + chr7_4:59308432-59308451 None:intergenic 25.0%
!!! AGCTTTTGCTTTGAATAATA+AGG - chr7_4:59308914-59308933 Msa1167110:intron 25.0%
!!! GCTTTTGCTTTGAATAATAA+GGG - chr7_4:59308915-59308934 Msa1167110:intron 25.0%
! TTGACAAAATAAGTTCTGTT+TGG - chr7_4:59309074-59309093 Msa1167110:intron 25.0%
! TTATTACAAAGGGTAAACAT+GGG + chr7_4:59309252-59309271 None:intergenic 25.0%
! TTTATTACAAAGGGTAAACA+TGG + chr7_4:59309253-59309272 None:intergenic 25.0%
!! AAAGTGTTTGGTAAAAATAG+CGG + chr7_4:59309734-59309753 None:intergenic 25.0%
!! GATAAGCTAATTAAAGTGTT+TGG + chr7_4:59309746-59309765 None:intergenic 25.0%
!! CTTTAAAAATTACAATCAGC+TGG + chr7_4:59310347-59310366 None:intergenic 25.0%
!! CAGCTGATTGTAATTTTTAA+AGG - chr7_4:59310345-59310364 Msa1167110:CDS 25.0%
! TTCTATTATACATACATGGA+TGG + chr7_4:59310471-59310490 None:intergenic 25.0%
! TAATAGAAAATAGTTCAAGG+GGG - chr7_4:59310483-59310502 Msa1167110:CDS 25.0%
! TAAAAAGTTAAAAGATGTGG+TGG - chr7_4:59310536-59310555 Msa1167110:exon 25.0%
! ATCAGAATACATACATTCAA+AGG + chr7_4:59310602-59310621 None:intergenic 25.0%
TACGAAAAAATACTAACCGA+GGG - chr7_4:59304447-59304466 Msa1167110:three_prime_UTR 30.0%
ATTCCTATCTAACTACAGAA+GGG + chr7_4:59305218-59305237 None:intergenic 30.0%
TCCAAAGAAAAAAGAACCAA+TGG - chr7_4:59305242-59305261 Msa1167110:intron 30.0%
!!! TCCATTGGTTCTTTTTTCTT+TGG + chr7_4:59305246-59305265 None:intergenic 30.0%
! ATTGTATTTCTACACAACTC+AGG + chr7_4:59305447-59305466 None:intergenic 30.0%
TGTTGTAGATTGTTAATGCA+AGG - chr7_4:59305489-59305508 Msa1167110:intron 30.0%
GTTGTAGATTGTTAATGCAA+GGG - chr7_4:59305490-59305509 Msa1167110:intron 30.0%
! TATGTAGAAAATGGACTCAT+GGG + chr7_4:59305896-59305915 None:intergenic 30.0%
! TTATGTAGAAAATGGACTCA+TGG + chr7_4:59305897-59305916 None:intergenic 30.0%
GAGTTGGGAATAAATGATTA+AGG + chr7_4:59305920-59305939 None:intergenic 30.0%
!! GGTTGATTTTATTGATGAGT+TGG + chr7_4:59305936-59305955 None:intergenic 30.0%
!! TTGTTTCTTTTGTTTGGGTA+CGG + chr7_4:59306000-59306019 None:intergenic 30.0%
CAAAGAAAATCGAAGAAGAA+AGG - chr7_4:59306017-59306036 Msa1167110:intron 30.0%
! TGAAGATCCTTTTATGTTGT+TGG - chr7_4:59306051-59306070 Msa1167110:intron 30.0%
!! GAGTTTTGTGATGATTTTTC+TGG - chr7_4:59306152-59306171 Msa1167110:intron 30.0%
TTGTCCCTTAACTTAATTTC+AGG + chr7_4:59306291-59306310 None:intergenic 30.0%
TTGCCAAAGAAACTCTATTA+AGG - chr7_4:59306322-59306341 Msa1167110:intron 30.0%
TATTTCAGATTTGATTCAGG+TGG - chr7_4:59306453-59306472 Msa1167110:intron 30.0%
TATATACTCTTGGGATTTGT+CGG - chr7_4:59306497-59306516 Msa1167110:CDS 30.0%
! TTAGGCTTTTGAATGATTTC+AGG - chr7_4:59306574-59306593 Msa1167110:CDS 30.0%
AGAAAACTCATTACTTCCTT+AGG + chr7_4:59306720-59306739 None:intergenic 30.0%
! AGGAAGTAATGAGTTTTCTA+AGG - chr7_4:59306721-59306740 Msa1167110:intron 30.0%
!! AATTTCAACTTTTGAAAGGC+TGG - chr7_4:59306794-59306813 Msa1167110:intron 30.0%
! TAACAACTCTGAAGATAGAA+GGG + chr7_4:59306962-59306981 None:intergenic 30.0%
! ATAACAACTCTGAAGATAGA+AGG + chr7_4:59306963-59306982 None:intergenic 30.0%
AAATATAAACATACCTCGTC+TGG + chr7_4:59307038-59307057 None:intergenic 30.0%
AGGTATGTTTATATTTACCG+TGG - chr7_4:59307042-59307061 Msa1167110:intron 30.0%
ATATTAGGAAAGACAAACCA+CGG + chr7_4:59307062-59307081 None:intergenic 30.0%
CACCCCATATAATGAATATT+AGG + chr7_4:59307077-59307096 None:intergenic 30.0%
TATCCAGAACCAGTAAAATA+AGG - chr7_4:59307238-59307257 Msa1167110:intron 30.0%
!!! AATCCTTATTTTACTGGTTC+TGG + chr7_4:59307244-59307263 None:intergenic 30.0%
!!! CATTGCAATCCTTATTTTAC+TGG + chr7_4:59307250-59307269 None:intergenic 30.0%
GGATAATGAAAAGATGCAAT+AGG - chr7_4:59307272-59307291 Msa1167110:intron 30.0%
! ATTTTTAACCACGATGTTAC+AGG + chr7_4:59307522-59307541 None:intergenic 30.0%
