AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003576

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003576.t1 MTR_4g072220 92.473 93 7 0 1 93 1 93 4.00e-60 178
MS.gene003576.t1 MTR_4g072300 86.813 91 12 0 1 91 1 91 1.39e-56 169
MS.gene003576.t1 MTR_4g072890 86.813 91 12 0 1 91 1 91 4.69e-56 168
MS.gene003576.t1 MTR_4g072260 84.946 93 14 0 1 93 1 93 6.56e-56 167
MS.gene003576.t1 MTR_4g072240 85.714 91 13 0 1 91 1 91 1.68e-55 166
MS.gene003576.t1 MTR_4g072870 81.319 91 17 0 1 91 1 91 1.50e-51 157
MS.gene003576.t1 MTR_4g072280 84.000 75 12 0 1 75 1 75 3.54e-42 132
MS.gene003576.t1 MTR_4g072310 63.441 93 34 0 1 93 1 93 9.07e-42 132
MS.gene003576.t1 MTR_4g072530 65.934 91 30 1 1 91 1 90 1.91e-41 131
MS.gene003576.t1 MTR_3g110038 68.817 93 28 1 1 93 1 92 3.28e-41 130
MS.gene003576.t1 MTR_4g072500 65.591 93 31 1 1 93 1 92 3.83e-41 130
MS.gene003576.t1 MTR_4g072370 65.934 91 28 1 1 91 1 88 6.45e-41 130
MS.gene003576.t1 MTR_3g084240 66.667 93 30 1 1 93 1 92 8.07e-41 129
MS.gene003576.t1 MTR_3g084150 65.591 93 31 1 1 93 1 92 1.51e-40 129
MS.gene003576.t1 MTR_4g072640 65.217 92 31 1 1 92 1 91 2.12e-40 129
MS.gene003576.t1 MTR_3g084170 66.667 93 30 1 1 93 1 92 4.00e-40 128
MS.gene003576.t1 MTR_4g072330 65.934 91 28 1 1 91 1 88 5.13e-40 127
MS.gene003576.t1 MTR_4g072570 64.516 93 32 1 1 93 1 92 5.62e-40 127
MS.gene003576.t1 MTR_3g110042 67.778 90 28 1 1 90 1 89 6.93e-40 127
MS.gene003576.t1 MTR_4g072830 67.033 91 27 1 1 91 1 88 7.61e-40 127
MS.gene003576.t1 MTR_3g084180 64.516 93 32 1 1 93 1 92 9.41e-40 127
MS.gene003576.t1 MTR_4g072580 65.934 91 25 1 1 91 1 85 9.58e-40 127
MS.gene003576.t1 MTR_4g072880 61.290 93 36 0 1 93 1 93 1.83e-39 126
MS.gene003576.t1 MTR_4g072230 62.366 93 33 1 1 93 1 91 2.80e-39 125
MS.gene003576.t1 MTR_3g110032 63.441 93 34 0 1 93 1 93 3.00e-39 125
MS.gene003576.t1 MTR_4g072250 64.835 91 31 1 1 91 1 90 3.14e-39 125
MS.gene003576.t1 MTR_3g117630 63.333 90 33 0 4 93 3 92 3.71e-39 125
MS.gene003576.t1 MTR_8g461410 63.441 93 33 1 1 93 1 92 4.28e-39 125
MS.gene003576.t1 MTR_3g084250 66.667 93 30 1 1 93 1 92 7.40e-39 124
MS.gene003576.t1 MTR_4g050700 63.441 93 34 0 1 93 1 93 7.70e-39 124
MS.gene003576.t1 MTR_2g012410 63.441 93 34 0 1 93 1 93 7.70e-39 124
MS.gene003576.t1 MTR_3g084220 64.516 93 32 1 1 93 1 92 1.63e-38 124
MS.gene003576.t1 MTR_4g072630 65.934 91 26 1 1 91 1 86 4.62e-38 122
