AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1006860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006860 MtrunA17_Chr7g0217221 77.914 326 16 3 1 325 1 271 0.0 502
Msa1006860 MtrunA17_Chr6g0453211 66.258 326 81 8 1 314 1 309 1.78e-135 387
Msa1006860 MtrunA17_Chr3g0092401 53.939 330 111 10 1 318 2 302 2.95e-104 307
Msa1006860 MtrunA17_Chr4g0060721 50.287 348 113 11 1 315 2 322 5.17e-102 303
Msa1006860 MtrunA17_Chr7g0254411 43.909 353 122 8 1 307 1 323 2.53e-78 242
Msa1006860 MtrunA17_Chr6g0453471 50.732 205 87 5 1 191 1 205 3.72e-63 204
Msa1006860 MtrunA17_Chr4g0039971 71.552 116 33 0 1 116 2 117 9.83e-60 195
Msa1006860 MtrunA17_Chr3g0115821 69.828 116 35 0 1 116 1 116 1.36e-59 194
Msa1006860 MtrunA17_Chr7g0217741 70.339 118 35 0 1 118 1 118 1.62e-59 193
Msa1006860 MtrunA17_Chr2g0323411 67.227 119 39 0 1 119 1 119 1.96e-58 191
Msa1006860 MtrunA17_Chr1g0203411 64.844 128 44 1 1 128 1 127 3.29e-58 189
Msa1006860 MtrunA17_Chr4g0042671 70.339 118 35 0 1 118 1 118 3.76e-57 190
Msa1006860 MtrunA17_Chr1g0187761 63.281 128 47 0 1 128 1 128 7.47e-57 184
Msa1006860 MtrunA17_Chr7g0261281 62.903 124 46 0 1 124 1 124 5.87e-55 180
Msa1006860 MtrunA17_Chr7g0274581 59.350 123 50 0 1 123 1 123 7.31e-55 177
Msa1006860 MtrunA17_Chr8g0346561 63.333 120 44 0 1 120 1 120 8.23e-55 181
Msa1006860 MtrunA17_Chr5g0395281 65.254 118 41 0 1 118 1 118 1.35e-54 180
Msa1006860 MtrunA17_Chr1g0167661 66.379 116 39 0 1 116 1 116 1.77e-54 178
Msa1006860 MtrunA17_Chr5g0410961 65.254 118 41 0 1 118 1 118 2.41e-54 181
Msa1006860 MtrunA17_Chr2g0281071 66.387 119 39 1 1 118 1 119 2.51e-54 181
Msa1006860 MtrunA17_Chr1g0167691 66.379 116 39 0 1 116 1 116 2.62e-54 178
Msa1006860 MtrunA17_Chr7g0275911 62.500 120 45 0 1 120 1 120 4.43e-54 177
Msa1006860 MtrunA17_Chr4g0048511 64.706 119 41 1 1 118 1 119 7.38e-54 180
Msa1006860 MtrunA17_Chr4g0068061 64.655 116 41 0 1 116 1 116 4.46e-53 177
Msa1006860 MtrunA17_Chr3g0131121 65.517 116 40 0 1 116 1 116 8.09e-53 175
Msa1006860 MtrunA17_Chr8g0349261 67.797 118 36 2 1 116 1 118 9.50e-53 175
Msa1006860 MtrunA17_Chr3g0110351 67.797 118 38 0 1 118 1 118 1.21e-52 175
Msa1006860 MtrunA17_Chr5g0434571 67.797 118 38 0 1 118 37 154 2.65e-52 176
Msa1006860 MtrunA17_Chr6g0452271 63.559 118 43 0 1 118 1 118 3.67e-52 175
Msa1006860 MtrunA17_Chr4g0057031 67.797 118 38 0 1 118 1 118 5.07e-52 172
Msa1006860 MtrunA17_Chr1g0151941 64.957 117 40 1 1 116 1 117 6.27e-52 172
Msa1006860 MtrunA17_Chr4g0070611 62.602 123 46 0 1 123 1 123 6.74e-52 173
Msa1006860 MtrunA17_Chr4g0037141 62.931 116 43 0 1 116 1 116 1.04e-51 172
Msa1006860 MtrunA17_Chr4g0070641 62.602 123 46 0 1 123 1 123 1.08e-51 168
Msa1006860 MtrunA17_Chr3g0135311 67.521 117 37 1 1 116 1 117 2.72e-51 173
Msa1006860 MtrunA17_Chr3g0103281 62.069 116 44 0 1 116 1 116 3.54e-50 169
Msa1006860 MtrunA17_Chr1g0152011 64.957 117 40 1 1 116 1 117 5.58e-50 169
Msa1006860 MtrunA17_Chr5g0400821 63.636 121 43 1 1 120 1 121 1.01e-49 167
Msa1006860 MtrunA17_Chr8g0387421 62.712 118 44 0 1 118 1 118 1.03e-49 168
Msa1006860 MtrunA17_Chr7g0228891 64.957 117 41 0 1 117 1 117 1.05e-49 166
Msa1006860 MtrunA17_Chr2g0311221 63.636 110 40 0 2 111 4 113 1.83e-49 167
Msa1006860 MtrunA17_Chr7g0264641 63.248 117 42 1 1 116 1 117 3.91e-49 165
Msa1006860 MtrunA17_Chr4g0028311 61.983 121 45 1 1 120 1 121 4.94e-49 166
Msa1006860 MtrunA17_Chr5g0435101 61.207 116 45 0 3 118 2 117 6.15e-49 162
Msa1006860 MtrunA17_Chr8g0385321 59.483 116 47 0 1 116 1 116 1.29e-48 165
Msa1006860 MtrunA17_Chr4g0022931 57.480 127 53 1 1 126 1 127 3.61e-48 162
Msa1006860 MtrunA17_Chr3g0121241 61.607 112 43 0 5 116 35 146 1.78e-47 162
Msa1006860 MtrunA17_Chr1g0193371 59.664 119 48 0 1 119 1 119 5.97e-47 162
Msa1006860 MtrunA17_Chr1g0194951 60.345 116 46 0 1 116 1 116 6.65e-47 162
Msa1006860 MtrunA17_Chr2g0327351 63.063 111 40 1 1 110 1 111 1.48e-46 160
Msa1006860 MtrunA17_Chr2g0323351 57.851 121 51 0 1 121 1 121 1.77e-46 157
Msa1006860 MtrunA17_Chr4g0072751 64.865 111 38 1 1 110 1 111 1.94e-46 160
Msa1006860 MtrunA17_Chr4g0058631 60.169 118 47 0 1 118 1 118 2.96e-46 160
Msa1006860 MtrunA17_Chr2g0309911 60.360 111 44 0 6 116 5 115 4.64e-46 158
Msa1006860 MtrunA17_Chr4g0022901 59.483 116 46 1 1 115 1 116 7.26e-46 157
Msa1006860 MtrunA17_Chr5g0397231 62.727 110 41 0 1 110 1 110 7.46e-46 158
Msa1006860 MtrunA17_Chr4g0054391 63.636 110 39 1 1 109 1 110 9.26e-46 157
Msa1006860 MtrunA17_Chr3g0117091 50.303 165 73 2 1 156 1 165 1.73e-45 158
Msa1006860 MtrunA17_Chr7g0270891 57.627 118 50 0 1 118 1 118 3.11e-45 157
Msa1006860 MtrunA17_Chr1g0211161 52.000 150 65 1 3 145 4 153 5.67e-45 153
Msa1006860 MtrunA17_Chr8g0342541 56.897 116 50 0 1 116 1 116 5.80e-45 156
Msa1006860 MtrunA17_Chr2g0330041 58.621 116 48 0 1 116 1 116 6.26e-45 157
Msa1006860 MtrunA17_Chr6g0487491 53.237 139 56 2 1 130 1 139 7.05e-45 154
Msa1006860 MtrunA17_Chr1g0193801 55.932 118 52 0 1 118 1 118 1.20e-44 156
Msa1006860 MtrunA17_Chr8g0342521 56.897 116 50 0 1 116 1 116 1.80e-44 155
Msa1006860 MtrunA17_Chr4g0022911 57.759 116 48 1 1 115 1 116 3.52e-44 153
Msa1006860 MtrunA17_Chr4g0022881 57.018 114 49 0 1 114 1 114 6.87e-44 150
Msa1006860 MtrunA17_Chr7g0271241 62.385 109 41 0 1 109 1 109 2.71e-43 153
Msa1006860 MtrunA17_Chr5g0417821 57.547 106 45 0 11 116 6 111 1.11e-42 149
Msa1006860 MtrunA17_Chr7g0269831 59.483 116 47 0 1 116 1 116 1.56e-42 150
Msa1006860 MtrunA17_Chr4g0022891 57.522 113 48 0 1 113 1 113 3.38e-42 146
Msa1006860 MtrunA17_Chr8g0342481 56.410 117 50 1 1 116 1 117 4.32e-42 150
Msa1006860 MtrunA17_Chr4g0044421 51.908 131 63 0 1 131 1 131 4.83e-42 144
Msa1006860 MtrunA17_Chr1g0203441 58.879 107 44 0 13 119 14 120 6.39e-42 146
Msa1006860 MtrunA17_Chr7g0240821 51.449 138 60 1 17 147 6 143 1.02e-41 144
Msa1006860 MtrunA17_Chr8g0343831 60.909 110 43 0 12 121 8 117 1.94e-41 144
Msa1006860 MtrunA17_Chr3g0080861 59.434 106 43 0 12 117 37 142 2.24e-41 150
Msa1006860 MtrunA17_Chr4g0055981 60.748 107 42 0 9 115 52 158 3.89e-41 143
Msa1006860 MtrunA17_Chr3g0099131 57.009 107 46 0 12 118 41 147 7.37e-41 149
Msa1006860 MtrunA17_Chr5g0434911 57.273 110 47 0 7 116 16 125 9.59e-41 143
Msa1006860 MtrunA17_Chr7g0228231 53.043 115 54 0 12 126 14 128 1.01e-40 141
Msa1006860 MtrunA17_Chr5g0434931 59.434 106 43 0 11 116 34 139 1.91e-40 143
Msa1006860 MtrunA17_Chr2g0328771 58.491 106 44 0 12 117 20 125 2.83e-40 143
Msa1006860 MtrunA17_Chr4g0032401 59.434 106 43 0 12 117 17 122 5.31e-40 143
Msa1006860 MtrunA17_Chr1g0168661 57.143 112 48 0 6 117 15 126 5.97e-40 140
Msa1006860 MtrunA17_Chr8g0354661 58.491 106 44 0 12 117 37 142 6.55e-40 147