AAAAGATATCCTGCAAAACA+AGG + chr7_4:59307793-59307812 None:intergenic 30.0%
GTATAGACATATTACGGTAA+TGG - chr7_4:59307993-59308012 Msa1167110:intron 30.0%
TGATGACTTCTAACCAAAAT+AGG + chr7_4:59308212-59308231 None:intergenic 30.0%
! ATGGTCTTGAAAATAAAGTC+TGG + chr7_4:59308310-59308329 None:intergenic 30.0%
GAAAAGGAAAACTTCCAATA+AGG + chr7_4:59308476-59308495 None:intergenic 30.0%
ACTACTATGGCTTATCATAT+TGG - chr7_4:59308539-59308558 Msa1167110:intron 30.0%
! GCTTCTGAAAAATAGCTTAT+AGG - chr7_4:59308997-59309016 Msa1167110:intron 30.0%
TAAGCTATAAGCTAGTTATG+TGG + chr7_4:59309038-59309057 None:intergenic 30.0%
! TAAAGTGGTAAGGGTATAAA+TGG + chr7_4:59309222-59309241 None:intergenic 30.0%
!!! GGTTTTAGTTAAAGTGGTAA+GGG + chr7_4:59309231-59309250 None:intergenic 30.0%
!!! AACATGGGTTTTAGTTAAAG+TGG + chr7_4:59309237-59309256 None:intergenic 30.0%
! TACATACTCACGTTATGTTT+TGG - chr7_4:59309377-59309396 Msa1167110:intron 30.0%
TTGACAAAAAAAGCTCTGTT+TGG + chr7_4:59309920-59309939 None:intergenic 30.0%
!!! AGAGCTAAAAGCTCTTTTTT+TGG - chr7_4:59309963-59309982 Msa1167110:intron 30.0%
!!! GAGCTAAAAGCTCTTTTTTT+GGG - chr7_4:59309964-59309983 Msa1167110:intron 30.0%
CTGCATCTATTCTCTTAAAA+TGG - chr7_4:59310181-59310200 Msa1167110:intron 30.0%
! GGATTGAAAGATTGAGTTTT+TGG - chr7_4:59310216-59310235 Msa1167110:intron 30.0%
CAAAATGTTCCTATCTCTTA+TGG + chr7_4:59310297-59310316 None:intergenic 30.0%
TGTATGTATTCTGATTCTGA+TGG - chr7_4:59310607-59310626 Msa1167110:five_prime_UTR 30.0%
! TTTTTCGTACAACTCGGATT+GGG + chr7_4:59304436-59304455 None:intergenic 35.0%
!!! TTTTTTCGTACAACTCGGAT+TGG + chr7_4:59304437-59304456 None:intergenic 35.0%
GTACGAAAAAATACTAACCG+AGG - chr7_4:59304446-59304465 Msa1167110:three_prime_UTR 35.0%
ACGAAAAAATACTAACCGAG+GGG - chr7_4:59304448-59304467 Msa1167110:three_prime_UTR 35.0%
GATGGTAGCAAAAAGATAGT+GGG + chr7_4:59304477-59304496 None:intergenic 35.0%
! TGTTGCATTTGCACTGTTTT+TGG + chr7_4:59304507-59304526 None:intergenic 35.0%
TCTTTGACGAAAACTTGAAG+AGG + chr7_4:59304732-59304751 None:intergenic 35.0%
!!! TTGATTTTGACTTCGCGATT+AGG - chr7_4:59304826-59304845 Msa1167110:three_prime_UTR 35.0%
!!! TGATTTTGACTTCGCGATTA+GGG - chr7_4:59304827-59304846 Msa1167110:three_prime_UTR 35.0%
!! GGTTTGTTTCCACTCTATTT+TGG - chr7_4:59305064-59305083 Msa1167110:intron 35.0%
TTAAGTGTTTGTGTCGTGTT+AGG + chr7_4:59305116-59305135 None:intergenic 35.0%
CACGACACAAACACTTAAAA+CGG - chr7_4:59305118-59305137 Msa1167110:intron 35.0%
TTGAATGTAATCACATGCGT+CGG - chr7_4:59305168-59305187 Msa1167110:intron 35.0%
TTTCCCTTCTGTAGTTAGAT+AGG - chr7_4:59305212-59305231 Msa1167110:intron 35.0%
GATTCCTATCTAACTACAGA+AGG + chr7_4:59305219-59305238 None:intergenic 35.0%
ATGCGCATATATCTTCCTAA+AGG + chr7_4:59305302-59305321 None:intergenic 35.0%
TCGAATTGTTGTATTACCTC+CGG - chr7_4:59305345-59305364 Msa1167110:intron 35.0%
AGTTATCTGACAGCATAACT+TGG + chr7_4:59305412-59305431 None:intergenic 35.0%
ACATGAATAACAATGCCACT+TGG - chr7_4:59305532-59305551 Msa1167110:intron 35.0%
! CATGAATAACAATGCCACTT+GGG - chr7_4:59305533-59305552 Msa1167110:intron 35.0%
! ATGAATAACAATGCCACTTG+GGG - chr7_4:59305534-59305553 Msa1167110:intron 35.0%
CATCATATTCATGCTCTAGT+CGG - chr7_4:59305572-59305591 Msa1167110:intron 35.0%
AAGTGCTTCCTTGAAAAGAT+CGG + chr7_4:59305618-59305637 None:intergenic 35.0%
! AAATGGACTCATGGGTTTAA+GGG + chr7_4:59305888-59305907 None:intergenic 35.0%
! AAAATGGACTCATGGGTTTA+AGG + chr7_4:59305889-59305908 None:intergenic 35.0%
TAGCACTCCAACAACATAAA+AGG + chr7_4:59306061-59306080 None:intergenic 35.0%
!! TTTTATGTTGTTGGAGTGCT+AGG - chr7_4:59306060-59306079 Msa1167110:intron 35.0%
GCTCCTTAATAGAGTTTCTT+TGG + chr7_4:59306328-59306347 None:intergenic 35.0%
TTGGAAAGAAAAAGCGAGAA+AGG - chr7_4:59306387-59306406 Msa1167110:intron 35.0%