MS.gene003576.t1 MTR_4g072600 64.835 91 26 1 1 91 1 85 6.39e-38 122
MS.gene003576.t1 MTR_4g072850 65.957 94 31 1 1 93 1 94 9.99e-38 122
MS.gene003576.t1 MTR_4g072740 64.835 91 26 1 1 91 1 85 1.09e-37 121
MS.gene003576.t1 MTR_3g084260 62.637 91 34 0 1 91 1 91 1.32e-37 121
MS.gene003576.t1 MTR_4g072480 61.290 93 35 1 1 93 1 92 2.22e-37 121
MS.gene003576.t1 MTR_4g072860 60.215 93 37 0 1 93 1 93 5.67e-37 120
MS.gene003576.t1 MTR_4g072820 65.556 90 25 1 1 90 1 84 9.43e-37 119
MS.gene003576.t1 MTR_4g072270 59.140 93 38 0 1 93 1 93 9.70e-37 119
MS.gene003576.t1 MTR_4g072730 59.341 91 36 1 1 91 1 90 1.05e-36 119
MS.gene003576.t1 MTR_4g072490 62.637 91 28 1 1 91 1 85 1.23e-36 119
MS.gene003576.t1 MTR_4g072620 58.065 93 38 1 1 93 1 92 4.42e-36 117
MS.gene003576.t1 MTR_4g072610 61.538 91 28 1 1 91 1 84 4.94e-36 117
MS.gene003576.t1 MTR_4g072680 59.140 93 37 1 1 93 1 92 8.07e-36 117
MS.gene003576.t1 MTR_4g072470 61.538 91 29 1 1 91 1 85 1.30e-35 116
MS.gene003576.t1 MTR_8g461420 67.742 93 29 1 1 93 1 92 1.72e-35 116
MS.gene003576.t1 MTR_3g084190 68.817 93 28 1 1 93 1 92 1.74e-35 116
MS.gene003576.t1 MTR_3g084210 67.742 93 29 1 1 93 1 92 4.09e-35 115
MS.gene003576.t1 MTR_4g072650 61.538 91 28 1 1 91 1 84 8.36e-35 114
MS.gene003576.t1 MTR_4g072540 61.538 91 30 1 1 91 1 86 8.73e-35 114
MS.gene003576.t1 MTR_4g072940 70.833 72 21 0 22 93 53 124 8.75e-35 115
MS.gene003576.t1 MTR_3g084230 66.667 93 30 1 1 93 1 92 9.00e-35 114
MS.gene003576.t1 MTR_3g084160 66.667 93 30 1 1 93 1 92 1.05e-34 114
MS.gene003576.t1 MTR_4g072460 58.065 93 38 1 1 93 1 92 1.20e-34 114
MS.gene003576.t1 MTR_4g072465 60.440 91 31 1 1 91 1 86 1.70e-34 113
MS.gene003576.t1 MTR_4g072510 61.538 91 30 1 1 91 1 86 4.52e-34 112
MS.gene003576.t1 MTR_4g072670 60.440 91 31 1 1 91 1 86 4.99e-34 112
MS.gene003576.t1 MTR_3g110045 72.222 72 20 0 22 93 80 151 5.49e-34 114
MS.gene003576.t1 MTR_4g072660 58.065 93 33 1 1 93 1 87 8.23e-34 112
MS.gene003576.t1 MTR_4g072720 59.341 91 32 1 1 91 1 86 5.27e-33 109
MS.gene003576.t1 MTR_5g008350 65.000 80 22 1 1 80 1 74 4.08e-32 107
MS.gene003576.t1 MTR_4g072590 64.634 82 29 0 10 91 4 85 6.37e-32 107
MS.gene003576.t1 MTR_5g008360 63.158 76 28 0 18 93 8 83 1.17e-31 106
MS.gene003576.t1 MTR_4g072380 61.364 88 29 1 1 88 1 83 1.30e-31 106
MS.gene003576.t1 MTR_4g072690 65.854 82 28 0 10 91 4 85 1.95e-31 105
