AlfalfaGEDB | Msa1135870

M. sativa cultivar zhongmu-4 / Msa1135870

KEGG: K09422
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135870	XP_003621186.2	98.462	325	5	0	1	325	1	325	0.0	664

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135870	sp\|P81392\|MYB06_ANTMA	56.386	321	113	8	1	309	1	306	1.73e-111	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135870	Q2HVT2	98.462	325	5	0	1	325	1	325	0.0	664

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TFs/TRs:

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Gene ID	Type	Classification
Msa1135870	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa1135870	0.863485	2.407479e-64	-8.615850e-47
Msa0004350	Msa1135870	0.856807	2.505697e-62	-8.615850e-47
Msa0006700	Msa1135870	0.805475	1.311061e-49	-8.615850e-47
Msa0007450	Msa1135870	0.806338	8.635520e-50	-8.615850e-47
Msa0008850	Msa1135870	0.814432	1.545394e-51	-8.615850e-47
Msa0017120	Msa1135870	0.845822	3.194602e-59	-8.615850e-47
Msa0018220	Msa1135870	0.811912	5.520789e-51	-8.615850e-47
Msa0020630	Msa1135870	0.812471	4.168916e-51	-8.615850e-47
Msa0024680	Msa1135870	0.807213	5.641648e-50	-8.615850e-47
Msa0027540	Msa1135870	0.810623	1.051539e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135870	MtrunA17_Chr7g0217221	78.221	326	15	3	1	325	1	271	0.0	504
Msa1135870	MtrunA17_Chr6g0453211	66.564	326	80	8	1	314	1	309	3.56e-136	389
Msa1135870	MtrunA17_Chr3g0092401	53.823	327	110	9	1	315	2	299	1.20e-104	308
Msa1135870	MtrunA17_Chr4g0060721	51.471	340	121	11	1	315	2	322	2.78e-102	303
Msa1135870	MtrunA17_Chr7g0254411	43.909	353	122	8	1	307	1	323	9.34e-79	243
Msa1135870	MtrunA17_Chr6g0453471	50.732	205	87	5	1	191	1	205	8.59e-63	203
Msa1135870	MtrunA17_Chr4g0039971	71.552	116	33	0	1	116	2	117	1.26e-59	194
Msa1135870	MtrunA17_Chr7g0217741	70.339	118	35	0	1	118	1	118	1.71e-59	193
Msa1135870	MtrunA17_Chr3g0115821	69.828	116	35	0	1	116	1	116	1.96e-59	194
Msa1135870	MtrunA17_Chr2g0323411	67.227	119	39	0	1	119	1	119	1.85e-58	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1135870	AT3G28910.1	55.183	328	106	8	1	308	1	307	6.17e-106	313
Msa1135870	AT5G62470.2	52.907	344	120	6	1	309	1	337	2.13e-104	310
Msa1135870	AT3G47600.1	53.453	333	114	8	1	309	1	316	8.64e-103	305
Msa1135870	AT5G62470.1	52.907	344	119	7	1	309	1	336	9.48e-103	305
Msa1135870	AT1G74650.1	51.497	334	109	9	1	307	1	308	3.02e-91	275
Msa1135870	AT1G08810.1	48.428	318	98	7	1	309	1	261	3.98e-85	258
Msa1135870	AT3G47600.2	47.751	289	110	8	45	309	39	310	2.94e-66	211
Msa1135870	AT3G01140.2	50.237	211	75	5	1	183	1	209	2.84e-62	202
Msa1135870	AT5G15310.4	72.881	118	32	0	1	118	1	118	2.28e-61	196
Msa1135870	AT5G15310.1	72.881	118	32	0	1	118	1	118	5.11e-61	198