TGGAAAGAAAAAGCGAGAAA+GGG - chr7_4:59306388-59306407 Msa1167110:intron 35.0%
TTCAACTCCATCATCAAGAT+GGG + chr7_4:59306643-59306662 None:intergenic 35.0%
AGAAGTCACATTTGAACCTA+AGG - chr7_4:59306701-59306720 Msa1167110:intron 35.0%
TAAGCGAAAGTTAGGATCAA+TGG - chr7_4:59306893-59306912 Msa1167110:intron 35.0%
AAGCGAAAGTTAGGATCAAT+GGG - chr7_4:59306894-59306913 Msa1167110:CDS 35.0%
AAAGTTAGGATCAATGGGAA+TGG - chr7_4:59306899-59306918 Msa1167110:CDS 35.0%
!!! TTTTGGGATGCTTATGTATC+AGG - chr7_4:59307146-59307165 Msa1167110:intron 35.0%
ATCCACACTACTATCAACTA+GGG + chr7_4:59307570-59307589 None:intergenic 35.0%
AATCCACACTACTATCAACT+AGG + chr7_4:59307571-59307590 None:intergenic 35.0%
!! TAGTTGATAGTAGTGTGGAT+TGG - chr7_4:59307570-59307589 Msa1167110:intron 35.0%
!! GTTCTTTGGTTCTCTACTAA+TGG - chr7_4:59307679-59307698 Msa1167110:intron 35.0%
TGTGTACTTCTTTAACAGAG+TGG - chr7_4:59307931-59307950 Msa1167110:intron 35.0%
!!! AGTTTTTTATCCTACACTGC+AGG - chr7_4:59308083-59308102 Msa1167110:CDS 35.0%
!! ATAGCTCTGCAGTATTTTCT+TGG - chr7_4:59308117-59308136 Msa1167110:CDS 35.0%
AATACAGTGATGTTTCAGCT+TGG + chr7_4:59308146-59308165 None:intergenic 35.0%
AACATCACTGTATTCTCTTG+TGG - chr7_4:59308152-59308171 Msa1167110:CDS 35.0%
! GCATATCGTGATACCTATTT+TGG - chr7_4:59308196-59308215 Msa1167110:CDS 35.0%
!!! CTTTATTTTCAAGACCATGC+AGG - chr7_4:59308312-59308331 Msa1167110:CDS 35.0%
ATGTAAAAAGCTACTTGCCA+TGG - chr7_4:59308412-59308431 Msa1167110:CDS 35.0%
!! GGTTGACAGGATTTTTGAAA+AGG + chr7_4:59308492-59308511 None:intergenic 35.0%
! ATTCTGGTCCTTTGAAGATA+TGG + chr7_4:59308513-59308532 None:intergenic 35.0%
CCATAGTAGTATCTGAATTC+TGG + chr7_4:59308529-59308548 None:intergenic 35.0%
CCAGAATTCAGATACTACTA+TGG - chr7_4:59308526-59308545 Msa1167110:intron 35.0%
GATCACACTGACGATTATTT+AGG - chr7_4:59308582-59308601 Msa1167110:intron 35.0%
TAGAAGTTCCACAGCAATTA+TGG + chr7_4:59308619-59308638 None:intergenic 35.0%
ATAATTGCTGTGGAACTTCT+AGG - chr7_4:59308618-59308637 Msa1167110:intron 35.0%
ATCAACGTTCTCCATTTCAT+TGG - chr7_4:59308641-59308660 Msa1167110:intron 35.0%
! CATGAGTATTGCCAATGAAA+TGG + chr7_4:59308655-59308674 None:intergenic 35.0%
ACAACTTCAACTTGAAGTGT+CGG + chr7_4:59308683-59308702 None:intergenic 35.0%
GTAATCACATGTACTAGTGT+CGG + chr7_4:59308733-59308752 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - chr7_4:59308877-59308896 Msa1167110:intron 35.0%
! AATAGCTTATAGGCACTGTT+TGG - chr7_4:59309007-59309026 Msa1167110:intron 35.0%
!!! GGGTTTTAGTTAAAGTGGTA+AGG + chr7_4:59309232-59309251 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG + chr7_4:59309841-59309860 None:intergenic 35.0%
TAGCTTATTTCAGGAGCTTA+TGG + chr7_4:59309863-59309882 None:intergenic 35.0%
ACGAGCTTATAGCTTATTTC+AGG + chr7_4:59309111-59309130 None:intergenic 35.0%
AATCACTACACCAGTGATAA+AGG + chr7_4:59310059-59310078 None:intergenic 35.0%
TCAGGAAATGAATTAGCACA+TGG - chr7_4:59310137-59310156 Msa1167110:CDS 35.0%
TTAAAATGGCGCATATCACA+TGG - chr7_4:59310195-59310214 Msa1167110:intron 35.0%
!! AAGATTGAGTTTTTGGATGC+TGG - chr7_4:59310223-59310242 Msa1167110:intron 35.0%
!! AGATTGAGTTTTTGGATGCT+GGG - chr7_4:59310224-59310243 Msa1167110:intron 35.0%
AGGACAAAACCATAAGAGAT+AGG - chr7_4:59310285-59310304 Msa1167110:CDS 35.0%
!!! GGTATTGAAAGTTGCTTTTG+TGG - chr7_4:59310575-59310594 Msa1167110:five_prime_UTR 35.0%
ATGTATTCTGATTCTGATGG+AGG - chr7_4:59310610-59310629 Msa1167110:five_prime_UTR 35.0%
! ATTGGGCCTTTTAACGGTAA+AGG + chr7_4:59304419-59304438 None:intergenic 40.0%
CGAAAAAATACTAACCGAGG+GGG - chr7_4:59304449-59304468 Msa1167110:three_prime_UTR 40.0%
GGATGGTAGCAAAAAGATAG+TGG + chr7_4:59304478-59304497 None:intergenic 40.0%
!!! TTTGCACTGTTTTTGGTGCT+GGG + chr7_4:59304500-59304519 None:intergenic 40.0%