MS.gene003576.t1 MTR_4g072450 64.634 82 29 0 10 91 4 85 5.64e-31 104
MS.gene003576.t1 MTR_4g072910 65.672 67 23 0 25 91 34 100 5.94e-31 105
MS.gene003576.t1 MTR_3g084200 67.123 73 23 1 1 73 1 72 8.51e-31 104
MS.gene003576.t1 MTR_5g008370 70.149 67 20 0 25 91 24 90 1.08e-30 105
MS.gene003576.t1 MTR_4g072770 69.697 66 20 0 26 91 15 80 2.01e-30 103
MS.gene003576.t1 MTR_4g072550 64.384 73 26 0 21 93 31 103 2.82e-30 103
MS.gene003576.t1 MTR_4g072980 52.174 92 42 2 1 90 1 92 1.92e-29 101
MS.gene003576.t1 MTR_3g117640 67.164 67 21 1 25 90 33 99 4.93e-29 100
MS.gene003576.t1 MTR_4g072930 47.059 102 43 2 1 91 9 110 1.90e-27 96.7
MS.gene003576.t1 MTR_4g072560 62.121 66 24 1 26 90 32 97 2.30e-27 95.9
MS.gene003576.t1 MTR_4g072750 64.000 75 24 2 1 73 1 74 6.67e-27 94.4
MS.gene003576.t1 MTR_4g072290 48.387 93 34 1 1 93 1 79 1.92e-24 88.2
MS.gene003576.t1 MTR_3g110035 62.121 66 25 0 28 93 73 138 3.16e-23 86.7
MS.gene003576.t1 MTR_3g117610 56.923 65 27 1 24 88 43 106 2.81e-22 83.6
MS.gene003576.t1 MTR_3g113310 52.239 67 31 1 24 90 40 105 1.70e-21 81.3
MS.gene003576.t1 MTR_6g077850 49.254 67 34 0 25 91 33 99 4.70e-21 80.1
MS.gene003576.t1 MTR_4g072190 48.193 83 39 2 8 90 21 99 5.91e-21 79.7
MS.gene003576.t1 MTR_5g021820 48.810 84 39 3 10 90 21 103 3.60e-20 77.8
MS.gene003576.t1 MTR_8g076040 48.810 84 39 2 8 88 20 102 1.23e-19 76.6
MS.gene003576.t1 MTR_4g124750 51.316 76 35 2 4 78 46 120 3.08e-19 77.0
MS.gene003576.t1 MTR_4g072160 47.500 80 41 1 4 83 15 93 6.58e-19 75.9
MS.gene003576.t1 MTR_4g025830 51.389 72 31 2 23 91 76 146 9.61e-19 75.9
MS.gene003576.t1 MTR_2g043960 62.963 54 19 1 25 78 75 127 1.70e-18 75.5
MS.gene003576.t1 MTR_0388s0020 43.182 88 45 3 7 91 57 142 1.18e-17 72.8
MS.gene003576.t1 MTR_8g461400 44.086 93 25 2 1 93 1 66 1.97e-17 70.1
MS.gene003576.t1 MTR_3g092220 44.156 77 40 2 9 83 16 91 3.30e-17 70.9
MS.gene003576.t1 MTR_7g118010 53.968 63 26 2 26 86 23 84 6.43e-17 69.7
MS.gene003576.t1 MTR_1g094750 51.613 62 29 1 25 86 49 109 1.13e-16 69.3
MS.gene003576.t1 MTR_4g005310 45.455 77 35 2 17 86 47 123 1.98e-16 69.7
MS.gene003576.t1 MTR_1g009150 50.746 67 32 1 17 83 62 127 4.81e-16 69.3
MS.gene003576.t1 MTR_1g024085 46.753 77 29 2 4 80 26 90 8.38e-16 67.8
MS.gene003576.t1 MTR_8g026730 47.059 68 33 2 26 91 27 93 1.30e-15 66.6
MS.gene003576.t1 MTR_3g097120 42.683 82 38 2 19 92 2 82 2.09e-15 65.9