Msa1006860 MtrunA17_Chr1g0194291 57.407 108 46 0 11 118 20 127 1.63e-39 140
Msa1006860 MtrunA17_Chr3g0088461 57.273 110 47 0 8 117 18 127 2.53e-39 141
Msa1006860 MtrunA17_Chr6g0450101 50.833 120 57 1 1 118 1 120 5.14e-39 137
Msa1006860 MtrunA17_Chr6g0470971 56.250 112 49 0 9 120 11 122 5.70e-39 139
Msa1006860 MtrunA17_Chr4g0042611 68.182 88 28 0 1 88 1 88 6.17e-39 132
Msa1006860 MtrunA17_Chr1g0194301 51.261 119 58 0 8 126 29 147 7.69e-39 138
Msa1006860 MtrunA17_Chr7g0220341 57.143 112 46 1 11 120 24 135 8.03e-39 138
Msa1006860 MtrunA17_Chr1g0186061 58.095 105 44 0 13 117 21 125 9.62e-39 137
Msa1006860 MtrunA17_Chr5g0434831 56.075 107 47 0 10 116 5 111 2.19e-38 134
Msa1006860 MtrunA17_Chr1g0209661 33.218 289 144 9 12 274 27 292 7.72e-38 137
Msa1006860 MtrunA17_Chr7g0228991 58.491 106 44 0 11 116 28 133 9.18e-38 135
Msa1006860 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 9.83e-38 139
Msa1006860 MtrunA17_Chr2g0322521 58.879 107 44 0 9 115 26 132 1.38e-37 138
Msa1006860 MtrunA17_Chr2g0327821 50.435 115 57 0 9 123 3 117 1.44e-37 134
Msa1006860 MtrunA17_Chr5g0434841 56.604 106 46 0 11 116 19 124 1.80e-37 136
Msa1006860 MtrunA17_Chr8g0360111 57.843 102 43 0 11 112 24 125 1.35e-36 132
Msa1006860 MtrunA17_Chr8g0334881 51.852 108 51 1 8 114 6 113 3.46e-35 130
Msa1006860 MtrunA17_Chr2g0294811 58.696 92 38 0 1 92 1 92 5.45e-35 123
Msa1006860 MtrunA17_Chr7g0247131 75.676 74 18 0 44 117 10 83 5.52e-35 128
Msa1006860 MtrunA17_Chr4g0068921 40.556 180 95 3 8 185 20 189 4.17e-34 124
Msa1006860 MtrunA17_Chr2g0293911 51.351 111 54 0 8 118 20 130 1.55e-33 125
Msa1006860 MtrunA17_Chr5g0395221 60.714 84 33 0 5 88 5 88 2.79e-33 118
Msa1006860 MtrunA17_Chr1g0180391 48.624 109 56 0 12 120 19 127 7.74e-33 121
Msa1006860 MtrunA17_Chr2g0323321 51.429 105 50 1 1 105 1 104 2.51e-32 116
Msa1006860 MtrunA17_Chr4g0013361 49.038 104 52 1 12 114 10 113 6.43e-32 120
Msa1006860 MtrunA17_Chr8g0342531 44.828 116 59 1 1 111 1 116 1.56e-31 116
Msa1006860 MtrunA17_Chr3g0099141 52.809 89 42 0 8 96 36 124 2.13e-31 115
Msa1006860 MtrunA17_Chr5g0441131 48.598 107 54 1 12 117 9 115 2.27e-31 116
Msa1006860 MtrunA17_Chr8g0342511 55.172 87 39 0 1 87 1 87 2.71e-31 113
Msa1006860 MtrunA17_Chr4g0030881 48.246 114 52 1 9 115 4 117 4.75e-31 117
Msa1006860 MtrunA17_Chr1g0192411 47.273 110 58 0 8 117 8 117 1.76e-30 119
Msa1006860 MtrunA17_Chr5g0440781 42.336 137 72 3 12 145 12 144 1.76e-29 111
Msa1006860 MtrunA17_Chr5g0440761 42.647 136 71 3 13 145 13 144 4.68e-29 112
Msa1006860 MtrunA17_Chr5g0441141 42.336 137 72 3 12 145 12 144 4.80e-29 112
Msa1006860 MtrunA17_Chr4g0008551 41.007 139 73 2 14 144 38 175 5.28e-29 114
Msa1006860 MtrunA17_Chr8g0342461 52.222 90 42 1 1 89 1 90 1.08e-27 105
Msa1006860 MtrunA17_Chr8g0342471 52.222 90 42 1 1 89 1 90 4.05e-27 103
Msa1006860 MtrunA17_Chr7g0229101 64.286 70 25 0 44 113 4 73 9.53e-27 104
Msa1006860 MtrunA17_Chr5g0401731 49.020 102 51 1 14 115 15 115 1.01e-26 107
Msa1006860 MtrunA17_Chr4g0053431 43.609 133 65 3 14 142 5 131 1.38e-26 105
Msa1006860 MtrunA17_Chr6g0454921 48.039 102 52 1 14 115 15 115 2.31e-26 103
Msa1006860 MtrunA17_Chr3g0133601 47.059 102 53 1 14 115 37 137 1.04e-25 102
Msa1006860 MtrunA17_Chr7g0229131 58.904 73 30 0 44 116 4 76 1.13e-25 100
Msa1006860 MtrunA17_Chr3g0139671 44.660 103 56 1 14 116 85 186 4.08e-25 106
Msa1006860 MtrunA17_Chr3g0139671 31.132 106 71 2 14 118 33 137 1.37e-11 65.5
Msa1006860 MtrunA17_Chr7g0238631 47.573 103 53 1 14 116 113 214 2.04e-24 103
Msa1006860 MtrunA17_Chr1g0157731 41.748 103 59 1 14 116 91 192 8.53e-24 102
Msa1006860 MtrunA17_Chr1g0157731 31.132 106 71 2 14 118 39 143 2.61e-11 64.7
Msa1006860 MtrunA17_Chr6g0480581 44.554 101 55 1 14 114 4 103 1.20e-23 97.4
Msa1006860 MtrunA17_Chr5g0434901 61.765 68 26 0 46 113 7 74 1.22e-23 94.0
Msa1006860 MtrunA17_Chr7g0238651 30.890 191 113 4 17 205 10 183 4.96e-23 97.8
Msa1006860 MtrunA17_Chr5g0429661 40.000 125 72 2 10 134 118 239 3.52e-22 95.5
Msa1006860 MtrunA17_Chr5g0417621 41.905 105 60 1 14 118 134 237 6.71e-22 95.5
Msa1006860 MtrunA17_Chr6g0460671 41.176 102 59 1 14 115 99 199 6.78e-22 94.7
Msa1006860 MtrunA17_Chr4g0058991 40.909 110 64 1 9 118 204 312 9.38e-22 95.5
Msa1006860 MtrunA17_Chr3g0117511 41.905 105 60 1 14 118 183 286 1.82e-21 94.4
Msa1006860 MtrunA17_Chr5g0437321 44.340 106 57 2 8 112 12 116 4.87e-21 91.3
Msa1006860 MtrunA17_Chr5g0425591 45.783 83 44 1 12 93 9 91 5.52e-21 85.9
Msa1006860 MtrunA17_Chr4g0042501 37.069 116 72 1 14 129 105 219 5.78e-21 92.8
Msa1006860 MtrunA17_Chr6g0460661 41.237 97 56 1 14 110 16 111 6.18e-21 87.8
Msa1006860 MtrunA17_Chr7g0228531 41.379 116 65 3 12 126 218 331 1.14e-20 92.0
Msa1006860 MtrunA17_Chr3g0093811 54.430 79 34 1 44 122 14 90 1.04e-19 87.0
Msa1006860 MtrunA17_Chr3g0125801 39.640 111 66 1 8 118 10 119 3.13e-19 86.3
Msa1006860 MtrunA17_Chr5g0397841 42.708 96 54 1 14 109 110 204 4.32e-19 87.8
Msa1006860 MtrunA17_Chr6g0453751 42.391 92 44 2 11 93 19 110 1.42e-18 80.5
Msa1006860 MtrunA17_Chr7g0254261 38.889 108 65 1 14 121 89 195 2.45e-18 84.7
Msa1006860 MtrunA17_Chr7g0228481 38.793 116 68 3 12 126 218 331 3.26e-17 82.0
Msa1006860 MtrunA17_Chr8g0362231 36.522 115 72 1 17 131 25 138 4.73e-17 81.6
Msa1006860 MtrunA17_Chr5g0416341 38.614 101 61 1 17 117 29 128 1.44e-16 80.1
Msa1006860 MtrunA17_Chr7g0228401 43.023 86 48 1 25 110 290 374 2.27e-16 79.7
Msa1006860 MtrunA17_Chr1g0177901 40.594 101 58 2 23 123 3 101 2.98e-16 76.3
Msa1006860 MtrunA17_Chr7g0233061 37.069 116 61 4 14 123 180 289 3.85e-15 75.5
Msa1006860 MtrunA17_Chr1g0193901 51.724 58 27 1 12 68 11 68 4.48e-15 70.5
Msa1006860 MtrunA17_Chr1g0193891 51.724 58 27 1 12 68 11 68 4.48e-15 70.5
Msa1006860 MtrunA17_Chr1g0193871 51.724 58 27 1 12 68 11 68 4.48e-15 70.5
Msa1006860 MtrunA17_Chr1g0193881 51.724 58 27 1 12 68 11 68 4.48e-15 70.5
Msa1006860 MtrunA17_Chr7g0247141 61.702 47 17 1 1 46 1 47 4.62e-15 68.9
Msa1006860 MtrunA17_Chr5g0434871 60.465 43 17 0 74 116 2 44 5.66e-13 63.5
Msa1006860 MtrunA17_Chr5g0434891 66.667 39 13 0 77 115 1 39 6.91e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1006860 AT3G28910.1 54.878 328 107 8 1 308 1 307 1.24e-105 312
Msa1006860 AT5G62470.2 51.695 354 129 6 1 319 1 347 7.48e-105 311
Msa1006860 AT5G62470.1 51.695 354 128 7 1 319 1 346 3.37e-103 306
Msa1006860 AT3G47600.1 52.507 339 108 8 1 309 1 316 1.21e-102 305
Msa1006860 AT1G74650.1 51.198 334 110 9 1 307 1 308 3.56e-90 273
Msa1006860 AT1G08810.1 48.318 327 85 8 1 309 1 261 1.82e-85 259
Msa1006860 AT3G47600.2 47.458 295 102 9 45 309 39 310 3.04e-66 211
Msa1006860 AT3G01140.2 51.759 199 72 4 1 177 1 197 1.64e-62 202
Msa1006860 AT5G15310.4 72.881 118 32 0 1 118 1 118 2.11e-61 196