!!! ATTTGCACTGTTTTTGGTGC+TGG + chr7_4:59304501-59304520 None:intergenic 40.0%
TTTAAAGACCTTCGATCCCT+CGG - chr7_4:59304774-59304793 Msa1167110:three_prime_UTR 40.0%
AAACTGAAAACGCATACCGA+GGG + chr7_4:59304793-59304812 None:intergenic 40.0%
!! GATTAGGGTTTTGGTATCGT+CGG - chr7_4:59304842-59304861 Msa1167110:three_prime_UTR 40.0%
TTTGATAGGAAAGGAGCTTG+AGG - chr7_4:59304891-59304910 Msa1167110:three_prime_UTR 40.0%
AGCTGGAGTTCTTAGTGAAA+CGG - chr7_4:59304915-59304934 Msa1167110:intron 40.0%
TTTCCAAGCATAGGCAACAA+CGG + chr7_4:59304998-59305017 None:intergenic 40.0%
AACAAACCTAGTCCTGTCAA+CGG + chr7_4:59305052-59305071 None:intergenic 40.0%
GATATATGCGCATAGTTGAG+AGG - chr7_4:59305309-59305328 Msa1167110:intron 40.0%
!! CTACTGCTTGCTATGAATTC+CGG + chr7_4:59305367-59305386 None:intergenic 40.0%
GATTGTTAATGCAAGGGTCA+AGG - chr7_4:59305496-59305515 Msa1167110:intron 40.0%
!! AATGTGTGCCGATCTTTTCA+AGG - chr7_4:59305607-59305626 Msa1167110:intron 40.0%
!!! CTTTTCAAGGAAGCACTTAC+CGG - chr7_4:59305620-59305639 Msa1167110:intron 40.0%
ACGGAGTTGGAATTTGGTTA+TGG + chr7_4:59305981-59306000 None:intergenic 40.0%
! ACTCTATTAAGGAGCACGAA+TGG - chr7_4:59306333-59306352 Msa1167110:intron 40.0%
CCATGCATAGGCTTATTTGT+TGG + chr7_4:59306359-59306378 None:intergenic 40.0%
CCAACAAATAAGCCTATGCA+TGG - chr7_4:59306356-59306375 Msa1167110:intron 40.0%
CCAAAACTTCAACCATGCAT+AGG + chr7_4:59306371-59306390 None:intergenic 40.0%
! CCTATGCATGGTTGAAGTTT+TGG - chr7_4:59306368-59306387 Msa1167110:intron 40.0%
GTGAGCAGCTAATGTAACAT+GGG + chr7_4:59306554-59306573 None:intergenic 40.0%
AGTGAGCAGCTAATGTAACA+TGG + chr7_4:59306555-59306574 None:intergenic 40.0%
GTTACATTAGCTGCTCACTT+AGG - chr7_4:59306556-59306575 Msa1167110:CDS 40.0%
! TTTTTCCCCCATCTTGATGA+TGG - chr7_4:59306633-59306652 Msa1167110:CDS 40.0%
TCAACTCCATCATCAAGATG+GGG + chr7_4:59306642-59306661 None:intergenic 40.0%
CTTCAACTCCATCATCAAGA+TGG + chr7_4:59306644-59306663 None:intergenic 40.0%
!! TCAGATTCAAAGAAGCGTTG+TGG - chr7_4:59306672-59306691 Msa1167110:intron 40.0%
!! CAGATTCAAAGAAGCGTTGT+GGG - chr7_4:59306673-59306692 Msa1167110:intron 40.0%
! ATTTGGCACTTCCTTTTCCA+AGG + chr7_4:59306769-59306788 None:intergenic 40.0%
! AGAACTCTCATTTGGTGAAG+AGG + chr7_4:59306847-59306866 None:intergenic 40.0%
TTCACCAAATGAGAGTTCTG+AGG - chr7_4:59306848-59306867 Msa1167110:intron 40.0%
TGTTCCTCAGAACTCTCATT+TGG + chr7_4:59306855-59306874 None:intergenic 40.0%
TCTGAGGAACATAACTATCG+TGG - chr7_4:59306864-59306883 Msa1167110:intron 40.0%
! GGTTCTAGTAAGCGAAAGTT+AGG - chr7_4:59306885-59306904 Msa1167110:intron 40.0%
AGAAAAGAAAGCGACAGCAT+CGG + chr7_4:59307015-59307034 None:intergenic 40.0%
!! TAATGACTCGGCGTTAGTTT+TGG - chr7_4:59307129-59307148 Msa1167110:intron 40.0%
!!! AATGACTCGGCGTTAGTTTT+GGG - chr7_4:59307130-59307149 Msa1167110:intron 40.0%
CATTGAGAGAGAAAGCTACA+GGG + chr7_4:59307371-59307390 None:intergenic 40.0%
TCATTGAGAGAGAAAGCTAC+AGG + chr7_4:59307372-59307391 None:intergenic 40.0%
TTCTCTCTCAATGACCATCT+TGG - chr7_4:59307378-59307397 Msa1167110:intron 40.0%
!!! TTATTTTGAATCATGGCGCC+AGG - chr7_4:59307496-59307515 Msa1167110:intron 40.0%
ATGGCAGCTGAATTAGAGAT+GGG + chr7_4:59307622-59307641 None:intergenic 40.0%
TATGGCAGCTGAATTAGAGA+TGG + chr7_4:59307623-59307642 None:intergenic 40.0%
TCTACTAATGGCCGTTTGAA+GGG - chr7_4:59307691-59307710 Msa1167110:intron 40.0%
AGATGTCAACTCCCTTCAAA+CGG + chr7_4:59307705-59307724 None:intergenic 40.0%
!!! TTGCTTTGTCCTTGTTTTGC+AGG - chr7_4:59307781-59307800 Msa1167110:intron 40.0%
CACTTCAAACAGTCACTCAA+AGG + chr7_4:59308050-59308069 None:intergenic 40.0%
CATCATTCTTGACATACTCG+AGG - chr7_4:59308227-59308246 Msa1167110:CDS 40.0%