MS.gene003576.t1 MTR_1g061570 55.357 56 24 1 25 80 18 72 2.35e-15 66.2
MS.gene003576.t1 MTR_4g072840 45.556 90 18 3 1 90 1 59 2.90e-15 64.3
MS.gene003576.t1 MTR_1g063950 45.161 62 33 1 25 86 47 107 8.85e-15 64.7
MS.gene003576.t1 MTR_8g461210 49.153 59 29 1 25 83 34 91 9.88e-15 64.3
MS.gene003576.t1 MTR_7g101740 48.438 64 32 1 25 88 39 101 2.01e-14 63.5
MS.gene003576.t1 MTR_4g005320 51.724 58 27 1 26 83 70 126 2.79e-14 64.3
MS.gene003576.t1 MTR_2g066830 42.029 69 38 2 10 78 43 109 6.20e-14 63.2
MS.gene003576.t1 MTR_3g109160 50.704 71 34 1 8 78 51 120 6.29e-14 63.5
MS.gene003576.t1 MTR_7g405740 44.118 68 37 1 12 79 53 119 2.23e-13 62.0
MS.gene003576.t1 MTR_1g059770 46.552 58 30 1 26 83 49 105 6.17e-13 60.1
MS.gene003576.t1 MTR_7g104950 47.273 55 28 1 29 83 53 106 1.73e-12 58.9
MS.gene003576.t1 MTR_8g094980 40.741 81 34 2 25 92 2 81 2.35e-12 58.2
MS.gene003576.t1 MTR_8g101520 43.939 66 36 1 27 92 51 115 9.33e-12 57.8
MS.gene003576.t1 MTR_3g105900 66.667 36 12 0 25 60 1171 1206 1.17e-11 59.3
MS.gene003576.t1 MTR_8g096440 44.776 67 34 2 13 79 34 97 1.48e-11 57.0
MS.gene003576.t1 MTR_7g104940 45.455 55 29 1 29 83 53 106 1.69e-11 56.6
MS.gene003576.t1 MTR_4g021810 45.588 68 34 3 17 83 18 83 5.00e-11 54.7
MS.gene003576.t1 MTR_3g098970 31.818 88 57 2 8 93 33 119 8.48e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003576.t1 AT2G21210 52.632 95 41 2 1 91 1 95 1.61e-32 108
MS.gene003576.t1 AT4G38840 72.059 68 18 1 25 91 32 99 2.48e-32 108
MS.gene003576.t1 AT2G21210 52.632 95 41 2 1 91 68 162 9.62e-32 109
MS.gene003576.t1 AT5G18080 60.000 75 29 1 17 90 15 89 3.45e-30 102
MS.gene003576.t1 AT5G18020 57.333 75 31 1 17 90 15 89 8.70e-30 102
MS.gene003576.t1 AT3G03820 56.522 92 34 2 2 90 6 94 3.57e-29 100
MS.gene003576.t1 AT5G18060 66.154 65 21 1 27 90 25 89 4.23e-29 100
MS.gene003576.t1 AT5G18050 63.636 66 23 1 26 90 24 89 5.39e-29 100
MS.gene003576.t1 AT5G18010 57.333 75 31 1 17 90 15 89 5.45e-29 100
MS.gene003576.t1 AT4G34770 68.116 69 20 1 25 91 34 102 7.33e-29 100
MS.gene003576.t1 AT5G18030 63.636 66 23 1 26 90 22 87 2.26e-28 98.2
MS.gene003576.t1 AT2G21200 59.722 72 28 1 20 90 15 86 3.99e-28 97.8
MS.gene003576.t1 AT4G38850 60.294 68 24 1 26 90 21 88 1.11e-27 96.7
MS.gene003576.t1 AT4G38825 61.194 67 25 1 25 90 22 88 1.25e-27 96.7
MS.gene003576.t1 AT4G34800 51.685 89 35 2 1 86 1 84 5.48e-27 95.1
MS.gene003576.t1 AT3G03840 59.155 71 27 1 22 90 23 93 5.96e-27 95.1