Msa1006860 AT5G15310.2 72.881 118 32 0 1 118 1 118 5.24e-61 197
Msa1006860 AT5G15310.1 72.881 118 32 0 1 118 1 118 5.28e-61 198
Msa1006860 AT3G01140.1 51.282 195 71 4 5 177 48 240 2.87e-59 195
Msa1006860 AT5G16770.4 70.690 116 34 0 1 116 1 116 6.37e-59 192
Msa1006860 AT5G16770.3 70.690 116 34 0 1 116 1 116 6.37e-59 192
Msa1006860 AT3G02940.2 68.966 116 36 0 1 116 1 116 1.09e-58 191
Msa1006860 AT5G16770.1 70.690 116 34 0 1 116 1 116 2.14e-58 191
Msa1006860 AT5G16770.2 70.690 116 34 0 1 116 1 116 2.14e-58 191
Msa1006860 AT3G02940.1 68.966 116 36 0 1 116 1 116 2.76e-58 191
Msa1006860 AT3G02940.3 68.966 116 36 0 1 116 1 116 2.76e-58 191
Msa1006860 AT2G31180.1 68.908 119 37 0 1 119 1 119 1.44e-57 186
Msa1006860 AT1G06180.1 67.460 126 41 0 1 126 1 126 1.71e-57 186
Msa1006860 AT3G23250.1 66.667 120 40 0 1 120 1 120 2.17e-57 187
Msa1006860 AT4G28110.1 66.387 119 40 0 1 119 1 119 2.36e-57 187
Msa1006860 AT3G61250.1 69.828 116 35 0 1 116 1 116 7.06e-57 186
Msa1006860 AT1G34670.1 67.241 116 38 0 1 116 1 116 4.85e-56 186
Msa1006860 AT4G21440.1 66.102 118 40 0 1 118 1 118 3.65e-55 183
Msa1006860 AT1G56160.1 65.217 115 40 0 2 116 4 118 7.61e-55 181
Msa1006860 AT4G05100.1 65.546 119 40 1 1 118 1 119 6.69e-54 179
Msa1006860 AT1G22640.1 64.655 116 41 0 1 116 1 116 3.59e-53 175
Msa1006860 AT5G61420.2 63.793 116 42 0 1 116 1 116 1.36e-52 177
Msa1006860 AT5G10280.1 64.655 116 41 0 1 116 1 116 1.86e-52 176
Msa1006860 AT2G16720.1 64.655 116 41 0 1 116 1 116 1.87e-52 174
Msa1006860 AT1G66230.1 66.102 118 40 0 1 118 1 118 2.42e-52 174
Msa1006860 AT1G79180.1 63.559 118 43 0 2 119 4 121 3.06e-52 174
Msa1006860 AT5G54230.1 66.949 118 39 0 1 118 1 118 3.09e-52 175
Msa1006860 AT4G17785.2 64.957 117 40 1 1 116 1 117 6.83e-52 175
Msa1006860 AT5G56110.1 64.655 116 41 0 1 116 1 116 7.22e-52 174
Msa1006860 AT5G07690.1 63.793 116 42 0 1 116 1 116 8.73e-52 174
Msa1006860 AT4G17785.1 64.957 117 40 1 1 116 1 117 9.46e-52 175
Msa1006860 AT5G60890.1 63.559 118 43 0 1 118 1 118 9.68e-52 173
Msa1006860 AT4G09460.1 63.793 116 42 0 1 116 1 116 1.62e-51 170
Msa1006860 AT4G38620.1 63.793 116 42 0 1 116 1 116 1.68e-51 172
Msa1006860 AT3G13540.1 55.556 144 58 2 5 142 16 159 2.48e-51 170
Msa1006860 AT5G65230.1 63.793 116 42 0 1 116 1 116 2.69e-51 172
Msa1006860 AT5G49330.1 62.931 116 43 0 1 116 1 116 3.32e-51 173
Msa1006860 AT1G35515.1 62.069 116 44 0 1 116 1 116 4.08e-51 169
Msa1006860 AT4G34990.1 62.931 116 43 0 1 116 1 116 6.58e-51 170
Msa1006860 AT1G18570.1 65.546 119 40 1 1 118 1 119 9.97e-51 172
Msa1006860 AT5G57620.1 61.417 127 48 1 1 126 1 127 1.12e-50 171
Msa1006860 AT1G74080.1 61.864 118 45 0 1 118 1 118 3.95e-50 170
Msa1006860 AT3G49690.1 64.463 121 42 1 1 120 1 121 5.23e-50 169
Msa1006860 AT1G16490.1 58.400 125 51 1 2 126 4 127 6.43e-50 167
Msa1006860 AT4G37780.1 56.296 135 58 1 1 134 1 135 8.34e-50 168
Msa1006860 AT4G12350.1 62.500 120 45 0 1 120 1 120 1.02e-49 167
Msa1006860 AT5G16600.1 63.559 118 43 0 1 118 1 118 1.38e-49 168
Msa1006860 AT5G07700.1 61.207 116 45 0 1 116 1 116 1.38e-49 169
Msa1006860 AT5G07700.2 61.207 116 45 0 1 116 1 116 1.38e-49 169
Msa1006860 AT2G47460.1 61.207 116 45 0 1 116 1 116 4.26e-49 168
Msa1006860 AT1G74430.1 64.407 118 42 0 1 118 1 118 5.25e-49 165
Msa1006860 AT5G65790.1 63.636 121 43 1 1 120 1 121 5.83e-49 168
Msa1006860 AT4G22680.1 63.559 118 43 0 1 118 1 118 9.56e-49 164
Msa1006860 AT3G62610.1 62.931 116 43 0 1 116 1 116 1.98e-48 166
Msa1006860 AT5G23000.1 62.393 117 43 1 1 116 1 117 2.41e-48 165
Msa1006860 AT1G63910.1 61.017 118 46 0 1 118 1 118 2.95e-48 166
Msa1006860 AT2G36890.1 63.248 117 42 1 1 116 1 117 5.68e-48 163
Msa1006860 AT2G36890.2 63.248 117 42 1 1 116 42 158 1.06e-47 164
Msa1006860 AT3G12820.1 62.069 116 44 0 3 118 5 120 1.60e-47 160
Msa1006860 AT5G14750.1 66.346 104 35 0 13 116 17 120 5.26e-47 157
Msa1006860 AT3G28470.1 60.909 110 43 0 1 110 1 110 1.58e-46 160
Msa1006860 AT5G62320.1 52.381 147 62 2 2 141 3 148 2.17e-46 157
Msa1006860 AT5G26660.1 50.000 150 66 1 1 141 1 150 3.08e-46 160
Msa1006860 AT1G18710.1 60.169 118 47 0 1 118 1 118 3.81e-46 157
Msa1006860 AT1G79180.2 49.669 151 43 1 2 119 4 154 4.00e-46 159
Msa1006860 AT1G09540.1 55.147 136 61 0 1 136 1 136 4.78e-46 160
Msa1006860 AT5G14340.1 60.684 117 46 0 1 117 13 129 5.61e-46 157
Msa1006860 AT3G13890.2 58.621 116 48 0 1 116 1 116 5.89e-46 159
Msa1006860 AT4G01680.3 58.974 117 48 0 1 117 1 117 1.36e-45 155
Msa1006860 AT3G28910.2 43.254 252 102 8 77 308 1 231 1.46e-45 155
Msa1006860 AT5G40330.1 64.423 104 37 0 13 116 13 116 1.76e-45 154
Msa1006860 AT4G01680.1 58.974 117 48 0 1 117 1 117 6.51e-45 156
Msa1006860 AT3G27920.1 64.423 104 37 0 13 116 15 118 1.45e-44 152
Msa1006860 AT5G35550.1 59.292 113 46 0 9 121 11 123 1.59e-44 153
Msa1006860 AT1G57560.1 56.780 118 51 0 1 118 1 118 3.02e-44 154
Msa1006860 AT1G57560.2 56.780 118 51 0 1 118 1 118 3.80e-44 152
Msa1006860 AT3G12720.1 57.658 111 47 0 6 116 16 126 4.17e-43 150
Msa1006860 AT3G13890.1 54.400 125 48 1 1 116 1 125 6.37e-43 152
Msa1006860 AT5G52600.1 58.407 113 44 1 6 115 3 115 8.19e-43 147
Msa1006860 AT3G01530.1 56.637 113 48 1 8 119 20 132 1.59e-41 144
Msa1006860 AT2G32460.1 61.905 105 40 0 11 115 17 121 1.92e-41 150
Msa1006860 AT4G01680.2 53.488 129 48 1 1 117 1 129 1.99e-41 147
Msa1006860 AT2G32460.2 61.905 105 40 0 11 115 5 109 2.04e-41 150
Msa1006860 AT3G30210.1 59.633 109 44 0 11 119 26 134 2.54e-41 145
Msa1006860 AT5G55020.1 60.748 107 42 0 12 118 26 132 2.88e-41 150
Msa1006860 AT1G66370.1 56.522 115 46 1 1 115 1 111 9.79e-41 143
Msa1006860 AT2G26960.1 60.377 106 42 0 9 114 17 122 9.99e-41 147
Msa1006860 AT5G06100.1 55.556 108 48 0 8 115 28 135 1.45e-40 147
Msa1006860 AT3G11440.2 55.769 104 46 0 12 115 41 144 4.56e-40 146
Msa1006860 AT5G06100.5 55.556 108 48 0 8 115 28 135 4.61e-40 147
Msa1006860 AT5G06100.2 55.556 108 48 0 8 115 28 135 4.61e-40 147
Msa1006860 AT5G06100.3 55.556 108 48 0 8 115 28 135 4.61e-40 147
Msa1006860 AT5G06100.4 55.556 108 48 0 8 115 28 135 4.61e-40 147
Msa1006860 AT4G26930.1 57.658 111 43 1 8 114 11 121 8.96e-40 144
Msa1006860 AT3G11440.3 55.769 104 46 0 12 115 41 144 1.78e-39 146
Msa1006860 AT3G11440.4 55.769 104 46 0 12 115 41 144 1.78e-39 146
Msa1006860 AT3G11440.1 55.769 104 46 0 12 115 41 144 1.78e-39 146
Msa1006860 AT3G27810.1 54.630 108 49 0 12 119 20 127 1.78e-39 139
Msa1006860 AT3G24310.1 58.716 109 45 0 9 117 15 123 2.31e-39 140
Msa1006860 AT4G13480.1 57.759 116 47 1 13 128 7 120 3.96e-39 139
Msa1006860 AT2G47190.1 56.604 106 46 0 12 117 20 125 7.36e-39 139
Msa1006860 AT5G12870.1 57.944 107 45 0 12 118 18 124 7.63e-39 139