AGGAAAACTTCCAATAAGGC+CGG + chr7_4:59308472-59308491 None:intergenic 40.0%
! CCTTTGAAGATATGGTTGAC+AGG + chr7_4:59308505-59308524 None:intergenic 40.0%
CCTGTCAACCATATCTTCAA+AGG - chr7_4:59308502-59308521 Msa1167110:intron 40.0%
TCAGTGTGATCATACTTCCT+CGG + chr7_4:59308573-59308592 None:intergenic 40.0%
! CTTATAGGCACTGTTTGGTA+AGG - chr7_4:59309012-59309031 Msa1167110:intron 40.0%
GGTAACACAAAAGCTCTGTT+TGG + chr7_4:59309899-59309918 None:intergenic 40.0%
ACTAACATGTAGGCTCTGTT+TGG + chr7_4:59309994-59310013 None:intergenic 40.0%
!!! TCTCTTATGGTTTTGTCCTG+TGG + chr7_4:59310284-59310303 None:intergenic 40.0%
! TTTTGACCTTCTATGCATGC+TGG - chr7_4:59310312-59310331 Msa1167110:CDS 40.0%
CAGAGAAGATAGAGATGTGT+AGG + chr7_4:59310433-59310452 None:intergenic 40.0%
CTCAGTCCTAGATTCTCAAT+TGG + chr7_4:59310509-59310528 None:intergenic 40.0%
! CAATTGAGAATCTAGGACTG+AGG - chr7_4:59310507-59310526 Msa1167110:CDS 40.0%
GATGGGCCTTTACCGTTAAA+AGG - chr7_4:59304410-59304429 Msa1167110:three_prime_UTR 45.0%
!! ACTCGGATTGGGCCTTTTAA+CGG + chr7_4:59304425-59304444 None:intergenic 45.0%
!!! TTGCACTGTTTTTGGTGCTG+GGG + chr7_4:59304499-59304518 None:intergenic 45.0%
ATAGCTAGAGCAACCTGCTT+CGG + chr7_4:59304600-59304619 None:intergenic 45.0%
GCTCTAGCTATGGACAAACT+CGG - chr7_4:59304609-59304628 Msa1167110:three_prime_UTR 45.0%
AGAGGCTTATTGCCTTGATG+AGG + chr7_4:59304714-59304733 None:intergenic 45.0%
GAAACTGAAAACGCATACCG+AGG + chr7_4:59304794-59304813 None:intergenic 45.0%
! TGACTTCGCGATTAGGGTTT+TGG - chr7_4:59304833-59304852 Msa1167110:three_prime_UTR 45.0%
GAGTTCTTAGTGAAACGGCA+CGG - chr7_4:59304920-59304939 Msa1167110:intron 45.0%
! ACGGTCACGGAAGGATTTTT+GGG - chr7_4:59304939-59304958 Msa1167110:intron 45.0%
! GAGTTGTCGTTTCCAAGCAT+AGG + chr7_4:59305007-59305026 None:intergenic 45.0%
GACGACGAACCAAAATAGAG+TGG + chr7_4:59305076-59305095 None:intergenic 45.0%
TTGGGTACGGAGTTGGAATT+TGG + chr7_4:59305987-59306006 None:intergenic 45.0%
!! CTTTTGTTTGGGTACGGAGT+TGG + chr7_4:59305994-59306013 None:intergenic 45.0%
CAACTCCATCATCAAGATGG+GGG + chr7_4:59306641-59306660 None:intergenic 45.0%
TGTTCTGCAGTCCTTGGAAA+AGG - chr7_4:59306755-59306774 Msa1167110:CDS 45.0%
!! CAACTTTTGAAAGGCTGGAC+TGG - chr7_4:59306799-59306818 Msa1167110:intron 45.0%
! ATTTGGTGAAGAGGTGAGTG+TGG + chr7_4:59306838-59306857 None:intergenic 45.0%
TCTATGACTGCAACCTTCTC+TGG + chr7_4:59306930-59306949 None:intergenic 45.0%
GTTATATCCTTGCATCCTGC+TGG - chr7_4:59306978-59306997 Msa1167110:intron 45.0%
GAAAAGAAAGCGACAGCATC+GGG + chr7_4:59307014-59307033 None:intergenic 45.0%
GGGGTGTGAACTATTTGTTC+TGG - chr7_4:59307091-59307110 Msa1167110:CDS 45.0%
GGTTGGGAAACAGTTAGACT+TGG + chr7_4:59307322-59307341 None:intergenic 45.0%
AGTTATGCAGAGTGGAGGTT+GGG + chr7_4:59307338-59307357 None:intergenic 45.0%
GTTGCAACTTTCTGCCAAGA+TGG + chr7_4:59307395-59307414 None:intergenic 45.0%
TCTCTTCTTTCTCCTCCCAT+TGG - chr7_4:59307454-59307473 Msa1167110:intron 45.0%
CTCTTCTTTCTCCTCCCATT+GGG - chr7_4:59307455-59307474 Msa1167110:intron 45.0%
CAACTAGGGCTTCAAAAGAG+AGG + chr7_4:59307556-59307575 None:intergenic 45.0%
!! AGCCCTAGTTGATAGTAGTG+TGG - chr7_4:59307565-59307584 Msa1167110:intron 45.0%
CTCTACTAATGGCCGTTTGA+AGG - chr7_4:59307690-59307709 Msa1167110:intron 45.0%
TTTGCAGAGACTAGACAGAG+TGG - chr7_4:59307729-59307748 Msa1167110:intron 45.0%
TGGAAGCTATGTGCATGCAA+GGG - chr7_4:59307951-59307970 Msa1167110:intron 45.0%
ACAGTCACTCAAAGGATCAC+AGG + chr7_4:59308042-59308061 None:intergenic 45.0%
GTTGCATATTCCTGCAGTGT+AGG + chr7_4:59308096-59308115 None:intergenic 45.0%
! TTTCCTTTTCCCTGTAGCAC+TGG - chr7_4:59308273-59308292 Msa1167110:CDS 45.0%
AATCCAGTGCTACAGGGAAA+AGG + chr7_4:59308279-59308298 None:intergenic 45.0%
AACTGCAAATCGAACCTGCA+TGG + chr7_4:59308329-59308348 None:intergenic 45.0%