MS.gene003576.t1 AT4G34810 61.972 71 22 2 25 90 47 117 1.71e-26 94.4
MS.gene003576.t1 AT3G03850 54.023 87 33 2 6 90 10 91 2.44e-26 93.2
MS.gene003576.t1 AT4G34790 68.254 63 18 1 26 86 39 101 3.32e-26 93.6
MS.gene003576.t1 AT3G03830 56.522 69 27 1 25 90 23 91 2.46e-24 88.2
MS.gene003576.t1 AT4G13790 49.315 73 35 1 20 90 19 91 3.64e-24 87.8
MS.gene003576.t1 AT4G34780 57.971 69 26 2 26 91 28 96 2.07e-23 86.3
MS.gene003576.t1 AT4G38860 51.190 84 38 1 8 88 19 102 3.44e-23 85.9
MS.gene003576.t1 AT1G75580 48.889 90 38 2 8 90 19 107 1.70e-21 81.6
MS.gene003576.t1 AT2G21220 47.674 86 41 2 8 90 19 103 4.08e-21 80.5
MS.gene003576.t1 AT4G34760 52.239 67 31 1 24 90 41 106 2.61e-20 78.6
MS.gene003576.t1 AT4G36110 50.000 82 39 2 8 88 21 101 1.85e-19 76.3
MS.gene003576.t1 AT1G19830 53.731 67 30 1 24 90 46 111 2.59e-19 76.3
MS.gene003576.t1 AT3G43120 61.111 54 20 1 25 78 78 130 6.39e-19 76.3
MS.gene003576.t1 AT2G16580 52.308 65 30 1 24 88 42 105 5.51e-18 72.4
MS.gene003576.t1 AT5G20810 62.963 54 19 1 25 78 78 130 6.84e-18 73.9
MS.gene003576.t1 AT2G18010 50.000 72 35 1 17 88 39 109 7.50e-18 72.4
MS.gene003576.t1 AT5G20810 61.818 55 20 1 24 78 77 130 1.54e-17 73.6
MS.gene003576.t1 AT5G66260 47.059 85 43 2 8 91 15 98 3.40e-17 70.5
MS.gene003576.t1 AT1G75590 50.704 71 30 2 13 83 33 98 2.10e-16 69.7
MS.gene003576.t1 AT2G45210 42.105 76 40 2 19 91 72 146 2.18e-16 69.7
MS.gene003576.t1 AT2G37030 48.387 62 31 1 25 86 48 108 3.28e-16 68.6
MS.gene003576.t1 AT3G51200 52.381 63 28 2 25 86 38 99 4.53e-16 67.8
MS.gene003576.t1 AT3G20220 54.237 59 25 2 26 83 47 104 7.62e-16 67.4
MS.gene003576.t1 AT5G10990 47.297 74 34 2 10 83 29 97 7.63e-16 68.2
MS.gene003576.t1 AT1G19840 48.649 74 33 2 10 83 29 97 9.25e-16 68.2
MS.gene003576.t1 AT3G60690 47.059 68 32 2 26 90 88 154 9.86e-16 68.6
MS.gene003576.t1 AT4G12410 47.826 69 32 2 26 91 76 143 1.34e-15 67.8
MS.gene003576.t1 AT2G46690 47.826 69 32 2 18 83 16 83 3.53e-15 65.9
MS.gene003576.t1 AT4G22620 40.964 83 45 2 12 91 65 146 7.67e-15 65.9
MS.gene003576.t1 AT4G00880 57.377 61 23 2 25 83 27 86 8.40e-15 64.7
MS.gene003576.t1 AT3G53250 42.466 73 37 2 14 86 41 108 1.63e-14 64.3
MS.gene003576.t1 AT3G61900 54.386 57 22 2 25 78 29 84 1.83e-14 64.3
MS.gene003576.t1 AT4G34750 45.161 62 33 1 25 86 36 96 1.96e-14 64.7
MS.gene003576.t1 AT4G34750 45.161 62 33 1 25 86 36 96 1.96e-14 64.7