Msa1006860 AT5G40350.1 54.630 108 49 0 12 119 17 124 2.39e-38 135
Msa1006860 AT3G08500.1 55.455 110 49 0 8 117 26 135 2.50e-38 139
Msa1006860 AT3G46130.1 51.786 112 54 0 9 120 6 117 1.04e-37 135
Msa1006860 AT1G25340.1 51.754 114 55 0 13 126 19 132 1.15e-37 136
Msa1006860 AT5G59780.3 51.786 112 54 0 9 120 5 116 3.11e-37 133
Msa1006860 AT4G25560.1 52.991 117 55 0 10 126 8 124 4.22e-37 134
Msa1006860 AT1G68320.1 50.427 117 58 0 10 126 17 133 8.26e-37 134
Msa1006860 AT3G48920.1 51.304 115 54 1 9 121 15 129 9.73e-37 133
Msa1006860 AT1G48000.1 53.774 106 49 0 12 117 32 137 1.61e-36 132
Msa1006860 AT5G52260.1 45.930 172 81 4 9 180 9 168 1.82e-36 132
Msa1006860 AT1G66380.1 57.547 106 45 0 10 115 6 111 1.25e-35 126
Msa1006860 AT1G66390.1 56.604 106 46 0 10 115 6 111 2.20e-34 126
Msa1006860 AT1G56650.1 56.604 106 46 0 10 115 6 111 3.95e-34 125
Msa1006860 AT1G25340.2 50.000 114 52 1 13 126 19 127 4.35e-34 126
Msa1006860 AT1G25340.3 50.000 114 52 1 13 126 19 127 6.92e-34 126
Msa1006860 AT1G74650.3 39.922 258 102 10 77 307 1 232 9.85e-34 125
Msa1006860 AT3G60460.1 50.467 107 52 1 9 114 8 114 1.08e-33 126
Msa1006860 AT5G49620.1 50.435 115 57 0 12 126 26 140 1.62e-32 123
Msa1006860 AT3G06490.1 49.580 119 60 0 8 126 15 133 1.80e-32 123
Msa1006860 AT3G53200.1 48.246 114 59 0 9 122 6 119 6.39e-32 119
Msa1006860 AT5G35550.2 67.532 77 25 0 45 121 50 126 8.24e-32 120
Msa1006860 AT5G14750.3 72.464 69 19 0 48 116 18 86 3.96e-31 115
Msa1006860 AT3G12820.2 70.423 71 21 0 48 118 2 72 2.57e-30 114
Msa1006860 AT5G49620.2 44.961 129 57 1 12 126 26 154 5.59e-29 114
Msa1006860 AT2G26950.1 47.525 101 53 0 9 109 13 113 1.06e-28 114
Msa1006860 AT5G26660.2 49.074 108 46 1 43 141 12 119 1.71e-28 112
Msa1006860 AT2G39880.1 49.057 106 45 2 14 115 50 150 8.76e-28 111
Msa1006860 AT2G23290.1 50.000 102 50 1 14 115 13 113 4.07e-27 108
Msa1006860 AT5G59780.2 56.410 78 34 0 43 120 18 95 2.02e-26 104
Msa1006860 AT4G37260.1 48.039 102 52 1 14 115 13 113 2.34e-26 106
Msa1006860 AT3G55730.1 47.170 106 47 2 14 115 56 156 2.97e-26 107
Msa1006860 AT3G46130.4 56.410 78 34 0 43 120 18 95 3.09e-26 104
Msa1006860 AT3G46130.3 57.143 77 33 0 44 120 9 85 3.26e-26 104
Msa1006860 AT1G74650.2 37.652 247 101 10 88 307 7 227 3.41e-26 104
Msa1006860 AT5G02320.1 47.115 104 54 1 14 117 127 229 4.29e-26 108
Msa1006860 AT5G02320.2 47.115 104 54 1 14 117 127 229 4.29e-26 108
Msa1006860 AT5G02320.3 48.077 104 53 1 14 117 67 169 5.90e-26 108
Msa1006860 AT3G09230.1 42.400 125 52 3 14 134 55 163 1.91e-25 105
Msa1006860 AT3G53200.2 52.381 84 40 0 39 122 3 86 6.87e-25 100
Msa1006860 AT3G27810.2 56.000 75 33 0 45 119 4 78 7.68e-25 99.4
Msa1006860 AT5G11510.3 43.689 103 57 1 14 116 81 182 2.31e-24 104
Msa1006860 AT5G11510.3 31.132 106 71 2 14 118 29 133 2.56e-11 65.1
Msa1006860 AT5G11510.1 43.689 103 57 1 14 116 81 182 2.31e-24 104
Msa1006860 AT5G11510.1 31.132 106 71 2 14 118 29 133 2.56e-11 65.1
Msa1006860 AT5G11510.4 43.689 103 57 1 14 116 81 182 2.31e-24 104
Msa1006860 AT5G11510.4 31.132 106 71 2 14 118 29 133 2.56e-11 65.1
Msa1006860 AT5G11510.2 43.925 107 51 2 14 116 81 182 2.64e-24 103
Msa1006860 AT5G11510.2 31.132 106 71 2 14 118 29 133 2.60e-11 65.1
Msa1006860 AT5G11510.5 43.925 107 51 2 14 116 81 182 2.91e-24 103
Msa1006860 AT5G11510.5 31.132 106 71 2 14 118 29 133 2.69e-11 65.1
Msa1006860 AT3G27785.1 42.241 116 66 1 9 124 184 298 5.00e-24 102
Msa1006860 AT1G69560.1 42.727 110 62 1 9 118 102 210 5.56e-24 100
Msa1006860 AT1G69560.2 42.727 110 62 1 9 118 118 226 6.69e-24 100
Msa1006860 AT4G32730.5 41.748 103 59 1 14 116 87 188 6.79e-24 102
Msa1006860 AT4G32730.4 41.748 103 59 1 14 116 87 188 6.79e-24 102
Msa1006860 AT4G32730.3 41.748 103 59 1 14 116 87 188 6.79e-24 102
Msa1006860 AT4G32730.2 41.748 103 59 1 14 116 87 188 6.79e-24 102
Msa1006860 AT4G32730.1 41.748 103 59 1 14 116 87 188 7.53e-24 102
Msa1006860 AT1G66380.3 63.889 72 26 0 44 115 7 78 8.85e-24 94.4
Msa1006860 AT5G40350.2 56.000 75 33 0 45 119 5 79 9.57e-24 95.9
Msa1006860 AT5G67300.1 32.022 178 96 3 14 191 6 158 1.73e-23 98.6
Msa1006860 AT3G50060.1 45.098 102 55 1 14 115 6 106 1.89e-23 98.6
Msa1006860 AT5G40360.1 39.823 113 66 2 9 121 153 263 2.08e-23 99.4
Msa1006860 AT1G17950.1 43.137 102 57 1 14 115 5 105 2.56e-23 97.1
Msa1006860 AT1G26780.1 41.284 109 63 1 14 122 98 205 3.31e-23 97.4
Msa1006860 AT1G22640.3 68.966 58 18 0 59 116 2 59 3.94e-23 95.1
Msa1006860 AT5G14750.4 70.690 58 17 0 59 116 2 59 5.07e-23 93.2
Msa1006860 AT5G14750.2 70.690 58 17 0 59 116 2 59 5.07e-23 93.2
Msa1006860 AT1G26780.2 41.284 109 63 1 14 122 98 205 7.86e-23 97.8
Msa1006860 AT3G09370.2 45.098 102 55 1 14 115 135 235 1.10e-22 98.6
Msa1006860 AT3G09370.1 45.098 102 55 1 14 115 130 230 1.16e-22 98.6
Msa1006860 AT3G23250.2 66.129 62 21 0 59 120 2 63 1.30e-22 94.7
Msa1006860 AT3G09370.3 45.098 102 55 1 14 115 143 243 1.38e-22 98.6
Msa1006860 AT2G37630.1 37.190 121 73 2 17 135 7 126 3.05e-22 96.3
Msa1006860 AT5G58850.1 39.655 116 64 2 14 124 105 219 3.94e-22 96.7
Msa1006860 AT5G11050.1 36.567 134 81 3 12 143 103 234 3.96e-22 96.7
Msa1006860 AT4G18770.1 38.393 112 68 1 9 120 212 322 4.86e-22 96.3
Msa1006860 AT1G66380.2 47.475 99 51 1 10 107 6 104 5.97e-22 89.4
Msa1006860 AT5G17800.1 40.187 107 63 1 14 120 93 198 3.72e-21 92.4
Msa1006860 AT1G18960.1 43.689 103 55 2 14 116 10 109 4.44e-21 92.0
Msa1006860 AT4G33450.1 37.838 111 68 1 9 119 14 123 5.89e-21 90.5
Msa1006860 AT1G73410.1 41.509 106 61 1 14 119 6 110 9.18e-21 90.1
Msa1006860 AT1G73410.2 41.509 106 61 1 14 119 6 110 1.89e-20 88.2
Msa1006860 AT1G08810.3 34.025 241 75 8 88 310 5 179 2.54e-20 87.4
Msa1006860 AT1G08810.2 34.025 241 75 8 88 310 5 179 2.54e-20 87.4
Msa1006860 AT1G71030.1 48.148 81 41 1 38 118 7 86 2.70e-19 84.7
Msa1006860 AT5G39700.1 37.273 110 68 1 9 118 51 159 3.55e-19 84.3
Msa1006860 AT1G71030.2 52.941 68 32 0 51 118 5 72 3.75e-19 84.0
Msa1006860 AT3G29020.1 36.190 105 66 1 14 118 65 168 5.55e-19 84.7
Msa1006860 AT2G25230.1 37.410 139 72 5 9 135 21 156 8.52e-19 84.3
Msa1006860 AT3G29020.2 36.190 105 66 1 14 118 67 170 1.27e-18 85.1
Msa1006860 AT4G00540.2 38.182 110 64 2 12 118 101 209 1.49e-17 83.2
Msa1006860 AT2G02820.3 35.246 122 75 2 17 135 33 153 1.75e-17 82.4
Msa1006860 AT4G00540.1 38.182 110 64 2 12 118 99 207 2.34e-17 82.8
Msa1006860 AT2G02820.2 35.246 122 75 2 17 135 33 153 3.04e-17 82.8
Msa1006860 AT2G02820.1 35.246 122 75 2 17 135 33 153 3.13e-17 82.4
Msa1006860 AT1G14350.2 38.614 101 61 1 17 117 28 127 3.27e-17 82.4
Msa1006860 AT1G14350.1 38.614 101 61 1 17 117 28 127 3.27e-17 82.4
Msa1006860 AT5G40430.1 34.711 121 72 3 9 124 49 167 1.13e-15 75.9