AAAACTTCCAATAAGGCCGG+TGG + chr7_4:59308469-59308488 None:intergenic 45.0%
GTCAAGTGCCATAATTGCTG+TGG - chr7_4:59308608-59308627 Msa1167110:intron 45.0%
ACAGACACATGTCAGCAACT+TGG + chr7_4:59308708-59308727 None:intergenic 45.0%
AAGACCTGGCACTAACATGT+AGG + chr7_4:59310004-59310023 None:intergenic 45.0%
ATGAAGCAGCGAAAAAGACC+TGG + chr7_4:59310018-59310037 None:intergenic 45.0%
ACCAGTGATAAAGGAGGAAG+GGG + chr7_4:59310050-59310069 None:intergenic 45.0%
CACCAGTGATAAAGGAGGAA+GGG + chr7_4:59310051-59310070 None:intergenic 45.0%
ACACCAGTGATAAAGGAGGA+AGG + chr7_4:59310052-59310071 None:intergenic 45.0%
CACTACACCAGTGATAAAGG+AGG + chr7_4:59310056-59310075 None:intergenic 45.0%
GCAGGCAATGATCAATGTCA+GGG + chr7_4:59310262-59310281 None:intergenic 45.0%
!!! TTATGGTTTTGTCCTGTGGC+AGG + chr7_4:59310280-59310299 None:intergenic 45.0%
TTCCATCCAGCATGCATAGA+AGG + chr7_4:59310321-59310340 None:intergenic 45.0%
!! AAAGATAGTGGGATCCCCCT+CGG + chr7_4:59304466-59304485 None:intergenic 50.0%
!!! ACTGTTTTTGGTGCTGGGGA+TGG + chr7_4:59304495-59304514 None:intergenic 50.0%
GAAGCAGGTTGCTCTAGCTA+TGG - chr7_4:59304599-59304618 Msa1167110:three_prime_UTR 50.0%
GATGTCGGCGATGATACGTT+CGG + chr7_4:59304640-59304659 None:intergenic 50.0%
ATCATCGCCGACATCCGAAT+TGG - chr7_4:59304645-59304664 Msa1167110:three_prime_UTR 50.0%
ATCAGCGCCAATTCGGATGT+CGG + chr7_4:59304655-59304674 None:intergenic 50.0%
CAGCGATGAATAGAGCTTCG+AGG + chr7_4:59304683-59304702 None:intergenic 50.0%
GAAGCTCTATTCATCGCTGC+TGG - chr7_4:59304684-59304703 Msa1167110:three_prime_UTR 50.0%
TTAGTGAAACGGCACGGTCA+CGG - chr7_4:59304926-59304945 Msa1167110:intron 50.0%
! CACGGTCACGGAAGGATTTT+TGG - chr7_4:59304938-59304957 Msa1167110:intron 50.0%
! CGGTCACGGAAGGATTTTTG+GGG - chr7_4:59304940-59304959 Msa1167110:intron 50.0%
TGTCGTGTTAGGAGTCTGCT+AGG + chr7_4:59305105-59305124 None:intergenic 50.0%
!! CTGCTTGCTATGAATTCCGG+AGG + chr7_4:59305364-59305383 None:intergenic 50.0%
ACACAACTCAGGCACGTATG+AGG + chr7_4:59305436-59305455 None:intergenic 50.0%
TCGGCACACATTCATGTGAC+TGG + chr7_4:59305599-59305618 None:intergenic 50.0%
ACCAGATGTTCTGCAGTCCT+TGG - chr7_4:59306749-59306768 Msa1167110:CDS 50.0%
TCCAAGGACTGCAGAACATC+TGG + chr7_4:59306753-59306772 None:intergenic 50.0%
AATGGAACCAGCAGGATGCA+AGG + chr7_4:59306988-59307007 None:intergenic 50.0%
! CGCTTTCTTTTCTCCAGACG+AGG - chr7_4:59307022-59307041 Msa1167110:intron 50.0%
CAGTTATGCAGAGTGGAGGT+TGG + chr7_4:59307339-59307358 None:intergenic 50.0%
ATGGCAGTTATGCAGAGTGG+AGG + chr7_4:59307343-59307362 None:intergenic 50.0%
TGCATGGCAGTTATGCAGAG+TGG + chr7_4:59307346-59307365 None:intergenic 50.0%
TTCTTTCTCCTCCCATTGGG+AGG - chr7_4:59307458-59307477 Msa1167110:intron 50.0%
AGTCTATGGCTCCTCCCAAT+GGG + chr7_4:59307472-59307491 None:intergenic 50.0%
AAGTCTATGGCTCCTCCCAA+TGG + chr7_4:59307473-59307492 None:intergenic 50.0%
TAACCACGATGTTACAGGCC+TGG + chr7_4:59307517-59307536 None:intergenic 50.0%
GTGGAAGCTATGTGCATGCA+AGG - chr7_4:59307950-59307969 Msa1167110:intron 50.0%
GGAAGCTATGTGCATGCAAG+GGG - chr7_4:59307952-59307971 Msa1167110:intron 50.0%
GAAGCTATGTGCATGCAAGG+GGG - chr7_4:59307953-59307972 Msa1167110:intron 50.0%
AAGCTATGTGCATGCAAGGG+GGG - chr7_4:59307954-59307973 Msa1167110:intron 50.0%
GCTGCAAATCCAGTGCTACA+GGG + chr7_4:59308285-59308304 None:intergenic 50.0%
AGCTGCAAATCCAGTGCTAC+AGG + chr7_4:59308286-59308305 None:intergenic 50.0%
TATTGTTAGCCCCAGTCCAC+CGG - chr7_4:59308450-59308469 Msa1167110:intron 50.0%
! TCATATTGGCTGCATCTCCG+AGG - chr7_4:59308553-59308572 Msa1167110:intron 50.0%
CTGATGTCTACGGCTCTGTT+TGG - chr7_4:59308784-59308803 Msa1167110:intron 50.0%
! CAGGAGCTTATGGCTCTGTT+TGG + chr7_4:59309853-59309872 None:intergenic 50.0%