MS.gene003576.t1 AT3G53250 45.161 62 30 1 25 86 82 139 2.51e-14 64.3
MS.gene003576.t1 AT3G12830 50.000 64 27 2 15 78 43 101 3.97e-14 63.5
MS.gene003576.t1 AT5G53590 41.096 73 37 2 25 92 45 116 6.70e-14 63.2
MS.gene003576.t1 AT4G09530 42.466 73 39 2 17 86 19 91 1.34e-13 61.2
MS.gene003576.t1 AT1G56150 44.444 63 34 1 16 78 28 89 4.38e-13 60.1
MS.gene003576.t1 AT4G31320 49.206 63 31 1 21 83 75 136 5.04e-13 61.6
MS.gene003576.t1 AT2G24400 54.717 53 23 1 26 78 64 115 3.12e-12 59.3
MS.gene003576.t1 AT3G03847 52.830 53 23 2 34 86 80 130 1.86e-11 56.6
MS.gene003576.t1 AT1G16510 47.170 53 27 1 26 78 54 105 1.93e-11 56.6

Find 21 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTAGATTCTTGTGTTT+TGG 0.227199 4.1:+30691967 None:intergenic
AATCAAGCAGAAGAAGAATT+TGG 0.271748 4.1:-30691836 MS.gene003576:CDS
GGTTGGTTCAAGTATGATAC+TGG 0.408482 4.1:+30691878 None:intergenic
TAGACTGCAAGATAGCCTTT+TGG 0.442040 4.1:+30691932 None:intergenic
ATTTGGATATGAGCATCCTA+TGG 0.472448 4.1:-30691819 MS.gene003576:CDS
AAGAATTCTCCCTCGCTACA+AGG 0.507613 4.1:+30691782 None:intergenic
TTTAGTAATTCTTGAAACAA+TGG 0.528370 4.1:+30691857 None:intergenic
GGCTATCTTGCAGTCTACGT+TGG 0.536328 4.1:-30691926 MS.gene003576:CDS
GTAATTCTTGAAACAATGGT+TGG 0.547064 4.1:+30691861 None:intergenic
AAGGGATTCGAAGTCCCAAA+AGG 0.563694 4.1:-30691947 MS.gene003576:CDS
CTCACAATTCCTTGTAGCGA+GGG 0.580910 4.1:-30691791 MS.gene003576:CDS
TTTGGATATGAGCATCCTAT+GGG 0.589260 4.1:-30691818 MS.gene003576:CDS
TTCTGATAAGCTTTGCTATG+CGG 0.610874 4.1:+30692002 None:intergenic
TCTACGTTGGAGATCAAATG+AGG 0.626265 4.1:-30691913 MS.gene003576:CDS
CAAAACACAAGAATCTACCA+AGG 0.648832 4.1:-30691966 MS.gene003576:CDS
TCTCACAATTCCTTGTAGCG+AGG 0.655893 4.1:-30691792 MS.gene003576:CDS
GGATATGAGCATCCTATGGG+TGG 0.659018 4.1:-30691815 MS.gene003576:CDS
GGAATTGTGAGACCACCCAT+AGG 0.670166 4.1:+30691803 None:intergenic
AAAACACAAGAATCTACCAA+GGG 0.683751 4.1:-30691965 MS.gene003576:CDS
ACGTTGGAGATCAAATGAGG+CGG 0.704375 4.1:-30691910 MS.gene003576:CDS
GCTCACTCAAGCGAGAACTG+AGG 0.736964 4.1:+30691756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGTAATTCTTGAAACAA+TGG + chr4.1:30691907-30691926 None:intergenic 20.0%
AAAACACAAGAATCTACCAA+GGG - chr4.1:30691796-30691815 MS.gene003576:CDS 30.0%
AATCAAGCAGAAGAAGAATT+TGG - chr4.1:30691925-30691944 MS.gene003576:CDS 30.0%