Msa1006860 AT4G25560.2 53.704 54 25 0 73 126 5 58 1.43e-12 66.6
Msa1006860 AT5G59780.1 50.980 51 25 0 70 120 1 51 1.07e-11 63.2
Msa1006860 AT3G46130.2 50.980 51 25 0 70 120 1 51 1.45e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAACACAATTTAAAGTT+AGG 0.242581 7_1:+5814063 Msa1006860:three_prime_UTR
AACATAGCTCGTTTACTAAA+AGG 0.252975 7_1:+5813436 Msa1006860:CDS
CTAAAACCTCTTGATTTGAT+AGG 0.282858 7_1:-5811894 None:intergenic
CTTCTTTCCCATTGACCTCT+TGG 0.294000 7_1:-5813253 None:intergenic
AAGAACATGGTCCTGGAAAT+TGG 0.298566 7_1:+5812135 Msa1006860:CDS
ATGTTGTTGCTTGGTTCTAA+TGG 0.331438 7_1:+5813906 Msa1006860:three_prime_UTR
GAAACATTTGAATCTTTGTT+TGG 0.358400 7_1:+5813574 Msa1006860:CDS
ATGTCATTATCTGTTCTTTG+TGG 0.377477 7_1:-5813118 None:intergenic
GTACTAACCGATGATTTGAT+TGG 0.381105 7_1:-5813472 None:intergenic
ACATCATCACAACCACATTT+CGG 0.388600 7_1:-5813887 None:intergenic
CACACTATTACATACCATAA+TGG 0.392645 7_1:+5814225 Msa1006860:three_prime_UTR
GAAAATGAGTTACTATTTGT+AGG 0.397920 7_1:-5813364 None:intergenic
GGAACAGCCCTCCAATTTCC+AGG 0.403047 7_1:-5812146 None:intergenic
GCAAAAGTTGCAGACTTAGA+TGG 0.403906 7_1:+5812463 Msa1006860:CDS
ACAAGTATGATATCTTCTTC+AGG 0.408889 7_1:-5812101 None:intergenic
AAGGTCTATAGAATAGAAAT+TGG 0.417780 7_1:+5811973 Msa1006860:five_prime_UTR
TTCCTAAAAGATCTTGAAGA+TGG 0.422826 7_1:-5812551 None:intergenic
TATGAACTATTAACCTGTCT+TGG 0.426618 7_1:-5812171 None:intergenic
AGATTGACCTGGTTCTTTAG+TGG 0.427373 7_1:-5813389 None:intergenic
TGGAACACAATTTAAAGTTA+GGG 0.434797 7_1:+5814064 Msa1006860:three_prime_UTR
AGAGAGGGAGAAGAAGAAAA+AGG 0.442631 7_1:+5811954 Msa1006860:five_prime_UTR
CCATTTCTCAAGCAAAGAAA+AGG 0.449839 7_1:-5813716 None:intergenic
AACTATTAACCTGTCTTGGT+TGG 0.452548 7_1:-5812167 None:intergenic
AAGAATTCCAAGAGGTCAAT+GGG 0.456644 7_1:+5813246 Msa1006860:CDS
ACCTAAGGCCAGGAATCAAA+AGG 0.458436 7_1:+5812493 Msa1006860:CDS
ATTGTTTCCGAACCAACATC+AGG 0.463985 7_1:-5813691 None:intergenic
AAAGAATTCCAAGAGGTCAA+TGG 0.463998 7_1:+5813245 Msa1006860:CDS
AAAATGAGTTACTATTTGTA+GGG 0.472669 7_1:-5813363 None:intergenic
CTCTAAAATCGTTGCAATTG+TGG 0.474970 7_1:+5814044 Msa1006860:three_prime_UTR
AGCAGAATCAAAGTTGTTGA+AGG 0.476547 7_1:-5813518 None:intergenic
CAATCTTTGATGTATTGCCT+TGG 0.485774 7_1:+5814162 Msa1006860:three_prime_UTR
CATTATCTGTTCTTTGTGGA+AGG 0.487830 7_1:-5813114 None:intergenic
TCTTGTAAAACAGTTGCGTC+TGG 0.491129 7_1:-5813658 None:intergenic
GTTGTGATGATGTTGTTGCT+TGG 0.499367 7_1:+5813897 Msa1006860:three_prime_UTR
AAGTAAGCCTGATGTTGGTT+CGG 0.506124 7_1:+5813684 Msa1006860:CDS
TATATACAAGAACATGGTCC+TGG 0.507906 7_1:+5812128 Msa1006860:CDS
TTTGATTCTGCTTCTAGTAG+TGG 0.508963 7_1:+5813529 Msa1006860:CDS
AGGGCTGTTCCAACCAAGAC+AGG 0.512302 7_1:+5812158 Msa1006860:CDS
AAGCTCAAGAAATCACAAAC+AGG 0.513721 7_1:+5813172 Msa1006860:CDS
TAGCTCGTTTACTAAAAGGT+TGG 0.524179 7_1:+5813440 Msa1006860:CDS
CCTAAGGCCAGGAATCAAAA+GGG 0.528003 7_1:+5812494 Msa1006860:CDS
TTAAAACCTATCAAATCAAG+AGG 0.529011 7_1:+5811888 None:intergenic
TTATATGATTTCTATAGGAA+AGG 0.530672 7_1:+5814130 Msa1006860:three_prime_UTR
TGGACTAATTACCTAAGGCC+AGG 0.531588 7_1:+5812483 Msa1006860:CDS
TGTATCTTACTGCAACGTAA+AGG 0.535748 7_1:-5813977 None:intergenic
TTCAAGTTCTGAAATATATG+TGG 0.543756 7_1:+5814087 Msa1006860:three_prime_UTR
TGCTTCTAGTAGTGGAACAA+AGG 0.546510 7_1:+5813537 Msa1006860:CDS
CTTGTTTCTCTTTAGTACCA+AGG 0.546941 7_1:-5814179 None:intergenic
ACTTCAAACAGATATTCAAA+TGG 0.548282 7_1:+5813276 Msa1006860:CDS
AAAAGAGAAACAAAGAAACA+TGG 0.557302 7_1:+5812028 Msa1006860:exon
AAAGAGAAACAAAGAAACAT+GGG 0.560455 7_1:+5812029 Msa1006860:exon
ATATCTTCTTCAGGAGTCCA+TGG 0.561586 7_1:-5812092 None:intergenic
CATTTCTCAAGCAAAGAAAA+GGG 0.562614 7_1:-5813715 None:intergenic
GCTTCTAGTAGTGGAACAAA+GGG 0.568848 7_1:+5813538 Msa1006860:CDS
GTCTATAGAATAGAAATTGG+TGG 0.569327 7_1:+5811976 Msa1006860:five_prime_UTR
TTAGATGGACTAATTACCTA+AGG 0.574462 7_1:+5812478 Msa1006860:CDS
GATGAAAGTAAGCCTGATGT+TGG 0.577667 7_1:+5813679 Msa1006860:CDS
TTTCGGTTTAGATAAAGCTA+CGG 0.578767 7_1:+5813831 Msa1006860:three_prime_UTR
GGGTAACTTCACTGAACAAG+AGG 0.588024 7_1:+5812515 Msa1006860:CDS
AAGTGATCATACACTGAGAG+AGG 0.593879 7_1:+5811938 Msa1006860:five_prime_UTR
GATGATTCCAAAGACTCCAA+AGG 0.605819 7_1:-5813604 None:intergenic
AGTGATCATACACTGAGAGA+GGG 0.610005 7_1:+5811939 Msa1006860:five_prime_UTR
AACATGGTCCTGGAAATTGG+AGG 0.614224 7_1:+5812138 Msa1006860:CDS
ACACCTTCTTTGTCACAACA+AGG 0.616257 7_1:-5812059 None:intergenic
CCACCTTGTTGTGACAAAGA+AGG 0.618215 7_1:+5812056 Msa1006860:CDS
ACATGGTCCTGGAAATTGGA+GGG 0.621706 7_1:+5812139 Msa1006860:CDS
ATACTAGCAAAGCCGAAATG+TGG 0.637070 7_1:+5813875 Msa1006860:three_prime_UTR
CAGTAAGATACAAACAAATG+TGG 0.641783 7_1:+5813988 Msa1006860:three_prime_UTR
GTTACTTATATACAAGAACA+TGG 0.665375 7_1:+5812122 Msa1006860:CDS
CTAAGGCCAGGAATCAAAAG+GGG 0.682983 7_1:+5812495 Msa1006860:CDS
CCTTCTTTGTCACAACAAGG+TGG 0.693026 7_1:-5812056 None:intergenic
GCATCTCAAAGAATTCCAAG+AGG 0.704482 7_1:+5813238 Msa1006860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATTACTTAAC+TGG + chr7_1:5812331-5812350 Msa1006860:intron 10.0%
!!! ATTAATTTATTTGATTTTTG+TGG + chr7_1:5812412-5812431 Msa1006860:intron 10.0%
!!! CAAATTATTTATTTGTTTTA+AGG + chr7_1:5812626-5812645 Msa1006860:intron 10.0%
!!! ACTTTTGTAAAATTAAATTT+AGG + chr7_1:5812749-5812768 Msa1006860:intron 10.0%
!! TACAAAAAATTATAGAAATA+GGG - chr7_1:5812876-5812895 None:intergenic 10.0%
!! ATACAAAAAATTATAGAAAT+AGG - chr7_1:5812877-5812896 None:intergenic 10.0%
!! AAAAAAACTACTAAAAAAAT+TGG - chr7_1:5813018-5813037 None:intergenic 10.0%
!!! ATTTTTTTAGTAGTTTTTTT+TGG + chr7_1:5813018-5813037 Msa1006860:intron 10.0%
!!! AAATTATAAGATAATTTTTG+TGG - chr7_1:5813331-5813350 None:intergenic 10.0%
!!! TTTTATTTTTATTACTTAAC+TGG + chr7_1:5812331-5812350 Msa1006860:intron 10.0%
!!! ATTAATTTATTTGATTTTTG+TGG + chr7_1:5812412-5812431 Msa1006860:intron 10.0%
!!! CAAATTATTTATTTGTTTTA+AGG + chr7_1:5812626-5812645 Msa1006860:intron 10.0%
!!! ACTTTTGTAAAATTAAATTT+AGG + chr7_1:5812749-5812768 Msa1006860:intron 10.0%
!! TACAAAAAATTATAGAAATA+GGG - chr7_1:5812876-5812895 None:intergenic 10.0%
!! ATACAAAAAATTATAGAAAT+AGG - chr7_1:5812877-5812896 None:intergenic 10.0%
!! AAAAAAACTACTAAAAAAAT+TGG - chr7_1:5813018-5813037 None:intergenic 10.0%
!!! ATTTTTTTAGTAGTTTTTTT+TGG + chr7_1:5813018-5813037 Msa1006860:intron 10.0%
!!! AAATTATAAGATAATTTTTG+TGG - chr7_1:5813331-5813350 None:intergenic 10.0%
!! TTTAAATATCCCTAAAAAAA+AGG + chr7_1:5812918-5812937 Msa1006860:intron 15.0%
!! ATAATGACATAAAAAACTAT+TGG + chr7_1:5813131-5813150 Msa1006860:CDS 15.0%
