AlfalfaGEDB | MS.gene045364

M. sativa cultivar XinJiangDaYe / MS.gene045364

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045364.t1	AES71920.1	97.8	92	2	0	1	92	1	92	4.50E-44	186.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045364.t1	P33083	73.6	91	22	2	1	90	1	90	3.7e-31	135.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045364.t1	G7JAQ3	97.8	92	2	0	1	92	1	92	3.2e-44	186.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003576	MS.gene045364	PPI
MS.gene003579	MS.gene045364	PPI
MS.gene003580	MS.gene045364	PPI
MS.gene003581	MS.gene045364	PPI
MS.gene003582	MS.gene045364	PPI
MS.gene003584	MS.gene045364	PPI
MS.gene003585	MS.gene045364	PPI
MS.gene003593	MS.gene045364	PPI
MS.gene003597	MS.gene045364	PPI
MS.gene003598	MS.gene045364	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045364.t1	MTR_3g084170	97.826	92	2	0	1	92	1	92	1.03e-64	190
MS.gene045364.t1	MTR_3g084240	96.739	92	3	0	1	92	1	92	9.75e-64	187
MS.gene045364.t1	MTR_3g084220	93.478	92	6	0	1	92	1	92	2.85e-61	181
MS.gene045364.t1	MTR_3g110038	92.391	92	7	0	1	92	1	92	2.77e-60	179
MS.gene045364.t1	MTR_4g050700	88.172	93	10	1	1	92	1	93	1.25e-57	172
MS.gene045364.t1	MTR_2g012410	88.172	93	10	1	1	92	1	93	1.25e-57	172
MS.gene045364.t1	MTR_3g084150	87.097	93	10	2	1	92	1	92	3.16e-56	168
MS.gene045364.t1	MTR_8g461410	86.022	93	11	2	1	92	1	92	5.59e-56	168
MS.gene045364.t1	MTR_3g084180	86.022	93	11	2	1	92	1	92	2.78e-55	166
MS.gene045364.t1	MTR_3g110032	83.871	93	14	1	1	92	1	93	1.86e-53	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene045364.t1	AT4G38840	73.529	68	17	1	24	90	32	99	1.61e-35	116
MS.gene045364.t1	AT5G18020	64.474	76	26	1	16	90	15	90	4.17e-33	110
MS.gene045364.t1	AT5G18050	63.158	76	27	1	16	90	15	90	3.08e-32	108
MS.gene045364.t1	AT5G18060	63.158	76	27	1	16	90	15	90	7.08e-32	107
MS.gene045364.t1	AT5G18080	68.657	67	20	1	25	90	24	90	9.31e-32	107
MS.gene045364.t1	AT2G21200	65.278	72	24	1	19	89	15	86	5.18e-31	104
MS.gene045364.t1	AT5G18030	67.164	67	21	1	25	90	22	88	5.48e-31	104
MS.gene045364.t1	AT4G38825	62.500	72	26	1	20	90	18	89	2.12e-30	103
MS.gene045364.t1	AT2G21210	57.692	78	31	1	15	90	18	95	2.71e-30	103
MS.gene045364.t1	AT5G18010	60.526	76	29	1	16	90	15	90	9.80e-30	101

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Find 26 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATTGAATGTGCCAAA+GGG	0.560331	3.4:-78892894	MS.gene045364:CDS
AAATTTGTTGAGTCAAGCTG+AGG	0.621487	3.4:-78892793	MS.gene045364:CDS
AAGAAAACGTCTTCTGTGCA+AGG	0.577878	3.4:+78892729	None:intergenic
ACATTGGAGAGCAAATGAAG+CGG	0.725765	3.4:-78892857	MS.gene045364:CDS
AGCTTGGTTCAAGTATGACG+TGG	0.646004	3.4:+78892824	None:intergenic
AGTCAAGCTGAGGAAGAATT+CGG	0.473808	3.4:-78892783	MS.gene045364:CDS
ATATTACTTCTCGCTTCAAT+GGG	0.480545	3.4:-78892704	MS.gene045364:CDS
ATTCGGATATGACCATCCAA+TGG	0.589403	3.4:-78892766	MS.gene045364:CDS
CAAAGTATTGAATGTGCCAA+AGG	0.558522	3.4:-78892895	MS.gene045364:CDS
CATATTACTTCTCGCTTCAA+TGG	0.344439	3.4:-78892705	MS.gene045364:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTACTTCTCGCTTCAAT+GGG	-	chr3.4:78892948-78892967	MS.gene045364:CDS	30.0%
CATTCAATACTTTGGATGTT+TGG	+	chr3.4:78892751-78892770	None:intergenic	30.0%
CATATTACTTCTCGCTTCAA+TGG	-	chr3.4:78892947-78892966	MS.gene045364:CDS	35.0%
CTTTGGCACATTCAATACTT+TGG	+	chr3.4:78892759-78892778	None:intergenic	35.0%
AAGAAAACGTCTTCTGTGCA+AGG	+	chr3.4:78892926-78892945	None:intergenic	40.0%
ACATTGGAGAGCAAATGAAG+CGG	-	chr3.4:78892795-78892814	MS.gene045364:CDS	40.0%
AGTCAAGCTGAGGAAGAATT+CGG	-	chr3.4:78892869-78892888	MS.gene045364:CDS	40.0%
ATTCGGATATGACCATCCAA+TGG	-	chr3.4:78892886-78892905	MS.gene045364:CDS	40.0%
GTCTAATAGCTGCAGGTAAA+CGG	+	chr3.4:78892709-78892728	None:intergenic	40.0%
GTTTACCTGCAGCTATTAGA+CGG	-	chr3.4:78892708-78892727	MS.gene045364:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	78892698	78892976	78892698	ID=MS.gene045364
chr3.4	mRNA	78892698	78892976	78892698	ID=MS.gene045364.t1;Parent=MS.gene045364
chr3.4	exon	78892698	78892976	78892698	ID=MS.gene045364.t1.exon1;Parent=MS.gene045364.t1
chr3.4	CDS	78892698	78892976	78892698	ID=cds.MS.gene045364.t1;Parent=MS.gene045364.t1

Gene Sequence	>MS.gene045364 ATGGGTTTCCGTTTACCTGCAGCTATTAGACGGGCTTCCTTTAGCAGTAGCCAAACATCCAAAGTATTGAATGTGCCAAAGGGCTATCTTGCAGTGTACATTGGAGAGCAAATGAAGCGGTTTGTTATCCCCACGTCATACTTGAACCAAGCTTCATTTCAAAATTTGTTGAGTCAAGCTGAGGAAGAATTCGGATATGACCATCCAATGGGCGGCCTCACAATTCCTTGCACAGAAGACGTTTTCTTGCATATTACTTCTCGCTTCAATGGGCTATAA
Protein sequence	>MS.gene045364.t1 MGFRLPAAIRRASFSSSQTSKVLNVPKGYLAVYIGEQMKRFVIPTSYLNQASFQNLLSQAEEEFGYDHPMGGLTIPCTEDVFLHITSRFNGL