AlfalfaGEDB | MS.gene002380

M. sativa cultivar XinJiangDaYe / MS.gene002380

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002380.t1	AES63709.1	91.6	83	7	0	1	83	1	83	2.10E-34	154.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002380.t1	P33083	68.7	83	25	1	1	83	1	82	4.4e-25	115.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002380.t1	G7ILE9	91.6	83	7	0	1	83	1	83	1.5e-34	154.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002380	MS.gene50656	PPI
MS.gene002380	MS.gene50686	PPI
MS.gene002380	MS.gene062985	PPI
MS.gene002380	MS.gene003622	PPI
MS.gene002380	MS.gene057794	PPI
MS.gene002380	MS.gene003595	PPI
MS.gene002380	MS.gene50670	PPI
MS.gene002380	MS.gene50682	PPI
MS.gene002380	MS.gene28863	PPI
MS.gene002380	MS.gene062953	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002380.t1	MTR_4g050700	91.566	83	7	0	1	83	1	83	2.40e-52	159
MS.gene002380.t1	MTR_2g012410	91.566	83	7	0	1	83	1	83	2.40e-52	159
MS.gene002380.t1	MTR_3g084170	85.542	83	11	1	1	83	1	82	4.11e-47	146
MS.gene002380.t1	MTR_3g084240	84.337	83	12	1	1	83	1	82	4.85e-46	143
MS.gene002380.t1	MTR_3g110038	79.070	86	17	1	1	86	1	85	1.59e-44	139
MS.gene002380.t1	MTR_3g084260	80.723	83	16	0	1	83	1	83	2.86e-44	139
MS.gene002380.t1	MTR_3g110032	79.518	83	17	0	1	83	1	83	6.59e-44	138
MS.gene002380.t1	MTR_3g084150	78.313	83	17	1	1	83	1	82	1.12e-43	137
MS.gene002380.t1	MTR_3g084220	80.723	83	15	1	1	83	1	82	1.42e-43	137
MS.gene002380.t1	MTR_8g461410	77.108	83	18	1	1	83	1	82	2.49e-43	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002380.t1	AT4G38840	56.383	94	33	2	1	86	1	94	1.01e-27	97.4
MS.gene002380.t1	AT4G34800	58.974	78	29	1	13	87	8	85	1.09e-27	97.1
MS.gene002380.t1	AT5G18060	64.706	68	23	1	17	83	15	82	5.32e-27	95.1
MS.gene002380.t1	AT4G38825	65.672	67	22	1	18	83	15	81	5.46e-27	95.1
MS.gene002380.t1	AT2G21200	66.154	65	21	1	20	83	15	79	6.68e-27	95.1
MS.gene002380.t1	AT5G18050	63.235	68	24	1	17	83	15	82	7.89e-27	94.7
MS.gene002380.t1	AT5G18020	63.235	68	24	1	17	83	15	82	1.10e-26	94.4
MS.gene002380.t1	AT5G18080	63.235	68	24	1	17	83	15	82	2.78e-26	93.6
MS.gene002380.t1	AT4G34770	61.039	77	28	1	12	86	21	97	6.56e-26	92.8
MS.gene002380.t1	AT5G18030	55.696	79	32	2	8	83	2	80	2.82e-25	90.9

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Find 24 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGCAAATGTGCCAAA+GGG	0.571373	2.4:-71826406	MS.gene002380:CDS
ACGTTGGAGAGGAAATGAAG+CGG	0.725765	2.4:-71826369	MS.gene002380:CDS
ATACTTGCTGAGTCGTTCAG+AGG	0.600415	2.4:-71826305	MS.gene002380:CDS
ATTCCGATACGATCATCCAA+TGG	0.589813	2.4:-71826278	MS.gene002380:CDS
CACCCATTGGATGATCGTAT+CGG	0.591752	2.4:+71826275	None:intergenic
CATGTTACTTCTAGCTTCAA+TGG	0.317755	2.4:-71826218	MS.gene002380:CDS
CGATACGATCATCCAATGGG+TGG	0.653344	2.4:-71826274	MS.gene002380:CDS
CTTCTGTGCTAGGAATTGTG+AGG	0.712168	2.4:+71826251	None:intergenic
GAAAGTAGCAAATGTGCCAA+AGG	0.593992	2.4:-71826407	MS.gene002380:CDS
GCAAGTATTGAAATGAAGTT+TGG	0.325729	2.4:+71826320	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAGCAAATGTGCCAAA+GGG	-	chr2.4:71826246-71826265	MS.gene002380:CDS	35.0%
CAAAAAACATCTTCTGTGCT+AGG	+	chr2.4:71826414-71826433	None:intergenic	35.0%
TATACCTGCAGCTATAACAA+GGG	-	chr2.4:71826194-71826213	MS.gene002380:CDS	35.0%
TTGTTATAGCTGCAGGTATA+CGG	+	chr2.4:71826194-71826213	None:intergenic	35.0%
ATTCCGATACGATCATCCAA+TGG	-	chr2.4:71826374-71826393	MS.gene002380:CDS	40.0%
GAAAGTAGCAAATGTGCCAA+AGG	-	chr2.4:71826245-71826264	MS.gene002380:CDS	40.0%
GTATACCTGCAGCTATAACA+AGG	-	chr2.4:71826193-71826212	MS.gene002380:CDS	40.0%
TTCCGATACGATCATCCAAT+GGG	-	chr2.4:71826375-71826394	MS.gene002380:CDS	40.0%
ACGTTGGAGAGGAAATGAAG+CGG	-	chr2.4:71826283-71826302	MS.gene002380:CDS	45.0%
CACCCATTGGATGATCGTAT+CGG	+	chr2.4:71826380-71826399	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	71826183	71826491	71826183	ID=MS.gene002380
chr2.4	mRNA	71826183	71826491	71826183	ID=MS.gene002380.t1;Parent=MS.gene002380
chr2.4	exon	71826183	71826491	71826183	ID=MS.gene002380.t1.exon1;Parent=MS.gene002380.t1
chr2.4	CDS	71826183	71826491	71826183	ID=cds.MS.gene002380.t1;Parent=MS.gene002380.t1

Gene Sequence	>MS.gene002380 ATGGGCTTCCGTATACCTGCAGCTATAACAAGGGCGACATTTAGCAGCAGCCAAACGTCATCGAAAGTAGCAAATGTGCCAAAGGGATATCTTGCGGTGTACGTTGGAGAGGAAATGAAGCGGTTTGTGATCCCTACGTCATACTTGAACCAAACTTCATTTCAATACTTGCTGAGTCGTTCAGAGGAAGAATTCCGATACGATCATCCAATGGGTGGCCTCACAATTCCTAGCACAGAAGATGTTTTTTGCATGTTACTTCTAGCTTCAATGGACTATAAACCTGCAGCTGCGAGAGACTTACATTGA
Protein sequence	>MS.gene002380.t1 MGFRIPAAITRATFSSSQTSSKVANVPKGYLAVYVGEEMKRFVIPTSYLNQTSFQYLLSRSEEEFRYDHPMGGLTIPSTEDVFCMLLLASMDYKPAAARDLH