!!! TTGTTTTATATGATTTCTAT+AGG + chr7_1:5814125-5814144 Msa1006860:three_prime_UTR 15.0%
!! TTTAAATATCCCTAAAAAAA+AGG + chr7_1:5812918-5812937 Msa1006860:intron 15.0%
!! ATAATGACATAAAAAACTAT+TGG + chr7_1:5813131-5813150 Msa1006860:CDS 15.0%
!!! TTGTTTTATATGATTTCTAT+AGG + chr7_1:5814125-5814144 Msa1006860:three_prime_UTR 15.0%
!! GTATATCATAGATCATTAAT+AGG + chr7_1:5812258-5812277 Msa1006860:intron 20.0%
!! TGATCATGAATACATTATTT+AGG + chr7_1:5812308-5812327 Msa1006860:intron 20.0%
!!! TTTTTGTGGATTAATTTTTC+AGG + chr7_1:5812426-5812445 Msa1006860:intron 20.0%
!!! TTTTGTGGATTAATTTTTCA+GGG + chr7_1:5812427-5812446 Msa1006860:intron 20.0%
!!! ATTAAATTTAGGACATAAGT+TGG + chr7_1:5812760-5812779 Msa1006860:intron 20.0%
!! ATCTTTATGGAATTAAAAAC+AGG - chr7_1:5812796-5812815 None:intergenic 20.0%
!! TCATAACTAGTATATCTTTA+TGG - chr7_1:5812809-5812828 None:intergenic 20.0%
!! TTATGAAAGAATATAAGTGT+TGG + chr7_1:5812823-5812842 Msa1006860:intron 20.0%
!!! TTAGCAAATCCTTTTTTTTA+GGG - chr7_1:5812930-5812949 None:intergenic 20.0%
!!! ATTAGCAAATCCTTTTTTTT+AGG - chr7_1:5812931-5812950 None:intergenic 20.0%
!! AAAATGAGTTACTATTTGTA+GGG - chr7_1:5813366-5813385 None:intergenic 20.0%
!! TTATATGATTTCTATAGGAA+AGG + chr7_1:5814130-5814149 Msa1006860:three_prime_UTR 20.0%
!! GTATATCATAGATCATTAAT+AGG + chr7_1:5812258-5812277 Msa1006860:intron 20.0%
!! TGATCATGAATACATTATTT+AGG + chr7_1:5812308-5812327 Msa1006860:intron 20.0%
!!! TTTTTGTGGATTAATTTTTC+AGG + chr7_1:5812426-5812445 Msa1006860:intron 20.0%
!!! TTTTGTGGATTAATTTTTCA+GGG + chr7_1:5812427-5812446 Msa1006860:intron 20.0%
!!! ATTAAATTTAGGACATAAGT+TGG + chr7_1:5812760-5812779 Msa1006860:intron 20.0%
!! ATCTTTATGGAATTAAAAAC+AGG - chr7_1:5812796-5812815 None:intergenic 20.0%
!! TCATAACTAGTATATCTTTA+TGG - chr7_1:5812809-5812828 None:intergenic 20.0%
!! TTATGAAAGAATATAAGTGT+TGG + chr7_1:5812823-5812842 Msa1006860:intron 20.0%
!!! TTAGCAAATCCTTTTTTTTA+GGG - chr7_1:5812930-5812949 None:intergenic 20.0%
!!! ATTAGCAAATCCTTTTTTTT+AGG - chr7_1:5812931-5812950 None:intergenic 20.0%
!! AAAATGAGTTACTATTTGTA+GGG - chr7_1:5813366-5813385 None:intergenic 20.0%
!! TTATATGATTTCTATAGGAA+AGG + chr7_1:5814130-5814149 Msa1006860:three_prime_UTR 20.0%
! AAGGTCTATAGAATAGAAAT+TGG + chr7_1:5811973-5811992 Msa1006860:five_prime_UTR 25.0%
! AAAAGAGAAACAAAGAAACA+TGG + chr7_1:5812028-5812047 Msa1006860:exon 25.0%
! AAAGAGAAACAAAGAAACAT+GGG + chr7_1:5812029-5812048 Msa1006860:exon 25.0%
! GTTACTTATATACAAGAACA+TGG + chr7_1:5812122-5812141 Msa1006860:CDS 25.0%
!!! TTCAAGATCTTTTAGGAAAT+AGG + chr7_1:5812556-5812575 Msa1006860:CDS 25.0%
! AGTAGCAAATTATGAAGAAA+AGG - chr7_1:5812586-5812605 None:intergenic 25.0%
!!! AGCATTTGATTTCGTTTTTT+AGG + chr7_1:5812720-5812739 Msa1006860:intron 25.0%
! TAGGGACACAAATTAAAAAT+AGG - chr7_1:5812858-5812877 None:intergenic 25.0%
! TATATTAGACTTGTCCTAAA+TGG + chr7_1:5812894-5812913 Msa1006860:intron 25.0%
! AGGGATATTTAAATCCATTT+AGG - chr7_1:5812911-5812930 None:intergenic 25.0%
! AACATTTATGATGTAACAGA+TGG + chr7_1:5813074-5813093 Msa1006860:intron 25.0%
! ACATTTATGATGTAACAGAT+GGG + chr7_1:5813075-5813094 Msa1006860:intron 25.0%
! ACTTCAAACAGATATTCAAA+TGG + chr7_1:5813276-5813295 Msa1006860:CDS 25.0%
! GAAAATGAGTTACTATTTGT+AGG - chr7_1:5813367-5813386 None:intergenic 25.0%
! GAAAAATCCAATCAAATCAT+CGG + chr7_1:5813465-5813484 Msa1006860:CDS 25.0%
! GAAACATTTGAATCTTTGTT+TGG + chr7_1:5813574-5813593 Msa1006860:CDS 25.0%
!!! TTAGGTTTTATCTGCATTTT+CGG + chr7_1:5813814-5813833 Msa1006860:three_prime_UTR 25.0%
!! TGGAACACAATTTAAAGTTA+GGG + chr7_1:5814064-5814083 Msa1006860:three_prime_UTR 25.0%
!!! TTCAAGTTCTGAAATATATG+TGG + chr7_1:5814087-5814106 Msa1006860:three_prime_UTR 25.0%
! AAGGTCTATAGAATAGAAAT+TGG + chr7_1:5811973-5811992 Msa1006860:five_prime_UTR 25.0%
! AAAAGAGAAACAAAGAAACA+TGG + chr7_1:5812028-5812047 Msa1006860:exon 25.0%
! AAAGAGAAACAAAGAAACAT+GGG + chr7_1:5812029-5812048 Msa1006860:exon 25.0%
! GTTACTTATATACAAGAACA+TGG + chr7_1:5812122-5812141 Msa1006860:CDS 25.0%
!!! TTCAAGATCTTTTAGGAAAT+AGG + chr7_1:5812556-5812575 Msa1006860:CDS 25.0%
! AGTAGCAAATTATGAAGAAA+AGG - chr7_1:5812586-5812605 None:intergenic 25.0%
!!! AGCATTTGATTTCGTTTTTT+AGG + chr7_1:5812720-5812739 Msa1006860:intron 25.0%
! TAGGGACACAAATTAAAAAT+AGG - chr7_1:5812858-5812877 None:intergenic 25.0%
! TATATTAGACTTGTCCTAAA+TGG + chr7_1:5812894-5812913 Msa1006860:intron 25.0%
! AGGGATATTTAAATCCATTT+AGG - chr7_1:5812911-5812930 None:intergenic 25.0%
! AACATTTATGATGTAACAGA+TGG + chr7_1:5813074-5813093 Msa1006860:intron 25.0%
! ACATTTATGATGTAACAGAT+GGG + chr7_1:5813075-5813094 Msa1006860:intron 25.0%
! ACTTCAAACAGATATTCAAA+TGG + chr7_1:5813276-5813295 Msa1006860:CDS 25.0%
! GAAAATGAGTTACTATTTGT+AGG - chr7_1:5813367-5813386 None:intergenic 25.0%
! GAAAAATCCAATCAAATCAT+CGG + chr7_1:5813465-5813484 Msa1006860:CDS 25.0%
! GAAACATTTGAATCTTTGTT+TGG + chr7_1:5813574-5813593 Msa1006860:CDS 25.0%
!!! TTAGGTTTTATCTGCATTTT+CGG + chr7_1:5813814-5813833 Msa1006860:three_prime_UTR 25.0%
!! TGGAACACAATTTAAAGTTA+GGG + chr7_1:5814064-5814083 Msa1006860:three_prime_UTR 25.0%
!!! TTCAAGTTCTGAAATATATG+TGG + chr7_1:5814087-5814106 Msa1006860:three_prime_UTR 25.0%
GTCTATAGAATAGAAATTGG+TGG + chr7_1:5811976-5811995 Msa1006860:five_prime_UTR 30.0%
!! GACAAAGAAGGTGTTAAAAA+AGG + chr7_1:5812068-5812087 Msa1006860:CDS 30.0%
ACAAGTATGATATCTTCTTC+AGG - chr7_1:5812104-5812123 None:intergenic 30.0%
TATGAACTATTAACCTGTCT+TGG - chr7_1:5812174-5812193 None:intergenic 30.0%
!! TTAGATGGACTAATTACCTA+AGG + chr7_1:5812478-5812497 Msa1006860:CDS 30.0%
! ATCCATCTTCAAGATCTTTT+AGG + chr7_1:5812549-5812568 Msa1006860:CDS 30.0%
TTCCTAAAAGATCTTGAAGA+TGG - chr7_1:5812554-5812573 None:intergenic 30.0%
TTATGATTCACATGTCTAAC+TGG + chr7_1:5813049-5813068 Msa1006860:intron 30.0%
ATGTCATTATCTGTTCTTTG+TGG - chr7_1:5813121-5813140 None:intergenic 30.0%
!!! TGCTTCATTAAGTGCTTTTT+TGG - chr7_1:5813302-5813321 None:intergenic 30.0%
AACATAGCTCGTTTACTAAA+AGG + chr7_1:5813436-5813455 Msa1006860:CDS 30.0%
CATTTCTCAAGCAAAGAAAA+GGG - chr7_1:5813718-5813737 None:intergenic 30.0%
!! AGTTGTCCTGAAAAAGTATT+AGG + chr7_1:5813754-5813773 Msa1006860:CDS 30.0%
TTTCGGTTTAGATAAAGCTA+CGG + chr7_1:5813831-5813850 Msa1006860:three_prime_UTR 30.0%
! ATGATTTTAAATTGCAGTCG+CGG + chr7_1:5813940-5813959 Msa1006860:three_prime_UTR 30.0%
CAGTAAGATACAAACAAATG+TGG + chr7_1:5813988-5814007 Msa1006860:three_prime_UTR 30.0%
! GTGGAACACAATTTAAAGTT+AGG + chr7_1:5814063-5814082 Msa1006860:three_prime_UTR 30.0%
CACACTATTACATACCATAA+TGG + chr7_1:5814225-5814244 Msa1006860:three_prime_UTR 30.0%
GTCTATAGAATAGAAATTGG+TGG + chr7_1:5811976-5811995 Msa1006860:five_prime_UTR 30.0%