AGAGCCTACATGTTAGTGCC+AGG - chr7_4:59309997-59310016 Msa1167110:intron 50.0%
CCAGTGATAAAGGAGGAAGG+GGG + chr7_4:59310049-59310068 None:intergenic 50.0%
GGCAGGCAATGATCAATGTC+AGG + chr7_4:59310263-59310282 None:intergenic 50.0%
CATTGATCATTGCCTGCCAC+AGG - chr7_4:59310265-59310284 Msa1167110:intron 50.0%
GACCTTCTATGCATGCTGGA+TGG - chr7_4:59310316-59310335 Msa1167110:CDS 50.0%
AGGGGGCCAATTGAGAATCT+AGG - chr7_4:59310500-59310519 Msa1167110:CDS 50.0%
GGTGGATGCAAATGTTGCTG+TGG - chr7_4:59310554-59310573 Msa1167110:five_prime_UTR 50.0%
GCAACAAACGCAGCAAGCCA+CGG - chr7_4:59304521-59304540 Msa1167110:three_prime_UTR 55.0%
GGAGACGATCAGCGCCAATT+CGG + chr7_4:59304662-59304681 None:intergenic 55.0%
GCTGCTGGTCAACCTCATCA+AGG - chr7_4:59304699-59304718 Msa1167110:three_prime_UTR 55.0%
AACGCATACCGAGGGATCGA+AGG + chr7_4:59304785-59304804 None:intergenic 55.0%
GGAAAGGAGCTTGAGGAAGC+TGG - chr7_4:59304898-59304917 Msa1167110:three_prime_UTR 55.0%
TTGGGGATTGCATATGCCGC+TGG - chr7_4:59304957-59304976 Msa1167110:intron 55.0%
!! ATGCCGCTGGTTTGTCCAGA+TGG - chr7_4:59304970-59304989 Msa1167110:intron 55.0%
GCACCATCTGGACAAACCAG+CGG + chr7_4:59304976-59304995 None:intergenic 55.0%
TAGGCAACAACGGCACCATC+TGG + chr7_4:59304988-59305007 None:intergenic 55.0%
! GTGCCGTTGTTGCCTATGCT+TGG - chr7_4:59304992-59305011 Msa1167110:intron 55.0%
GCTTGGAAACGACAACTCGC+CGG - chr7_4:59305009-59305028 Msa1167110:intron 55.0%
CTTCTGCCGTTGACAGGACT+AGG - chr7_4:59305043-59305062 Msa1167110:intron 55.0%
GGGAATGGTTGCTCCAGAGA+AGG - chr7_4:59306914-59306933 Msa1167110:CDS 55.0%
TCGGGATCAATGGAACCAGC+AGG + chr7_4:59306996-59307015 None:intergenic 55.0%
! AGCGACAGCATCGGGATCAA+TGG + chr7_4:59307006-59307025 None:intergenic 55.0%
AGAAAGCTACAGGGCGTGCA+TGG + chr7_4:59307362-59307381 None:intergenic 55.0%
! TCCAATAAGGCCGGTGGACT+GGG + chr7_4:59308463-59308482 None:intergenic 55.0%
TTCCAATAAGGCCGGTGGAC+TGG + chr7_4:59308464-59308483 None:intergenic 55.0%
CCCCCTTCCTCCTTTATCAC+TGG - chr7_4:59310046-59310065 Msa1167110:CDS 55.0%
ACAAACGCAGCAAGCCACGG+CGG - chr7_4:59304524-59304543 Msa1167110:three_prime_UTR 60.0%
GGTTGAGAAAGTTGCCGCCG+TGG + chr7_4:59304541-59304560 None:intergenic 60.0%
GCTAGAGCAACCTGCTTCGG+AGG + chr7_4:59304597-59304616 None:intergenic 60.0%
TGAAACGGCACGGTCACGGA+AGG - chr7_4:59304930-59304949 Msa1167110:intron 60.0%
GGCAGAAGCTCCAGCTTGAC+CGG + chr7_4:59305031-59305050 None:intergenic 60.0%
CTGGAGCTTCTGCCGTTGAC+AGG - chr7_4:59305037-59305056 Msa1167110:intron 60.0%
TGAGCTCGCATCACCCCAAG+TGG + chr7_4:59305550-59305569 None:intergenic 60.0%
CTATGGCTCCTCCCAATGGG+AGG + chr7_4:59307469-59307488 None:intergenic 60.0%
!! CCAATAAGGCCGGTGGACTG+GGG + chr7_4:59308462-59308481 None:intergenic 60.0%
TGGAGGAGGGAGGAGGAGTG+GGG + chr7_4:59304563-59304582 None:intergenic 65.0%
GTGGAGGAGGGAGGAGGAGT+GGG + chr7_4:59304564-59304583 None:intergenic 65.0%
!! CTGCTTCGGAGGTGCTTCCG+CGG + chr7_4:59304586-59304605 None:intergenic 65.0%
CGACAACTCGCCGGTCAAGC+TGG - chr7_4:59305018-59305037 Msa1167110:intron 65.0%
GCGCCAGGCCTGTAACATCG+TGG - chr7_4:59307511-59307530 Msa1167110:intron 65.0%
! CCCCAGTCCACCGGCCTTAT+TGG - chr7_4:59308459-59308478 Msa1167110:intron 65.0%
GGAGGAGGGAGGAGGAGTGG+GGG + chr7_4:59304562-59304581 None:intergenic 70.0%
GGTGGAGGAGGGAGGAGGAG+TGG + chr7_4:59304565-59304584 None:intergenic 70.0%
TCCTCCTCCCTCCTCCACCG+CGG - chr7_4:59304566-59304585 Msa1167110:three_prime_UTR 70.0%
GGTGCTTCCGCGGTGGAGGA+GGG + chr7_4:59304576-59304595 None:intergenic 70.0%
AGGTGCTTCCGCGGTGGAGG+AGG + chr7_4:59304577-59304596 None:intergenic 70.0%
!! CTTCGGAGGTGCTTCCGCGG+TGG + chr7_4:59304583-59304602 None:intergenic 70.0%
!! CGCGGAAGCACCTCCGAAGC+AGG - chr7_4:59304584-59304603 Msa1167110:three_prime_UTR 70.0%