GTAATTCTTGAAACAATGGT+TGG + chr4.1:30691903-30691922 None:intergenic 30.0%
!!! TCTTGTGTTTTGGAAAATGA+TGG + chr4.1:30691787-30691806 None:intergenic 30.0%
ATTTGGATATGAGCATCCTA+TGG - chr4.1:30691942-30691961 MS.gene003576:CDS 35.0%
CAAAACACAAGAATCTACCA+AGG - chr4.1:30691795-30691814 MS.gene003576:CDS 35.0%
TTTGGATATGAGCATCCTAT+GGG - chr4.1:30691943-30691962 MS.gene003576:CDS 35.0%
! CTTGGTAGATTCTTGTGTTT+TGG + chr4.1:30691797-30691816 None:intergenic 35.0%
! TTCTGATAAGCTTTGCTATG+CGG + chr4.1:30691762-30691781 None:intergenic 35.0%
TCTACGTTGGAGATCAAATG+AGG - chr4.1:30691848-30691867 MS.gene003576:CDS 40.0%
! AGACTGCAAGATAGCCTTTT+GGG + chr4.1:30691831-30691850 None:intergenic 40.0%
! GGTTGGTTCAAGTATGATAC+TGG + chr4.1:30691886-30691905 None:intergenic 40.0%
! TAGACTGCAAGATAGCCTTT+TGG + chr4.1:30691832-30691851 None:intergenic 40.0%
AAGAATTCTCCCTCGCTACA+AGG + chr4.1:30691982-30692001 None:intergenic 45.0%
AAGGGATTCGAAGTCCCAAA+AGG - chr4.1:30691814-30691833 MS.gene003576:CDS 45.0%
ACGTTGGAGATCAAATGAGG+CGG - chr4.1:30691851-30691870 MS.gene003576:CDS 45.0%
CTCACAATTCCTTGTAGCGA+GGG - chr4.1:30691970-30691989 MS.gene003576:CDS 45.0%
TCTCACAATTCCTTGTAGCG+AGG - chr4.1:30691969-30691988 MS.gene003576:CDS 45.0%
!!! TTTTGGGACTTCGAATCCCT+TGG + chr4.1:30691815-30691834 None:intergenic 45.0%
GGAATTGTGAGACCACCCAT+AGG + chr4.1:30691961-30691980 None:intergenic 50.0%
GGATATGAGCATCCTATGGG+TGG - chr4.1:30691946-30691965 MS.gene003576:CDS 50.0%
GGCTATCTTGCAGTCTACGT+TGG - chr4.1:30691835-30691854 MS.gene003576:CDS 50.0%
GCTCACTCAAGCGAGAACTG+AGG + chr4.1:30692008-30692027 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 30691751 30692032 30691751 ID=MS.gene003576
chr4.1 mRNA 30691751 30692032 30691751 ID=MS.gene003576.t1;Parent=MS.gene003576
chr4.1 exon 30691751 30692032 30691751 ID=MS.gene003576.t1.exon1;Parent=MS.gene003576.t1
chr4.1 CDS 30691751 30692032 30691751 ID=cds.MS.gene003576.t1;Parent=MS.gene003576.t1
Gene Sequence

>MS.gene003576

ATGGGTTTCCGCATAGCAAAGCTTATCAGAATGCCATCATTTTCCAAAACACAAGAATCTACCAAGGGATTCGAAGTCCCAAAAGGCTATCTTGCAGTCTACGTTGGAGATCAAATGAGGCGGTTTGTGATTCCAGTATCATACTTGAACCAACCATTGTTTCAAGAATTACTAAATCAAGCAGAAGAAGAATTTGGATATGAGCATCCTATGGGTGGTCTCACAATTCCTTGTAGCGAGGGAGAATTCTTAAACCTCAGTTCTCGCTTGAGTGAGCTGTAA
Protein sequence

>MS.gene003576.t1

MGFRIAKLIRMPSFSKTQESTKGFEVPKGYLAVYVGDQMRRFVIPVSYLNQPLFQELLNQAEEEFGYEHPMGGLTIPCSEGEFLNLSSRLSEL