!! GACAAAGAAGGTGTTAAAAA+AGG + chr7_1:5812068-5812087 Msa1006860:CDS 30.0%
ACAAGTATGATATCTTCTTC+AGG - chr7_1:5812104-5812123 None:intergenic 30.0%
TATGAACTATTAACCTGTCT+TGG - chr7_1:5812174-5812193 None:intergenic 30.0%
!! TTAGATGGACTAATTACCTA+AGG + chr7_1:5812478-5812497 Msa1006860:CDS 30.0%
! ATCCATCTTCAAGATCTTTT+AGG + chr7_1:5812549-5812568 Msa1006860:CDS 30.0%
TTCCTAAAAGATCTTGAAGA+TGG - chr7_1:5812554-5812573 None:intergenic 30.0%
TTATGATTCACATGTCTAAC+TGG + chr7_1:5813049-5813068 Msa1006860:intron 30.0%
ATGTCATTATCTGTTCTTTG+TGG - chr7_1:5813121-5813140 None:intergenic 30.0%
!!! TGCTTCATTAAGTGCTTTTT+TGG - chr7_1:5813302-5813321 None:intergenic 30.0%
AACATAGCTCGTTTACTAAA+AGG + chr7_1:5813436-5813455 Msa1006860:CDS 30.0%
CATTTCTCAAGCAAAGAAAA+GGG - chr7_1:5813718-5813737 None:intergenic 30.0%
!! AGTTGTCCTGAAAAAGTATT+AGG + chr7_1:5813754-5813773 Msa1006860:CDS 30.0%
TTTCGGTTTAGATAAAGCTA+CGG + chr7_1:5813831-5813850 Msa1006860:three_prime_UTR 30.0%
! ATGATTTTAAATTGCAGTCG+CGG + chr7_1:5813940-5813959 Msa1006860:three_prime_UTR 30.0%
CAGTAAGATACAAACAAATG+TGG + chr7_1:5813988-5814007 Msa1006860:three_prime_UTR 30.0%
! GTGGAACACAATTTAAAGTT+AGG + chr7_1:5814063-5814082 Msa1006860:three_prime_UTR 30.0%
CACACTATTACATACCATAA+TGG + chr7_1:5814225-5814244 Msa1006860:three_prime_UTR 30.0%
! AAGGTGTTAAAAAAGGACCA+TGG + chr7_1:5812075-5812094 Msa1006860:CDS 35.0%
TATATACAAGAACATGGTCC+TGG + chr7_1:5812128-5812147 Msa1006860:CDS 35.0%
AACTATTAACCTGTCTTGGT+TGG - chr7_1:5812170-5812189 None:intergenic 35.0%
TAGGAAAATCATGATCCAAG+AGG + chr7_1:5812277-5812296 Msa1006860:intron 35.0%
CATTATCTGTTCTTTGTGGA+AGG - chr7_1:5813117-5813136 None:intergenic 35.0%
AAGCTCAAGAAATCACAAAC+AGG + chr7_1:5813172-5813191 Msa1006860:CDS 35.0%
AAAGAATTCCAAGAGGTCAA+TGG + chr7_1:5813245-5813264 Msa1006860:CDS 35.0%
AAGAATTCCAAGAGGTCAAT+GGG + chr7_1:5813246-5813265 Msa1006860:CDS 35.0%
! TTTTCTTCCACTAAAGAACC+AGG + chr7_1:5813382-5813401 Msa1006860:CDS 35.0%
TAGCTCGTTTACTAAAAGGT+TGG + chr7_1:5813440-5813459 Msa1006860:CDS 35.0%
GTACTAACCGATGATTTGAT+TGG - chr7_1:5813475-5813494 None:intergenic 35.0%
AGCAGAATCAAAGTTGTTGA+AGG - chr7_1:5813521-5813540 None:intergenic 35.0%
TTTGATTCTGCTTCTAGTAG+TGG + chr7_1:5813529-5813548 Msa1006860:CDS 35.0%
!!! TTTGTTTGGTTTTGAGCCTT+TGG + chr7_1:5813588-5813607 Msa1006860:CDS 35.0%
CCATTTCTCAAGCAAAGAAA+AGG - chr7_1:5813719-5813738 None:intergenic 35.0%
! CCTTTTCTTTGCTTGAGAAA+TGG + chr7_1:5813716-5813735 Msa1006860:CDS 35.0%
!!! GCACAACCTAATACTTTTTC+AGG - chr7_1:5813763-5813782 None:intergenic 35.0%
!! GAAAAAGTATTAGGTTGTGC+TGG + chr7_1:5813763-5813782 Msa1006860:CDS 35.0%
!!! CAAGTTTTCTAGACTGGTTT+AGG + chr7_1:5813796-5813815 Msa1006860:exon 35.0%
ACATCATCACAACCACATTT+CGG - chr7_1:5813890-5813909 None:intergenic 35.0%
!! ATGTTGTTGCTTGGTTCTAA+TGG + chr7_1:5813906-5813925 Msa1006860:three_prime_UTR 35.0%
TGTATCTTACTGCAACGTAA+AGG - chr7_1:5813980-5813999 None:intergenic 35.0%
! CACAATTGCAACGATTTTAG+AGG - chr7_1:5814046-5814065 None:intergenic 35.0%
!! CTCTAAAATCGTTGCAATTG+TGG + chr7_1:5814044-5814063 Msa1006860:three_prime_UTR 35.0%
CAATCTTTGATGTATTGCCT+TGG + chr7_1:5814162-5814181 Msa1006860:three_prime_UTR 35.0%
! CTTGTTTCTCTTTAGTACCA+AGG - chr7_1:5814182-5814201 None:intergenic 35.0%
! GTCAAGCAAGTTTTCCATTA+TGG - chr7_1:5814242-5814261 None:intergenic 35.0%
! AAGGTGTTAAAAAAGGACCA+TGG + chr7_1:5812075-5812094 Msa1006860:CDS 35.0%
TATATACAAGAACATGGTCC+TGG + chr7_1:5812128-5812147 Msa1006860:CDS 35.0%
AACTATTAACCTGTCTTGGT+TGG - chr7_1:5812170-5812189 None:intergenic 35.0%
TAGGAAAATCATGATCCAAG+AGG + chr7_1:5812277-5812296 Msa1006860:intron 35.0%
CATTATCTGTTCTTTGTGGA+AGG - chr7_1:5813117-5813136 None:intergenic 35.0%
AAGCTCAAGAAATCACAAAC+AGG + chr7_1:5813172-5813191 Msa1006860:CDS 35.0%
AAAGAATTCCAAGAGGTCAA+TGG + chr7_1:5813245-5813264 Msa1006860:CDS 35.0%
AAGAATTCCAAGAGGTCAAT+GGG + chr7_1:5813246-5813265 Msa1006860:CDS 35.0%
! TTTTCTTCCACTAAAGAACC+AGG + chr7_1:5813382-5813401 Msa1006860:CDS 35.0%
TAGCTCGTTTACTAAAAGGT+TGG + chr7_1:5813440-5813459 Msa1006860:CDS 35.0%
GTACTAACCGATGATTTGAT+TGG - chr7_1:5813475-5813494 None:intergenic 35.0%
AGCAGAATCAAAGTTGTTGA+AGG - chr7_1:5813521-5813540 None:intergenic 35.0%
TTTGATTCTGCTTCTAGTAG+TGG + chr7_1:5813529-5813548 Msa1006860:CDS 35.0%
!!! TTTGTTTGGTTTTGAGCCTT+TGG + chr7_1:5813588-5813607 Msa1006860:CDS 35.0%
CCATTTCTCAAGCAAAGAAA+AGG - chr7_1:5813719-5813738 None:intergenic 35.0%
! CCTTTTCTTTGCTTGAGAAA+TGG + chr7_1:5813716-5813735 Msa1006860:CDS 35.0%
!!! GCACAACCTAATACTTTTTC+AGG - chr7_1:5813763-5813782 None:intergenic 35.0%
!! GAAAAAGTATTAGGTTGTGC+TGG + chr7_1:5813763-5813782 Msa1006860:CDS 35.0%
!!! CAAGTTTTCTAGACTGGTTT+AGG + chr7_1:5813796-5813815 Msa1006860:exon 35.0%
ACATCATCACAACCACATTT+CGG - chr7_1:5813890-5813909 None:intergenic 35.0%
!! ATGTTGTTGCTTGGTTCTAA+TGG + chr7_1:5813906-5813925 Msa1006860:three_prime_UTR 35.0%
TGTATCTTACTGCAACGTAA+AGG - chr7_1:5813980-5813999 None:intergenic 35.0%
! CACAATTGCAACGATTTTAG+AGG - chr7_1:5814046-5814065 None:intergenic 35.0%
!! CTCTAAAATCGTTGCAATTG+TGG + chr7_1:5814044-5814063 Msa1006860:three_prime_UTR 35.0%
CAATCTTTGATGTATTGCCT+TGG + chr7_1:5814162-5814181 Msa1006860:three_prime_UTR 35.0%
! CTTGTTTCTCTTTAGTACCA+AGG - chr7_1:5814182-5814201 None:intergenic 35.0%
! GTCAAGCAAGTTTTCCATTA+TGG - chr7_1:5814242-5814261 None:intergenic 35.0%
AAGTGATCATACACTGAGAG+AGG + chr7_1:5811938-5811957 Msa1006860:five_prime_UTR 40.0%
AGTGATCATACACTGAGAGA+GGG + chr7_1:5811939-5811958 Msa1006860:five_prime_UTR 40.0%
AGAGAGGGAGAAGAAGAAAA+AGG + chr7_1:5811954-5811973 Msa1006860:five_prime_UTR 40.0%
ACACCTTCTTTGTCACAACA+AGG - chr7_1:5812062-5812081 None:intergenic 40.0%
ATATCTTCTTCAGGAGTCCA+TGG - chr7_1:5812095-5812114 None:intergenic 40.0%
AAGAACATGGTCCTGGAAAT+TGG + chr7_1:5812135-5812154 Msa1006860:CDS 40.0%
ATGATCAACAACAGTCCTCT+TGG - chr7_1:5812295-5812314 None:intergenic 40.0%
GCAAAAGTTGCAGACTTAGA+TGG + chr7_1:5812463-5812482 Msa1006860:CDS 40.0%
!! AAGTTACCCCTTTTGATTCC+TGG - chr7_1:5812504-5812523 None:intergenic 40.0%
GCATCTCAAAGAATTCCAAG+AGG + chr7_1:5813238-5813257 Msa1006860:CDS 40.0%
! AGATTGACCTGGTTCTTTAG+TGG - chr7_1:5813392-5813411 None:intergenic 40.0%
GCATAGCAAAAAGATTGACC+TGG - chr7_1:5813403-5813422 None:intergenic 40.0%
! TGCTTCTAGTAGTGGAACAA+AGG + chr7_1:5813537-5813556 Msa1006860:CDS 40.0%
! GCTTCTAGTAGTGGAACAAA+GGG + chr7_1:5813538-5813557 Msa1006860:CDS 40.0%
!!! TTTTGAGCCTTTGGAGTCTT+TGG + chr7_1:5813597-5813616 Msa1006860:CDS 40.0%
GATGATTCCAAAGACTCCAA+AGG - chr7_1:5813607-5813626 None:intergenic 40.0%
TCTTGTAAAACAGTTGCGTC+TGG - chr7_1:5813661-5813680 None:intergenic 40.0%
GATGAAAGTAAGCCTGATGT+TGG + chr7_1:5813679-5813698 Msa1006860:CDS 40.0%
! AAGTAAGCCTGATGTTGGTT+CGG + chr7_1:5813684-5813703 Msa1006860:CDS 40.0%
ATTGTTTCCGAACCAACATC+AGG - chr7_1:5813694-5813713 None:intergenic 40.0%
! CATGCTCAAGTTTTCTAGAC+TGG + chr7_1:5813790-5813809 Msa1006860:exon 40.0%
ATACTAGCAAAGCCGAAATG+TGG + chr7_1:5813875-5813894 Msa1006860:three_prime_UTR 40.0%
! GTTGTGATGATGTTGTTGCT+TGG + chr7_1:5813897-5813916 Msa1006860:three_prime_UTR 40.0%
AAGTGATCATACACTGAGAG+AGG + chr7_1:5811938-5811957 Msa1006860:five_prime_UTR 40.0%
AGTGATCATACACTGAGAGA+GGG + chr7_1:5811939-5811958 Msa1006860:five_prime_UTR 40.0%
AGAGAGGGAGAAGAAGAAAA+AGG + chr7_1:5811954-5811973 Msa1006860:five_prime_UTR 40.0%
ACACCTTCTTTGTCACAACA+AGG - chr7_1:5812062-5812081 None:intergenic 40.0%
ATATCTTCTTCAGGAGTCCA+TGG - chr7_1:5812095-5812114 None:intergenic 40.0%
AAGAACATGGTCCTGGAAAT+TGG + chr7_1:5812135-5812154 Msa1006860:CDS 40.0%
ATGATCAACAACAGTCCTCT+TGG - chr7_1:5812295-5812314 None:intergenic 40.0%
GCAAAAGTTGCAGACTTAGA+TGG + chr7_1:5812463-5812482 Msa1006860:CDS 40.0%
!! AAGTTACCCCTTTTGATTCC+TGG - chr7_1:5812504-5812523 None:intergenic 40.0%
GCATCTCAAAGAATTCCAAG+AGG + chr7_1:5813238-5813257 Msa1006860:CDS 40.0%
! AGATTGACCTGGTTCTTTAG+TGG - chr7_1:5813392-5813411 None:intergenic 40.0%
GCATAGCAAAAAGATTGACC+TGG - chr7_1:5813403-5813422 None:intergenic 40.0%
! TGCTTCTAGTAGTGGAACAA+AGG + chr7_1:5813537-5813556 Msa1006860:CDS 40.0%
! GCTTCTAGTAGTGGAACAAA+GGG + chr7_1:5813538-5813557 Msa1006860:CDS 40.0%
!!! TTTTGAGCCTTTGGAGTCTT+TGG + chr7_1:5813597-5813616 Msa1006860:CDS 40.0%
GATGATTCCAAAGACTCCAA+AGG - chr7_1:5813607-5813626 None:intergenic 40.0%
TCTTGTAAAACAGTTGCGTC+TGG - chr7_1:5813661-5813680 None:intergenic 40.0%
GATGAAAGTAAGCCTGATGT+TGG + chr7_1:5813679-5813698 Msa1006860:CDS 40.0%
! AAGTAAGCCTGATGTTGGTT+CGG + chr7_1:5813684-5813703 Msa1006860:CDS 40.0%
ATTGTTTCCGAACCAACATC+AGG - chr7_1:5813694-5813713 None:intergenic 40.0%
! CATGCTCAAGTTTTCTAGAC+TGG + chr7_1:5813790-5813809 Msa1006860:exon 40.0%
ATACTAGCAAAGCCGAAATG+TGG + chr7_1:5813875-5813894 Msa1006860:three_prime_UTR 40.0%
! GTTGTGATGATGTTGTTGCT+TGG + chr7_1:5813897-5813916 Msa1006860:three_prime_UTR 40.0%
CCTTCTTTGTCACAACAAGG+TGG - chr7_1:5812059-5812078 None:intergenic 45.0%
! CCACCTTGTTGTGACAAAGA+AGG + chr7_1:5812056-5812075 Msa1006860:CDS 45.0%
AACATGGTCCTGGAAATTGG+AGG + chr7_1:5812138-5812157 Msa1006860:CDS 45.0%
ACATGGTCCTGGAAATTGGA+GGG + chr7_1:5812139-5812158 Msa1006860:CDS 45.0%
TGGACTAATTACCTAAGGCC+AGG + chr7_1:5812483-5812502 Msa1006860:CDS 45.0%
ACCTAAGGCCAGGAATCAAA+AGG + chr7_1:5812493-5812512 Msa1006860:CDS 45.0%
CCTAAGGCCAGGAATCAAAA+GGG + chr7_1:5812494-5812513 Msa1006860:CDS 45.0%
CTAAGGCCAGGAATCAAAAG+GGG + chr7_1:5812495-5812514 Msa1006860:CDS 45.0%
GGGTAACTTCACTGAACAAG+AGG + chr7_1:5812515-5812534 Msa1006860:CDS 45.0%
CTTCTTTCCCATTGACCTCT+TGG - chr7_1:5813256-5813275 None:intergenic 45.0%
CCTTCTTTGTCACAACAAGG+TGG - chr7_1:5812059-5812078 None:intergenic 45.0%
! CCACCTTGTTGTGACAAAGA+AGG + chr7_1:5812056-5812075 Msa1006860:CDS 45.0%
AACATGGTCCTGGAAATTGG+AGG + chr7_1:5812138-5812157 Msa1006860:CDS 45.0%
ACATGGTCCTGGAAATTGGA+GGG + chr7_1:5812139-5812158 Msa1006860:CDS 45.0%
TGGACTAATTACCTAAGGCC+AGG + chr7_1:5812483-5812502 Msa1006860:CDS 45.0%
ACCTAAGGCCAGGAATCAAA+AGG + chr7_1:5812493-5812512 Msa1006860:CDS 45.0%
CCTAAGGCCAGGAATCAAAA+GGG + chr7_1:5812494-5812513 Msa1006860:CDS 45.0%
CTAAGGCCAGGAATCAAAAG+GGG + chr7_1:5812495-5812514 Msa1006860:CDS 45.0%
GGGTAACTTCACTGAACAAG+AGG + chr7_1:5812515-5812534 Msa1006860:CDS 45.0%
CTTCTTTCCCATTGACCTCT+TGG - chr7_1:5813256-5813275 None:intergenic 45.0%
!! TTCATTAAAATTATATTTAT+TGG + chr7_1:5812216-5812235 Msa1006860:intron 5.0%
!! TTCATTAAAATTATATTTAT+TGG + chr7_1:5812216-5812235 Msa1006860:intron 5.0%
!! CCCTTTTGATTCCTGGCCTT+AGG - chr7_1:5812497-5812516 None:intergenic 50.0%
!! CCCTTTTGATTCCTGGCCTT+AGG - chr7_1:5812497-5812516 None:intergenic 50.0%
GGAACAGCCCTCCAATTTCC+AGG - chr7_1:5812149-5812168 None:intergenic 55.0%
AGGGCTGTTCCAACCAAGAC+AGG + chr7_1:5812158-5812177 Msa1006860:CDS 55.0%
GGAACAGCCCTCCAATTTCC+AGG - chr7_1:5812149-5812168 None:intergenic 55.0%
AGGGCTGTTCCAACCAAGAC+AGG + chr7_1:5812158-5812177 Msa1006860:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 5811897 5814278 5811897 ID=Msa1006860;Name=Msa1006860
chr7_1 mRNA 5811897 5814278 5811897 ID=Msa1006860-mRNA-1;Parent=Msa1006860;Name=Msa1006860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|3|471|325
chr7_1 exon 5811897 5812179 5811897 ID=Msa1006860-mRNA-1:exon:1841;Parent=Msa1006860-mRNA-1
chr7_1 exon 5812448 5812577 5812448 ID=Msa1006860-mRNA-1:exon:1842;Parent=Msa1006860-mRNA-1
chr7_1 exon 5813093 5814278 5813093 ID=Msa1006860-mRNA-1:exon:1843;Parent=Msa1006860-mRNA-1
chr7_1 five_prime_UTR 5811897 5812046 5811897 ID=Msa1006860-mRNA-1:five_prime_utr;Parent=Msa1006860-mRNA-1
chr7_1 CDS 5812047 5812179 5812047 ID=Msa1006860-mRNA-1:cds;Parent=Msa1006860-mRNA-1
chr7_1 CDS 5812448 5812577 5812448 ID=Msa1006860-mRNA-1:cds;Parent=Msa1006860-mRNA-1
chr7_1 CDS 5813093 5813807 5813093 ID=Msa1006860-mRNA-1:cds;Parent=Msa1006860-mRNA-1
chr7_1 three_prime_UTR 5813808 5814278 5813808 ID=Msa1006860-mRNA-1:three_prime_utr;Parent=Msa1006860-mRNA-1
Gene Sequence

>Msa1006860

ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTTAAAAAAGGACCATGGACTCCTGAAGAAGATATCATACTTGTTACTTATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAAAGTTGCAGACTTAGATGGACTAATTACCTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAGATAATGACATAAAAAACTATTGGAATACTCATTTGAAAAAGAAGCTCAAGAAATCACAAACAGGTAATAATGCTGAATGCATTAATTTTGAAGAAGAAAAATTTTCAGCATCTCAAAGAATTCCAAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCAAATGGCCAAAAAAGCACTTAATGAAGCACTTTCACCACAAAAATTATCTTATAATTTTTCTACTTCAAACCCTACAAATAGTAACTCATTTTCTTCCACTAAAGAACCAGGTCAATCTTTTTGCTATGCTTCAAGTGCAGATAACATAGCTCGTTTACTAAAAGGTTGGATGAAAAATCCAATCAAATCATCGGTTAGTACTAATTCTGCTGTGACACAAAATTCCTTCAACAACTTTGATTCTGCTTCTAGTAGTGGAACAAAGGGTGAAATATTGTCTGAAACATTTGAATCTTTGTTTGGTTTTGAGCCTTTGGAGTCTTTGGAATCATCAAATTCTGAATTCTCTCGTCAATCTTTGTCACCAGACGCAACTGTTTTACAAGATGAAAGTAAGCCTGATGTTGGTTCGGAAACAATGCCCTTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCAAGTTGTCCTGAAAAAGTATTAGGTTGTGCTGGTGATCATGCTCAAGTTTTCTAG
Protein sequence

>Msa1006860

MGRPPCCDKEGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKSQTGNNAECINFEEEKFSASQRIPRGQWERRLQTDIQMAKKALNEALSPQKLSYNFSTSNPTNSNSFSSTKEPGQSFCYASSADNIARLLKGWMKNPIKSSVSTNSAVTQNSFNNFDSASSSGTKGEILSETFESLFGFEPLESLESSNSEFSRQSLSPDATVLQDESKPDVGSETMPFSLLEKWLLDEASCPEKVLGCAGDHAQVF*