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Find 73 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAACAAAGAAACA+TGG	0.557302	7_4:-3635293	Msa1135870:exon
AAAATGAGTTACTATTTGTA+GGG	0.472669	7_4:+3633959	None:intergenic
AAAGAATTCCAAGAGGTCAA+TGG	0.463998	7_4:-3634077	Msa1135870:CDS
AAAGAGAAACAAAGAAACAT+GGG	0.560455	7_4:-3635292	Msa1135870:exon
AACATAGCTCGTTTACTAAA+AGG	0.252975	7_4:-3633886	Msa1135870:CDS
AACATGGTCCTGGAAATTGG+AGG	0.614224	7_4:-3635183	Msa1135870:CDS
AACTATTAACCTGTCTTGGT+TGG	0.452548	7_4:+3635154	None:intergenic
AAGAACATGGTCCTGGAAAT+TGG	0.298566	7_4:-3635186	Msa1135870:CDS
AAGAATTCCAAGAGGTCAAT+GGG	0.456644	7_4:-3634076	Msa1135870:CDS
AAGCTCAAGAAATCACAAAC+AGG	0.513721	7_4:-3634150	Msa1135870:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCTATAGAATAGAAATTGG+TGG	-	chr7_4:3633140-3633159	Msa1135870:three_prime_UTR	30.0%
ACAAGTATGATATCTTCTTC+AGG	+	chr7_4:3633268-3633287	None:intergenic	30.0%
TATGAACTATTAACCTGTCT+TGG	+	chr7_4:3633338-3633357	None:intergenic	30.0%
TTCCTAAAAGATCTTGAAGA+TGG	+	chr7_4:3633717-3633736	None:intergenic	30.0%
TTATGATTCACATGTCTAAC+TGG	-	chr7_4:3634212-3634231	Msa1135870:CDS	30.0%
ATGTCATTATCTGTTCTTTG+TGG	+	chr7_4:3634284-3634303	None:intergenic	30.0%
AACATAGCTCGTTTACTAAA+AGG	-	chr7_4:3634599-3634618	Msa1135870:intron	30.0%
CATTTCTCAAGCAAAGAAAA+GGG	+	chr7_4:3634881-3634900	None:intergenic	30.0%
CAGTAAGATACAAACAAATG+TGG	-	chr7_4:3635154-3635173	Msa1135870:intron	30.0%
GTCTATAGAATAGAAATTGG+TGG	-	chr7_4:3633140-3633159	Msa1135870:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	3633061	3635446	3633061	ID=Msa1135870;Name=Msa1135870
chr7_4	mRNA	3633061	3635446	3633061	ID=Msa1135870-mRNA-1;Parent=Msa1135870;Name=Msa1135870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=150\|1\|1\|1\|1\|1\|3\|476\|325
chr7_4	exon	3633061	3634251	3633061	ID=Msa1135870-mRNA-1:exon:1050;Parent=Msa1135870-mRNA-1
chr7_4	exon	3634767	3634896	3634767	ID=Msa1135870-mRNA-1:exon:1049;Parent=Msa1135870-mRNA-1
chr7_4	exon	3635164	3635446	3635164	ID=Msa1135870-mRNA-1:exon:1048;Parent=Msa1135870-mRNA-1
chr7_4	five_prime_UTR	3635297	3635446	3635297	ID=Msa1135870-mRNA-1:five_prime_utr;Parent=Msa1135870-mRNA-1
chr7_4	CDS	3635164	3635296	3635164	ID=Msa1135870-mRNA-1:cds;Parent=Msa1135870-mRNA-1
chr7_4	CDS	3634767	3634896	3634767	ID=Msa1135870-mRNA-1:cds;Parent=Msa1135870-mRNA-1
chr7_4	CDS	3633537	3634251	3633537	ID=Msa1135870-mRNA-1:cds;Parent=Msa1135870-mRNA-1
chr7_4	three_prime_UTR	3633061	3633536	3633061	ID=Msa1135870-mRNA-1:three_prime_utr;Parent=Msa1135870-mRNA-1

Gene Sequence

>Msa1135870

ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTTAAAAAAGGACCATGGACTCCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAAAGTTGCAGACTTAGATGGACTAATTACCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAAGCTCAAGAAATCACAAACAGGTAATAATGCTGAATGCATTAATTTTGAAGAAGAAAAATTTTCAGCATCTCAAAGAATTCCAAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCAAATGGCCAAAAAAGCACTTAATGAAGCACTTTCACCACAAAAATTATCTTCTAATTTTTCTACTTCAAACCCTACAAATAGTAACTCATTTTCTTCCACTAAAGAACCAGGTCAATCTTTTTGCTATGCTTCAAGTGCAGATAACATAGCTCGTTTACTAAAAGGTTGGATGAAAAATCCAATCAAATCATCGGTTAGTACTAATTCTGCTGTGACACAAAATTCCTTCAACAACTTTGATTCTGCTTCTAGTAGTGGAACAAAGGGTGAAATATTGTCTGAAACATTTGAATCTTTGTTTGGTTTTGAACCTTTGGAGTCTTTGGAGTCATCAAATTCTGAATTCTCTCGTCAATCTTTGTCACCAGACGCAACGGTTTTACAAGATGAAAGTAAGCCTGATGTTGGTTCAGAATCAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCAAGTTGTCCTGAAAAGGTATTAGGTTGTGGTGGTGATCATGCTCAAGTTTTCTAG

Protein sequence

>Msa1135870

MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKSQTGNNAECINFEEEKFSASQRIPRGQWERRLQTDIQMAKKALNEALSPQKLSSNFSTSNPTNSNSFSSTKEPGQSFCYASSADNIARLLKGWMKNPIKSSVSTNSAVTQNSFNNFDSASSSGTKGEILSETFESLFGFEPLESLESSNSEFSRQSLSPDATVLQDESKPDVGSESMPFSLLEKWLLDEASCPEKVLGCGGDHAQVF*