TCCGCGGTGGAGGAGGGAGG+AGG + chr7_4:59304570-59304589 None:intergenic 75.0%
GCTTCCGCGGTGGAGGAGGG+AGG + chr7_4:59304573-59304592 None:intergenic 75.0%
!! CGGAGGTGCTTCCGCGGTGG+AGG + chr7_4:59304580-59304599 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59304397 59310670 59304397 ID=Msa1167110;Name=Msa1167110
chr7_4 mRNA 59304397 59310670 59304397 ID=Msa1167110-mRNA-1;Parent=Msa1167110;Name=Msa1167110-mRNA-1;_AED=0.10;_eAED=0.10;_QI=122|0.85|0.75|1|1|0.87|8|550|398
chr7_4 exon 59304397 59304926 59304397 ID=Msa1167110-mRNA-1:exon:18460;Parent=Msa1167110-mRNA-1
chr7_4 exon 59306464 59306658 59306464 ID=Msa1167110-mRNA-1:exon:18459;Parent=Msa1167110-mRNA-1
chr7_4 exon 59306734 59306777 59306734 ID=Msa1167110-mRNA-1:exon:18458;Parent=Msa1167110-mRNA-1
chr7_4 exon 59306894 59306962 59306894 ID=Msa1167110-mRNA-1:exon:18457;Parent=Msa1167110-mRNA-1
chr7_4 exon 59307059 59307118 59307059 ID=Msa1167110-mRNA-1:exon:18456;Parent=Msa1167110-mRNA-1
chr7_4 exon 59308024 59308443 59308024 ID=Msa1167110-mRNA-1:exon:18455;Parent=Msa1167110-mRNA-1
chr7_4 exon 59310017 59310168 59310017 ID=Msa1167110-mRNA-1:exon:18454;Parent=Msa1167110-mRNA-1
chr7_4 exon 59310272 59310670 59310272 ID=Msa1167110-mRNA-1:exon:18453;Parent=Msa1167110-mRNA-1
chr7_4 five_prime_UTR 59310549 59310670 59310549 ID=Msa1167110-mRNA-1:five_prime_utr;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59310272 59310548 59310272 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59310017 59310168 59310017 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59308024 59308443 59308024 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59307059 59307118 59307059 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59306894 59306962 59306894 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59306734 59306777 59306734 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 CDS 59306484 59306658 59306484 ID=Msa1167110-mRNA-1:cds;Parent=Msa1167110-mRNA-1
chr7_4 three_prime_UTR 59306464 59306483 59306464 ID=Msa1167110-mRNA-1:three_prime_utr;Parent=Msa1167110-mRNA-1
chr7_4 three_prime_UTR 59304397 59304926 59304397 ID=Msa1167110-mRNA-1:three_prime_utr;Parent=Msa1167110-mRNA-1
Gene Sequence

>Msa1167110

ATGCAACAAACGCAGCAAGCCACGGCGGCAACTTTCTCAACCCCCACTCCTCCTCCCTCCTCCACCGCGGAAGCACCTCCGAAGCAGGTTGCTCTAGCTATGGACAAACTCGGTCAAGCCGAACGTATCATCGCCGACATCCGAATTGGCGCTGATCGTCTCCTCGAAGCTCTATTCATCGCTGCTGGTCAACCTCATCAAGGCAATAAGCCTCTTCAAGTTTTCGTCAAAGAGAATGCTTCTATGCAACAGCATTTTAAAGACCTTCGATCCCTCGGAAAGGAGCTTGAGGAAGCTGGAGTTCTTAGTGAAACGGCACGGTCACGGAAGGATTTTTGGGGATTGCATATGCCGCTGGTTTGTCCAGATGGTGCCGTTGTTGCCTATGCTTGGAAACGACAACTCGCCGGTCAAGCTGGAGCTTCTGCCAAAAGACGTTTTTTCCCCCATCTTGATGATGGAGTTGAAGCTAATGAATCAGATTCAAAGAAGCGTTGTGGGTCTGAAGAAGTCACATTTGAACCTAAGGAAGTAATGAGTTTTCTAAGGACGCTACCAGATGTTCTGCAGTCCTTGGAAAAGGAAGTGCCAAATGTGAAAATTTCAACTTTTGAAAGGCTGGACTGGTTAAAATGTGCTTCCACACTCACCTCTTCACCAAATGAGAGTTCTGAGGAACATAACTATCGTGGTTCTAGTAAGCGAAAGTTAGGATCAATGGGAATGGTTGCTCCAGAGAAGGTTGCAGTCATAGAATTGCTGTGCCCTTCTATCTTCAGAGTTGTTATATCCTTGCATCCTGCTGGTTCCATTGATCCCGATGCTGTCGCTTTCTTTTCTCCAGACGAGAGTGGAAGCTATGTGCATGCAAGGGGGGTTTCAGTTCATCATGTGTATAGACATATTACGGAATATGCAACGATAGCTCTGCAGTATTTTCTTGGTAACCAAGCTGAAACATCACTGTATTCTCTTGTGCACTGGATTTGCAGCTACCAGACTTTATTTTCAAGACCATGCAGCAAATGTAAAAAGCTACTTGCCATGGATAAGCAATCAAATTTATTGTTAGCCCCAGTCCACCGGCCTTATTGGAAGTTTTCCTTTTCAAAAATCCTGTCAACCATATCTTCAAAGGACCAGAATTCAGATACTACTATGGCTTATCATATTGGCTGCATCTCCGAGGAAGTATGA
Protein sequence

>Msa1167110

MQQTQQATAATFSTPTPPPSSTAEAPPKQVALAMDKLGQAERIIADIRIGADRLLEALFIAAGQPHQGNKPLQVFVKENASMQQHFKDLRSLGKELEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSKCKKLLAMDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV*